Multiple sequence alignment - TraesCS1D01G085300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G085300 chr1D 100.000 6286 0 0 1 6286 69620222 69613937 0.000000e+00 11609.0
1 TraesCS1D01G085300 chr1D 96.000 100 2 2 4518 4616 69615607 69615705 1.810000e-35 161.0
2 TraesCS1D01G085300 chr1D 96.842 95 3 0 4516 4610 50709055 50708961 6.520000e-35 159.0
3 TraesCS1D01G085300 chr1D 97.619 42 1 0 2720 2761 51865246 51865205 8.740000e-09 73.1
4 TraesCS1D01G085300 chr1D 97.619 42 1 0 2720 2761 254441835 254441876 8.740000e-09 73.1
5 TraesCS1D01G085300 chr1A 93.275 2513 59 21 2083 4526 69192272 69189801 0.000000e+00 3603.0
6 TraesCS1D01G085300 chr1A 89.385 1969 131 21 114 2039 69194197 69192264 0.000000e+00 2407.0
7 TraesCS1D01G085300 chr1A 94.255 1114 41 7 4607 5713 69189804 69188707 0.000000e+00 1681.0
8 TraesCS1D01G085300 chr1B 94.963 1608 54 5 999 2605 111265291 111263710 0.000000e+00 2495.0
9 TraesCS1D01G085300 chr1B 90.358 1618 103 28 2607 4184 111263681 111262077 0.000000e+00 2074.0
10 TraesCS1D01G085300 chr1B 87.302 567 32 15 4830 5388 111261192 111260658 4.170000e-171 612.0
11 TraesCS1D01G085300 chr1B 89.130 230 13 3 4608 4830 111261669 111261445 6.210000e-70 276.0
12 TraesCS1D01G085300 chr1B 89.189 148 13 3 4244 4390 111261952 111261807 1.390000e-41 182.0
13 TraesCS1D01G085300 chr1B 85.897 78 6 5 5566 5640 111260514 111260439 1.880000e-10 78.7
14 TraesCS1D01G085300 chr4D 87.140 591 58 9 5711 6286 319337319 319337906 0.000000e+00 654.0
15 TraesCS1D01G085300 chr4D 84.838 587 60 16 5713 6284 29872097 29871525 1.180000e-156 564.0
16 TraesCS1D01G085300 chr4D 97.619 42 1 0 2720 2761 19875291 19875332 8.740000e-09 73.1
17 TraesCS1D01G085300 chr3D 86.509 593 50 13 5710 6286 412820838 412820260 5.350000e-175 625.0
18 TraesCS1D01G085300 chr3D 86.149 592 53 15 5713 6286 360906968 360906388 4.170000e-171 612.0
19 TraesCS1D01G085300 chr3D 82.131 582 77 11 5713 6281 126392336 126392903 2.050000e-129 473.0
20 TraesCS1D01G085300 chr3D 94.000 100 5 1 4523 4621 465530651 465530552 3.930000e-32 150.0
21 TraesCS1D01G085300 chr7B 85.666 593 58 14 5712 6284 254689522 254688937 3.240000e-167 599.0
22 TraesCS1D01G085300 chr7B 97.895 95 1 1 4520 4614 432933235 432933328 5.040000e-36 163.0
23 TraesCS1D01G085300 chr5D 84.576 590 71 12 5714 6286 324112897 324113483 9.150000e-158 568.0
24 TraesCS1D01G085300 chr5D 97.674 43 1 0 2720 2762 6269181 6269139 2.430000e-09 75.0
25 TraesCS1D01G085300 chr5D 97.619 42 1 0 2720 2761 6170141 6170100 8.740000e-09 73.1
26 TraesCS1D01G085300 chr5D 97.619 42 1 0 2720 2761 329161172 329161131 8.740000e-09 73.1
27 TraesCS1D01G085300 chr4B 85.496 524 57 10 5777 6286 397022723 397023241 4.320000e-146 529.0
28 TraesCS1D01G085300 chr3B 83.247 579 81 8 5713 6284 573998810 573998241 9.340000e-143 518.0
29 TraesCS1D01G085300 chr3B 81.926 592 89 6 5711 6286 157906230 157905641 9.470000e-133 484.0
30 TraesCS1D01G085300 chr3B 85.802 162 18 4 5721 5879 431261891 431262050 3.900000e-37 167.0
31 TraesCS1D01G085300 chr3B 95.918 98 3 1 4524 4621 793269201 793269105 2.350000e-34 158.0
32 TraesCS1D01G085300 chr5A 82.624 587 80 11 5706 6286 440669585 440670155 3.380000e-137 499.0
33 TraesCS1D01G085300 chr5A 95.238 42 2 0 3853 3894 440673175 440673134 4.070000e-07 67.6
34 TraesCS1D01G085300 chr6D 83.010 206 27 6 5724 5923 386326135 386325932 5.010000e-41 180.0
35 TraesCS1D01G085300 chr6D 81.776 214 33 5 5711 5922 130209016 130208807 2.330000e-39 174.0
36 TraesCS1D01G085300 chr6D 80.734 218 35 4 5711 5923 68857341 68857556 5.040000e-36 163.0
37 TraesCS1D01G085300 chr6D 97.619 42 1 0 2720 2761 437600330 437600289 8.740000e-09 73.1
