Multiple sequence alignment - TraesCS1D01G086100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G086100 chr1D 100.000 2408 0 0 1 2408 70458799 70461206 0.000000e+00 4447.0
1 TraesCS1D01G086100 chr1D 95.385 130 6 0 1417 1546 357457114 357457243 8.720000e-50 207.0
2 TraesCS1D01G086100 chr5B 89.045 712 74 4 710 1417 246152029 246151318 0.000000e+00 880.0
3 TraesCS1D01G086100 chr6B 85.852 827 76 19 618 1417 21063243 21062431 0.000000e+00 841.0
4 TraesCS1D01G086100 chr7D 89.640 666 59 6 1749 2408 518267306 518267967 0.000000e+00 839.0
5 TraesCS1D01G086100 chr7D 86.233 661 76 11 1752 2408 623219260 623218611 0.000000e+00 702.0
6 TraesCS1D01G086100 chr7D 94.258 209 11 1 1210 1417 588835275 588835483 3.860000e-83 318.0
7 TraesCS1D01G086100 chr1B 91.958 572 30 9 8 566 111920929 111921497 0.000000e+00 787.0
8 TraesCS1D01G086100 chr1B 84.226 672 85 13 1750 2408 73374915 73375578 3.380000e-178 634.0
9 TraesCS1D01G086100 chr1B 95.673 208 6 3 1547 1754 111921606 111921810 4.960000e-87 331.0
10 TraesCS1D01G086100 chr1B 95.349 43 2 0 557 599 111921571 111921613 4.300000e-08 69.4
11 TraesCS1D01G086100 chr1A 91.364 579 32 5 24 599 70914838 70915401 0.000000e+00 776.0
12 TraesCS1D01G086100 chr1A 91.000 200 17 1 1547 1745 70915394 70915593 3.950000e-68 268.0
13 TraesCS1D01G086100 chr3B 87.879 660 68 9 1750 2408 150625344 150624696 0.000000e+00 765.0
14 TraesCS1D01G086100 chr4A 87.500 664 75 6 1750 2408 528560398 528559738 0.000000e+00 760.0
15 TraesCS1D01G086100 chr4A 86.807 667 77 9 1750 2408 599595751 599595088 0.000000e+00 734.0
16 TraesCS1D01G086100 chr6D 86.398 669 72 13 1749 2408 6576374 6577032 0.000000e+00 713.0
17 TraesCS1D01G086100 chr6D 91.129 124 10 1 1422 1545 331238302 331238424 1.480000e-37 167.0
18 TraesCS1D01G086100 chr6D 98.667 75 1 0 1474 1548 24025534 24025608 1.500000e-27 134.0
19 TraesCS1D01G086100 chr4B 85.843 664 82 12 1750 2408 97785147 97784491 0.000000e+00 695.0
20 TraesCS1D01G086100 chr4B 84.361 665 92 9 1750 2408 97873577 97872919 2.020000e-180 641.0
21 TraesCS1D01G086100 chr5D 92.000 500 16 3 942 1417 457641878 457641379 0.000000e+00 680.0
22 TraesCS1D01G086100 chr5D 100.000 29 0 0 603 631 527503833 527503861 1.000000e-03 54.7
23 TraesCS1D01G086100 chr3A 76.909 537 89 19 618 1133 62264789 62265311 3.050000e-69 272.0
24 TraesCS1D01G086100 chr3A 91.667 132 11 0 1417 1548 637916148 637916279 1.470000e-42 183.0
25 TraesCS1D01G086100 chr7A 94.355 124 7 0 1417 1540 82125279 82125402 8.790000e-45 191.0
26 TraesCS1D01G086100 chr7A 85.156 128 17 2 1420 1547 409813344 409813469 1.940000e-26 130.0
27 TraesCS1D01G086100 chr7A 100.000 30 0 0 602 631 682078022 682078051 3.340000e-04 56.5
28 TraesCS1D01G086100 chr4D 93.023 129 9 0 1422 1550 53230450 53230322 3.160000e-44 189.0
29 TraesCS1D01G086100 chr3D 92.424 132 9 1 1422 1553 572125239 572125109 1.140000e-43 187.0
30 TraesCS1D01G086100 chr6A 90.909 132 11 1 1420 1550 588556349 588556218 2.460000e-40 176.0
31 TraesCS1D01G086100 chr2D 76.596 141 28 4 1113 1251 391103235 391103372 3.320000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G086100 chr1D 70458799 70461206 2407 False 4447.0 4447 100.000000 1 2408 1 chr1D.!!$F1 2407
1 TraesCS1D01G086100 chr5B 246151318 246152029 711 True 880.0 880 89.045000 710 1417 1 chr5B.!!$R1 707
2 TraesCS1D01G086100 chr6B 21062431 21063243 812 True 841.0 841 85.852000 618 1417 1 chr6B.!!$R1 799
3 TraesCS1D01G086100 chr7D 518267306 518267967 661 False 839.0 839 89.640000 1749 2408 1 chr7D.!!$F1 659
4 TraesCS1D01G086100 chr7D 623218611 623219260 649 True 702.0 702 86.233000 1752 2408 1 chr7D.!!$R1 656
5 TraesCS1D01G086100 chr1B 73374915 73375578 663 False 634.0 634 84.226000 1750 2408 1 chr1B.!!$F1 658
