Multiple sequence alignment - TraesCS1D01G086200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G086200 chr1D 100.000 2303 0 0 1 2303 70566008 70563706 0.000000e+00 4253.0
1 TraesCS1D01G086200 chr1B 92.372 2268 112 31 3 2233 111973618 111971375 0.000000e+00 3173.0
2 TraesCS1D01G086200 chr1A 95.763 590 20 4 3 591 71069984 71069399 0.000000e+00 946.0
3 TraesCS1D01G086200 chr1A 89.609 741 61 6 768 1494 71060430 71059692 0.000000e+00 928.0
4 TraesCS1D01G086200 chr1A 97.396 192 4 1 586 776 71068993 71068802 2.210000e-85 326.0
5 TraesCS1D01G086200 chr3D 88.000 50 3 2 513 562 466747075 466747121 3.200000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G086200 chr1D 70563706 70566008 2302 True 4253 4253 100.0000 1 2303 1 chr1D.!!$R1 2302
1 TraesCS1D01G086200 chr1B 111971375 111973618 2243 True 3173 3173 92.3720 3 2233 1 chr1B.!!$R1 2230
2 TraesCS1D01G086200 chr1A 71059692 71060430 738 True 928 928 89.6090 768 1494 1 chr1A.!!$R1 726
3 TraesCS1D01G086200 chr1A 71068802 71069984 1182 True 636 946 96.5795 3 776 2 chr1A.!!$R2 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 529 0.537188 ATGCAGAGGTTGAGGTACGG 59.463 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2735 0.451783 GCTCGCCCTGTTTTGTATGG 59.548 55.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.959618 ACATGCTTACTTTTGGGTACTTC 57.040 39.130 0.00 0.00 0.00 3.01
77 78 2.567169 TCAACCCGATCACTTCTCACAT 59.433 45.455 0.00 0.00 0.00 3.21
348 372 9.869844 CATGAGATTTATTTAACTGATTCGGAC 57.130 33.333 0.00 0.00 0.00 4.79
501 529 0.537188 ATGCAGAGGTTGAGGTACGG 59.463 55.000 0.00 0.00 0.00 4.02
545 574 7.255977 CCCTCGAGAAATTAGGTCATCAATCTA 60.256 40.741 15.71 0.00 0.00 1.98
546 575 7.596995 CCTCGAGAAATTAGGTCATCAATCTAC 59.403 40.741 15.71 0.00 0.00 2.59
547 576 8.007405 TCGAGAAATTAGGTCATCAATCTACA 57.993 34.615 0.00 0.00 0.00 2.74
625 1065 7.824289 TCTTTTCTGGTTCTATACTTGTCCATG 59.176 37.037 0.00 0.00 0.00 3.66
795 1238 6.581171 AAAATGTGGTGAGAGAGAATTTCC 57.419 37.500 0.00 0.00 0.00 3.13
824 1267 8.952278 ACAAACATAAACCAAGCGAGAATAATA 58.048 29.630 0.00 0.00 0.00 0.98
835 1278 2.221055 CGAGAATAATACCACTTGCGCC 59.779 50.000 4.18 0.00 0.00 6.53
908 1351 1.330655 TTCCAGCCTAGCTAGCGCTT 61.331 55.000 25.27 0.00 46.47 4.68
968 1411 2.739609 GCCATCATAGCCCAAGCAAAAC 60.740 50.000 0.00 0.00 43.56 2.43
979 1422 4.623647 GCCCAAGCAAAACCACATATCAAT 60.624 41.667 0.00 0.00 39.53 2.57
990 1433 1.271379 ACATATCAATACCGGCAGCCC 60.271 52.381 5.63 0.00 0.00 5.19
1044 1487 2.365635 ATAGCCACGCCACCCTCT 60.366 61.111 0.00 0.00 0.00 3.69