38 TraesCS1D01G085300 chr6D 97.222 36 1 0 3854 3889 35243891 35243856 1.890000e-05 62.1
39 TraesCS1D01G085300 chr6D 97.222 36 1 0 3854 3889 35257875 35257840 1.890000e-05 62.1
40 TraesCS1D01G085300 chrUn 86.310 168 18 4 5715 5879 356995564 356995729 1.800000e-40 178.0
41 TraesCS1D01G085300 chr5B 98.889 90 1 0 4520 4609 678507289 678507378 1.810000e-35 161.0
42 TraesCS1D01G085300 chr5B 92.453 106 7 1 4510 4615 35190924 35190820 3.930000e-32 150.0
43 TraesCS1D01G085300 chr5B 100.000 34 0 0 3860 3893 31117781 31117748 5.260000e-06 63.9
44 TraesCS1D01G085300 chr6B 95.918 98 4 0 4524 4621 292983065 292982968 6.520000e-35 159.0
45 TraesCS1D01G085300 chr6B 97.222 36 1 0 3854 3889 81010693 81010658 1.890000e-05 62.1
46 TraesCS1D01G085300 chr4A 92.727 110 5 3 4515 4623 697942085 697941978 8.440000e-34 156.0
47 TraesCS1D01G085300 chr2A 79.279 222 34 8 5711 5923 758051607 758051825 1.830000e-30 145.0
48 TraesCS1D01G085300 chr3A 95.122 41 2 0 3852 3892 550051384 550051424 1.460000e-06 65.8
49 TraesCS1D01G085300 chr7D 95.000 40 2 0 3855 3894 626573994 626573955 5.260000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G085300 chr1D 69613937 69620222 6285 True 11609.000000 11609 100.000000 1 6286 1 chr1D.!!$R3 6285
1 TraesCS1D01G085300 chr1A 69188707 69194197 5490 True 2563.666667 3603 92.305000 114 5713 3 chr1A.!!$R1 5599
2 TraesCS1D01G085300 chr1B 111260439 111265291 4852 True 952.950000 2495 89.473167 999 5640 6 chr1B.!!$R1 4641
3 TraesCS1D01G085300 chr4D 319337319 319337906 587 False 654.000000 654 87.140000 5711 6286 1 chr4D.!!$F2 575
4 TraesCS1D01G085300 chr4D 29871525 29872097 572 True 564.000000 564 84.838000 5713 6284 1 chr4D.!!$R1 571
5 TraesCS1D01G085300 chr3D 412820260 412820838 578 True 625.000000 625 86.509000 5710 6286 1 chr3D.!!$R2 576
6 TraesCS1D01G085300 chr3D 360906388 360906968 580 True 612.000000 612 86.149000 5713 6286 1 chr3D.!!$R1 573
7 TraesCS1D01G085300 chr3D 126392336 126392903 567 False 473.000000 473 82.131000 5713 6281 1 chr3D.!!$F1 568
8 TraesCS1D01G085300 chr7B 254688937 254689522 585 True 599.000000 599 85.666000 5712 6284 1 chr7B.!!$R1 572
9 TraesCS1D01G085300 chr5D 324112897 324113483 586 False 568.000000 568 84.576000 5714 6286 1 chr5D.!!$F1 572
10 TraesCS1D01G085300 chr4B 397022723 397023241 518 False 529.000000 529 85.496000 5777 6286 1 chr4B.!!$F1 509
11 TraesCS1D01G085300 chr3B 573998241 573998810 569 True 518.000000 518 83.247000 5713 6284 1 chr3B.!!$R2 571
12 TraesCS1D01G085300 chr3B 157905641 157906230 589 True 484.000000 484 81.926000 5711 6286 1 chr3B.!!$R1 575
13 TraesCS1D01G085300 chr5A 440669585 440670155 570 False 499.000000 499 82.624000 5706 6286 1 chr5A.!!$F1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 537 0.036294 GACCACTAGGCCAACACCTC 60.036 60.000 5.01 0.0 41.50 3.85 F
929 935 0.106708 TGCTTGTCGGCTGAAGAACT 59.893 50.000 0.00 0.0 0.00 3.01 F
932 938 0.179059 TTGTCGGCTGAAGAACTGCA 60.179 50.000 0.00 0.0 43.62 4.41 F
1277 1313 1.074072 CGACACACCAAATCCCCCA 59.926 57.895 0.00 0.0 0.00 4.96 F
1679 1722 1.516161 TGTCAGTGTCTGCTGATTGC 58.484 50.000 0.00 0.0 45.81 3.56 F
2044 2087 2.345880 GAATTGCGCCCATGCCTCAG 62.346 60.000 4.18 0.0 0.00 3.35 F
3651 3734 2.131183 CGATCTTCCTCCAGAATTCGC 58.869 52.381 0.00 0.0 34.94 4.70 F
4538 4775 0.107017 TAGGTACTCCCTCCGTTCCG 60.107 60.000 0.00 0.0 44.81 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 2067 2.043652 AGGCATGGGCGCAATTCT 60.044 55.556 10.83 2.35 42.47 2.40 R
2640 2714 2.360165 GCATAATAACTGCAAGCTGGCT 59.640 45.455 15.68 0.00 39.46 4.75 R
2646 2720 4.627611 AGCACAGCATAATAACTGCAAG 57.372 40.909 0.00 0.00 42.15 4.01 R
