Multiple sequence alignment - TraesCS1D01G087900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G087900 chr1D 100.000 4211 0 0 1 4211 73318664 73314454 0.000000e+00 7777.0
1 TraesCS1D01G087900 chr1D 90.152 132 13 0 4080 4211 362783428 362783559 5.600000e-39 172.0
2 TraesCS1D01G087900 chr1A 93.589 2839 129 28 601 3412 73095236 73092424 0.000000e+00 4185.0
3 TraesCS1D01G087900 chr1A 100.000 29 0 0 7 35 276113683 276113655 2.000000e-03 54.7
4 TraesCS1D01G087900 chr1B 94.203 2743 111 22 601 3323 115451920 115449206 0.000000e+00 4141.0
5 TraesCS1D01G087900 chr1B 86.333 300 34 4 34 327 115461119 115460821 1.890000e-83 320.0
6 TraesCS1D01G087900 chr1B 83.648 159 15 3 323 470 115452191 115452033 5.680000e-29 139.0
7 TraesCS1D01G087900 chr5A 86.802 2417 256 31 733 3112 444087066 444089456 0.000000e+00 2638.0
8 TraesCS1D01G087900 chr5A 79.652 747 142 10 2227 2968 572697755 572697014 2.880000e-146 529.0
9 TraesCS1D01G087900 chr5D 85.767 2417 280 38 733 3112 343118045 343120434 0.000000e+00 2499.0
10 TraesCS1D01G087900 chr5D 88.819 635 60 9 3445 4078 558623788 558624412 0.000000e+00 769.0
11 TraesCS1D01G087900 chr5D 80.435 690 125 10 2228 2912 453421860 453422544 6.240000e-143 518.0
12 TraesCS1D01G087900 chr5D 75.768 879 110 44 3412 4211 404492022 404491168 8.670000e-92 348.0
13 TraesCS1D01G087900 chr5B 86.075 2377 262 35 762 3112 403533104 403535437 0.000000e+00 2492.0
14 TraesCS1D01G087900 chr5B 80.435 690 127 8 2227 2912 553945680 553946365 1.740000e-143 520.0
15 TraesCS1D01G087900 chr7B 91.098 674 53 6 3412 4081 599359304 599358634 0.000000e+00 905.0
16 TraesCS1D01G087900 chr7D 85.577 832 82 18 3412 4211 593539026 593539851 0.000000e+00 837.0
17 TraesCS1D01G087900 chr7D 78.146 151 31 2 59 208 264493154 264493303 1.250000e-15 95.3
18 TraesCS1D01G087900 chr6A 86.086 769 76 16 3462 4211 609481350 609482106 0.000000e+00 798.0
19 TraesCS1D01G087900 chr6A 85.947 676 83 9 3412 4081 11535272 11535941 0.000000e+00 712.0
20 TraesCS1D01G087900 chr6A 91.803 61 5 0 1434 1494 384916130 384916190 7.500000e-13 86.1
21 TraesCS1D01G087900 chr7A 85.988 678 77 12 3412 4079 607524515 607525184 0.000000e+00 710.0
22 TraesCS1D01G087900 chr6B 85.905 674 77 12 3411 4081 706517559 706518217 0.000000e+00 702.0
23 TraesCS1D01G087900 chr6B 90.152 132 13 0 4080 4211 585494961 585495092 5.600000e-39 172.0
24 TraesCS1D01G087900 chr4B 85.185 648 77 11 3439 4081 468004008 468003375 0.000000e+00 647.0
25 TraesCS1D01G087900 chr2B 84.478 670 85 12 3414 4081 153216470 153215818 0.000000e+00 643.0
26 TraesCS1D01G087900 chrUn 78.954 841 105 35 3412 4211 155034740 155035549 1.350000e-139 507.0
27 TraesCS1D01G087900 chrUn 90.152 132 13 0 4080 4211 154951361 154951492 5.600000e-39 172.0
28 TraesCS1D01G087900 chr2D 93.939 132 8 0 4080 4211 554074087 554074218 2.570000e-47 200.0
29 TraesCS1D01G087900 chr2D 90.909 132 12 0 4080 4211 438006933 438007064 1.200000e-40 178.0
30 TraesCS1D01G087900 chr2D 90.152 132 13 0 4080 4211 592000991 592001122 5.600000e-39 172.0
31 TraesCS1D01G087900 chr2D 100.000 29 0 0 6 34 621031517 621031489 2.000000e-03 54.7
32 TraesCS1D01G087900 chr3D 91.667 132 11 0 4080 4211 63347217 63347348 2.590000e-42 183.0
33 TraesCS1D01G087900 chr3D 87.179 78 8 2 89 165 582046224 582046148 2.090000e-13 87.9
34 TraesCS1D01G087900 chr3B 86.792 106 12 2 58 162 429281566 429281670 2.660000e-22 117.0
35 TraesCS1D01G087900 chr3A 81.579 76 14 0 128 203 8907246 8907171 3.510000e-06 63.9
36 TraesCS1D01G087900 chr6D 100.000 30 0 0 6 35 298129821 298129792 5.880000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G087900 chr1D 73314454 73318664 4210 True 7777 7777 100.0000 1 4211 1 chr1D.!!$R1 4210
1 TraesCS1D01G087900 chr1A 73092424 73095236 2812 True 4185 4185 93.5890 601 3412 1 chr1A.!!$R1 2811
2 TraesCS1D01G087900 chr1B 115449206 115452191 2985 True 2140 4141 88.9255 323 3323 2 chr1B.!!$R2 3000
3 TraesCS1D01G087900 chr5A 444087066 444089456 2390 False 2638 2638 86.8020 733 3112 1 chr5A.!!$F1 2379
4 TraesCS1D01G087900 chr5A 572697014 572697755 741 True 529 529 79.6520 2227 2968 1 chr5A.!!$R1 741
5 TraesCS1D01G087900 chr5D 343118045 343120434 2389 False 2499 2499 85.7670 733 3112 1 chr5D.!!$F1 2379
6 TraesCS1D01G087900 chr5D 558623788 558624412 624 False 769 769 88.8190 3445 4078 1 chr5D.!!$F3 633
7 TraesCS1D01G087900 chr5D 453421860 453422544 684 False 518 518 80.4350 2228 2912 1 chr5D.!!$F2 684
8 TraesCS1D01G087900 chr5D 404491168 404492022 854 True 348 348 75.7680 3412 4211 1 chr5D.!!$R1 799
9 TraesCS1D01G087900 chr5B 403533104 403535437 2333 False 2492 2492 86.0750 762 3112 1 chr5B.!!$F1 2350
10 TraesCS1D01G087900 chr5B 553945680 553946365 685 False 520 520 80.4350 2227 2912 1 chr5B.!!$F2 685
11 TraesCS1D01G087900 chr7B 599358634 599359304 670 True 905 905 91.0980 3412 4081 1 chr7B.!!$R1 669
12 TraesCS1D01G087900 chr7D 593539026 593539851 825 False 837 837 85.5770 3412 4211 1 chr7D.!!$F2 799
13 TraesCS1D01G087900 chr6A 609481350 609482106 756 False 798 798 86.0860 3462 4211 1 chr6A.!!$F3 749
14 TraesCS1D01G087900 chr6A 11535272 11535941 669 False 712 712 85.9470 3412 4081 1 chr6A.!!$F1 669
15 TraesCS1D01G087900 chr7A 607524515 607525184 669 False 710 710 85.9880 3412 4079 1 chr7A.!!$F1 667
16 TraesCS1D01G087900 chr6B 706517559 706518217 658 False 702 702 85.9050 3411 4081 1 chr6B.!!$F2 670
17 TraesCS1D01G087900 chr4B 468003375 468004008 633 True 647 647 85.1850 3439 4081 1 chr4B.!!$R1 642
18 TraesCS1D01G087900 chr2B 153215818 153216470 652 True 643 643 84.4780 3414 4081 1 chr2B.!!$R1 667
19 TraesCS1D01G087900 chrUn 155034740 155035549 809 False 507 507 78.9540 3412 4211 1 chrUn.!!$F2 799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.034896 ATGTGTCCACACCGAGAACC 59.965 55.0 7.38 0.00 45.88 3.62 F
250 251 0.176219 CGTGTGGGCCCTTACGATTA 59.824 55.0 33.78 7.78 38.72 1.75 F
1351 1455 0.036388 AGTACAACACCTGCATCGGG 60.036 55.0 0.00 0.00 35.68 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1455 1.352156 CTGCTAGGACGCGGTTGAAC 61.352 60.0 12.47 0.0 0.00 3.18 R
1915 2019 1.512156 CGGTGAACTGGTTTTCCCCG 61.512 60.0 0.00 0.0 39.62 5.73 R
3409 3557 0.107606 AGCTGCTGGAGATGCTCTTG 60.108 55.0 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.088950 AACATTAGTTGTAGCGCCGT 57.911 45.000 2.29 0.00 37.68 5.68
21 22 2.945447 ACATTAGTTGTAGCGCCGTA 57.055 45.000 2.29 0.00 36.57 4.02