6 TraesCS1D01G086100 chr1B 111920929 111921810 881 False 395.8 787 94.326667 8 1754 3 chr1B.!!$F2 1746
7 TraesCS1D01G086100 chr1A 70914838 70915593 755 False 522.0 776 91.182000 24 1745 2 chr1A.!!$F1 1721
8 TraesCS1D01G086100 chr3B 150624696 150625344 648 True 765.0 765 87.879000 1750 2408 1 chr3B.!!$R1 658
9 TraesCS1D01G086100 chr4A 528559738 528560398 660 True 760.0 760 87.500000 1750 2408 1 chr4A.!!$R1 658
10 TraesCS1D01G086100 chr4A 599595088 599595751 663 True 734.0 734 86.807000 1750 2408 1 chr4A.!!$R2 658
11 TraesCS1D01G086100 chr6D 6576374 6577032 658 False 713.0 713 86.398000 1749 2408 1 chr6D.!!$F1 659
12 TraesCS1D01G086100 chr4B 97784491 97785147 656 True 695.0 695 85.843000 1750 2408 1 chr4B.!!$R1 658
13 TraesCS1D01G086100 chr4B 97872919 97873577 658 True 641.0 641 84.361000 1750 2408 1 chr4B.!!$R2 658
14 TraesCS1D01G086100 chr3A 62264789 62265311 522 False 272.0 272 76.909000 618 1133 1 chr3A.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 221 0.386113 AATCGGACGAAGCCTCTAGC 59.614 55.0 0.0 0.0 44.25 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1566 0.17899 ACACTTCCCCCTCACAAAGC 60.179 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 4.752604 TGATACGTTGTGTGTTGTTGCTAT 59.247 37.500 0.00 0.00 0.00 2.97
124 126 1.133407 CGACTCCAGTGGAAGCTACTC 59.867 57.143 14.17 0.60 0.00 2.59
219 221 0.386113 AATCGGACGAAGCCTCTAGC 59.614 55.000 0.00 0.00 44.25 3.42
242 244 2.485814 GCATCTCCGGATATTTCCAAGC 59.514 50.000 3.57 0.00 42.74 4.01
245 247 4.229304 TCTCCGGATATTTCCAAGCAAA 57.771 40.909 3.57 0.00 42.74 3.68
246 248 4.594970 TCTCCGGATATTTCCAAGCAAAA 58.405 39.130 3.57 0.00 42.74 2.44
312 314 2.496817 GCTGAGGAGCGACCGAAT 59.503 61.111 0.00 0.00 44.74 3.34
388 391 1.328439 GTGACGCTGTGACTTCTACG 58.672 55.000 0.00 0.00 0.00 3.51
585 679 7.879070 CAACTGCTGCATTAGGTATTCATAAT 58.121 34.615 1.31 0.00 31.88 1.28
599 693 8.280497 AGGTATTCATAATCGCGAATTTACAAC 58.720 33.333 15.24 5.86 33.90 3.32
600 694 7.532884 GGTATTCATAATCGCGAATTTACAACC 59.467 37.037 15.24 11.53 33.90 3.77
601 695 5.073192 TCATAATCGCGAATTTACAACCG 57.927 39.130 15.24 0.00 0.00 4.44
602 696 4.804665 TCATAATCGCGAATTTACAACCGA 59.195 37.500 15.24 0.00 0.00 4.69
603 697 5.291371 TCATAATCGCGAATTTACAACCGAA 59.709 36.000 15.24 0.00 0.00 4.30
604 698 4.407496 AATCGCGAATTTACAACCGAAA 57.593 36.364 15.24 0.00 0.00 3.46
605 699 3.874400 TCGCGAATTTACAACCGAAAA 57.126 38.095 6.20 0.00 0.00 2.29
606 700 3.543670 TCGCGAATTTACAACCGAAAAC 58.456 40.909 6.20 0.00 0.00 2.43
607 701 3.248125 TCGCGAATTTACAACCGAAAACT 59.752 39.130 6.20 0.00 0.00 2.66
608 702 3.596562 CGCGAATTTACAACCGAAAACTC 59.403 43.478 0.00 0.00 0.00 3.01
609 703 4.609783 CGCGAATTTACAACCGAAAACTCT 60.610 41.667 0.00 0.00 0.00 3.24
610 704 5.209977 GCGAATTTACAACCGAAAACTCTT 58.790 37.500 0.00 0.00 0.00 2.85
611 705 5.338822 GCGAATTTACAACCGAAAACTCTTC 59.661 40.000 0.00 0.00 0.00 2.87
612 706 5.849604 CGAATTTACAACCGAAAACTCTTCC 59.150 40.000 0.00 0.00 0.00 3.46
613 707 6.293244 CGAATTTACAACCGAAAACTCTTCCT 60.293 38.462 0.00 0.00 0.00 3.36
614 708 5.744666 TTTACAACCGAAAACTCTTCCTG 57.255 39.130 0.00 0.00 0.00 3.86
615 709 3.277142 ACAACCGAAAACTCTTCCTGT 57.723 42.857 0.00 0.00 0.00 4.00
616 710 4.411256 ACAACCGAAAACTCTTCCTGTA 57.589 40.909 0.00 0.00 0.00 2.74
637 731 2.550830 ACCGACTGATTTCACAGCTT 57.449 45.000 0.00 0.00 41.06 3.74
649 743 2.294074 TCACAGCTTGTTAAACCGCTT 58.706 42.857 0.00 0.00 0.00 4.68
672 766 3.490759 GCTCGCCACGTGTCCATG 61.491 66.667 15.65 0.00 0.00 3.66
675 769 3.118454 CGCCACGTGTCCATGGAC 61.118 66.667 33.97 33.97 44.77 4.02
688 783 2.224159 ATGGACCCACTCACCGCTT 61.224 57.895 0.00 0.00 0.00 4.68
689 784 1.779061 ATGGACCCACTCACCGCTTT 61.779 55.000 0.00 0.00 0.00 3.51
690 785 1.671379 GGACCCACTCACCGCTTTC 60.671 63.158 0.00 0.00 0.00 2.62