3065 3141 3.515630 AGATACGAGACATGTGTTGCAG 58.484 45.455 1.15 0.00 0.00 4.41 R
3651 3734 2.791383 TCACCTGAAAAATGGCAACG 57.209 45.000 0.00 0.00 42.51 4.10 R
4041 4153 4.014406 CTGGGGAACTTACCATTAACCAC 58.986 47.826 0.00 0.00 35.93 4.16 R
4592 4829 0.406750 TGGTACTCCCTCCGTTCTGA 59.593 55.000 0.00 0.00 0.00 3.27 R
5926 6498 0.033109 GGAAGGAAATGGTGGAGGGG 60.033 60.000 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.846754 GCCTTTGGCCCCCAAACA 60.847 61.111 0.00 0.00 46.92 2.83
63 64 2.223443 GCCTTTGGCCCCCAAACAT 61.223 57.895 0.00 0.00 46.92 2.71
64 65 1.982430 CCTTTGGCCCCCAAACATC 59.018 57.895 0.00 0.00 46.92 3.06
65 66 1.552799 CCTTTGGCCCCCAAACATCC 61.553 60.000 0.00 0.00 46.92 3.51
66 67 0.835543 CTTTGGCCCCCAAACATCCA 60.836 55.000 0.00 0.00 46.92 3.41
67 68 0.178879 TTTGGCCCCCAAACATCCAT 60.179 50.000 0.00 0.00 46.92 3.41
68 69 0.178879 TTGGCCCCCAAACATCCATT 60.179 50.000 0.00 0.00 40.92 3.16
69 70 0.712979 TGGCCCCCAAACATCCATTA 59.287 50.000 0.00 0.00 0.00 1.90
70 71 1.293458 TGGCCCCCAAACATCCATTAT 59.707 47.619 0.00 0.00 0.00 1.28
71 72 2.293452 TGGCCCCCAAACATCCATTATT 60.293 45.455 0.00 0.00 0.00 1.40
72 73 2.777114 GGCCCCCAAACATCCATTATTT 59.223 45.455 0.00 0.00 0.00 1.40
73 74 3.433456 GGCCCCCAAACATCCATTATTTG 60.433 47.826 0.00 0.00 33.90 2.32
74 75 3.199727 GCCCCCAAACATCCATTATTTGT 59.800 43.478 0.00 0.00 32.53 2.83
75 76 4.768583 CCCCCAAACATCCATTATTTGTG 58.231 43.478 0.00 0.00 32.53 3.33
76 77 4.190772 CCCCAAACATCCATTATTTGTGC 58.809 43.478 0.00 0.00 32.53 4.57
77 78 4.080975 CCCCAAACATCCATTATTTGTGCT 60.081 41.667 0.00 0.00 32.53 4.40
78 79 5.490159 CCCAAACATCCATTATTTGTGCTT 58.510 37.500 0.00 0.00 32.53 3.91
79 80 5.939296 CCCAAACATCCATTATTTGTGCTTT 59.061 36.000 0.00 0.00 32.53 3.51
80 81 6.092533 CCCAAACATCCATTATTTGTGCTTTC 59.907 38.462 0.00 0.00 32.53 2.62
81 82 6.092533 CCAAACATCCATTATTTGTGCTTTCC 59.907 38.462 0.00 0.00 32.53 3.13
82 83 5.343307 ACATCCATTATTTGTGCTTTCCC 57.657 39.130 0.00 0.00 0.00 3.97
83 84 4.162131 ACATCCATTATTTGTGCTTTCCCC 59.838 41.667 0.00 0.00 0.00 4.81
84 85 3.103742 TCCATTATTTGTGCTTTCCCCC 58.896 45.455 0.00 0.00 0.00 5.40
85 86 3.106827 CCATTATTTGTGCTTTCCCCCT 58.893 45.455 0.00 0.00 0.00 4.79
86 87 3.118665 CCATTATTTGTGCTTTCCCCCTG 60.119 47.826 0.00 0.00 0.00 4.45
87 88 3.534357 TTATTTGTGCTTTCCCCCTGA 57.466 42.857 0.00 0.00 0.00 3.86
88 89 2.397044 ATTTGTGCTTTCCCCCTGAA 57.603 45.000 0.00 0.00 0.00 3.02
89 90 2.397044 TTTGTGCTTTCCCCCTGAAT 57.603 45.000 0.00 0.00 31.67 2.57
90 91 3.534357 TTTGTGCTTTCCCCCTGAATA 57.466 42.857 0.00 0.00 31.67 1.75
91 92 3.756082 TTGTGCTTTCCCCCTGAATAT 57.244 42.857 0.00 0.00 31.67 1.28
92 93 3.297134 TGTGCTTTCCCCCTGAATATC 57.703 47.619 0.00 0.00 31.67 1.63
93 94 2.091885 TGTGCTTTCCCCCTGAATATCC 60.092 50.000 0.00 0.00 31.67 2.59
94 95 2.175715 GTGCTTTCCCCCTGAATATCCT 59.824 50.000 0.00 0.00 31.67 3.24
95 96 2.175499 TGCTTTCCCCCTGAATATCCTG 59.825 50.000 0.00 0.00 31.67 3.86
96 97 2.868899 CTTTCCCCCTGAATATCCTGC 58.131 52.381 0.00 0.00 31.67 4.85
97 98 1.149101 TTCCCCCTGAATATCCTGCC 58.851 55.000 0.00 0.00 0.00 4.85
98 99 0.271927 TCCCCCTGAATATCCTGCCT 59.728 55.000 0.00 0.00 0.00 4.75
99 100 1.512194 TCCCCCTGAATATCCTGCCTA 59.488 52.381 0.00 0.00 0.00 3.93
100 101 1.912043 CCCCCTGAATATCCTGCCTAG 59.088 57.143 0.00 0.00 0.00 3.02
101 102 1.280421 CCCCTGAATATCCTGCCTAGC 59.720 57.143 0.00 0.00 0.00 3.42
102 103 2.264455 CCCTGAATATCCTGCCTAGCT 58.736 52.381 0.00 0.00 0.00 3.32
103 104 2.235898 CCCTGAATATCCTGCCTAGCTC 59.764 54.545 0.00 0.00 0.00 4.09
104 105 2.902486 CCTGAATATCCTGCCTAGCTCA 59.098 50.000 0.00 0.00 0.00 4.26
105 106 3.055963 CCTGAATATCCTGCCTAGCTCAG 60.056 52.174 0.00 0.00 0.00 3.35