22 23 2.805845 ACATTAGTTGTAGCGCCGTAG 58.194 47.619 2.29 0.00 36.57 3.51
23 24 1.521423 CATTAGTTGTAGCGCCGTAGC 59.479 52.381 2.29 0.00 37.41 3.58
24 25 0.527113 TTAGTTGTAGCGCCGTAGCA 59.473 50.000 2.29 0.00 39.83 3.49
25 26 0.527113 TAGTTGTAGCGCCGTAGCAA 59.473 50.000 2.29 0.00 39.83 3.91
26 27 0.108329 AGTTGTAGCGCCGTAGCAAT 60.108 50.000 2.29 0.00 39.83 3.56
27 28 1.135527 AGTTGTAGCGCCGTAGCAATA 59.864 47.619 2.29 0.00 39.83 1.90
28 29 1.521423 GTTGTAGCGCCGTAGCAATAG 59.479 52.381 2.29 0.00 39.83 1.73
29 30 0.596600 TGTAGCGCCGTAGCAATAGC 60.597 55.000 2.29 0.00 39.83 2.97
45 46 2.791927 GCGCGGGCTTTTTCCTAG 59.208 61.111 18.33 0.00 35.83 3.02
46 47 2.038837 GCGCGGGCTTTTTCCTAGT 61.039 57.895 18.33 0.00 35.83 2.57
47 48 0.741927 GCGCGGGCTTTTTCCTAGTA 60.742 55.000 18.33 0.00 35.83 1.82
48 49 1.287425 CGCGGGCTTTTTCCTAGTAG 58.713 55.000 0.00 0.00 0.00 2.57
49 50 1.405121 CGCGGGCTTTTTCCTAGTAGT 60.405 52.381 0.00 0.00 0.00 2.73
50 51 2.007608 GCGGGCTTTTTCCTAGTAGTG 58.992 52.381 0.00 0.00 0.00 2.74
51 52 2.629051 CGGGCTTTTTCCTAGTAGTGG 58.371 52.381 0.00 0.00 0.00 4.00
52 53 2.679930 CGGGCTTTTTCCTAGTAGTGGG 60.680 54.545 0.00 0.00 0.00 4.61
53 54 2.366533 GGCTTTTTCCTAGTAGTGGGC 58.633 52.381 0.00 0.00 0.00 5.36
54 55 2.007608 GCTTTTTCCTAGTAGTGGGCG 58.992 52.381 0.00 0.00 0.00 6.13
55 56 2.614734 GCTTTTTCCTAGTAGTGGGCGT 60.615 50.000 0.00 0.00 0.00 5.68
56 57 2.754946 TTTTCCTAGTAGTGGGCGTG 57.245 50.000 0.00 0.00 0.00 5.34
57 58 1.927487 TTTCCTAGTAGTGGGCGTGA 58.073 50.000 0.00 0.00 0.00 4.35
58 59 1.471119 TTCCTAGTAGTGGGCGTGAG 58.529 55.000 0.00 0.00 0.00 3.51
59 60 0.330604 TCCTAGTAGTGGGCGTGAGT 59.669 55.000 0.00 0.00 0.00 3.41
60 61 0.456221 CCTAGTAGTGGGCGTGAGTG 59.544 60.000 0.00 0.00 0.00 3.51
61 62 0.456221 CTAGTAGTGGGCGTGAGTGG 59.544 60.000 0.00 0.00 0.00 4.00
62 63 0.968901 TAGTAGTGGGCGTGAGTGGG 60.969 60.000 0.00 0.00 0.00 4.61
63 64 2.118732 TAGTGGGCGTGAGTGGGA 59.881 61.111 0.00 0.00 0.00 4.37
64 65 1.982395 TAGTGGGCGTGAGTGGGAG 60.982 63.158 0.00 0.00 0.00 4.30
65 66 4.394712 GTGGGCGTGAGTGGGAGG 62.395 72.222 0.00 0.00 0.00 4.30
68 69 3.775654 GGCGTGAGTGGGAGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
69 70 2.680352 GCGTGAGTGGGAGGGAGA 60.680 66.667 0.00 0.00 0.00 3.71
70 71 2.716017 GCGTGAGTGGGAGGGAGAG 61.716 68.421 0.00 0.00 0.00 3.20
71 72 2.055042 CGTGAGTGGGAGGGAGAGG 61.055 68.421 0.00 0.00 0.00 3.69
72 73 1.687493 GTGAGTGGGAGGGAGAGGG 60.687 68.421 0.00 0.00 0.00 4.30
73 74 1.862138 TGAGTGGGAGGGAGAGGGA 60.862 63.158 0.00 0.00 0.00 4.20
74 75 1.392534 GAGTGGGAGGGAGAGGGAA 59.607 63.158 0.00 0.00 0.00 3.97
75 76 0.689412 GAGTGGGAGGGAGAGGGAAG 60.689 65.000 0.00 0.00 0.00 3.46
76 77 1.690985 GTGGGAGGGAGAGGGAAGG 60.691 68.421 0.00 0.00 0.00 3.46
77 78 1.866997 TGGGAGGGAGAGGGAAGGA 60.867 63.158 0.00 0.00 0.00 3.36
78 79 1.396594 GGGAGGGAGAGGGAAGGAA 59.603 63.158 0.00 0.00 0.00 3.36
79 80 0.253207 GGGAGGGAGAGGGAAGGAAA 60.253 60.000 0.00 0.00 0.00 3.13
80 81 1.208706 GGAGGGAGAGGGAAGGAAAG 58.791 60.000 0.00 0.00 0.00 2.62
81 82 1.208706 GAGGGAGAGGGAAGGAAAGG 58.791 60.000 0.00 0.00 0.00 3.11
82 83 0.253394 AGGGAGAGGGAAGGAAAGGG 60.253 60.000 0.00 0.00 0.00 3.95
83 84 1.282653 GGGAGAGGGAAGGAAAGGGG 61.283 65.000 0.00 0.00 0.00 4.79
84 85 0.253207 GGAGAGGGAAGGAAAGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
85 86 0.913205 GAGAGGGAAGGAAAGGGGAC 59.087 60.000 0.00 0.00 0.00 4.46
86 87 0.196118 AGAGGGAAGGAAAGGGGACA 59.804 55.000 0.00 0.00 0.00 4.02
87 88 1.203622 AGAGGGAAGGAAAGGGGACAT 60.204 52.381 0.00 0.00 0.00 3.06
88 89 1.002857 AGGGAAGGAAAGGGGACATG 58.997 55.000 0.00 0.00 0.00 3.21
89 90 0.684479 GGGAAGGAAAGGGGACATGC 60.684 60.000 0.00 0.00 0.00 4.06
90 91 0.332972 GGAAGGAAAGGGGACATGCT 59.667 55.000 0.00 0.00 0.00 3.79
91 92 1.564348 GGAAGGAAAGGGGACATGCTA 59.436 52.381 0.00 0.00 0.00 3.49
92 93 2.422093 GGAAGGAAAGGGGACATGCTAG 60.422 54.545 0.00 0.00 0.00 3.42
93 94 1.216990 AGGAAAGGGGACATGCTAGG 58.783 55.000 0.00 0.00 0.00 3.02
94 95 0.919710 GGAAAGGGGACATGCTAGGT 59.080 55.000 0.00 0.00 0.00 3.08
95 96 1.285078 GGAAAGGGGACATGCTAGGTT 59.715 52.381 0.00 0.00 0.00 3.50
96 97 2.644676 GAAAGGGGACATGCTAGGTTC 58.355 52.381 0.00 0.00 0.00 3.62
97 98 1.972588 AAGGGGACATGCTAGGTTCT 58.027 50.000 0.00 0.00 0.00 3.01
98 99 1.207791 AGGGGACATGCTAGGTTCTG 58.792 55.000 0.00 0.00 0.00 3.02
99 100 0.464554 GGGGACATGCTAGGTTCTGC 60.465 60.000 0.00 0.00 0.00 4.26
100 101 0.464554 GGGACATGCTAGGTTCTGCC 60.465 60.000 0.00 0.00 37.58 4.85
101 102 0.811616 GGACATGCTAGGTTCTGCCG 60.812 60.000 0.00 0.00 43.70 5.69
102 103 1.432270 GACATGCTAGGTTCTGCCGC 61.432 60.000 0.00 0.00 43.70 6.53
103 104 2.182842 CATGCTAGGTTCTGCCGCC 61.183 63.158 0.00 0.00 43.70 6.13
104 105 3.740128 ATGCTAGGTTCTGCCGCCG 62.740 63.158 0.00 0.00 43.70 6.46
122 123 1.925229 CGCCGTCCGGTTTAAATAGA 58.075 50.000 7.66 0.00 37.65 1.98
123 124 1.589779 CGCCGTCCGGTTTAAATAGAC 59.410 52.381 7.66 0.00 37.65 2.59
126 127 2.195922 CGTCCGGTTTAAATAGACGGG 58.804 52.381 20.78 10.82 44.86 5.28
127 128 1.935873 GTCCGGTTTAAATAGACGGGC 59.064 52.381 17.52 14.33 44.36 6.13
128 129 1.832998 TCCGGTTTAAATAGACGGGCT 59.167 47.619 17.52 0.00 44.36 5.19
129 130 2.236893 TCCGGTTTAAATAGACGGGCTT 59.763 45.455 17.52 0.00 44.36 4.35
130 131 2.353579 CCGGTTTAAATAGACGGGCTTG 59.646 50.000 12.75 0.00 40.79 4.01
131 132 2.223180 CGGTTTAAATAGACGGGCTTGC 60.223 50.000 0.00 0.00 0.00 4.01
132 133 3.014623 GGTTTAAATAGACGGGCTTGCT 58.985 45.455 0.00 0.00 0.00 3.91
133 134 3.064958 GGTTTAAATAGACGGGCTTGCTC 59.935 47.826 0.00 0.00 0.00 4.26
134 135 2.614829 TAAATAGACGGGCTTGCTCC 57.385 50.000 0.00 0.00 0.00 4.70
135 136 0.107165 AAATAGACGGGCTTGCTCCC 60.107 55.000 0.00 0.00 43.02 4.30
136 137 0.983378 AATAGACGGGCTTGCTCCCT 60.983 55.000 0.00 0.00 44.30 4.20
137 138 1.403687 ATAGACGGGCTTGCTCCCTC 61.404 60.000 0.00 4.87 44.30 4.30
138 139 4.821589 GACGGGCTTGCTCCCTCG 62.822 72.222 7.49 0.00 44.30 4.63
179 180 3.778969 ACGCAGTGCAATGAATGTG 57.221 47.368 20.00 7.19 42.51 3.21
180 181 0.953727 ACGCAGTGCAATGAATGTGT 59.046 45.000 20.00 7.83 42.51 3.72
181 182 1.069022 ACGCAGTGCAATGAATGTGTC 60.069 47.619 20.00 0.00 42.51 3.67
182 183 1.730121 CGCAGTGCAATGAATGTGTCC 60.730 52.381 20.00 0.00 0.00 4.02
183 184 1.270274 GCAGTGCAATGAATGTGTCCA 59.730 47.619 20.00 0.00 0.00 4.02
184 185 2.923605 GCAGTGCAATGAATGTGTCCAC 60.924 50.000 20.00 0.00 0.00 4.02
185 186 2.293955 CAGTGCAATGAATGTGTCCACA 59.706 45.455 8.85 2.09 46.44 4.17