1116 1559 0.604073 TTGTGACCAAGCCGTCGATA 59.396 50.000 0.00 0.00 35.40 2.92
1203 1646 1.949079 GCCAACACCAGTAAGGCTACC 60.949 57.143 0.00 0.00 42.55 3.18
1293 1736 2.690367 GAAGAGGCTCTTCCAGGGT 58.310 57.895 36.33 13.65 45.34 4.34
1316 1767 6.329496 GTCTGAAGTAGCTCCAGATATATGC 58.671 44.000 10.04 0.00 38.92 3.14
1323 1774 5.341872 AGCTCCAGATATATGCAGATGAC 57.658 43.478 3.54 0.00 0.00 3.06
1428 1884 4.600012 AAGATGTGCTATGTAAACGTGC 57.400 40.909 0.00 0.00 0.00 5.34
1464 1920 5.879237 TCGATCCACTTGTTGCAATTAATC 58.121 37.500 0.59 0.00 0.00 1.75
1479 1935 5.810587 GCAATTAATCGTGTGTCCTCTTAGA 59.189 40.000 0.00 0.00 0.00 2.10
1487 1943 4.694339 GTGTGTCCTCTTAGAAAGTGTGT 58.306 43.478 0.00 0.00 0.00 3.72
1518 1974 6.016108 AGTCCTCTTAGAAAGTGTGTAGTCAC 60.016 42.308 0.00 0.00 44.08 3.67
1619 2076 6.554334 TTTGGTTTGTTCACTGCTATACTC 57.446 37.500 0.00 0.00 0.00 2.59
1620 2077 4.242475 TGGTTTGTTCACTGCTATACTCG 58.758 43.478 0.00 0.00 0.00 4.18
1630 2087 6.859017 TCACTGCTATACTCGTATGTGAAAA 58.141 36.000 0.00 0.00 31.49 2.29
1717 2174 7.663081 ACATATATATCCAGTGCAAACAAGGAG 59.337 37.037 0.00 0.00 36.15 3.69
1718 2175 1.915141 ATCCAGTGCAAACAAGGAGG 58.085 50.000 0.00 0.00 36.15 4.30
1719 2176 0.843309 TCCAGTGCAAACAAGGAGGA 59.157 50.000 0.00 0.00 30.85 3.71
1777 2234 7.333423 CAGGCAAATGTCTTTCAAATCATCAAT 59.667 33.333 0.00 0.00 0.00 2.57
1805 2262 5.185828 AGGGTTTTCTTGGATGTAATCTTGC 59.814 40.000 0.00 0.00 44.71 4.01
1888 2345 2.675348 GCTTGATGTTGTGAGTAGCCTC 59.325 50.000 0.00 0.00 38.27 4.70
1956 2413 5.010617 TGCCTCCTTTCCATAGTTTGTTTTC 59.989 40.000 0.00 0.00 0.00 2.29
2146 2603 7.221067 CCTGTCGACAGACTTAAATATCAGTTC 59.779 40.741 40.21 0.00 46.59 3.01
2221 2681 8.392372 TGCGAGATAGTTAGACATATAGTTGT 57.608 34.615 0.00 0.00 0.00 3.32
2254 2714 6.847421 AAATTTCCCTCTTTCTCTTCATGG 57.153 37.500 0.00 0.00 0.00 3.66
2255 2715 5.527026 ATTTCCCTCTTTCTCTTCATGGT 57.473 39.130 0.00 0.00 0.00 3.55
2256 2716 5.324832 TTTCCCTCTTTCTCTTCATGGTT 57.675 39.130 0.00 0.00 0.00 3.67
2257 2717 5.324832 TTCCCTCTTTCTCTTCATGGTTT 57.675 39.130 0.00 0.00 0.00 3.27
2258 2718 4.655963 TCCCTCTTTCTCTTCATGGTTTG 58.344 43.478 0.00 0.00 0.00 2.93
2259 2719 3.760684 CCCTCTTTCTCTTCATGGTTTGG 59.239 47.826 0.00 0.00 0.00 3.28
2260 2720 3.192212 CCTCTTTCTCTTCATGGTTTGGC 59.808 47.826 0.00 0.00 0.00 4.52
2261 2721 2.813754 TCTTTCTCTTCATGGTTTGGCG 59.186 45.455 0.00 0.00 0.00 5.69
2262 2722 2.270352 TTCTCTTCATGGTTTGGCGT 57.730 45.000 0.00 0.00 0.00 5.68
2263 2723 3.410631 TTCTCTTCATGGTTTGGCGTA 57.589 42.857 0.00 0.00 0.00 4.42
2264 2724 2.695359 TCTCTTCATGGTTTGGCGTAC 58.305 47.619 0.00 0.00 0.00 3.67