106 107 2.301296 TGAATATCCTGCCTAGCTCAGC 59.699 50.000 0.00 0.00 0.00 4.26
107 108 1.274712 ATATCCTGCCTAGCTCAGCC 58.725 55.000 0.00 0.00 0.00 4.85
108 109 0.105504 TATCCTGCCTAGCTCAGCCA 60.106 55.000 0.00 0.00 0.00 4.75
109 110 0.767446 ATCCTGCCTAGCTCAGCCAT 60.767 55.000 0.00 0.00 0.00 4.40
110 111 0.984961 TCCTGCCTAGCTCAGCCATT 60.985 55.000 0.00 0.00 0.00 3.16
111 112 0.818445 CCTGCCTAGCTCAGCCATTG 60.818 60.000 0.00 0.00 0.00 2.82
112 113 0.179702 CTGCCTAGCTCAGCCATTGA 59.820 55.000 0.00 0.00 0.00 2.57
156 157 1.305219 GCTCGCCATGCCAACACTAA 61.305 55.000 0.00 0.00 0.00 2.24
157 158 1.382522 CTCGCCATGCCAACACTAAT 58.617 50.000 0.00 0.00 0.00 1.73
186 187 2.146342 CCACAACTAGACCTGCAACAG 58.854 52.381 0.00 0.00 0.00 3.16
199 200 2.281070 AACAGGTGCAGGCTGTCG 60.281 61.111 17.16 2.99 0.00 4.35
208 209 2.048503 AGGCTGTCGTGGCGTTAC 60.049 61.111 0.00 0.00 37.59 2.50
214 215 4.281947 TCGTGGCGTTACCGTGCA 62.282 61.111 0.00 0.00 43.94 4.57
224 225 0.961857 TTACCGTGCAGCCTCGTAGA 60.962 55.000 0.00 0.00 0.00 2.59
251 253 3.353836 CCCTTGTCGCAACACCGG 61.354 66.667 0.00 0.00 34.35 5.28
276 278 0.394352 GCCTTGTGGTACCATCCCAG 60.394 60.000 19.72 11.24 35.27 4.45
279 281 0.998928 TTGTGGTACCATCCCAGCAT 59.001 50.000 19.72 0.00 31.13 3.79
285 287 0.181114 TACCATCCCAGCATGACAGC 59.819 55.000 0.00 0.00 39.69 4.40
291 293 3.200593 CAGCATGACAGCGGCCTC 61.201 66.667 0.00 0.00 39.69 4.70
382 384 8.349568 ACATGGTTTTCTCCTTTATAAACTCC 57.650 34.615 0.00 0.00 32.53 3.85
383 385 7.947890 ACATGGTTTTCTCCTTTATAAACTCCA 59.052 33.333 0.00 0.00 32.53 3.86
398 400 2.654863 ACTCCACCACACCTGAAAAAG 58.345 47.619 0.00 0.00 0.00 2.27
403 405 1.328279 CCACACCTGAAAAAGTCCCC 58.672 55.000 0.00 0.00 0.00 4.81
412 414 1.716028 AAAAAGTCCCCTGCCTCCGT 61.716 55.000 0.00 0.00 0.00 4.69
434 436 0.668706 CTGGTGTGAGCAGGTCTTCG 60.669 60.000 0.38 0.00 39.87 3.79
445 447 1.066587 GGTCTTCGCGGATGAGGAG 59.933 63.158 6.13 0.00 0.00 3.69
447 449 1.076995 TCTTCGCGGATGAGGAGGA 60.077 57.895 6.13 0.00 0.00 3.71
454 456 1.169661 CGGATGAGGAGGACGAGGAG 61.170 65.000 0.00 0.00 0.00 3.69
457 459 0.631753 ATGAGGAGGACGAGGAGGAA 59.368 55.000 0.00 0.00 0.00 3.36
464 466 2.037381 GAGGACGAGGAGGAAGTGTTTT 59.963 50.000 0.00 0.00 0.00 2.43
465 467 2.438392 AGGACGAGGAGGAAGTGTTTTT 59.562 45.455 0.00 0.00 0.00 1.94
501 503 2.100605 AGAGGAAGCGTTGGTGATTC 57.899 50.000 0.00 0.00 0.00 2.52
504 506 0.872388 GGAAGCGTTGGTGATTCGTT 59.128 50.000 0.00 0.00 0.00 3.85
506 508 0.872388 AAGCGTTGGTGATTCGTTCC 59.128 50.000 0.00 0.00 0.00 3.62
510 512 2.030401 TTGGTGATTCGTTCCGCCG 61.030 57.895 0.00 0.00 0.00 6.46
511 513 2.433664 GGTGATTCGTTCCGCCGT 60.434 61.111 0.00 0.00 0.00 5.68
518 520 1.286354 TTCGTTCCGCCGTCAATGAC 61.286 55.000 2.75 2.75 0.00 3.06
522 524 2.047274 CCGCCGTCAATGACCACT 60.047 61.111 7.91 0.00 0.00 4.00
535 537 0.036294 GACCACTAGGCCAACACCTC 60.036 60.000 5.01 0.00 41.50 3.85
542 544 1.303317 GGCCAACACCTCCAACGAT 60.303 57.895 0.00 0.00 0.00 3.73
579 581 9.338622 ACATGAGTAGCTAGTTTGTTAGTTTTT 57.661 29.630 1.78 0.00 0.00 1.94
603 605 3.496130 GCTATGCACGTAGATGAAATGCT 59.504 43.478 0.00 0.00 37.20 3.79
605 607 5.388890 GCTATGCACGTAGATGAAATGCTAC 60.389 44.000 0.00 0.00 37.20 3.58
606 608 3.855858 TGCACGTAGATGAAATGCTACA 58.144 40.909 0.00 0.00 37.44 2.74
649 651 7.056635 AGAAATGAGACTATGGTTACAATGGG 58.943 38.462 0.00 0.00 0.00 4.00
650 652 5.975988 ATGAGACTATGGTTACAATGGGT 57.024 39.130 0.00 0.00 0.00 4.51
652 654 7.633018 ATGAGACTATGGTTACAATGGGTAT 57.367 36.000 0.00 0.00 0.00 2.73
653 655 6.826668 TGAGACTATGGTTACAATGGGTATG 58.173 40.000 0.00 0.00 0.00 2.39