186 187 2.294233 AGTGCAATGAATGTGTCCACAC 59.706 45.455 1.56 2.69 45.05 3.82
187 188 1.612950 TGCAATGAATGTGTCCACACC 59.387 47.619 7.38 0.00 45.88 4.16
188 189 1.401409 GCAATGAATGTGTCCACACCG 60.401 52.381 7.38 0.00 45.88 4.94
189 190 2.150390 CAATGAATGTGTCCACACCGA 58.850 47.619 7.38 0.00 45.88 4.69
190 191 2.099141 ATGAATGTGTCCACACCGAG 57.901 50.000 7.38 0.00 45.88 4.63
191 192 1.044611 TGAATGTGTCCACACCGAGA 58.955 50.000 7.38 0.00 45.88 4.04
192 193 1.414550 TGAATGTGTCCACACCGAGAA 59.585 47.619 7.38 0.00 45.88 2.87
193 194 1.798813 GAATGTGTCCACACCGAGAAC 59.201 52.381 7.38 0.00 45.88 3.01
194 195 0.034896 ATGTGTCCACACCGAGAACC 59.965 55.000 7.38 0.00 45.88 3.62
195 196 1.663702 GTGTCCACACCGAGAACCG 60.664 63.158 0.00 0.00 40.85 4.44
196 197 1.829096 TGTCCACACCGAGAACCGA 60.829 57.895 0.00 0.00 41.76 4.69
197 198 1.364901 GTCCACACCGAGAACCGAA 59.635 57.895 0.00 0.00 41.76 4.30
198 199 0.666577 GTCCACACCGAGAACCGAAG 60.667 60.000 0.00 0.00 41.76 3.79
211 212 4.918201 CGAAGGAGGCGCCCATCC 62.918 72.222 26.15 24.80 37.37 3.51
212 213 3.797353 GAAGGAGGCGCCCATCCA 61.797 66.667 30.35 0.00 38.12 3.41
213 214 4.115199 AAGGAGGCGCCCATCCAC 62.115 66.667 30.35 13.23 38.12 4.02
216 217 4.864334 GAGGCGCCCATCCACCAG 62.864 72.222 26.15 0.00 0.00 4.00
219 220 4.101448 GCGCCCATCCACCAGTCT 62.101 66.667 0.00 0.00 0.00 3.24
220 221 2.671070 CGCCCATCCACCAGTCTT 59.329 61.111 0.00 0.00 0.00 3.01
221 222 1.904771 CGCCCATCCACCAGTCTTA 59.095 57.895 0.00 0.00 0.00 2.10
222 223 0.179073 CGCCCATCCACCAGTCTTAG 60.179 60.000 0.00 0.00 0.00 2.18
223 224 0.181350 GCCCATCCACCAGTCTTAGG 59.819 60.000 0.00 0.00 0.00 2.69
224 225 0.839946 CCCATCCACCAGTCTTAGGG 59.160 60.000 0.00 0.00 0.00 3.53
225 226 1.584724 CCATCCACCAGTCTTAGGGT 58.415 55.000 0.00 0.00 38.10 4.34
229 230 4.533318 ACCAGTCTTAGGGTGCGA 57.467 55.556 0.00 0.00 35.67 5.10
230 231 1.972978 ACCAGTCTTAGGGTGCGAC 59.027 57.895 0.00 0.00 35.67 5.19
231 232 1.218316 CCAGTCTTAGGGTGCGACC 59.782 63.158 0.00 0.00 37.60 4.79
232 233 1.153823 CAGTCTTAGGGTGCGACCG 60.154 63.158 0.00 0.00 39.83 4.79
233 234 1.605738 AGTCTTAGGGTGCGACCGT 60.606 57.895 5.95 5.95 39.83 4.83
234 235 1.445582 GTCTTAGGGTGCGACCGTG 60.446 63.158 9.78 0.00 39.83 4.94
235 236 1.904865 TCTTAGGGTGCGACCGTGT 60.905 57.895 9.78 0.00 39.83 4.49
236 237 1.736645 CTTAGGGTGCGACCGTGTG 60.737 63.158 9.78 1.40 39.83 3.82
237 238 3.229156 TTAGGGTGCGACCGTGTGG 62.229 63.158 9.78 0.00 39.83 4.17
244 245 3.697747 CGACCGTGTGGGCCCTTA 61.698 66.667 25.70 9.17 42.08 2.69
245 246 2.046604 GACCGTGTGGGCCCTTAC 60.047 66.667 25.70 20.17 37.27 2.34
246 247 3.945304 GACCGTGTGGGCCCTTACG 62.945 68.421 31.70 31.70 37.27 3.18
247 248 3.697747 CCGTGTGGGCCCTTACGA 61.698 66.667 36.71 13.30 38.72 3.43
248 249 2.582436 CGTGTGGGCCCTTACGAT 59.418 61.111 33.78 0.00 38.72 3.73
249 250 1.078708 CGTGTGGGCCCTTACGATT 60.079 57.895 33.78 0.00 38.72 3.34
250 251 0.176219 CGTGTGGGCCCTTACGATTA 59.824 55.000 33.78 7.78 38.72 1.75
251 252 1.805120 CGTGTGGGCCCTTACGATTAG 60.805 57.143 33.78 13.58 38.72 1.73
252 253 1.208776 GTGTGGGCCCTTACGATTAGT 59.791 52.381 25.70 0.00 0.00 2.24
253 254 1.483415 TGTGGGCCCTTACGATTAGTC 59.517 52.381 25.70 0.00 0.00 2.59
254 255 1.125633 TGGGCCCTTACGATTAGTCC 58.874 55.000 25.70 0.00 0.00 3.85
255 256 1.125633 GGGCCCTTACGATTAGTCCA 58.874 55.000 17.04 0.00 0.00 4.02
256 257 1.697982 GGGCCCTTACGATTAGTCCAT 59.302 52.381 17.04 0.00 0.00 3.41
257 258 2.550208 GGGCCCTTACGATTAGTCCATG 60.550 54.545 17.04 0.00 0.00 3.66
258 259 2.104281 GGCCCTTACGATTAGTCCATGT 59.896 50.000 0.00 0.00 0.00 3.21
259 260 3.131396 GCCCTTACGATTAGTCCATGTG 58.869 50.000 0.00 0.00 0.00 3.21
260 261 3.728845 CCCTTACGATTAGTCCATGTGG 58.271 50.000 0.00 0.00 0.00 4.17
261 262 3.131396 CCTTACGATTAGTCCATGTGGC 58.869 50.000 0.00 0.00 34.44 5.01
262 263 3.431626 CCTTACGATTAGTCCATGTGGCA 60.432 47.826 0.00 0.00 34.44 4.92
263 264 2.779755 ACGATTAGTCCATGTGGCAA 57.220 45.000 0.00 0.00 34.44 4.52
264 265 2.632377 ACGATTAGTCCATGTGGCAAG 58.368 47.619 0.00 0.00 34.44 4.01
265 266 1.331756 CGATTAGTCCATGTGGCAAGC 59.668 52.381 0.00 0.00 34.44 4.01
266 267 2.368439 GATTAGTCCATGTGGCAAGCA 58.632 47.619 0.00 0.00 34.44 3.91
267 268 1.533625 TTAGTCCATGTGGCAAGCAC 58.466 50.000 0.00 0.00 34.44 4.40
268 269 0.322456 TAGTCCATGTGGCAAGCACC 60.322 55.000 0.00 0.00 34.44 5.01
269 270 1.604593 GTCCATGTGGCAAGCACCT 60.605 57.895 0.00 0.00 34.44 4.00
270 271 1.303561 TCCATGTGGCAAGCACCTC 60.304 57.895 0.00 0.00 34.44 3.85
271 272 2.345760 CCATGTGGCAAGCACCTCC 61.346 63.158 0.00 0.00 0.00 4.30
272 273 1.604308 CATGTGGCAAGCACCTCCA 60.604 57.895 0.00 0.00 0.00 3.86
273 274 1.303888 ATGTGGCAAGCACCTCCAG 60.304 57.895 0.00 0.00 0.00 3.86
274 275 2.674380 GTGGCAAGCACCTCCAGG 60.674 66.667 0.00 0.00 42.17 4.45
275 276 4.666253 TGGCAAGCACCTCCAGGC 62.666 66.667 0.00 0.00 39.32 4.85
278 279 2.281761 CAAGCACCTCCAGGCGTT 60.282 61.111 0.00 0.00 39.32 4.84
279 280 2.032681 AAGCACCTCCAGGCGTTC 59.967 61.111 0.00 0.00 39.32 3.95
280 281 2.818169 AAGCACCTCCAGGCGTTCA 61.818 57.895 0.00 0.00 39.32 3.18
281 282 3.050275 GCACCTCCAGGCGTTCAC 61.050 66.667 0.00 0.00 39.32 3.18
282 283 2.425592 CACCTCCAGGCGTTCACA 59.574 61.111 0.00 0.00 39.32 3.58
283 284 1.003355 CACCTCCAGGCGTTCACAT 60.003 57.895 0.00 0.00 39.32 3.21
284 285 0.249120 CACCTCCAGGCGTTCACATA 59.751 55.000 0.00 0.00 39.32 2.29
285 286 1.134401 CACCTCCAGGCGTTCACATAT 60.134 52.381 0.00 0.00 39.32 1.78
286 287 1.139058 ACCTCCAGGCGTTCACATATC 59.861 52.381 0.00 0.00 39.32 1.63
287 288 1.541233 CCTCCAGGCGTTCACATATCC 60.541 57.143 0.00 0.00 0.00 2.59
288 289 1.138859 CTCCAGGCGTTCACATATCCA 59.861 52.381 0.00 0.00 0.00 3.41
289 290 1.768275 TCCAGGCGTTCACATATCCAT 59.232 47.619 0.00 0.00 0.00 3.41
290 291 2.146342 CCAGGCGTTCACATATCCATC 58.854 52.381 0.00 0.00 0.00 3.51
291 292 2.146342 CAGGCGTTCACATATCCATCC 58.854 52.381 0.00 0.00 0.00 3.51
292 293 2.050144 AGGCGTTCACATATCCATCCT 58.950 47.619 0.00 0.00 0.00 3.24
293 294 3.006859 CAGGCGTTCACATATCCATCCTA 59.993 47.826 0.00 0.00 0.00 2.94
294 295 3.259374 AGGCGTTCACATATCCATCCTAG 59.741 47.826 0.00 0.00 0.00 3.02
295 296 3.258372 GGCGTTCACATATCCATCCTAGA 59.742 47.826 0.00 0.00 0.00 2.43
296 297 4.081420 GGCGTTCACATATCCATCCTAGAT 60.081 45.833 0.00 0.00 0.00 1.98
297 298 5.127194 GGCGTTCACATATCCATCCTAGATA 59.873 44.000 0.00 0.00 0.00 1.98
298 299 6.183360 GGCGTTCACATATCCATCCTAGATAT 60.183 42.308 0.00 0.00 37.40 1.63