691 786 1.671379 GACCCACTCACCGCTTTCC 60.671 63.158 0.00 0.00 0.00 3.13
692 787 2.359975 CCCACTCACCGCTTTCCC 60.360 66.667 0.00 0.00 0.00 3.97
693 788 2.750350 CCACTCACCGCTTTCCCT 59.250 61.111 0.00 0.00 0.00 4.20
705 800 0.469892 CTTTCCCTGGCAAACCACCT 60.470 55.000 0.00 0.00 42.67 4.00
737 833 0.819259 AGTGACACATGCAAACCGCT 60.819 50.000 8.59 0.00 43.06 5.52
745 841 1.098050 ATGCAAACCGCTCAATCCTC 58.902 50.000 0.00 0.00 43.06 3.71
766 862 5.309020 CCTCATCTCTTTCTTCATATCCCCA 59.691 44.000 0.00 0.00 0.00 4.96
854 966 2.952293 GCTGCTGCTCTGAGACCCA 61.952 63.158 9.28 0.42 36.03 4.51
1023 1136 3.749064 GCAGAGAGTGGCCGACGA 61.749 66.667 0.00 0.00 0.00 4.20
1037 1150 4.626081 ACGAGGGCGCTGCAACTT 62.626 61.111 8.56 0.00 42.48 2.66
1140 1255 1.524621 CAATGAAGCCTCGCCGGAT 60.525 57.895 5.05 0.00 33.16 4.18
1209 1324 1.591863 GACCGCCGGAAGCATAGTC 60.592 63.158 11.71 0.00 44.04 2.59
1211 1326 2.658593 CGCCGGAAGCATAGTCGG 60.659 66.667 5.05 0.00 44.04 4.79
1212 1327 2.499685 GCCGGAAGCATAGTCGGT 59.500 61.111 5.05 0.00 43.87 4.69
1225 1340 1.154150 GTCGGTGCTGCAATGAAGC 60.154 57.895 6.20 6.20 41.22 3.86
1230 1345 2.101770 GCTGCAATGAAGCCTCGC 59.898 61.111 0.59 0.00 34.45 5.03
1256 1372 0.037590 TGTAATGGAGCTTTGCCGGT 59.962 50.000 1.90 0.00 0.00 5.28
1258 1374 0.742990 TAATGGAGCTTTGCCGGTCG 60.743 55.000 1.90 0.00 32.39 4.79
1311 1449 2.980233 GGTGCTGCGTTGGAGCTT 60.980 61.111 11.54 0.00 37.35 3.74
1319 1457 1.667830 CGTTGGAGCTTCGCTGGAA 60.668 57.895 0.00 0.00 39.88 3.53
1323 1461 0.615331 TGGAGCTTCGCTGGAATTCT 59.385 50.000 5.23 0.00 39.88 2.40
1420 1559 2.689766 CGTAGCGTTGAAGCGAGC 59.310 61.111 0.00 0.00 43.00 5.03
1421 1560 2.789203 CGTAGCGTTGAAGCGAGCC 61.789 63.158 0.00 0.00 43.00 4.70
1422 1561 2.506217 TAGCGTTGAAGCGAGCCG 60.506 61.111 0.00 0.00 43.00 5.52
1423 1562 2.985117 TAGCGTTGAAGCGAGCCGA 61.985 57.895 0.00 0.00 43.00 5.54
1424 1563 4.135493 GCGTTGAAGCGAGCCGAC 62.135 66.667 0.00 0.00 0.00 4.79
1425 1564 3.827784 CGTTGAAGCGAGCCGACG 61.828 66.667 0.00 0.00 34.41 5.12
1426 1565 3.479269 GTTGAAGCGAGCCGACGG 61.479 66.667 10.29 10.29 0.00 4.79
1427 1566 4.735132 TTGAAGCGAGCCGACGGG 62.735 66.667 17.22 0.00 0.00 5.28
1437 1576 2.742372 CCGACGGGCTTTGTGAGG 60.742 66.667 5.81 0.00 0.00 3.86
1438 1577 2.742372 CGACGGGCTTTGTGAGGG 60.742 66.667 0.00 0.00 0.00 4.30
1439 1578 2.359975 GACGGGCTTTGTGAGGGG 60.360 66.667 0.00 0.00 0.00 4.79
1440 1579 3.920093 GACGGGCTTTGTGAGGGGG 62.920 68.421 0.00 0.00 0.00 5.40
1441 1580 3.646715 CGGGCTTTGTGAGGGGGA 61.647 66.667 0.00 0.00 0.00 4.81
1442 1581 2.851045 GGGCTTTGTGAGGGGGAA 59.149 61.111 0.00 0.00 0.00 3.97
1443 1582 1.304464 GGGCTTTGTGAGGGGGAAG 60.304 63.158 0.00 0.00 0.00 3.46
1444 1583 1.460699 GGCTTTGTGAGGGGGAAGT 59.539 57.895 0.00 0.00 0.00 3.01
1445 1584 0.895559 GGCTTTGTGAGGGGGAAGTG 60.896 60.000 0.00 0.00 0.00 3.16
1446 1585 0.178990 GCTTTGTGAGGGGGAAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
1447 1586 1.609208 CTTTGTGAGGGGGAAGTGTG 58.391 55.000 0.00 0.00 0.00 3.82
1448 1587 0.467290 TTTGTGAGGGGGAAGTGTGC 60.467 55.000 0.00 0.00 0.00 4.57
1449 1588 1.640593 TTGTGAGGGGGAAGTGTGCA 61.641 55.000 0.00 0.00 0.00 4.57
1450 1589 1.600916 GTGAGGGGGAAGTGTGCAC 60.601 63.158 10.75 10.75 0.00 4.57
1451 1590 2.358737 GAGGGGGAAGTGTGCACG 60.359 66.667 13.13 0.00 36.20 5.34
1452 1591 3.168528 AGGGGGAAGTGTGCACGT 61.169 61.111 13.13 0.00 36.20 4.49
1453 1592 2.978010 GGGGGAAGTGTGCACGTG 60.978 66.667 12.28 12.28 36.20 4.49
1454 1593 3.660111 GGGGAAGTGTGCACGTGC 61.660 66.667 33.11 33.11 42.50 5.34
1468 1607 2.579787 GTGCAGATCGGACGGACG 60.580 66.667 0.00 0.00 0.00 4.79
1469 1608 4.492160 TGCAGATCGGACGGACGC 62.492 66.667 0.00 0.00 0.00 5.19
1471 1610 4.907034 CAGATCGGACGGACGCGG 62.907 72.222 12.47 0.00 0.00 6.46