2265 2725 2.301870 TCTCTTCATGGTTTGGCGTACT 59.698 45.455 0.00 0.00 0.00 2.73
2266 2726 3.074412 CTCTTCATGGTTTGGCGTACTT 58.926 45.455 0.00 0.00 0.00 2.24
2267 2727 2.811431 TCTTCATGGTTTGGCGTACTTG 59.189 45.455 0.00 0.00 0.00 3.16
2268 2728 2.264005 TCATGGTTTGGCGTACTTGT 57.736 45.000 0.00 0.00 0.00 3.16
2269 2729 1.876799 TCATGGTTTGGCGTACTTGTG 59.123 47.619 0.00 0.00 0.00 3.33
2270 2730 1.876799 CATGGTTTGGCGTACTTGTGA 59.123 47.619 0.00 0.00 0.00 3.58
2271 2731 2.039818 TGGTTTGGCGTACTTGTGAA 57.960 45.000 0.00 0.00 0.00 3.18
2272 2732 2.366533 TGGTTTGGCGTACTTGTGAAA 58.633 42.857 0.00 0.00 0.00 2.69
2273 2733 2.753452 TGGTTTGGCGTACTTGTGAAAA 59.247 40.909 0.00 0.00 0.00 2.29
2274 2734 3.381908 TGGTTTGGCGTACTTGTGAAAAT 59.618 39.130 0.00 0.00 0.00 1.82
2275 2735 3.978855 GGTTTGGCGTACTTGTGAAAATC 59.021 43.478 0.00 0.00 0.00 2.17
2276 2736 3.907894 TTGGCGTACTTGTGAAAATCC 57.092 42.857 0.00 0.00 0.00 3.01
2277 2737 2.852449 TGGCGTACTTGTGAAAATCCA 58.148 42.857 0.00 0.00 0.00 3.41
2278 2738 3.417101 TGGCGTACTTGTGAAAATCCAT 58.583 40.909 0.00 0.00 0.00 3.41
2279 2739 4.580868 TGGCGTACTTGTGAAAATCCATA 58.419 39.130 0.00 0.00 0.00 2.74
2280 2740 4.393680 TGGCGTACTTGTGAAAATCCATAC 59.606 41.667 0.00 0.00 0.00 2.39
2281 2741 4.393680 GGCGTACTTGTGAAAATCCATACA 59.606 41.667 0.00 0.00 0.00 2.29
2282 2742 5.106475 GGCGTACTTGTGAAAATCCATACAA 60.106 40.000 0.00 0.00 0.00 2.41
2283 2743 6.375377 GCGTACTTGTGAAAATCCATACAAA 58.625 36.000 0.00 0.00 33.19 2.83
2284 2744 6.858993 GCGTACTTGTGAAAATCCATACAAAA 59.141 34.615 0.00 0.00 33.19 2.44
2285 2745 7.149031 GCGTACTTGTGAAAATCCATACAAAAC 60.149 37.037 0.00 0.00 33.19 2.43
2286 2746 7.858382 CGTACTTGTGAAAATCCATACAAAACA 59.142 33.333 0.00 0.00 33.19 2.83
2287 2747 9.180678 GTACTTGTGAAAATCCATACAAAACAG 57.819 33.333 0.00 0.00 33.19 3.16
2288 2748 7.209475 ACTTGTGAAAATCCATACAAAACAGG 58.791 34.615 0.00 0.00 33.19 4.00
2289 2749 6.095432 TGTGAAAATCCATACAAAACAGGG 57.905 37.500 0.00 0.00 0.00 4.45
2290 2750 4.929211 GTGAAAATCCATACAAAACAGGGC 59.071 41.667 0.00 0.00 0.00 5.19
2291 2751 3.866883 AAATCCATACAAAACAGGGCG 57.133 42.857 0.00 0.00 0.00 6.13
2292 2752 2.799126 ATCCATACAAAACAGGGCGA 57.201 45.000 0.00 0.00 0.00 5.54
2293 2753 2.107950 TCCATACAAAACAGGGCGAG 57.892 50.000 0.00 0.00 0.00 5.03
2294 2754 0.451783 CCATACAAAACAGGGCGAGC 59.548 55.000 0.00 0.00 0.00 5.03
2295 2755 1.164411 CATACAAAACAGGGCGAGCA 58.836 50.000 0.00 0.00 0.00 4.26
2296 2756 1.539388 CATACAAAACAGGGCGAGCAA 59.461 47.619 0.00 0.00 0.00 3.91
2297 2757 1.234821 TACAAAACAGGGCGAGCAAG 58.765 50.000 0.00 0.00 0.00 4.01