299 300 7.014326 GGCGTTCACATATCCATCCTAGATATA 59.986 40.741 0.00 0.00 35.25 0.86
300 301 8.079203 GCGTTCACATATCCATCCTAGATATAG 58.921 40.741 0.00 0.00 35.25 1.31
301 302 8.572185 CGTTCACATATCCATCCTAGATATAGG 58.428 40.741 7.11 7.11 35.25 2.57
302 303 8.364142 GTTCACATATCCATCCTAGATATAGGC 58.636 40.741 8.65 0.00 35.25 3.93
303 304 7.013220 TCACATATCCATCCTAGATATAGGCC 58.987 42.308 8.65 0.00 35.25 5.19
304 305 6.013379 ACATATCCATCCTAGATATAGGCCG 58.987 44.000 8.65 2.07 35.25 6.13
305 306 3.314307 TCCATCCTAGATATAGGCCGG 57.686 52.381 8.65 10.90 37.16 6.13
306 307 2.091278 TCCATCCTAGATATAGGCCGGG 60.091 54.545 16.53 13.34 37.16 5.73
307 308 2.359355 CCATCCTAGATATAGGCCGGGT 60.359 54.545 8.65 0.00 37.16 5.28
308 309 3.117246 CCATCCTAGATATAGGCCGGGTA 60.117 52.174 8.65 0.00 37.16 3.69
309 310 3.947612 TCCTAGATATAGGCCGGGTAG 57.052 52.381 8.65 0.00 37.16 3.18
310 311 2.512896 TCCTAGATATAGGCCGGGTAGG 59.487 54.545 8.65 3.76 44.97 3.18
311 312 2.424523 CCTAGATATAGGCCGGGTAGGG 60.425 59.091 2.18 0.00 41.48 3.53
312 313 1.390287 AGATATAGGCCGGGTAGGGA 58.610 55.000 2.18 0.00 41.48 4.20
313 314 1.288335 AGATATAGGCCGGGTAGGGAG 59.712 57.143 2.18 0.00 41.48 4.30
314 315 1.287146 GATATAGGCCGGGTAGGGAGA 59.713 57.143 2.18 0.00 41.48 3.71
315 316 0.702902 TATAGGCCGGGTAGGGAGAG 59.297 60.000 2.18 0.00 41.48 3.20
316 317 1.369855 ATAGGCCGGGTAGGGAGAGT 61.370 60.000 2.18 0.00 41.48 3.24
317 318 2.294170 TAGGCCGGGTAGGGAGAGTG 62.294 65.000 2.18 0.00 41.48 3.51
318 319 3.851128 GCCGGGTAGGGAGAGTGC 61.851 72.222 2.18 0.00 41.48 4.40
319 320 3.155167 CCGGGTAGGGAGAGTGCC 61.155 72.222 0.00 0.00 35.97 5.01
320 321 3.528370 CGGGTAGGGAGAGTGCCG 61.528 72.222 0.00 0.00 30.73 5.69
321 322 2.363925 GGGTAGGGAGAGTGCCGT 60.364 66.667 0.00 0.00 30.73 5.68
330 331 0.249911 GAGAGTGCCGTGTCCAGTTT 60.250 55.000 0.00 0.00 0.00 2.66
353 354 0.531974 GGGCTGAACGTGTTGTCTGA 60.532 55.000 0.00 0.00 0.00 3.27
357 358 2.809446 CTGAACGTGTTGTCTGACAGA 58.191 47.619 10.77 0.00 0.00 3.41
361 362 3.290308 ACGTGTTGTCTGACAGAGATC 57.710 47.619 10.77 4.54 31.63 2.75
366 367 1.064946 GTCTGACAGAGATCGGGCG 59.935 63.158 5.10 0.00 31.63 6.13
370 371 3.140225 GACAGAGATCGGGCGGTCC 62.140 68.421 0.00 0.00 0.00 4.46
382 383 3.429925 CGGTCCGCCTAGAGGTAC 58.570 66.667 0.00 0.00 37.57 3.34
400 412 2.919043 GGGGATCCGGTTGCAGAT 59.081 61.111 5.45 0.00 0.00 2.90
404 416 1.162800 GGATCCGGTTGCAGATGCTC 61.163 60.000 0.00 0.00 42.66 4.26
425 437 5.797934 GCTCTTATTTAGTCGATGGATCTCG 59.202 44.000 0.00 0.00 39.99 4.04
470 482 5.279156 GCAAAAGAATTTCCCACTCTCACAT 60.279 40.000 0.00 0.00 37.28 3.21
472 484 5.511386 AAGAATTTCCCACTCTCACATCT 57.489 39.130 0.00 0.00 0.00 2.90
473 485 4.841422 AGAATTTCCCACTCTCACATCTG 58.159 43.478 0.00 0.00 0.00 2.90
474 486 4.533707 AGAATTTCCCACTCTCACATCTGA 59.466 41.667 0.00 0.00 0.00 3.27
475 487 3.969287 TTTCCCACTCTCACATCTGAG 57.031 47.619 0.00 0.00 44.94 3.35
492 504 4.277257 CTGAGATCAGACGTGAAGAGAG 57.723 50.000 3.67 0.00 46.59 3.20
493 505 3.680490 TGAGATCAGACGTGAAGAGAGT 58.320 45.455 0.00 0.00 35.88 3.24
494 506 4.075682 TGAGATCAGACGTGAAGAGAGTT 58.924 43.478 0.00 0.00 35.88 3.01
495 507 4.083057 TGAGATCAGACGTGAAGAGAGTTG 60.083 45.833 0.00 0.00 35.88 3.16
496 508 4.075682 AGATCAGACGTGAAGAGAGTTGA 58.924 43.478 0.00 0.00 35.88 3.18
497 509 4.704540 AGATCAGACGTGAAGAGAGTTGAT 59.295 41.667 0.00 0.00 35.88 2.57
498 510 4.166187 TCAGACGTGAAGAGAGTTGATG 57.834 45.455 0.00 0.00 0.00 3.07
499 511 2.665537 CAGACGTGAAGAGAGTTGATGC 59.334 50.000 0.00 0.00 0.00 3.91
500 512 2.297315 AGACGTGAAGAGAGTTGATGCA 59.703 45.455 0.00 0.00 0.00 3.96
501 513 2.665537 GACGTGAAGAGAGTTGATGCAG 59.334 50.000 0.00 0.00 0.00 4.41
502 514 2.297315 ACGTGAAGAGAGTTGATGCAGA 59.703 45.455 0.00 0.00 0.00 4.26
503 515 3.056250 ACGTGAAGAGAGTTGATGCAGAT 60.056 43.478 0.00 0.00 0.00 2.90
504 516 3.931468 CGTGAAGAGAGTTGATGCAGATT 59.069 43.478 0.00 0.00 0.00 2.40
505 517 4.032672 CGTGAAGAGAGTTGATGCAGATTC 59.967 45.833 0.00 0.00 0.00 2.52
506 518 4.934001 GTGAAGAGAGTTGATGCAGATTCA 59.066 41.667 0.00 0.00 0.00 2.57
507 519 4.934001 TGAAGAGAGTTGATGCAGATTCAC 59.066 41.667 0.00 0.00 0.00 3.18
508 520 3.871485 AGAGAGTTGATGCAGATTCACC 58.129 45.455 0.00 0.00 0.00 4.02
509 521 2.606725 GAGAGTTGATGCAGATTCACCG 59.393 50.000 0.00 0.00 0.00 4.94
510 522 2.234661 AGAGTTGATGCAGATTCACCGA 59.765 45.455 0.00 0.00 0.00 4.69
516 528 4.371786 TGATGCAGATTCACCGAGTAATC 58.628 43.478 0.00 0.00 33.21 1.75
528 540 2.353406 CCGAGTAATCCGGCCGATAATT 60.353 50.000 30.73 23.56 40.54 1.40
529 541 3.323243 CGAGTAATCCGGCCGATAATTT 58.677 45.455 30.73 14.35 0.00 1.82
531 543 4.143179 CGAGTAATCCGGCCGATAATTTTC 60.143 45.833 30.73 19.56 0.00 2.29
532 544 3.744426 AGTAATCCGGCCGATAATTTTCG 59.256 43.478 30.73 10.87 38.83 3.46
533 545 2.249844 ATCCGGCCGATAATTTTCGT 57.750 45.000 30.73 0.00 37.42 3.85
534 546 1.574134 TCCGGCCGATAATTTTCGTC 58.426 50.000 30.73 4.35 37.42 4.20
535 547 1.137479 TCCGGCCGATAATTTTCGTCT 59.863 47.619 30.73 0.00 37.42 4.18
536 548 1.937899 CCGGCCGATAATTTTCGTCTT 59.062 47.619 30.73 0.00 37.42 3.01
537 549 2.033151 CCGGCCGATAATTTTCGTCTTC 60.033 50.000 30.73 3.90 37.42 2.87
538 550 2.864343 CGGCCGATAATTTTCGTCTTCT 59.136 45.455 24.07 0.00 37.42 2.85
539 551 3.060473 CGGCCGATAATTTTCGTCTTCTC 60.060 47.826 24.07 0.49 37.42 2.87
540 552 3.247886 GGCCGATAATTTTCGTCTTCTCC 59.752 47.826 15.59 4.98 37.42 3.71
541 553 3.247886 GCCGATAATTTTCGTCTTCTCCC 59.752 47.826 15.59 0.00 37.42 4.30
542 554 3.489785 CCGATAATTTTCGTCTTCTCCCG 59.510 47.826 15.59 0.00 37.42 5.14
543 555 3.060473 CGATAATTTTCGTCTTCTCCCGC 60.060 47.826 9.78 0.00 34.46 6.13
544 556 1.076332 AATTTTCGTCTTCTCCCGCG 58.924 50.000 0.00 0.00 0.00 6.46
602 618 3.491652 GAAAGGCTCCACGCGCTC 61.492 66.667 5.73 0.00 40.44 5.03
638 680 2.722201 GCTACACCCCCAGTCTCGG 61.722 68.421 0.00 0.00 0.00 4.63
654 696 3.123620 GGCCACGAAGCAGAGCAG 61.124 66.667 0.00 0.00 0.00 4.24
674 716 0.843309 TTCCTGCAACCACTTGGAGA 59.157 50.000 1.14 0.00 46.21 3.71
675 717 0.397941 TCCTGCAACCACTTGGAGAG 59.602 55.000 1.14 0.00 46.21 3.20
676 718 0.397941 CCTGCAACCACTTGGAGAGA 59.602 55.000 1.14 0.00 46.21 3.10
677 719 1.202806 CCTGCAACCACTTGGAGAGAA 60.203 52.381 1.14 0.00 46.21 2.87
678 720 2.553904 CCTGCAACCACTTGGAGAGAAT 60.554 50.000 1.14 0.00 46.21 2.40
689 731 5.423610 CACTTGGAGAGAATAGAAGGAGGAA 59.576 44.000 0.00 0.00 0.00 3.36
697 739 1.861982 TAGAAGGAGGAACGGAAGGG 58.138 55.000 0.00 0.00 0.00 3.95