1478 1617 2.431260 GACGGACGCGGTGCTTTA 60.431 61.111 12.47 0.00 0.00 1.85
1479 1618 2.723719 GACGGACGCGGTGCTTTAC 61.724 63.158 12.47 0.00 0.00 2.01
1480 1619 2.735478 CGGACGCGGTGCTTTACA 60.735 61.111 12.47 0.00 0.00 2.41
1481 1620 2.098233 CGGACGCGGTGCTTTACAT 61.098 57.895 12.47 0.00 0.00 2.29
1482 1621 1.713830 GGACGCGGTGCTTTACATC 59.286 57.895 12.47 0.00 0.00 3.06
1488 1627 2.380081 GGTGCTTTACATCGGACGG 58.620 57.895 0.00 0.00 0.00 4.79
1489 1628 1.702491 GGTGCTTTACATCGGACGGC 61.702 60.000 0.00 0.00 0.00 5.68
1490 1629 1.448893 TGCTTTACATCGGACGGCC 60.449 57.895 0.00 0.00 0.00 6.13
1517 1656 1.396644 CGACTTACGAATCGCCTAGC 58.603 55.000 1.15 0.00 45.77 3.42
1518 1657 1.268386 CGACTTACGAATCGCCTAGCA 60.268 52.381 1.15 0.00 45.77 3.49
1519 1658 2.604855 CGACTTACGAATCGCCTAGCAT 60.605 50.000 1.15 0.00 45.77 3.79
1520 1659 2.981140 GACTTACGAATCGCCTAGCATC 59.019 50.000 1.15 0.00 0.00 3.91
1521 1660 1.979469 CTTACGAATCGCCTAGCATCG 59.021 52.381 1.15 5.29 35.80 3.84
1522 1661 0.386858 TACGAATCGCCTAGCATCGC 60.387 55.000 1.15 0.00 34.03 4.58
1523 1662 2.375766 CGAATCGCCTAGCATCGCC 61.376 63.158 0.00 0.00 0.00 5.54
1524 1663 2.029844 GAATCGCCTAGCATCGCCC 61.030 63.158 0.00 0.00 0.00 6.13
1525 1664 3.865929 AATCGCCTAGCATCGCCCG 62.866 63.158 0.00 0.00 0.00 6.13
1528 1667 4.971125 GCCTAGCATCGCCCGACC 62.971 72.222 0.00 0.00 0.00 4.79
1529 1668 3.227276 CCTAGCATCGCCCGACCT 61.227 66.667 0.00 0.00 0.00 3.85
1530 1669 1.901948 CCTAGCATCGCCCGACCTA 60.902 63.158 0.00 0.00 0.00 3.08
1531 1670 1.286260 CTAGCATCGCCCGACCTAC 59.714 63.158 0.00 0.00 0.00 3.18
1532 1671 2.459421 CTAGCATCGCCCGACCTACG 62.459 65.000 0.00 0.00 42.18 3.51
1534 1673 4.944372 CATCGCCCGACCTACGCC 62.944 72.222 0.00 0.00 41.07 5.68
1536 1675 3.779850 ATCGCCCGACCTACGCCTA 62.780 63.158 0.00 0.00 41.07 3.93
1537 1676 3.962421 CGCCCGACCTACGCCTAG 61.962 72.222 0.00 0.00 41.07 3.02
1538 1677 4.281947 GCCCGACCTACGCCTAGC 62.282 72.222 0.00 0.00 41.07 3.42
1539 1678 2.831742 CCCGACCTACGCCTAGCA 60.832 66.667 0.00 0.00 41.07 3.49
1540 1679 2.201022 CCCGACCTACGCCTAGCAT 61.201 63.158 0.00 0.00 41.07 3.79
1541 1680 1.286260 CCGACCTACGCCTAGCATC 59.714 63.158 0.00 0.00 41.07 3.91
1542 1681 1.082038 CGACCTACGCCTAGCATCG 60.082 63.158 0.00 2.09 34.51 3.84
1543 1682 1.371881 GACCTACGCCTAGCATCGC 60.372 63.158 0.00 0.00 0.00 4.58
1544 1683 2.049063 CCTACGCCTAGCATCGCC 60.049 66.667 0.00 0.00 0.00 5.54
1545 1684 2.049063 CTACGCCTAGCATCGCCC 60.049 66.667 0.00 0.00 0.00 6.13
1546 1685 2.835895 TACGCCTAGCATCGCCCA 60.836 61.111 0.00 0.00 0.00 5.36
1547 1686 2.159819 CTACGCCTAGCATCGCCCAT 62.160 60.000 0.00 0.00 0.00 4.00
1548 1687 1.754380 TACGCCTAGCATCGCCCATT 61.754 55.000 0.00 0.00 0.00 3.16
1549 1688 1.893808 CGCCTAGCATCGCCCATTT 60.894 57.895 0.00 0.00 0.00 2.32
1550 1689 0.602638 CGCCTAGCATCGCCCATTTA 60.603 55.000 0.00 0.00 0.00 1.40
1551 1690 0.875059 GCCTAGCATCGCCCATTTAC 59.125 55.000 0.00 0.00 0.00 2.01
1552 1691 1.813862 GCCTAGCATCGCCCATTTACA 60.814 52.381 0.00 0.00 0.00 2.41
1553 1692 2.571212 CCTAGCATCGCCCATTTACAA 58.429 47.619 0.00 0.00 0.00 2.41
1554 1693 2.290641 CCTAGCATCGCCCATTTACAAC 59.709 50.000 0.00 0.00 0.00 3.32
1635 1774 7.636326 ACTTTTGTACACTTCCAGAAAATACG 58.364 34.615 0.00 0.00 0.00 3.06
1681 1820 8.324163 AGTTGGCGGAGAACATTATTATATTC 57.676 34.615 0.00 0.00 0.00 1.75
1826 1969 1.348696 ACTTACGAACCGGGACCAAAT 59.651 47.619 6.32 0.00 0.00 2.32
1842 1985 2.497792 AAATGGTGCATCAGCCCCGA 62.498 55.000 5.59 0.00 41.74 5.14
1851 1994 1.043116 ATCAGCCCCGATTCGTGAGA 61.043 55.000 5.20 0.00 39.20 3.27
1926 2071 3.307906 TCCCGGTTCCAGACACGG 61.308 66.667 0.00 0.00 39.97 4.94
1943 2088 1.001503 GGATTGGGACCAATGGGCA 59.998 57.895 20.53 0.00 45.50 5.36
1946 2091 0.398948 ATTGGGACCAATGGGCATCC 60.399 55.000 15.41 2.75 44.05 3.51