654 656 6.613679 TGAGACTATGGTTACAATGGGTATGA 59.386 38.462 0.00 0.00 0.00 2.15
655 657 7.292356 TGAGACTATGGTTACAATGGGTATGAT 59.708 37.037 0.00 0.00 0.00 2.45
656 658 8.736097 AGACTATGGTTACAATGGGTATGATA 57.264 34.615 0.00 0.00 0.00 2.15
657 659 9.338968 AGACTATGGTTACAATGGGTATGATAT 57.661 33.333 0.00 0.00 0.00 1.63
658 660 9.383519 GACTATGGTTACAATGGGTATGATATG 57.616 37.037 0.00 0.00 0.00 1.78
659 661 9.111519 ACTATGGTTACAATGGGTATGATATGA 57.888 33.333 0.00 0.00 0.00 2.15
661 663 6.778821 TGGTTACAATGGGTATGATATGAGG 58.221 40.000 0.00 0.00 0.00 3.86
663 665 6.012858 GGTTACAATGGGTATGATATGAGGGA 60.013 42.308 0.00 0.00 0.00 4.20
664 666 7.311929 GGTTACAATGGGTATGATATGAGGGAT 60.312 40.741 0.00 0.00 0.00 3.85
665 667 6.070951 ACAATGGGTATGATATGAGGGATG 57.929 41.667 0.00 0.00 0.00 3.51
666 668 5.792188 ACAATGGGTATGATATGAGGGATGA 59.208 40.000 0.00 0.00 0.00 2.92
667 669 6.449368 ACAATGGGTATGATATGAGGGATGAT 59.551 38.462 0.00 0.00 0.00 2.45
668 670 6.760440 ATGGGTATGATATGAGGGATGATC 57.240 41.667 0.00 0.00 0.00 2.92
676 678 1.287503 GAGGGATGATCGGACGCTC 59.712 63.158 12.16 12.16 36.71 5.03
691 693 2.029844 GCTCTCCGCAAAAGCGTCT 61.030 57.895 9.11 0.00 38.92 4.18
692 694 1.784062 CTCTCCGCAAAAGCGTCTG 59.216 57.895 9.11 0.00 0.00 3.51
694 696 0.249699 TCTCCGCAAAAGCGTCTGAA 60.250 50.000 9.11 0.00 0.00 3.02
695 697 0.798776 CTCCGCAAAAGCGTCTGAAT 59.201 50.000 9.11 0.00 0.00 2.57
696 698 0.516877 TCCGCAAAAGCGTCTGAATG 59.483 50.000 9.11 0.00 0.00 2.67
697 699 0.238289 CCGCAAAAGCGTCTGAATGT 59.762 50.000 9.11 0.00 0.00 2.71
707 709 1.464608 CGTCTGAATGTGTCCGCAAAT 59.535 47.619 0.00 0.00 0.00 2.32
715 717 8.147704 TCTGAATGTGTCCGCAAATATATAAGA 58.852 33.333 0.00 0.00 0.00 2.10
717 719 8.556194 TGAATGTGTCCGCAAATATATAAGAAC 58.444 33.333 0.00 0.00 0.00 3.01
720 722 7.269316 TGTGTCCGCAAATATATAAGAACTCA 58.731 34.615 0.00 0.00 0.00 3.41
721 723 7.438160 TGTGTCCGCAAATATATAAGAACTCAG 59.562 37.037 0.00 0.00 0.00 3.35
760 762 3.926527 TGCAGATGTTGTAAGACACGATC 59.073 43.478 0.00 0.00 31.30 3.69
764 766 6.020281 GCAGATGTTGTAAGACACGATCTAAG 60.020 42.308 0.00 0.00 36.27 2.18
776 778 6.483974 AGACACGATCTAAGATACGACTGATT 59.516 38.462 0.00 0.00 35.15 2.57
786 788 9.698309 CTAAGATACGACTGATTTATCAACCAT 57.302 33.333 0.00 0.00 36.18 3.55
788 790 8.370493 AGATACGACTGATTTATCAACCATTG 57.630 34.615 0.00 0.00 36.18 2.82
791 793 7.303634 ACGACTGATTTATCAACCATTGTAC 57.696 36.000 0.00 0.00 36.18 2.90
792 794 6.035650 ACGACTGATTTATCAACCATTGTACG 59.964 38.462 0.00 0.00 36.18 3.67
795 797 5.874831 TGATTTATCAACCATTGTACGTGC 58.125 37.500 0.00 0.00 33.08 5.34
800 802 3.845178 TCAACCATTGTACGTGCTCTAG 58.155 45.455 4.97 0.00 0.00 2.43
875 881 2.015736 TCTCGAATCCAGCAAAGAGC 57.984 50.000 0.00 0.00 46.19 4.09
904 910 3.755628 GCGGTGGGCTGACTCGTA 61.756 66.667 0.00 0.00 39.11 3.43
907 913 2.722201 GGTGGGCTGACTCGTAGGG 61.722 68.421 0.00 0.00 0.00 3.53
925 931 2.684843 GCCTGCTTGTCGGCTGAAG 61.685 63.158 0.00 0.00 42.98 3.02
926 932 1.004560 CCTGCTTGTCGGCTGAAGA 60.005 57.895 0.00 0.00 33.89 2.87
927 933 0.603707 CCTGCTTGTCGGCTGAAGAA 60.604 55.000 0.00 0.00 33.89 2.52
928 934 0.514691 CTGCTTGTCGGCTGAAGAAC 59.485 55.000 0.00 0.00 33.89 3.01
929 935 0.106708 TGCTTGTCGGCTGAAGAACT 59.893 50.000 0.00 0.00 0.00 3.01
930 936 0.514691 GCTTGTCGGCTGAAGAACTG 59.485 55.000 0.00 0.00 0.00 3.16
931 937 0.514691 CTTGTCGGCTGAAGAACTGC 59.485 55.000 0.00 0.00 41.63 4.40
932 938 0.179059 TTGTCGGCTGAAGAACTGCA 60.179 50.000 0.00 0.00 43.62 4.41
1277 1313 1.074072 CGACACACCAAATCCCCCA 59.926 57.895 0.00 0.00 0.00 4.96
1298 1334 3.465403 CTCCACGCCCTCTCCCTG 61.465 72.222 0.00 0.00 0.00 4.45
1303 1339 3.787001 CGCCCTCTCCCTGAACCC 61.787 72.222 0.00 0.00 0.00 4.11