705 747 1.907255 AGGAACGGAAGGGAGGTAAAG 59.093 52.381 0.00 0.00 0.00 1.85
711 754 3.649502 ACGGAAGGGAGGTAAAGAAAAGA 59.350 43.478 0.00 0.00 0.00 2.52
716 759 6.239915 GGAAGGGAGGTAAAGAAAAGAGAGAA 60.240 42.308 0.00 0.00 0.00 2.87
719 762 6.273495 AGGGAGGTAAAGAAAAGAGAGAACAT 59.727 38.462 0.00 0.00 0.00 2.71
730 773 3.561143 AGAGAGAACATATCGACTGGCT 58.439 45.455 0.00 0.00 0.00 4.75
801 859 0.725686 TGACTCGTCGATCGTCTTCC 59.274 55.000 15.94 2.45 40.80 3.46
885 957 3.123804 GGTGTGTACCGATGATGATGAC 58.876 50.000 0.00 0.00 37.19 3.06
976 1062 0.822164 CGTAGGTCCCCTTTCATCGT 59.178 55.000 0.00 0.00 34.61 3.73
1214 1318 2.928757 CTCAAGAACATCTCGCTCAAGG 59.071 50.000 0.00 0.00 0.00 3.61
1351 1455 0.036388 AGTACAACACCTGCATCGGG 60.036 55.000 0.00 0.00 35.68 5.14
1424 1528 2.016393 CTTCTACCTGGCGCGGATGA 62.016 60.000 8.83 3.13 0.00 2.92
1494 1598 2.105128 CGGGGAGCTCGTCATCAC 59.895 66.667 7.83 0.00 0.00 3.06
1498 1602 0.036388 GGGAGCTCGTCATCACCAAA 60.036 55.000 7.83 0.00 0.00 3.28
1921 2028 4.011517 GCGACCAAGGACGGGGAA 62.012 66.667 12.43 0.00 34.26 3.97
2044 2151 1.655484 TCTACAGCAATGCCATCACG 58.345 50.000 0.00 0.00 0.00 4.35
2272 2379 2.861101 GCGGATGGAGGAGATGCGA 61.861 63.158 0.00 0.00 36.84 5.10
2413 2520 3.385384 CTCGTGAGCTGCCTCCCA 61.385 66.667 0.00 0.00 37.29 4.37
2572 2679 3.961414 GTGGTGCGGGAAGGGGAA 61.961 66.667 0.00 0.00 0.00 3.97
3208 3323 4.970662 ATGATTGGACGTGAAATTCAGG 57.029 40.909 13.38 13.38 38.16 3.86
3260 3375 7.847564 GTGAAGAAAAGAAAAACATGAACATGC 59.152 33.333 13.71 0.00 42.39 4.06
3277 3392 7.366513 TGAACATGCAATACGATTTCTTTTGA 58.633 30.769 0.00 0.00 0.00 2.69
3283 3398 6.019152 GCAATACGATTTCTTTTGAAGCGTA 58.981 36.000 9.31 9.31 46.58 4.42
3284 3399 6.192863 GCAATACGATTTCTTTTGAAGCGTAG 59.807 38.462 11.92 2.74 46.19 3.51
3285 3400 6.963049 ATACGATTTCTTTTGAAGCGTAGT 57.037 33.333 11.92 0.73 46.19 2.73
3286 3401 5.668558 ACGATTTCTTTTGAAGCGTAGTT 57.331 34.783 0.00 0.00 43.82 2.24
3287 3402 6.774354 ACGATTTCTTTTGAAGCGTAGTTA 57.226 33.333 0.00 0.00 43.82 2.24
3288 3403 7.360575 ACGATTTCTTTTGAAGCGTAGTTAT 57.639 32.000 0.00 0.00 43.82 1.89
3289 3404 7.803724 ACGATTTCTTTTGAAGCGTAGTTATT 58.196 30.769 0.00 0.00 43.82 1.40
3290 3405 8.287503 ACGATTTCTTTTGAAGCGTAGTTATTT 58.712 29.630 0.00 0.00 43.82 1.40
3353 3501 5.508200 GTGGAACCAACACTAATTGAACA 57.492 39.130 0.00 0.00 35.98 3.18
3354 3502 5.897050 GTGGAACCAACACTAATTGAACAA 58.103 37.500 0.00 0.00 35.98 2.83
3365 3513 7.217200 ACACTAATTGAACAAGCTCAACTAGA 58.783 34.615 8.39 0.00 37.33 2.43
3371 3519 9.453572 AATTGAACAAGCTCAACTAGATAATCA 57.546 29.630 0.00 0.00 38.12 2.57
3567 3717 0.109132 AGGCGCTGCAAAAATACTGC 60.109 50.000 7.64 0.00 40.35 4.40
3600 3751 3.748568 TCGCACAAACAACATATGCACTA 59.251 39.130 1.58 0.00 36.02 2.74
3608 3759 7.333423 ACAAACAACATATGCACTACGAACTAT 59.667 33.333 1.58 0.00 0.00 2.12
3807 4040 1.134699 TCATCATTCTCGCTGGTGTCC 60.135 52.381 0.00 0.00 0.00 4.02
3845 4078 1.084370 GCGTCTTCCCAACGAGGATG 61.084 60.000 0.00 0.00 42.62 3.51
3871 4105 1.827969 AGTCGAAGAATGACTCCCCAG 59.172 52.381 0.00 0.00 42.93 4.45
4092 4357 4.720902 TCACGGGGCGACGACCTA 62.721 66.667 21.47 0.00 37.61 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.419667 ACGGCGCTACAACTAATGTTT 58.580 42.857 6.90 0.00 43.63 2.83
1 2 2.088950 ACGGCGCTACAACTAATGTT 57.911 45.000 6.90 0.00 43.63 2.71
2 3 2.805845 CTACGGCGCTACAACTAATGT 58.194 47.619 6.90 0.00 46.36 2.71
3 4 1.521423 GCTACGGCGCTACAACTAATG 59.479 52.381 6.90 0.00 0.00 1.90
4 5 1.135527 TGCTACGGCGCTACAACTAAT 59.864 47.619 6.90 0.00 42.25 1.73
5 6 0.527113 TGCTACGGCGCTACAACTAA 59.473 50.000 6.90 0.00 42.25 2.24
6 7 0.527113 TTGCTACGGCGCTACAACTA 59.473 50.000 6.90 0.00 42.25 2.24
7 8 0.108329 ATTGCTACGGCGCTACAACT 60.108 50.000 6.90 0.00 42.25 3.16
8 9 1.521423 CTATTGCTACGGCGCTACAAC 59.479 52.381 6.90 0.00 42.25 3.32
9 10 1.847818 CTATTGCTACGGCGCTACAA 58.152 50.000 6.90 9.32 42.25 2.41
10 11 0.596600 GCTATTGCTACGGCGCTACA 60.597 55.000 6.90 0.00 42.25 2.74
11 12 1.606350 CGCTATTGCTACGGCGCTAC 61.606 60.000 6.90 0.00 41.08 3.58
12 13 1.371267 CGCTATTGCTACGGCGCTA 60.371 57.895 6.90 0.00 41.08 4.26
13 14 2.658593 CGCTATTGCTACGGCGCT 60.659 61.111 6.90 0.00 41.08 5.92
16 17 3.702555 CCGCGCTATTGCTACGGC 61.703 66.667 15.05 2.74 44.91 5.68
18 19 3.702555 GCCCGCGCTATTGCTACG 61.703 66.667 5.56 1.24 36.97 3.51
19 20 2.280186 AGCCCGCGCTATTGCTAC 60.280 61.111 5.56 0.00 46.08 3.58
28 29 0.741927 TACTAGGAAAAAGCCCGCGC 60.742 55.000 0.00 0.00 0.00 6.86
29 30 1.287425 CTACTAGGAAAAAGCCCGCG 58.713 55.000 0.00 0.00 0.00 6.46
30 31 2.007608 CACTACTAGGAAAAAGCCCGC 58.992 52.381 0.00 0.00 0.00 6.13
31 32 2.629051 CCACTACTAGGAAAAAGCCCG 58.371 52.381 0.00 0.00 0.00 6.13
32 33 2.944542 GCCCACTACTAGGAAAAAGCCC 60.945 54.545 0.00 0.00 0.00 5.19
33 34 2.366533 GCCCACTACTAGGAAAAAGCC 58.633 52.381 0.00 0.00 0.00 4.35
34 35 2.007608 CGCCCACTACTAGGAAAAAGC 58.992 52.381 0.00 0.00 0.00 3.51
35 36 3.000727 CACGCCCACTACTAGGAAAAAG 58.999 50.000 0.00 0.00 0.00 2.27
36 37 2.633967 TCACGCCCACTACTAGGAAAAA 59.366 45.455 0.00 0.00 0.00 1.94
37 38 2.232941 CTCACGCCCACTACTAGGAAAA 59.767 50.000 0.00 0.00 0.00 2.29
38 39 1.822990 CTCACGCCCACTACTAGGAAA 59.177 52.381 0.00 0.00 0.00 3.13
39 40 1.272313 ACTCACGCCCACTACTAGGAA 60.272 52.381 0.00 0.00 0.00 3.36
40 41 0.330604 ACTCACGCCCACTACTAGGA 59.669 55.000 0.00 0.00 0.00 2.94
41 42 0.456221 CACTCACGCCCACTACTAGG 59.544 60.000 0.00 0.00 0.00 3.02
42 43 0.456221 CCACTCACGCCCACTACTAG 59.544 60.000 0.00 0.00 0.00 2.57
43 44 0.968901 CCCACTCACGCCCACTACTA 60.969 60.000 0.00 0.00 0.00 1.82
44 45 2.283529 CCCACTCACGCCCACTACT 61.284 63.158 0.00 0.00 0.00 2.57
45 46 2.227089 CTCCCACTCACGCCCACTAC 62.227 65.000 0.00 0.00 0.00 2.73
46 47 1.982395 CTCCCACTCACGCCCACTA 60.982 63.158 0.00 0.00 0.00 2.74
47 48 3.314331 CTCCCACTCACGCCCACT 61.314 66.667 0.00 0.00 0.00 4.00
48 49 4.394712 CCTCCCACTCACGCCCAC 62.395 72.222 0.00 0.00 0.00 4.61
51 52 3.775654 CTCCCTCCCACTCACGCC 61.776 72.222 0.00 0.00 0.00 5.68
52 53 2.680352 TCTCCCTCCCACTCACGC 60.680 66.667 0.00 0.00 0.00 5.34
53 54 2.055042 CCTCTCCCTCCCACTCACG 61.055 68.421 0.00 0.00 0.00 4.35
54 55 1.687493 CCCTCTCCCTCCCACTCAC 60.687 68.421 0.00 0.00 0.00 3.51
55 56 1.452226 TTCCCTCTCCCTCCCACTCA 61.452 60.000 0.00 0.00 0.00 3.41
56 57 0.689412 CTTCCCTCTCCCTCCCACTC 60.689 65.000 0.00 0.00 0.00 3.51
57 58 1.394151 CTTCCCTCTCCCTCCCACT 59.606 63.158 0.00 0.00 0.00 4.00