2001 2146 1.602605 GGAACCGGGACCAAAGGTG 60.603 63.158 6.32 0.00 38.44 4.00
2008 2153 1.621814 CGGGACCAAAGGTGAGTCTTA 59.378 52.381 0.00 0.00 35.25 2.10
2066 2215 1.414099 GCCTATATATACCCCCGCCCT 60.414 57.143 0.00 0.00 0.00 5.19
2079 2232 4.096003 GCCCTTGCCCGCTCACTA 62.096 66.667 0.00 0.00 0.00 2.74
2090 2243 2.737252 CCCGCTCACTACTCTGTTTTTC 59.263 50.000 0.00 0.00 0.00 2.29
2141 2298 6.264292 TGTTGCTCTAGTTCTCATCTCCTATC 59.736 42.308 0.00 0.00 0.00 2.08
2166 2323 3.057969 TGAGGTGTTCGATGAAATGCT 57.942 42.857 0.00 0.00 0.00 3.79
2170 2327 3.189287 AGGTGTTCGATGAAATGCTTGAC 59.811 43.478 0.00 0.00 0.00 3.18
2220 2377 5.047519 AGCTCCATTTTCCTCAAGATTTGTG 60.048 40.000 0.00 0.00 0.00 3.33
2226 2383 7.393234 CCATTTTCCTCAAGATTTGTGTAGGTA 59.607 37.037 0.00 0.00 0.00 3.08
2235 2392 4.894114 AGATTTGTGTAGGTATAGCGGTCT 59.106 41.667 0.00 0.00 0.00 3.85
2244 2401 3.074094 AGGTATAGCGGTCTGTCCTATCA 59.926 47.826 0.00 0.00 0.00 2.15
2319 2476 0.601046 CGTGCTGAGCCTCTTGTTCA 60.601 55.000 0.23 0.00 0.00 3.18
2333 2490 8.203485 AGCCTCTTGTTCATATCTTCTTTCTAG 58.797 37.037 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.372659 ACATGAAAGTACTGTAGGCAATTCAG 59.627 38.462 0.00 0.00 35.60 3.02
1 2 6.237901 ACATGAAAGTACTGTAGGCAATTCA 58.762 36.000 0.00 0.08 0.00 2.57
2 3 6.743575 ACATGAAAGTACTGTAGGCAATTC 57.256 37.500 0.00 0.00 0.00 2.17
3 4 6.942576 AGAACATGAAAGTACTGTAGGCAATT 59.057 34.615 0.00 0.00 0.00 2.32
5 6 5.865085 AGAACATGAAAGTACTGTAGGCAA 58.135 37.500 0.00 0.00 0.00 4.52
6 7 5.483685 AGAACATGAAAGTACTGTAGGCA 57.516 39.130 0.00 0.00 0.00 4.75
8 9 7.155328 ACAGAAGAACATGAAAGTACTGTAGG 58.845 38.462 0.00 0.00 34.95 3.18
9 10 8.594881 AACAGAAGAACATGAAAGTACTGTAG 57.405 34.615 0.00 0.00 35.51 2.74
10 11 8.958119 AAACAGAAGAACATGAAAGTACTGTA 57.042 30.769 0.00 0.00 35.51 2.74
11 12 7.865706 AAACAGAAGAACATGAAAGTACTGT 57.134 32.000 0.00 5.16 37.62 3.55
12 13 9.046296 ACTAAACAGAAGAACATGAAAGTACTG 57.954 33.333 0.00 4.54 0.00 2.74
13 14 9.046296 CACTAAACAGAAGAACATGAAAGTACT 57.954 33.333 0.00 0.00 0.00 2.73
14 15 9.042008 TCACTAAACAGAAGAACATGAAAGTAC 57.958 33.333 0.00 0.00 0.00 2.73
19 20 7.714813 TCACATCACTAAACAGAAGAACATGAA 59.285 33.333 0.00 0.00 0.00 2.57
88 90 2.423892 GAGTCGTCTGTGGATGCTCTAA 59.576 50.000 0.00 0.00 33.29 2.10
89 91 2.017782 GAGTCGTCTGTGGATGCTCTA 58.982 52.381 0.00 0.00 33.29 2.43
124 126 2.225019 CGCCTGCTAGCTTTATCCAATG 59.775 50.000 17.23 0.00 0.00 2.82
249 251 5.008712 GTCATTCTTCCGTGTTCTCCTTTTT 59.991 40.000 0.00 0.00 0.00 1.94
250 252 4.515567 GTCATTCTTCCGTGTTCTCCTTTT 59.484 41.667 0.00 0.00 0.00 2.27
262 264 2.918712 ATAGCAGGGTCATTCTTCCG 57.081 50.000 0.00 0.00 0.00 4.30
265 267 5.957771 TTGACTATAGCAGGGTCATTCTT 57.042 39.130 0.00 0.00 39.30 2.52
351 353 2.300152 TCACATGGACTCTCTCAACCAC 59.700 50.000 0.00 0.00 35.19 4.16
388 391 9.169468 CACTTGGCAATAATATAATGAACGAAC 57.831 33.333 0.00 0.00 0.00 3.95
428 438 1.202200 CGCGACTACTTTCAGAGAGGG 60.202 57.143 0.00 0.00 0.00 4.30
585 679 3.248125 AGTTTTCGGTTGTAAATTCGCGA 59.752 39.130 3.71 3.71 0.00 5.87
599 693 3.185797 CGGTTTACAGGAAGAGTTTTCGG 59.814 47.826 0.00 0.00 0.00 4.30
600 694 4.053295 TCGGTTTACAGGAAGAGTTTTCG 58.947 43.478 0.00 0.00 0.00 3.46
601 695 5.050295 CAGTCGGTTTACAGGAAGAGTTTTC 60.050 44.000 0.00 0.00 0.00 2.29
602 696 4.814771 CAGTCGGTTTACAGGAAGAGTTTT 59.185 41.667 0.00 0.00 0.00 2.43
603 697 4.100498 TCAGTCGGTTTACAGGAAGAGTTT 59.900 41.667 0.00 0.00 0.00 2.66
604 698 3.640029 TCAGTCGGTTTACAGGAAGAGTT 59.360 43.478 0.00 0.00 0.00 3.01
605 699 3.228453 TCAGTCGGTTTACAGGAAGAGT 58.772 45.455 0.00 0.00 0.00 3.24
606 700 3.936372 TCAGTCGGTTTACAGGAAGAG 57.064 47.619 0.00 0.00 0.00 2.85
607 701 4.884668 AATCAGTCGGTTTACAGGAAGA 57.115 40.909 0.00 0.00 0.00 2.87
608 702 4.994852 TGAAATCAGTCGGTTTACAGGAAG 59.005 41.667 0.00 0.00 0.00 3.46