2298 2758 1.286880 CAAAACAGGGCGAGCAAGG 59.713 57.895 0.00 0.00 0.00 3.61
2299 2759 2.564721 AAAACAGGGCGAGCAAGGC 61.565 57.895 0.00 0.00 0.00 4.35
2300 2760 3.790416 AAACAGGGCGAGCAAGGCA 62.790 57.895 7.26 0.00 38.57 4.75
2301 2761 3.790416 AACAGGGCGAGCAAGGCAA 62.790 57.895 7.26 0.00 38.57 4.52
2302 2762 2.753043 CAGGGCGAGCAAGGCAAT 60.753 61.111 7.26 0.00 38.57 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.096984 GGGTTGATTGGCTTCATAGTTCTG 59.903 45.833 0.00 0.00 0.00 3.02
77 78 4.763793 GGTACAGTACCTGTGAGAAGTACA 59.236 45.833 21.13 0.00 45.01 2.90
157 167 3.181480 TGGCTTTACTTTCAGTTTGGCAC 60.181 43.478 0.00 0.00 0.00 5.01
348 372 5.374071 ACTAATCTTATTGCTAAACCCCCG 58.626 41.667 0.00 0.00 0.00 5.73
410 435 7.645058 AAAAAGAAATCACAAAGGACTCTGA 57.355 32.000 0.00 0.00 0.00 3.27
451 479 5.061853 TGCACACACCATTTTATTGCAAAT 58.938 33.333 1.71 0.00 35.65 2.32
519 547 4.672587 TGATGACCTAATTTCTCGAGGG 57.327 45.455 13.56 7.11 34.41 4.30
520 548 6.520272 AGATTGATGACCTAATTTCTCGAGG 58.480 40.000 13.56 0.00 36.36 4.63
545 574 7.889073 TGTGTAAAGGAAGAGTCTAGACTATGT 59.111 37.037 25.23 13.14 42.66 2.29
546 575 8.185505 GTGTGTAAAGGAAGAGTCTAGACTATG 58.814 40.741 25.23 0.00 42.66 2.23
547 576 7.889073 TGTGTGTAAAGGAAGAGTCTAGACTAT 59.111 37.037 25.23 19.82 42.66 2.12
625 1065 3.294943 GCATCGATGTCATGCTTTAAGC 58.705 45.455 25.47 10.38 42.95 3.09
649 1090 6.458210 CCTCTGGTGCAAAAATATCAAGTTT 58.542 36.000 0.00 0.00 0.00 2.66
795 1238 3.879427 TCGCTTGGTTTATGTTTGTTCG 58.121 40.909 0.00 0.00 0.00 3.95
865 1308 4.457949 GTGATTCGGTGTGGTAGGATTTTT 59.542 41.667 0.00 0.00 0.00 1.94
866 1309 4.007659 GTGATTCGGTGTGGTAGGATTTT 58.992 43.478 0.00 0.00 0.00 1.82
885 1328 1.115467 GCTAGCTAGGCTGGAAGTGA 58.885 55.000 22.10 0.00 39.54 3.41
968 1411 1.806542 GCTGCCGGTATTGATATGTGG 59.193 52.381 1.90 0.00 0.00 4.17
1071 1514 1.018148 GGACGAGCTCGATCTTCTCA 58.982 55.000 40.58 0.00 43.02 3.27
1116 1559 2.502577 GGGTTGGCGCCGTAGTAT 59.497 61.111 23.90 0.00 0.00 2.12
1138 1581 1.028330 CGCCTCATGGTTGATGCTGT 61.028 55.000 0.00 0.00 40.24 4.40
1182 1625 1.060729 TAGCCTTACTGGTGTTGGCA 58.939 50.000 0.00 0.00 42.70 4.92
1316 1767 5.664457 TCAATAGTAGTGCAAGGTCATCTG 58.336 41.667 0.00 0.00 0.00 2.90
1323 1774 4.433615 ACGTGATCAATAGTAGTGCAAGG 58.566 43.478 0.00 0.00 0.00 3.61
1428 1884 3.003793 AGTGGATCGATATCACACGACAG 59.996 47.826 24.24 0.00 41.17 3.51
1464 1920 3.736252 CACACTTTCTAAGAGGACACACG 59.264 47.826 0.00 0.00 0.00 4.49
1479 1935 5.615925 AAGAGGACTTGACTACACACTTT 57.384 39.130 0.00 0.00 34.80 2.66