58 59 1.690985 CCTTCCCTCTCCCTCCCAC 60.691 68.421 0.00 0.00 0.00 4.61
59 60 1.460839 TTCCTTCCCTCTCCCTCCCA 61.461 60.000 0.00 0.00 0.00 4.37
60 61 0.253207 TTTCCTTCCCTCTCCCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
61 62 1.208706 CTTTCCTTCCCTCTCCCTCC 58.791 60.000 0.00 0.00 0.00 4.30
62 63 1.208706 CCTTTCCTTCCCTCTCCCTC 58.791 60.000 0.00 0.00 0.00 4.30
63 64 0.253394 CCCTTTCCTTCCCTCTCCCT 60.253 60.000 0.00 0.00 0.00 4.20
64 65 1.282653 CCCCTTTCCTTCCCTCTCCC 61.283 65.000 0.00 0.00 0.00 4.30
65 66 0.253207 TCCCCTTTCCTTCCCTCTCC 60.253 60.000 0.00 0.00 0.00 3.71
66 67 0.913205 GTCCCCTTTCCTTCCCTCTC 59.087 60.000 0.00 0.00 0.00 3.20
67 68 0.196118 TGTCCCCTTTCCTTCCCTCT 59.804 55.000 0.00 0.00 0.00 3.69
68 69 1.064389 CATGTCCCCTTTCCTTCCCTC 60.064 57.143 0.00 0.00 0.00 4.30
69 70 1.002857 CATGTCCCCTTTCCTTCCCT 58.997 55.000 0.00 0.00 0.00 4.20
70 71 0.684479 GCATGTCCCCTTTCCTTCCC 60.684 60.000 0.00 0.00 0.00 3.97
71 72 0.332972 AGCATGTCCCCTTTCCTTCC 59.667 55.000 0.00 0.00 0.00 3.46
72 73 2.422093 CCTAGCATGTCCCCTTTCCTTC 60.422 54.545 0.00 0.00 0.00 3.46
73 74 1.566231 CCTAGCATGTCCCCTTTCCTT 59.434 52.381 0.00 0.00 0.00 3.36
74 75 1.216990 CCTAGCATGTCCCCTTTCCT 58.783 55.000 0.00 0.00 0.00 3.36
75 76 0.919710 ACCTAGCATGTCCCCTTTCC 59.080 55.000 0.00 0.00 0.00 3.13
76 77 2.239907 AGAACCTAGCATGTCCCCTTTC 59.760 50.000 0.00 0.00 0.00 2.62
77 78 2.025887 CAGAACCTAGCATGTCCCCTTT 60.026 50.000 0.00 0.00 0.00 3.11
78 79 1.561542 CAGAACCTAGCATGTCCCCTT 59.438 52.381 0.00 0.00 0.00 3.95
79 80 1.207791 CAGAACCTAGCATGTCCCCT 58.792 55.000 0.00 0.00 0.00 4.79
80 81 0.464554 GCAGAACCTAGCATGTCCCC 60.465 60.000 0.00 0.00 0.00 4.81
81 82 0.464554 GGCAGAACCTAGCATGTCCC 60.465 60.000 0.00 0.00 34.51 4.46
82 83 0.811616 CGGCAGAACCTAGCATGTCC 60.812 60.000 0.00 0.00 35.61 4.02
83 84 1.432270 GCGGCAGAACCTAGCATGTC 61.432 60.000 0.00 0.00 35.61 3.06
84 85 1.450312 GCGGCAGAACCTAGCATGT 60.450 57.895 0.00 0.00 35.61 3.21
85 86 2.182842 GGCGGCAGAACCTAGCATG 61.183 63.158 3.07 0.00 35.61 4.06
86 87 2.190578 GGCGGCAGAACCTAGCAT 59.809 61.111 3.07 0.00 35.61 3.79
87 88 4.451150 CGGCGGCAGAACCTAGCA 62.451 66.667 10.53 0.00 35.61 3.49
101 102 1.088910 TATTTAAACCGGACGGCGGC 61.089 55.000 9.46 8.60 39.32 6.53
102 103 0.932399 CTATTTAAACCGGACGGCGG 59.068 55.000 9.46 0.00 39.32 6.13
103 104 1.589779 GTCTATTTAAACCGGACGGCG 59.410 52.381 9.46 4.80 39.32 6.46
104 105 1.589779 CGTCTATTTAAACCGGACGGC 59.410 52.381 21.34 0.00 43.69 5.68
106 107 2.195922 CCCGTCTATTTAAACCGGACG 58.804 52.381 21.78 21.78 45.92 4.79
107 108 1.935873 GCCCGTCTATTTAAACCGGAC 59.064 52.381 9.46 11.00 41.08 4.79
108 109 1.832998 AGCCCGTCTATTTAAACCGGA 59.167 47.619 9.46 0.00 41.08 5.14
109 110 2.320745 AGCCCGTCTATTTAAACCGG 57.679 50.000 0.00 0.00 38.39 5.28
110 111 2.223180 GCAAGCCCGTCTATTTAAACCG 60.223 50.000 0.00 0.00 0.00 4.44
111 112 3.014623 AGCAAGCCCGTCTATTTAAACC 58.985 45.455 0.00 0.00 0.00 3.27
112 113 3.064958 GGAGCAAGCCCGTCTATTTAAAC 59.935 47.826 0.00 0.00 0.00 2.01
113 114 3.275999 GGAGCAAGCCCGTCTATTTAAA 58.724 45.455 0.00 0.00 0.00 1.52
114 115 2.420967 GGGAGCAAGCCCGTCTATTTAA 60.421 50.000 0.00 0.00 38.58 1.52
115 116 1.140252 GGGAGCAAGCCCGTCTATTTA 59.860 52.381 0.00 0.00 38.58 1.40
116 117 0.107165 GGGAGCAAGCCCGTCTATTT 60.107 55.000 0.00 0.00 38.58 1.40
117 118 1.527370 GGGAGCAAGCCCGTCTATT 59.473 57.895 0.00 0.00 38.58 1.73
118 119 3.231298 GGGAGCAAGCCCGTCTAT 58.769 61.111 0.00 0.00 38.58 1.98
157 158 0.241749 ATTCATTGCACTGCGTGGTG 59.758 50.000 0.00 5.57 39.91 4.17
158 159 0.241749 CATTCATTGCACTGCGTGGT 59.758 50.000 0.00 0.00 33.64 4.16
159 160 0.241749 ACATTCATTGCACTGCGTGG 59.758 50.000 0.00 0.00 33.64 4.94
160 161 1.333115 CACATTCATTGCACTGCGTG 58.667 50.000 0.00 3.37 36.51 5.34
161 162 0.953727 ACACATTCATTGCACTGCGT 59.046 45.000 0.00 0.00 0.00 5.24
162 163 1.609932 GACACATTCATTGCACTGCG 58.390 50.000 0.00 0.00 0.00 5.18
163 164 1.270274 TGGACACATTCATTGCACTGC 59.730 47.619 0.00 0.00 0.00 4.40
164 165 2.293955 TGTGGACACATTCATTGCACTG 59.706 45.455 0.13 0.00 36.21 3.66
165 166 2.294233 GTGTGGACACATTCATTGCACT 59.706 45.455 8.54 0.00 45.75 4.40
166 167 2.664916 GTGTGGACACATTCATTGCAC 58.335 47.619 8.54 0.00 45.75 4.57
177 178 1.663702 CGGTTCTCGGTGTGGACAC 60.664 63.158 0.99 0.99 45.72 3.67
178 179 1.393487 TTCGGTTCTCGGTGTGGACA 61.393 55.000 0.00 0.00 39.77 4.02
179 180 0.666577 CTTCGGTTCTCGGTGTGGAC 60.667 60.000 0.00 0.00 39.77 4.02
180 181 1.663739 CTTCGGTTCTCGGTGTGGA 59.336 57.895 0.00 0.00 39.77 4.02
181 182 1.374252 CCTTCGGTTCTCGGTGTGG 60.374 63.158 0.00 0.00 39.77 4.17
182 183 0.388649 CTCCTTCGGTTCTCGGTGTG 60.389 60.000 0.00 0.00 39.77 3.82
183 184 1.533469 CCTCCTTCGGTTCTCGGTGT 61.533 60.000 0.00 0.00 39.77 4.16
184 185 1.215647 CCTCCTTCGGTTCTCGGTG 59.784 63.158 0.00 0.00 39.77 4.94
185 186 2.647158 GCCTCCTTCGGTTCTCGGT 61.647 63.158 0.00 0.00 39.77 4.69
186 187 2.184579 GCCTCCTTCGGTTCTCGG 59.815 66.667 0.00 0.00 39.77 4.63
187 188 2.202623 CGCCTCCTTCGGTTCTCG 60.203 66.667 0.00 0.00 40.90 4.04
188 189 2.509561 GCGCCTCCTTCGGTTCTC 60.510 66.667 0.00 0.00 0.00 2.87
189 190 4.083862 GGCGCCTCCTTCGGTTCT 62.084 66.667 22.15 0.00 0.00 3.01
193 194 4.918201 GATGGGCGCCTCCTTCGG 62.918 72.222 28.56 0.00 34.39 4.30
194 195 4.918201 GGATGGGCGCCTCCTTCG 62.918 72.222 28.56 0.00 33.31 3.79
195 196 3.797353 TGGATGGGCGCCTCCTTC 61.797 66.667 29.08 19.32 34.39 3.46
196 197 4.115199 GTGGATGGGCGCCTCCTT 62.115 66.667 29.08 12.70 34.39 3.36
199 200 4.864334 CTGGTGGATGGGCGCCTC 62.864 72.222 28.56 17.32 0.00 4.70
202 203 2.252072 TAAGACTGGTGGATGGGCGC 62.252 60.000 0.00 0.00 0.00 6.53
203 204 0.179073 CTAAGACTGGTGGATGGGCG 60.179 60.000 0.00 0.00 0.00 6.13
204 205 0.181350 CCTAAGACTGGTGGATGGGC 59.819 60.000 0.00 0.00 0.00 5.36
205 206 0.839946 CCCTAAGACTGGTGGATGGG 59.160 60.000 0.00 0.00 0.00 4.00
206 207 1.210478 CACCCTAAGACTGGTGGATGG 59.790 57.143 3.06 0.00 46.67 3.51
207 208 2.698855 CACCCTAAGACTGGTGGATG 57.301 55.000 3.06 0.00 46.67 3.51
212 213 1.542187 GGTCGCACCCTAAGACTGGT 61.542 60.000 0.00 0.00 35.42 4.00
213 214 1.218316 GGTCGCACCCTAAGACTGG 59.782 63.158 0.00 0.00 35.42 4.00
214 215 1.153823 CGGTCGCACCCTAAGACTG 60.154 63.158 0.50 0.00 33.75 3.51
215 216 1.605738 ACGGTCGCACCCTAAGACT 60.606 57.895 0.00 0.00 33.75 3.24
216 217 1.445582 CACGGTCGCACCCTAAGAC 60.446 63.158 0.00 0.00 33.75 3.01
217 218 1.904865 ACACGGTCGCACCCTAAGA 60.905 57.895 0.00 0.00 33.75 2.10