609 703 4.753107 GTGAAATCAGTCGGTTTACAGGAA 59.247 41.667 0.00 0.00 0.00 3.36
610 704 4.202274 TGTGAAATCAGTCGGTTTACAGGA 60.202 41.667 0.00 0.00 0.00 3.86
611 705 4.062293 TGTGAAATCAGTCGGTTTACAGG 58.938 43.478 0.00 0.00 0.00 4.00
612 706 4.377431 GCTGTGAAATCAGTCGGTTTACAG 60.377 45.833 0.00 0.00 37.70 2.74
613 707 3.496884 GCTGTGAAATCAGTCGGTTTACA 59.503 43.478 0.00 0.00 37.70 2.41
614 708 3.746492 AGCTGTGAAATCAGTCGGTTTAC 59.254 43.478 0.00 0.00 37.70 2.01
615 709 4.002906 AGCTGTGAAATCAGTCGGTTTA 57.997 40.909 0.00 0.00 37.70 2.01
616 710 2.851195 AGCTGTGAAATCAGTCGGTTT 58.149 42.857 0.00 0.00 37.70 3.27
637 731 1.407258 AGCAAAGCAAGCGGTTTAACA 59.593 42.857 0.00 0.00 40.79 2.41
649 743 3.648982 CACGTGGCGAGCAAAGCA 61.649 61.111 7.95 0.00 36.08 3.91
672 766 1.671379 GAAAGCGGTGAGTGGGTCC 60.671 63.158 0.00 0.00 0.00 4.46
675 769 2.359975 GGGAAAGCGGTGAGTGGG 60.360 66.667 0.00 0.00 0.00 4.61
693 788 2.757894 TAAGGAAAGGTGGTTTGCCA 57.242 45.000 0.00 0.00 43.73 4.92
705 800 6.070824 TGCATGTGTCACTAGAGATAAGGAAA 60.071 38.462 4.27 0.00 0.00 3.13
737 833 8.373981 GGATATGAAGAAAGAGATGAGGATTGA 58.626 37.037 0.00 0.00 0.00 2.57
745 841 5.873712 CGATGGGGATATGAAGAAAGAGATG 59.126 44.000 0.00 0.00 0.00 2.90
901 1014 3.710722 CTCCCCCTTGCAGCGACT 61.711 66.667 0.00 0.00 0.00 4.18
1008 1121 2.752238 CCTCGTCGGCCACTCTCT 60.752 66.667 2.24 0.00 0.00 3.10
1166 1281 1.526575 AAGTTCCATTGCAGCACCGG 61.527 55.000 0.00 0.00 0.00 5.28
1209 1324 2.180017 GGCTTCATTGCAGCACCG 59.820 61.111 10.43 0.00 39.21 4.94
1211 1326 1.136147 CGAGGCTTCATTGCAGCAC 59.864 57.895 10.43 3.23 39.21 4.40
1212 1327 2.693762 GCGAGGCTTCATTGCAGCA 61.694 57.895 10.43 0.00 39.21 4.41
1225 1340 1.592669 CATTACAGCTCCGGCGAGG 60.593 63.158 9.30 0.83 44.37 4.63
1230 1345 0.179000 AAGCTCCATTACAGCTCCGG 59.821 55.000 0.00 0.00 46.96 5.14
1239 1355 0.742990 CGACCGGCAAAGCTCCATTA 60.743 55.000 0.00 0.00 0.00 1.90
1271 1409 1.140161 CGTCCGGCGAAGTTCCATA 59.860 57.895 9.30 0.00 44.77 2.74
1311 1449 1.019278 GCACCGAAGAATTCCAGCGA 61.019 55.000 12.13 0.00 43.81 4.93
1315 1453 1.298157 CGCAGCACCGAAGAATTCCA 61.298 55.000 0.65 0.00 43.81 3.53
1319 1457 1.577328 CCAACGCAGCACCGAAGAAT 61.577 55.000 2.96 0.00 0.00 2.40
1323 1461 2.203084 TTCCAACGCAGCACCGAA 60.203 55.556 2.96 0.00 0.00 4.30
1357 1495 1.154093 CAGCTTTCATGGCGCACTG 60.154 57.895 10.83 5.83 34.52 3.66
1358 1496 2.986306 GCAGCTTTCATGGCGCACT 61.986 57.895 10.83 0.00 34.52 4.40
1395 1534 0.878523 TTCAACGCTACGCAGCTGTT 60.879 50.000 16.64 8.80 46.26 3.16
1396 1535 1.284982 CTTCAACGCTACGCAGCTGT 61.285 55.000 16.64 2.75 46.26 4.40
1420 1559 2.742372 CCTCACAAAGCCCGTCGG 60.742 66.667 3.60 3.60 0.00 4.79
1421 1560 2.742372 CCCTCACAAAGCCCGTCG 60.742 66.667 0.00 0.00 0.00 5.12
1422 1561 2.359975 CCCCTCACAAAGCCCGTC 60.360 66.667 0.00 0.00 0.00 4.79
1423 1562 3.966543 CCCCCTCACAAAGCCCGT 61.967 66.667 0.00 0.00 0.00 5.28
1424 1563 3.204467 TTCCCCCTCACAAAGCCCG 62.204 63.158 0.00 0.00 0.00 6.13
1425 1564 1.304464 CTTCCCCCTCACAAAGCCC 60.304 63.158 0.00 0.00 0.00 5.19
1426 1565 0.895559 CACTTCCCCCTCACAAAGCC 60.896 60.000 0.00 0.00 0.00 4.35
1427 1566 0.178990 ACACTTCCCCCTCACAAAGC 60.179 55.000 0.00 0.00 0.00 3.51
1428 1567 1.609208 CACACTTCCCCCTCACAAAG 58.391 55.000 0.00 0.00 0.00 2.77
1429 1568 0.467290 GCACACTTCCCCCTCACAAA 60.467 55.000 0.00 0.00 0.00 2.83
1430 1569 1.150536 GCACACTTCCCCCTCACAA 59.849 57.895 0.00 0.00 0.00 3.33
1431 1570 2.075566 TGCACACTTCCCCCTCACA 61.076 57.895 0.00 0.00 0.00 3.58
1432 1571 1.600916 GTGCACACTTCCCCCTCAC 60.601 63.158 13.17 0.00 0.00 3.51
1433 1572 2.836154 GTGCACACTTCCCCCTCA 59.164 61.111 13.17 0.00 0.00 3.86
1434 1573 2.358737 CGTGCACACTTCCCCCTC 60.359 66.667 18.64 0.00 0.00 4.30
1435 1574 3.168528 ACGTGCACACTTCCCCCT 61.169 61.111 18.64 0.00 0.00 4.79