1487 1943 6.550108 ACACACTTTCTAAGAGGACTTGACTA 59.450 38.462 0.00 0.00 37.53 2.59
1579 2036 6.966534 AACCAAAACAATCTGAAGTCTGAT 57.033 33.333 0.00 0.00 36.31 2.90
1717 2174 1.996191 CTCTTGTTTGAGCGCTAGTCC 59.004 52.381 11.50 0.00 0.00 3.85
1718 2175 2.947852 TCTCTTGTTTGAGCGCTAGTC 58.052 47.619 11.50 0.00 34.29 2.59
1719 2176 3.386768 TTCTCTTGTTTGAGCGCTAGT 57.613 42.857 11.50 0.00 34.29 2.57
1777 2234 8.950007 AGATTACATCCAAGAAAACCCTTTTA 57.050 30.769 0.00 0.00 31.94 1.52
1782 2239 5.410924 GCAAGATTACATCCAAGAAAACCC 58.589 41.667 0.00 0.00 0.00 4.11
1805 2262 2.672714 TGACGATTTGAAGGACACTCG 58.327 47.619 0.00 0.00 38.80 4.18
1888 2345 1.554042 GGGTACTCACAACACGCACG 61.554 60.000 0.00 0.00 0.00 5.34
1934 2391 6.648879 TGAAAACAAACTATGGAAAGGAGG 57.351 37.500 0.00 0.00 0.00 4.30
2120 2577 6.565234 ACTGATATTTAAGTCTGTCGACAGG 58.435 40.000 37.82 22.94 43.91 4.00
2152 2609 8.747538 ACTGATAGTTAATTGGGGTAATTCAC 57.252 34.615 0.00 0.00 39.61 3.18
2229 2689 7.290948 ACCATGAAGAGAAAGAGGGAAATTTTT 59.709 33.333 0.00 0.00 0.00 1.94
2233 2693 5.527026 ACCATGAAGAGAAAGAGGGAAAT 57.473 39.130 0.00 0.00 0.00 2.17
2234 2694 5.324832 AACCATGAAGAGAAAGAGGGAAA 57.675 39.130 0.00 0.00 0.00 3.13
2235 2695 5.072741 CAAACCATGAAGAGAAAGAGGGAA 58.927 41.667 0.00 0.00 0.00 3.97
2236 2696 4.507335 CCAAACCATGAAGAGAAAGAGGGA 60.507 45.833 0.00 0.00 0.00 4.20
2237 2697 3.760684 CCAAACCATGAAGAGAAAGAGGG 59.239 47.826 0.00 0.00 0.00 4.30
2238 2698 3.192212 GCCAAACCATGAAGAGAAAGAGG 59.808 47.826 0.00 0.00 0.00 3.69
2239 2699 3.120060 CGCCAAACCATGAAGAGAAAGAG 60.120 47.826 0.00 0.00 0.00 2.85
2240 2700 2.813754 CGCCAAACCATGAAGAGAAAGA 59.186 45.455 0.00 0.00 0.00 2.52
2241 2701 2.554032 ACGCCAAACCATGAAGAGAAAG 59.446 45.455 0.00 0.00 0.00 2.62
2242 2702 2.582052 ACGCCAAACCATGAAGAGAAA 58.418 42.857 0.00 0.00 0.00 2.52
2243 2703 2.270352 ACGCCAAACCATGAAGAGAA 57.730 45.000 0.00 0.00 0.00 2.87
2244 2704 2.301870 AGTACGCCAAACCATGAAGAGA 59.698 45.455 0.00 0.00 0.00 3.10
2245 2705 2.699954 AGTACGCCAAACCATGAAGAG 58.300 47.619 0.00 0.00 0.00 2.85
2246 2706 2.811431 CAAGTACGCCAAACCATGAAGA 59.189 45.455 0.00 0.00 0.00 2.87
2247 2707 2.552315 ACAAGTACGCCAAACCATGAAG 59.448 45.455 0.00 0.00 0.00 3.02
2248 2708 2.292016 CACAAGTACGCCAAACCATGAA 59.708 45.455 0.00 0.00 0.00 2.57
2249 2709 1.876799 CACAAGTACGCCAAACCATGA 59.123 47.619 0.00 0.00 0.00 3.07
2250 2710 1.876799 TCACAAGTACGCCAAACCATG 59.123 47.619 0.00 0.00 0.00 3.66
2251 2711 2.264005 TCACAAGTACGCCAAACCAT 57.736 45.000 0.00 0.00 0.00 3.55
2252 2712 2.039818 TTCACAAGTACGCCAAACCA 57.960 45.000 0.00 0.00 0.00 3.67