218 219 1.736645 CACACGGTCGCACCCTAAG 60.737 63.158 0.00 0.00 33.75 2.18
219 220 2.340809 CACACGGTCGCACCCTAA 59.659 61.111 0.00 0.00 33.75 2.69
220 221 3.687102 CCACACGGTCGCACCCTA 61.687 66.667 0.00 0.00 33.75 3.53
227 228 3.697747 TAAGGGCCCACACGGTCG 61.698 66.667 27.56 0.00 36.95 4.79
228 229 2.046604 GTAAGGGCCCACACGGTC 60.047 66.667 27.56 2.83 34.35 4.79
229 230 4.011517 CGTAAGGGCCCACACGGT 62.012 66.667 30.61 6.71 0.00 4.83
230 231 2.530958 AATCGTAAGGGCCCACACGG 62.531 60.000 34.51 22.05 35.21 4.94
231 232 0.176219 TAATCGTAAGGGCCCACACG 59.824 55.000 31.76 31.76 38.47 4.49
232 233 1.208776 ACTAATCGTAAGGGCCCACAC 59.791 52.381 27.56 19.93 38.47 3.82
233 234 1.483415 GACTAATCGTAAGGGCCCACA 59.517 52.381 27.56 8.15 38.47 4.17
234 235 1.202615 GGACTAATCGTAAGGGCCCAC 60.203 57.143 27.56 14.07 38.47 4.61
235 236 1.125633 GGACTAATCGTAAGGGCCCA 58.874 55.000 27.56 1.75 38.47 5.36
236 237 1.125633 TGGACTAATCGTAAGGGCCC 58.874 55.000 16.46 16.46 38.47 5.80
237 238 2.104281 ACATGGACTAATCGTAAGGGCC 59.896 50.000 0.00 0.00 38.47 5.80
238 239 3.131396 CACATGGACTAATCGTAAGGGC 58.869 50.000 0.00 0.00 38.47 5.19
239 240 3.728845 CCACATGGACTAATCGTAAGGG 58.271 50.000 0.00 0.00 37.39 3.95
240 241 3.131396 GCCACATGGACTAATCGTAAGG 58.869 50.000 0.87 0.00 37.39 2.69
241 242 3.792401 TGCCACATGGACTAATCGTAAG 58.208 45.455 0.87 0.00 37.39 2.34
242 243 3.897141 TGCCACATGGACTAATCGTAA 57.103 42.857 0.87 0.00 37.39 3.18
243 244 3.792401 CTTGCCACATGGACTAATCGTA 58.208 45.455 0.87 0.00 37.39 3.43
244 245 2.632377 CTTGCCACATGGACTAATCGT 58.368 47.619 0.87 0.00 37.39 3.73
245 246 1.331756 GCTTGCCACATGGACTAATCG 59.668 52.381 0.87 0.00 37.39 3.34
246 247 2.098117 GTGCTTGCCACATGGACTAATC 59.902 50.000 0.87 0.00 44.06 1.75
247 248 2.094675 GTGCTTGCCACATGGACTAAT 58.905 47.619 0.87 0.00 44.06 1.73
248 249 1.533625 GTGCTTGCCACATGGACTAA 58.466 50.000 0.87 0.00 44.06 2.24
249 250 0.322456 GGTGCTTGCCACATGGACTA 60.322 55.000 0.87 0.00 46.50 2.59
250 251 1.604593 GGTGCTTGCCACATGGACT 60.605 57.895 0.87 0.00 46.50 3.85
251 252 1.589716 GAGGTGCTTGCCACATGGAC 61.590 60.000 0.87 0.00 46.50 4.02
252 253 1.303561 GAGGTGCTTGCCACATGGA 60.304 57.895 0.87 0.00 46.50 3.41
253 254 2.345760 GGAGGTGCTTGCCACATGG 61.346 63.158 0.00 0.00 46.50 3.66
254 255 1.592400 CTGGAGGTGCTTGCCACATG 61.592 60.000 0.00 0.00 46.50 3.21
255 256 1.303888 CTGGAGGTGCTTGCCACAT 60.304 57.895 0.00 0.00 46.50 3.21
256 257 2.113774 CTGGAGGTGCTTGCCACA 59.886 61.111 0.00 0.00 46.50 4.17
257 258 2.674380 CCTGGAGGTGCTTGCCAC 60.674 66.667 0.00 0.00 43.90 5.01
258 259 4.666253 GCCTGGAGGTGCTTGCCA 62.666 66.667 0.00 0.00 37.57 4.92
266 267 1.139058 GATATGTGAACGCCTGGAGGT 59.861 52.381 0.00 0.00 37.57 3.85
267 268 1.541233 GGATATGTGAACGCCTGGAGG 60.541 57.143 0.00 0.00 38.53 4.30
268 269 1.138859 TGGATATGTGAACGCCTGGAG 59.861 52.381 0.00 0.00 0.00 3.86
269 270 1.199615 TGGATATGTGAACGCCTGGA 58.800 50.000 0.00 0.00 0.00 3.86
270 271 2.146342 GATGGATATGTGAACGCCTGG 58.854 52.381 0.00 0.00 0.00 4.45
271 272 2.146342 GGATGGATATGTGAACGCCTG 58.854 52.381 0.00 0.00 0.00 4.85
272 273 2.050144 AGGATGGATATGTGAACGCCT 58.950 47.619 0.00 0.00 0.00 5.52
273 274 2.550830 AGGATGGATATGTGAACGCC 57.449 50.000 0.00 0.00 0.00 5.68
274 275 4.521130 TCTAGGATGGATATGTGAACGC 57.479 45.455 0.00 0.00 0.00 4.84
275 276 8.572185 CCTATATCTAGGATGGATATGTGAACG 58.428 40.741 0.00 0.00 46.86 3.95
276 277 8.364142 GCCTATATCTAGGATGGATATGTGAAC 58.636 40.741 8.32 0.00 46.86 3.18
277 278 7.510685 GGCCTATATCTAGGATGGATATGTGAA 59.489 40.741 8.32 0.00 46.86 3.18
278 279 7.013220 GGCCTATATCTAGGATGGATATGTGA 58.987 42.308 8.32 0.00 46.86 3.58
279 280 6.071672 CGGCCTATATCTAGGATGGATATGTG 60.072 46.154 8.32 0.08 46.86 3.21
280 281 6.013379 CGGCCTATATCTAGGATGGATATGT 58.987 44.000 8.32 0.00 46.86 2.29
281 282 5.420421 CCGGCCTATATCTAGGATGGATATG 59.580 48.000 8.32 0.00 46.86 1.78
283 284 4.202684 CCCGGCCTATATCTAGGATGGATA 60.203 50.000 8.32 0.00 46.66 2.59
284 285 3.438668 CCCGGCCTATATCTAGGATGGAT 60.439 52.174 8.32 0.00 46.66 3.41
285 286 2.091278 CCCGGCCTATATCTAGGATGGA 60.091 54.545 8.32 0.00 46.66 3.41
286 287 2.320781 CCCGGCCTATATCTAGGATGG 58.679 57.143 8.32 7.95 46.66 3.51
287 288 3.033659 ACCCGGCCTATATCTAGGATG 57.966 52.381 8.32 0.00 46.66 3.51
288 289 3.140519 CCTACCCGGCCTATATCTAGGAT 59.859 52.174 8.32 0.00 46.66 3.24
289 290 2.512896 CCTACCCGGCCTATATCTAGGA 59.487 54.545 8.32 0.00 46.66 2.94
290 291 2.424523 CCCTACCCGGCCTATATCTAGG 60.425 59.091 0.00 0.00 46.48 3.02
291 292 2.512896 TCCCTACCCGGCCTATATCTAG 59.487 54.545 0.00 0.00 0.00 2.43
292 293 2.512896 CTCCCTACCCGGCCTATATCTA 59.487 54.545 0.00 0.00 0.00 1.98
293 294 1.288335 CTCCCTACCCGGCCTATATCT 59.712 57.143 0.00 0.00 0.00 1.98
294 295 1.287146 TCTCCCTACCCGGCCTATATC 59.713 57.143 0.00 0.00 0.00 1.63
295 296 1.288335 CTCTCCCTACCCGGCCTATAT 59.712 57.143 0.00 0.00 0.00 0.86
296 297 0.702902 CTCTCCCTACCCGGCCTATA 59.297 60.000 0.00 0.00 0.00 1.31
297 298 1.369855 ACTCTCCCTACCCGGCCTAT 61.370 60.000 0.00 0.00 0.00 2.57
298 299 2.011044 ACTCTCCCTACCCGGCCTA 61.011 63.158 0.00 0.00 0.00 3.93
299 300 3.357082 ACTCTCCCTACCCGGCCT 61.357 66.667 0.00 0.00 0.00 5.19
300 301 3.155167 CACTCTCCCTACCCGGCC 61.155 72.222 0.00 0.00 0.00 6.13
301 302 3.851128 GCACTCTCCCTACCCGGC 61.851 72.222 0.00 0.00 0.00 6.13
302 303 3.155167 GGCACTCTCCCTACCCGG 61.155 72.222 0.00 0.00 0.00 5.73
303 304 3.528370 CGGCACTCTCCCTACCCG 61.528 72.222 0.00 0.00 0.00 5.28
304 305 2.363925 ACGGCACTCTCCCTACCC 60.364 66.667 0.00 0.00 0.00 3.69
305 306 1.946475 GACACGGCACTCTCCCTACC 61.946 65.000 0.00 0.00 0.00 3.18
306 307 1.511768 GACACGGCACTCTCCCTAC 59.488 63.158 0.00 0.00 0.00 3.18
307 308 1.681327 GGACACGGCACTCTCCCTA 60.681 63.158 0.00 0.00 0.00 3.53
308 309 2.997897 GGACACGGCACTCTCCCT 60.998 66.667 0.00 0.00 0.00 4.20
309 310 3.302347 CTGGACACGGCACTCTCCC 62.302 68.421 0.00 0.00 0.00 4.30
310 311 2.100879 AACTGGACACGGCACTCTCC 62.101 60.000 0.00 0.00 0.00 3.71
311 312 0.249911 AAACTGGACACGGCACTCTC 60.250 55.000 0.00 0.00 0.00 3.20
312 313 0.180406 AAAACTGGACACGGCACTCT 59.820 50.000 0.00 0.00 0.00 3.24
313 314 1.021968 AAAAACTGGACACGGCACTC 58.978 50.000 0.00 0.00 0.00 3.51
314 315 3.184736 AAAAACTGGACACGGCACT 57.815 47.368 0.00 0.00 0.00 4.40
330 331 1.133407 GACAACACGTTCAGCCCAAAA 59.867 47.619 0.00 0.00 0.00 2.44
337 338 2.791560 CTCTGTCAGACAACACGTTCAG 59.208 50.000 4.41 0.00 0.00 3.02