1436 1575 2.978010 CACGTGCACACTTCCCCC 60.978 66.667 18.64 0.00 0.00 5.40
1437 1576 3.660111 GCACGTGCACACTTCCCC 61.660 66.667 34.52 0.76 41.59 4.81
1447 1586 3.545481 CGTCCGATCTGCACGTGC 61.545 66.667 33.11 33.11 42.50 5.34
1448 1587 2.880879 CCGTCCGATCTGCACGTG 60.881 66.667 12.28 12.28 26.46 4.49
1449 1588 3.060000 TCCGTCCGATCTGCACGT 61.060 61.111 7.06 0.00 26.46 4.49
1450 1589 2.579787 GTCCGTCCGATCTGCACG 60.580 66.667 0.00 0.00 0.00 5.34
1451 1590 2.579787 CGTCCGTCCGATCTGCAC 60.580 66.667 0.00 0.00 0.00 4.57
1452 1591 4.492160 GCGTCCGTCCGATCTGCA 62.492 66.667 0.00 0.00 0.00 4.41
1454 1593 4.907034 CCGCGTCCGTCCGATCTG 62.907 72.222 4.92 0.00 0.00 2.90
1460 1599 3.919973 TAAAGCACCGCGTCCGTCC 62.920 63.158 4.92 0.00 0.00 4.79
1461 1600 2.431260 TAAAGCACCGCGTCCGTC 60.431 61.111 4.92 0.00 0.00 4.79
1462 1601 2.735857 GTAAAGCACCGCGTCCGT 60.736 61.111 4.92 0.00 0.00 4.69
1463 1602 2.020836 GATGTAAAGCACCGCGTCCG 62.021 60.000 4.92 0.00 0.00 4.79
1464 1603 1.713830 GATGTAAAGCACCGCGTCC 59.286 57.895 4.92 0.00 0.00 4.79
1465 1604 1.343821 CGATGTAAAGCACCGCGTC 59.656 57.895 4.92 0.00 0.00 5.19
1466 1605 2.098233 CCGATGTAAAGCACCGCGT 61.098 57.895 4.92 0.00 0.00 6.01
1467 1606 1.807981 TCCGATGTAAAGCACCGCG 60.808 57.895 0.00 0.00 0.00 6.46
1468 1607 1.713830 GTCCGATGTAAAGCACCGC 59.286 57.895 0.00 0.00 0.00 5.68
1469 1608 1.418342 CCGTCCGATGTAAAGCACCG 61.418 60.000 0.00 0.00 0.00 4.94
1470 1609 1.702491 GCCGTCCGATGTAAAGCACC 61.702 60.000 0.00 0.00 0.00 5.01
1471 1610 1.702491 GGCCGTCCGATGTAAAGCAC 61.702 60.000 0.00 0.00 0.00 4.40
1472 1611 1.448893 GGCCGTCCGATGTAAAGCA 60.449 57.895 0.00 0.00 0.00 3.91
1473 1612 3.406559 GGCCGTCCGATGTAAAGC 58.593 61.111 0.00 0.00 0.00 3.51
1491 1630 0.571197 GATTCGTAAGTCGCCTTCGC 59.429 55.000 0.00 0.00 39.67 4.70
1492 1631 0.838229 CGATTCGTAAGTCGCCTTCG 59.162 55.000 0.00 0.00 39.67 3.79
1498 1637 1.268386 TGCTAGGCGATTCGTAAGTCG 60.268 52.381 8.03 0.00 40.62 4.18
1499 1638 2.486951 TGCTAGGCGATTCGTAAGTC 57.513 50.000 8.03 0.00 39.48 3.01
1500 1639 2.604855 CGATGCTAGGCGATTCGTAAGT 60.605 50.000 8.03 0.00 39.48 2.24
1501 1640 1.979469 CGATGCTAGGCGATTCGTAAG 59.021 52.381 8.03 4.29 0.00 2.34
1502 1641 1.929038 GCGATGCTAGGCGATTCGTAA 60.929 52.381 8.03 0.00 33.15 3.18
1503 1642 0.386858 GCGATGCTAGGCGATTCGTA 60.387 55.000 8.03 0.00 33.15 3.43
1504 1643 1.661821 GCGATGCTAGGCGATTCGT 60.662 57.895 8.03 0.00 33.15 3.85
1505 1644 2.375766 GGCGATGCTAGGCGATTCG 61.376 63.158 0.62 0.62 33.51 3.34
1506 1645 2.029844 GGGCGATGCTAGGCGATTC 61.030 63.158 0.00 0.00 34.74 2.52
1507 1646 2.031163 GGGCGATGCTAGGCGATT 59.969 61.111 0.00 0.00 34.74 3.34
1508 1647 4.363990 CGGGCGATGCTAGGCGAT 62.364 66.667 0.00 0.00 34.74 4.58
1511 1650 4.971125 GGTCGGGCGATGCTAGGC 62.971 72.222 0.00 0.00 0.00 3.93
1512 1651 1.901948 TAGGTCGGGCGATGCTAGG 60.902 63.158 0.00 0.00 0.00 3.02
1513 1652 1.286260 GTAGGTCGGGCGATGCTAG 59.714 63.158 0.00 0.00 0.00 3.42
1514 1653 2.549198 CGTAGGTCGGGCGATGCTA 61.549 63.158 0.00 0.00 35.71 3.49
1515 1654 3.900892 CGTAGGTCGGGCGATGCT 61.901 66.667 0.00 0.00 35.71 3.79
1517 1656 4.944372 GGCGTAGGTCGGGCGATG 62.944 72.222 0.00 0.00 40.26 3.84
1518 1657 3.779850 TAGGCGTAGGTCGGGCGAT 62.780 63.158 0.00 0.00 40.26 4.58
1519 1658 4.488136 TAGGCGTAGGTCGGGCGA 62.488 66.667 0.00 0.00 40.26 5.54
1520 1659 3.962421 CTAGGCGTAGGTCGGGCG 61.962 72.222 5.50 0.00 40.26 6.13
1521 1660 4.281947 GCTAGGCGTAGGTCGGGC 62.282 72.222 14.89 0.00 40.26 6.13
1522 1661 2.143594 GATGCTAGGCGTAGGTCGGG 62.144 65.000 14.89 0.00 40.26 5.14
1523 1662 1.286260 GATGCTAGGCGTAGGTCGG 59.714 63.158 14.89 0.00 40.26 4.79
1524 1663 1.082038 CGATGCTAGGCGTAGGTCG 60.082 63.158 14.89 0.00 43.12 4.79
1525 1664 1.371881 GCGATGCTAGGCGTAGGTC 60.372 63.158 14.89 0.32 0.00 3.85