1309 1345 1.560146 CCTCTCCCTGAACCCTAAACC 59.440 57.143 0.00 0.00 0.00 3.27
1326 1369 1.999002 CCCTAGCCCCCTTTTCCGA 60.999 63.158 0.00 0.00 0.00 4.55
1498 1541 3.119137 CGGATTCTCATGTGTCAGTACCA 60.119 47.826 0.00 0.00 0.00 3.25
1509 1552 3.251729 GTGTCAGTACCAGTTACGAGTGA 59.748 47.826 0.00 0.00 35.61 3.41
1533 1576 9.109393 TGATGATGTAAAATTAACTAGTCTGGC 57.891 33.333 0.00 0.00 0.00 4.85
1646 1689 9.559958 CATTCAATCACTTTGTACTTTCCATAC 57.440 33.333 0.00 0.00 36.65 2.39
1679 1722 1.516161 TGTCAGTGTCTGCTGATTGC 58.484 50.000 0.00 0.00 45.81 3.56
1692 1735 3.163594 GCTGATTGCGTCATTGTTGTAC 58.836 45.455 0.00 0.00 35.97 2.90
1693 1736 3.120199 GCTGATTGCGTCATTGTTGTACT 60.120 43.478 0.00 0.00 35.97 2.73
1696 1739 6.164408 TGATTGCGTCATTGTTGTACTAAG 57.836 37.500 0.00 0.00 0.00 2.18
1718 1761 4.832823 AGTAGCTTAACCCAAGTGCAATTT 59.167 37.500 0.00 0.00 36.55 1.82
1792 1835 9.791801 AAAACTTCATTGGGTATTTGCTTAAAT 57.208 25.926 0.00 0.00 0.00 1.40
1826 1869 6.317140 AGCTACATGAAGATGTTAACCACATG 59.683 38.462 17.44 17.44 46.96 3.21
2044 2087 2.345880 GAATTGCGCCCATGCCTCAG 62.346 60.000 4.18 0.00 0.00 3.35
2192 2236 4.474651 AGTATCACAATCCTCCATGGTTCA 59.525 41.667 12.58 0.00 37.07 3.18
2204 2248 5.280882 CCTCCATGGTTCAGGATTAGCATAT 60.281 44.000 12.58 0.00 32.53 1.78
2364 2409 6.993308 TGTGTGCCCGCTATTCTAATTAATTA 59.007 34.615 7.66 7.66 0.00 1.40
2534 2579 2.367894 CGGGGGTAAGTTCCTATCCTTC 59.632 54.545 0.00 0.00 0.00 3.46
2640 2714 6.778821 TGGAATTTCCATGTTCTGACTAAGA 58.221 36.000 14.24 0.00 42.67 2.10
2646 2720 2.751166 TGTTCTGACTAAGAGCCAGC 57.249 50.000 0.00 0.00 35.35 4.85
2804 2878 6.020440 CACGTTCAAAATAATTGCTGCATAGG 60.020 38.462 1.84 0.00 0.00 2.57
2870 2944 4.261801 GCCAAACAGAGCCTAAGTAATCA 58.738 43.478 0.00 0.00 0.00 2.57
2874 2948 7.047891 CCAAACAGAGCCTAAGTAATCATGTA 58.952 38.462 0.00 0.00 0.00 2.29
3168 3247 7.753132 CAGTCACAGAACTTCTCTTACATACTC 59.247 40.741 0.00 0.00 29.07 2.59
3235 3314 8.608844 ATTCTTCAACTAGTACTTGTTTCCTG 57.391 34.615 18.30 9.64 0.00 3.86
3238 3317 5.054477 TCAACTAGTACTTGTTTCCTGCAC 58.946 41.667 18.30 0.00 0.00 4.57
3290 3372 8.806146 ACAAATTATCAGATGCCTAGTTTTGTT 58.194 29.630 0.00 0.00 31.60 2.83
3370 3452 5.539048 TGAATCTAGCCCGTAAGCTAATTC 58.461 41.667 16.47 16.47 44.49 2.17
3391 3473 7.790782 ATTCCCCTTAAGTTTAGCATTTTCA 57.209 32.000 0.97 0.00 0.00 2.69
3584 3666 5.679355 TGCGTTAATTTCTTTGCGTATATGC 59.321 36.000 10.13 10.13 0.00 3.14
3608 3690 5.463724 CAGAGTTGTAGACCTTGTTCAGTTC 59.536 44.000 0.00 0.00 0.00 3.01
3651 3734 2.131183 CGATCTTCCTCCAGAATTCGC 58.869 52.381 0.00 0.00 34.94 4.70
3911 4023 2.602257 TGCGTATGTGGAAGATGAGG 57.398 50.000 0.00 0.00 0.00 3.86
3920 4032 7.255836 CGTATGTGGAAGATGAGGGATAAACTA 60.256 40.741 0.00 0.00 0.00 2.24
3975 4087 5.393027 CCTGGTTATGCAATCCAACTTGTAC 60.393 44.000 8.73 0.00 0.00 2.90
4041 4153 1.538512 CCAGAAACTCACATGCACCAG 59.461 52.381 0.00 0.00 0.00 4.00
4045 4157 0.183492 AACTCACATGCACCAGTGGT 59.817 50.000 9.70 9.70 36.43 4.16
4047 4159 1.419762 ACTCACATGCACCAGTGGTTA 59.580 47.619 13.62 5.14 36.43 2.85
4048 4160 2.158682 ACTCACATGCACCAGTGGTTAA 60.159 45.455 13.62 3.80 36.43 2.01
4094 4206 4.469945 TCCTTACTGGCTTTAGCACTGTAT 59.530 41.667 3.88 0.00 44.36 2.29
4095 4207 5.659525 TCCTTACTGGCTTTAGCACTGTATA 59.340 40.000 3.88 0.74 44.36 1.47
4425 4662 4.697828 TCATGTTGCTGCCTCGTTATTTAA 59.302 37.500 0.00 0.00 0.00 1.52
4435 4672 4.321378 GCCTCGTTATTTAAAGGGTTTGCA 60.321 41.667 0.00 0.00 0.00 4.08
4472 4709 2.957491 TTTGTTGGAGCACAAACTGG 57.043 45.000 2.97 0.00 40.88 4.00
4523 4760 5.836024 TCAATAGGAACACCAAACTAGGT 57.164 39.130 0.00 0.00 44.48 3.08