353 354 3.148279 GGACCGCCCGATCTCTGT 61.148 66.667 0.00 0.00 0.00 3.41
366 367 2.192187 CCGTACCTCTAGGCGGACC 61.192 68.421 8.85 0.00 41.47 4.46
370 371 1.228490 ATCCCCGTACCTCTAGGCG 60.228 63.158 0.00 0.00 39.32 5.52
398 410 7.319646 AGATCCATCGACTAAATAAGAGCATC 58.680 38.462 0.00 0.00 0.00 3.91
400 412 6.568653 CGAGATCCATCGACTAAATAAGAGCA 60.569 42.308 0.00 0.00 45.56 4.26
472 484 3.680490 ACTCTCTTCACGTCTGATCTCA 58.320 45.455 0.00 0.00 0.00 3.27
473 485 4.155099 TCAACTCTCTTCACGTCTGATCTC 59.845 45.833 0.00 0.00 0.00 2.75
474 486 4.075682 TCAACTCTCTTCACGTCTGATCT 58.924 43.478 0.00 0.00 0.00 2.75
475 487 4.427096 TCAACTCTCTTCACGTCTGATC 57.573 45.455 0.00 0.00 0.00 2.92
477 489 3.612717 GCATCAACTCTCTTCACGTCTGA 60.613 47.826 0.00 0.00 0.00 3.27
478 490 2.665537 GCATCAACTCTCTTCACGTCTG 59.334 50.000 0.00 0.00 0.00 3.51
479 491 2.297315 TGCATCAACTCTCTTCACGTCT 59.703 45.455 0.00 0.00 0.00 4.18
480 492 2.665537 CTGCATCAACTCTCTTCACGTC 59.334 50.000 0.00 0.00 0.00 4.34
481 493 2.297315 TCTGCATCAACTCTCTTCACGT 59.703 45.455 0.00 0.00 0.00 4.49
482 494 2.951726 TCTGCATCAACTCTCTTCACG 58.048 47.619 0.00 0.00 0.00 4.35
483 495 4.934001 TGAATCTGCATCAACTCTCTTCAC 59.066 41.667 0.00 0.00 0.00 3.18
484 496 4.934001 GTGAATCTGCATCAACTCTCTTCA 59.066 41.667 0.00 0.00 0.00 3.02
485 497 4.332268 GGTGAATCTGCATCAACTCTCTTC 59.668 45.833 0.00 0.00 31.69 2.87
486 498 4.260170 GGTGAATCTGCATCAACTCTCTT 58.740 43.478 0.00 0.00 31.69 2.85
487 499 3.678252 CGGTGAATCTGCATCAACTCTCT 60.678 47.826 2.56 0.00 32.22 3.10
488 500 2.606725 CGGTGAATCTGCATCAACTCTC 59.393 50.000 2.56 0.00 32.22 3.20
489 501 2.234661 TCGGTGAATCTGCATCAACTCT 59.765 45.455 2.56 0.00 32.22 3.24
490 502 2.606725 CTCGGTGAATCTGCATCAACTC 59.393 50.000 2.56 0.00 32.22 3.01
491 503 2.027745 ACTCGGTGAATCTGCATCAACT 60.028 45.455 2.56 0.00 32.22 3.16
492 504 2.350522 ACTCGGTGAATCTGCATCAAC 58.649 47.619 0.00 0.00 0.00 3.18
493 505 2.768253 ACTCGGTGAATCTGCATCAA 57.232 45.000 0.00 0.00 0.00 2.57
494 506 3.885724 TTACTCGGTGAATCTGCATCA 57.114 42.857 0.00 0.00 0.00 3.07
495 507 3.743396 GGATTACTCGGTGAATCTGCATC 59.257 47.826 0.00 0.00 33.41 3.91
496 508 3.733337 GGATTACTCGGTGAATCTGCAT 58.267 45.455 0.00 0.00 33.41 3.96
497 509 2.481276 CGGATTACTCGGTGAATCTGCA 60.481 50.000 0.00 0.00 33.02 4.41
498 510 2.128035 CGGATTACTCGGTGAATCTGC 58.872 52.381 0.00 0.00 33.02 4.26
499 511 2.743938 CCGGATTACTCGGTGAATCTG 58.256 52.381 0.00 0.00 42.33 2.90
508 520 2.649331 ATTATCGGCCGGATTACTCG 57.351 50.000 27.83 0.00 36.55 4.18
509 521 4.143179 CGAAAATTATCGGCCGGATTACTC 60.143 45.833 27.83 18.83 39.12 2.59
510 522 3.744426 CGAAAATTATCGGCCGGATTACT 59.256 43.478 27.83 13.25 39.12 2.24
528 540 2.431942 GCGCGGGAGAAGACGAAA 60.432 61.111 8.83 0.00 0.00 3.46
529 541 4.771356 CGCGCGGGAGAAGACGAA 62.771 66.667 24.84 0.00 0.00 3.85
557 569 2.846193 ACAGTTACATGCAAACCGTCT 58.154 42.857 7.68 0.00 0.00 4.18
630 672 2.811317 GCTTCGTGGCCGAGACTG 60.811 66.667 0.00 0.00 45.24 3.51
631 673 3.288308 CTGCTTCGTGGCCGAGACT 62.288 63.158 0.00 0.00 45.24 3.24
632 674 2.811317 CTGCTTCGTGGCCGAGAC 60.811 66.667 0.00 0.00 45.24 3.36
638 680 1.905922 GAACTGCTCTGCTTCGTGGC 61.906 60.000 0.00 0.00 0.00 5.01
654 696 0.954452 CTCCAAGTGGTTGCAGGAAC 59.046 55.000 0.00 0.00 36.34 3.62
668 710 4.402793 CGTTCCTCCTTCTATTCTCTCCAA 59.597 45.833 0.00 0.00 0.00 3.53
669 711 3.954904 CGTTCCTCCTTCTATTCTCTCCA 59.045 47.826 0.00 0.00 0.00 3.86
670 712 3.319689 CCGTTCCTCCTTCTATTCTCTCC 59.680 52.174 0.00 0.00 0.00 3.71
674 716 3.707102 CCTTCCGTTCCTCCTTCTATTCT 59.293 47.826 0.00 0.00 0.00 2.40
675 717 3.181464 CCCTTCCGTTCCTCCTTCTATTC 60.181 52.174 0.00 0.00 0.00 1.75
676 718 2.772515 CCCTTCCGTTCCTCCTTCTATT 59.227 50.000 0.00 0.00 0.00 1.73
677 719 2.023307 TCCCTTCCGTTCCTCCTTCTAT 60.023 50.000 0.00 0.00 0.00 1.98
678 720 1.360162 TCCCTTCCGTTCCTCCTTCTA 59.640 52.381 0.00 0.00 0.00 2.10
689 731 3.649502 TCTTTTCTTTACCTCCCTTCCGT 59.350 43.478 0.00 0.00 0.00 4.69
697 739 9.026074 CGATATGTTCTCTCTTTTCTTTACCTC 57.974 37.037 0.00 0.00 0.00 3.85
705 747 5.233263 GCCAGTCGATATGTTCTCTCTTTTC 59.767 44.000 0.00 0.00 0.00 2.29
711 754 3.243234 CGAAGCCAGTCGATATGTTCTCT 60.243 47.826 0.00 0.00 43.86 3.10
730 773 0.891449 TTTGCGGCCAGGAAATCGAA 60.891 50.000 2.24 0.00 35.19 3.71
801 859 2.541178 GGTTGCTACAGGTATCGACGAG 60.541 54.545 3.01 0.00 0.00 4.18
866 938 2.763448 TGGTCATCATCATCGGTACACA 59.237 45.455 0.00 0.00 0.00 3.72
989 1075 3.058160 CTTGTCCTTGCGGCCCAG 61.058 66.667 0.00 0.00 0.00 4.45
990 1076 3.429372 AACTTGTCCTTGCGGCCCA 62.429 57.895 0.00 0.00 0.00 5.36
991 1077 2.597510 AACTTGTCCTTGCGGCCC 60.598 61.111 0.00 0.00 0.00 5.80
1039 1133 2.125147 ACGTCCATGGTGCCGATG 60.125 61.111 21.84 7.88 0.00 3.84
1141 1242 2.777972 CCGCTCCGACCGGTTGATA 61.778 63.158 24.20 9.89 40.84 2.15
1351 1455 1.352156 CTGCTAGGACGCGGTTGAAC 61.352 60.000 12.47 0.00 0.00 3.18
1424 1528 1.968017 CGGTGTGGAACTGCAGCAT 60.968 57.895 15.27 2.22 38.04 3.79
1494 1598 2.257286 CTGCGCGATGTCCCTTTTGG 62.257 60.000 12.10 0.00 39.97 3.28
1915 2019 1.512156 CGGTGAACTGGTTTTCCCCG 61.512 60.000 0.00 0.00 39.62 5.73
1921 2028 2.702592 TGAACTCGGTGAACTGGTTT 57.297 45.000 0.00 0.00 0.00 3.27
2272 2379 2.338984 GTGTCCCGTCGCTTGAGT 59.661 61.111 0.00 0.00 0.00 3.41
2413 2520 0.179073 CATCTCGCCGGATGTCCTTT 60.179 55.000 5.05 0.00 38.49 3.11
2572 2679 0.959372 AGAACATCTCGTCGACGGGT 60.959 55.000 34.66 24.12 41.39 5.28
3002 3115 2.607038 GGAACGTTGTCTTGAAATGGCC 60.607 50.000 5.00 0.00 0.00 5.36
3208 3323 5.117135 GCTCTCGCCAAACAAGTTTTATTTC 59.883 40.000 0.00 0.00 0.00 2.17
3260 3375 7.234384 ACTACGCTTCAAAAGAAATCGTATTG 58.766 34.615 10.55 0.00 30.90 1.90
3389 3537 7.467403 GCTCTTGGCAAACTTGATAGTATTACC 60.467 40.741 0.00 0.00 41.35 2.85
3392 3540 6.442513 GCTCTTGGCAAACTTGATAGTATT 57.557 37.500 0.00 0.00 41.35 1.89
3409 3557 0.107606 AGCTGCTGGAGATGCTCTTG 60.108 55.000 0.00 0.00 0.00 3.02
3477 3625 2.411290 CCGTGCCACGCAAAAACT 59.589 55.556 12.68 0.00 41.47 2.66
3574 3724 3.120199 GCATATGTTGTTTGTGCGAGAGT 60.120 43.478 4.29 0.00 0.00 3.24
3711 3893 6.532657 CCGTAGTAGTTTTTATCGTGTTGGAT 59.467 38.462 0.00 0.00 0.00 3.41
3807 4040 0.875728 CGTGGCTCTATACCTCGGAG 59.124 60.000 0.00 0.00 39.78 4.63
3845 4078 3.859411 AGTCATTCTTCGACTCAGACC 57.141 47.619 0.00 0.00 39.56 3.85
4014 4250 2.887568 GACGAGCGAGCCATGGTG 60.888 66.667 14.67 4.98 0.00 4.17
4117 4382 1.089920 GCGTGCAGATGAACTTCCAT 58.910 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.