1526 1665 2.728817 GCGATGCTAGGCGTAGGT 59.271 61.111 14.89 0.00 0.00 3.08
1527 1666 2.049063 GGCGATGCTAGGCGTAGG 60.049 66.667 14.89 0.00 0.00 3.18
1528 1667 2.049063 GGGCGATGCTAGGCGTAG 60.049 66.667 9.11 9.11 34.74 3.51
1529 1668 1.754380 AATGGGCGATGCTAGGCGTA 61.754 55.000 0.00 0.00 34.74 4.42
1530 1669 2.608970 AAATGGGCGATGCTAGGCGT 62.609 55.000 0.00 0.00 34.74 5.68
1531 1670 0.602638 TAAATGGGCGATGCTAGGCG 60.603 55.000 0.00 0.00 34.74 5.52
1532 1671 0.875059 GTAAATGGGCGATGCTAGGC 59.125 55.000 0.00 0.00 0.00 3.93
1533 1672 2.254546 TGTAAATGGGCGATGCTAGG 57.745 50.000 0.00 0.00 0.00 3.02
1534 1673 2.032894 CGTTGTAAATGGGCGATGCTAG 60.033 50.000 0.00 0.00 0.00 3.42
1535 1674 1.937223 CGTTGTAAATGGGCGATGCTA 59.063 47.619 0.00 0.00 0.00 3.49
1536 1675 0.732571 CGTTGTAAATGGGCGATGCT 59.267 50.000 0.00 0.00 0.00 3.79
1537 1676 0.865639 GCGTTGTAAATGGGCGATGC 60.866 55.000 0.00 0.00 32.13 3.91
1538 1677 0.449786 TGCGTTGTAAATGGGCGATG 59.550 50.000 0.00 0.00 32.13 3.84
1539 1678 1.388547 ATGCGTTGTAAATGGGCGAT 58.611 45.000 0.00 0.00 32.13 4.58
1540 1679 2.025589 TATGCGTTGTAAATGGGCGA 57.974 45.000 0.00 0.00 32.13 5.54
1541 1680 2.834574 TTATGCGTTGTAAATGGGCG 57.165 45.000 0.00 0.00 32.13 6.13
1542 1681 4.048504 GGAATTATGCGTTGTAAATGGGC 58.951 43.478 0.00 0.00 32.13 5.36
1543 1682 5.255710 TGGAATTATGCGTTGTAAATGGG 57.744 39.130 0.00 0.00 32.13 4.00
1544 1683 4.739716 GCTGGAATTATGCGTTGTAAATGG 59.260 41.667 0.00 0.00 32.13 3.16
1545 1684 5.339177 TGCTGGAATTATGCGTTGTAAATG 58.661 37.500 0.00 0.00 35.44 2.32
1546 1685 5.574891 TGCTGGAATTATGCGTTGTAAAT 57.425 34.783 0.00 0.00 0.00 1.40
1547 1686 5.157781 GTTGCTGGAATTATGCGTTGTAAA 58.842 37.500 0.00 0.00 0.00 2.01
1548 1687 4.216472 TGTTGCTGGAATTATGCGTTGTAA 59.784 37.500 0.00 0.00 0.00 2.41
1549 1688 3.753797 TGTTGCTGGAATTATGCGTTGTA 59.246 39.130 0.00 0.00 0.00 2.41
1550 1689 2.556189 TGTTGCTGGAATTATGCGTTGT 59.444 40.909 0.00 0.00 0.00 3.32
1551 1690 3.214697 TGTTGCTGGAATTATGCGTTG 57.785 42.857 0.00 0.00 0.00 4.10
1552 1691 4.881273 TCTATGTTGCTGGAATTATGCGTT 59.119 37.500 0.00 0.00 0.00 4.84
1553 1692 4.450976 TCTATGTTGCTGGAATTATGCGT 58.549 39.130 0.00 0.00 0.00 5.24
1554 1693 5.618056 ATCTATGTTGCTGGAATTATGCG 57.382 39.130 0.00 0.00 0.00 4.73
1681 1820 6.122850 TCTGGATTTTGCACTATTCAATCG 57.877 37.500 0.00 0.00 0.00 3.34
1765 1905 1.228675 CCTGGCCTCAACCAAAGCT 60.229 57.895 3.32 0.00 39.86 3.74
1837 1980 1.141881 CTGGTCTCACGAATCGGGG 59.858 63.158 4.63 0.00 0.00 5.73
1842 1985 2.579201 CGCCCTGGTCTCACGAAT 59.421 61.111 0.00 0.00 0.00 3.34
1926 2071 1.043022 GATGCCCATTGGTCCCAATC 58.957 55.000 8.60 0.00 43.92 2.67
1943 2088 1.768077 GTGCTAGGCCAGGAGGGAT 60.768 63.158 5.01 0.00 40.01 3.85
1946 2091 1.566298 AAAGGTGCTAGGCCAGGAGG 61.566 60.000 5.01 0.00 38.23 4.30
2001 2146 3.243468 GCTAGAACCGGGACATAAGACTC 60.243 52.174 6.32 0.00 0.00 3.36
2008 2153 1.623542 GGTGGCTAGAACCGGGACAT 61.624 60.000 6.32 0.00 0.00 3.06
2066 2215 1.185618 ACAGAGTAGTGAGCGGGCAA 61.186 55.000 0.00 0.00 0.00 4.52
2079 2232 1.172812 GCCGGCCAGAAAAACAGAGT 61.173 55.000 18.11 0.00 0.00 3.24
2166 2323 4.134563 GAGAAAGCTTAAGTGTGGGTCAA 58.865 43.478 0.00 0.00 0.00 3.18
2170 2327 3.008485 AGAGGAGAAAGCTTAAGTGTGGG 59.992 47.826 0.00 0.00 0.00 4.61
2220 2377 2.861274 AGGACAGACCGCTATACCTAC 58.139 52.381 0.00 0.00 44.74 3.18
2226 2383 1.880675 CGTGATAGGACAGACCGCTAT 59.119 52.381 0.00 0.00 44.74 2.97
2228 2385 0.680280 ACGTGATAGGACAGACCGCT 60.680 55.000 0.00 0.00 44.74 5.52
2235 2392 1.410004 GATGGGGACGTGATAGGACA 58.590 55.000 0.00 0.00 0.00 4.02
2244 2401 3.075005 CGGTGAGGATGGGGACGT 61.075 66.667 0.00 0.00 0.00 4.34
2304 2461 5.916318 AGAAGATATGAACAAGAGGCTCAG 58.084 41.667 18.26 11.28 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.