4524 4761 6.938698 TCAATAGGAACACCAAACTAGGTA 57.061 37.500 0.00 0.00 40.77 3.08
4525 4762 6.704310 TCAATAGGAACACCAAACTAGGTAC 58.296 40.000 0.00 0.00 40.77 3.34
4526 4763 6.499350 TCAATAGGAACACCAAACTAGGTACT 59.501 38.462 0.00 0.00 40.77 2.73
4527 4764 4.886496 AGGAACACCAAACTAGGTACTC 57.114 45.455 0.00 0.00 40.77 2.59
4528 4765 3.581770 AGGAACACCAAACTAGGTACTCC 59.418 47.826 0.00 0.00 40.77 3.85
4529 4766 3.307269 GGAACACCAAACTAGGTACTCCC 60.307 52.174 0.00 0.00 40.77 4.30
4531 4768 3.171528 ACACCAAACTAGGTACTCCCTC 58.828 50.000 0.00 0.00 44.81 4.30
4532 4769 2.500504 CACCAAACTAGGTACTCCCTCC 59.499 54.545 0.00 0.00 44.81 4.30
4533 4770 1.755380 CCAAACTAGGTACTCCCTCCG 59.245 57.143 0.00 0.00 44.81 4.63
4534 4771 2.454538 CAAACTAGGTACTCCCTCCGT 58.545 52.381 0.00 0.00 44.81 4.69
4535 4772 2.830321 CAAACTAGGTACTCCCTCCGTT 59.170 50.000 0.00 0.00 44.81 4.44
4536 4773 2.433662 ACTAGGTACTCCCTCCGTTC 57.566 55.000 0.00 0.00 44.81 3.95
4537 4774 1.064091 ACTAGGTACTCCCTCCGTTCC 60.064 57.143 0.00 0.00 44.81 3.62
4538 4775 0.107017 TAGGTACTCCCTCCGTTCCG 60.107 60.000 0.00 0.00 44.81 4.30
4539 4776 1.379044 GGTACTCCCTCCGTTCCGA 60.379 63.158 0.00 0.00 0.00 4.55
4540 4777 0.754587 GGTACTCCCTCCGTTCCGAT 60.755 60.000 0.00 0.00 0.00 4.18
4541 4778 1.109609 GTACTCCCTCCGTTCCGATT 58.890 55.000 0.00 0.00 0.00 3.34
4542 4779 1.479730 GTACTCCCTCCGTTCCGATTT 59.520 52.381 0.00 0.00 0.00 2.17
4543 4780 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
4544 4781 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
4545 4782 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
4546 4783 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
4548 4785 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
4549 4786 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
4550 4787 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
4551 4788 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
4552 4789 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
4553 4790 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
4554 4791 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
4555 4792 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
4556 4793 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
4557 4794 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
4558 4795 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
4559 4796 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
4560 4797 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
4561 4798 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
4562 4799 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
4563 4800 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
4564 4801 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
4565 4802 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
4566 4803 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
4567 4804 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
4568 4805 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
4569 4806 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
4570 4807 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
4571 4808 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
4584 4821 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
4585 4822 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
4586 4823 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
4587 4824 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
4588 4825 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
4589 4826 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
4590 4827 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