2253 2713 3.423996 TTTTCACAAGTACGCCAAACC 57.576 42.857 0.00 0.00 0.00 3.27
2254 2714 3.978855 GGATTTTCACAAGTACGCCAAAC 59.021 43.478 0.00 0.00 0.00 2.93
2255 2715 3.632604 TGGATTTTCACAAGTACGCCAAA 59.367 39.130 0.00 0.00 0.00 3.28
2256 2716 3.215151 TGGATTTTCACAAGTACGCCAA 58.785 40.909 0.00 0.00 0.00 4.52
2257 2717 2.852449 TGGATTTTCACAAGTACGCCA 58.148 42.857 0.00 0.00 0.00 5.69
2258 2718 4.393680 TGTATGGATTTTCACAAGTACGCC 59.606 41.667 0.00 0.00 0.00 5.68
2259 2719 5.539582 TGTATGGATTTTCACAAGTACGC 57.460 39.130 0.00 0.00 0.00 4.42
2260 2720 7.858382 TGTTTTGTATGGATTTTCACAAGTACG 59.142 33.333 0.00 0.00 32.86 3.67
2261 2721 9.180678 CTGTTTTGTATGGATTTTCACAAGTAC 57.819 33.333 0.00 0.00 32.86 2.73
2262 2722 8.356657 CCTGTTTTGTATGGATTTTCACAAGTA 58.643 33.333 0.00 0.00 32.86 2.24
2263 2723 7.209475 CCTGTTTTGTATGGATTTTCACAAGT 58.791 34.615 0.00 0.00 32.86 3.16
2264 2724 6.646240 CCCTGTTTTGTATGGATTTTCACAAG 59.354 38.462 0.00 0.00 32.86 3.16
2265 2725 6.520272 CCCTGTTTTGTATGGATTTTCACAA 58.480 36.000 0.00 0.00 0.00 3.33
2266 2726 5.510520 GCCCTGTTTTGTATGGATTTTCACA 60.511 40.000 0.00 0.00 0.00 3.58
2267 2727 4.929211 GCCCTGTTTTGTATGGATTTTCAC 59.071 41.667 0.00 0.00 0.00 3.18
2268 2728 4.321601 CGCCCTGTTTTGTATGGATTTTCA 60.322 41.667 0.00 0.00 0.00 2.69
2269 2729 4.082463 TCGCCCTGTTTTGTATGGATTTTC 60.082 41.667 0.00 0.00 0.00 2.29
2270 2730 3.829601 TCGCCCTGTTTTGTATGGATTTT 59.170 39.130 0.00 0.00 0.00 1.82
2271 2731 3.426615 TCGCCCTGTTTTGTATGGATTT 58.573 40.909 0.00 0.00 0.00 2.17
2272 2732 3.016736 CTCGCCCTGTTTTGTATGGATT 58.983 45.455 0.00 0.00 0.00 3.01
2273 2733 2.643551 CTCGCCCTGTTTTGTATGGAT 58.356 47.619 0.00 0.00 0.00 3.41
2274 2734 1.948611 GCTCGCCCTGTTTTGTATGGA 60.949 52.381 0.00 0.00 0.00 3.41
2275 2735 0.451783 GCTCGCCCTGTTTTGTATGG 59.548 55.000 0.00 0.00 0.00 2.74
2276 2736 1.164411 TGCTCGCCCTGTTTTGTATG 58.836 50.000 0.00 0.00 0.00 2.39
2277 2737 1.812571 CTTGCTCGCCCTGTTTTGTAT 59.187 47.619 0.00 0.00 0.00 2.29
2278 2738 1.234821 CTTGCTCGCCCTGTTTTGTA 58.765 50.000 0.00 0.00 0.00 2.41
2279 2739 1.455383 CCTTGCTCGCCCTGTTTTGT 61.455 55.000 0.00 0.00 0.00 2.83
2280 2740 1.286880 CCTTGCTCGCCCTGTTTTG 59.713 57.895 0.00 0.00 0.00 2.44
2281 2741 2.564721 GCCTTGCTCGCCCTGTTTT 61.565 57.895 0.00 0.00 0.00 2.43
2282 2742 2.985847 GCCTTGCTCGCCCTGTTT 60.986 61.111 0.00 0.00 0.00 2.83
2283 2743 3.790416 TTGCCTTGCTCGCCCTGTT 62.790 57.895 0.00 0.00 0.00 3.16
2284 2744 3.574074 ATTGCCTTGCTCGCCCTGT 62.574 57.895 0.00 0.00 0.00 4.00
2285 2745 2.753043 ATTGCCTTGCTCGCCCTG 60.753 61.111 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.