4591 4828 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
4592 4829 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
4593 4830 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
4594 4831 5.531634 ACTAAAACCACGACGAGTAAATCA 58.468 37.500 0.00 0.00 0.00 2.57
4595 4832 4.985044 AAAACCACGACGAGTAAATCAG 57.015 40.909 0.00 0.00 0.00 2.90
4596 4833 3.928727 AACCACGACGAGTAAATCAGA 57.071 42.857 0.00 0.00 0.00 3.27
4597 4834 3.928727 ACCACGACGAGTAAATCAGAA 57.071 42.857 0.00 0.00 0.00 3.02
4598 4835 3.572584 ACCACGACGAGTAAATCAGAAC 58.427 45.455 0.00 0.00 0.00 3.01
4599 4836 2.592897 CCACGACGAGTAAATCAGAACG 59.407 50.000 0.00 0.00 0.00 3.95
4600 4837 2.592897 CACGACGAGTAAATCAGAACGG 59.407 50.000 0.00 0.00 0.00 4.44
4601 4838 2.485426 ACGACGAGTAAATCAGAACGGA 59.515 45.455 0.00 0.00 0.00 4.69
4602 4839 3.099362 CGACGAGTAAATCAGAACGGAG 58.901 50.000 0.00 0.00 0.00 4.63
4603 4840 3.436496 GACGAGTAAATCAGAACGGAGG 58.564 50.000 0.00 0.00 0.00 4.30
4604 4841 2.165845 ACGAGTAAATCAGAACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
4605 4842 2.426024 CGAGTAAATCAGAACGGAGGGA 59.574 50.000 0.00 0.00 0.00 4.20
4771 5009 1.419387 GATGCATCTAAGTCTGGCCCT 59.581 52.381 19.70 0.00 0.00 5.19
4856 5353 3.698250 CCCTGAAGGTGTCGAACAA 57.302 52.632 0.00 0.00 0.00 2.83
4883 5380 5.074929 TGAAACCTATTGGCAGGGATATGAT 59.925 40.000 9.59 0.00 40.29 2.45
5013 5512 2.281070 AGTGCTTGTGCCCAGTCG 60.281 61.111 0.00 0.00 38.71 4.18
5027 5526 2.394708 CCAGTCGTTCTACACACTGTG 58.605 52.381 7.68 7.68 39.75 3.66
5282 5781 6.878317 TGGTCTAGGAATGATGTTTACAGAG 58.122 40.000 0.00 0.00 0.00 3.35
5297 5796 9.654663 ATGTTTACAGAGTAGAGTGTTTATTCC 57.345 33.333 0.00 0.00 0.00 3.01
5313 5812 8.341173 GTGTTTATTCCATCTTATCTCTGCTTG 58.659 37.037 0.00 0.00 0.00 4.01
5364 5863 7.043192 GCTTGATATGGTGAATTTGCAATACAC 60.043 37.037 17.08 17.08 0.00 2.90
5388 5887 1.888512 ACATGATGTGGCACTGGTTTC 59.111 47.619 19.83 8.38 0.00 2.78
5392 5891 1.537202 GATGTGGCACTGGTTTCTGTC 59.463 52.381 19.83 0.00 0.00 3.51
5403 5915 1.545651 GGTTTCTGTCTCACCAAGGGG 60.546 57.143 0.00 0.00 41.29 4.79
5404 5916 1.420138 GTTTCTGTCTCACCAAGGGGA 59.580 52.381 0.00 0.00 38.05 4.81
5519 6033 3.066760 CAGGGATGGGATTAAAAACGAGC 59.933 47.826 0.00 0.00 0.00 5.03
5538 6052 1.667722 GCCTTCAAACTTGGGCCAG 59.332 57.895 6.23 3.69 38.77 4.85
5612 6129 3.226347 GTTCTGTACAAGATTGTTGCGC 58.774 45.455 0.00 0.00 42.35 6.09
5654 6171 5.934935 ACCTTTTTGTATGTACACTTCGG 57.065 39.130 0.00 0.00 35.64 4.30
5660 6177 2.756760 TGTATGTACACTTCGGAGGGTC 59.243 50.000 0.00 0.00 39.27 4.46
5670 6187 4.039730 CACTTCGGAGGGTCATATTCATCT 59.960 45.833 0.00 0.00 0.00 2.90
5701 6218 3.877508 CGAGTTTTCTTTGTGGACCTCTT 59.122 43.478 0.00 0.00 0.00 2.85
5717 6234 3.207354 TTAGCGCGGCTAAGAGCT 58.793 55.556 8.83 9.81 44.75 4.09
5772 6291 2.867472 GTTTGGTCGGCATGGACG 59.133 61.111 0.00 0.00 37.82 4.79
5830 6360 1.010419 GTTCGCTTTTCGTCCGCCTA 61.010 55.000 0.00 0.00 39.67 3.93
5880 6447 2.103538 GCGAACACGAGGCGGATA 59.896 61.111 0.00 0.00 0.00 2.59
5961 6542 2.393646 CTTCCACTTTCCCAAAACCCA 58.606 47.619 0.00 0.00 0.00 4.51
5963 6544 1.289530 TCCACTTTCCCAAAACCCACT 59.710 47.619 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.530682 TTTGGGGGCCAAAGGCTATATTTTT 61.531 40.000 4.39 0.00 46.92 1.94
37 38 5.070722 TTTGGGGGCCAAAGGCTATATTTT 61.071 41.667 4.39 0.00 46.92 1.82
38 39 3.569903 TTTGGGGGCCAAAGGCTATATTT 60.570 43.478 4.39 0.00 46.92 1.40
39 40 2.022527 TTTGGGGGCCAAAGGCTATATT 60.023 45.455 4.39 0.00 46.92 1.28
40 41 1.578215 TTTGGGGGCCAAAGGCTATAT 59.422 47.619 4.39 0.00 46.92 0.86
41 42 1.011595 TTTGGGGGCCAAAGGCTATA 58.988 50.000 4.39 0.00 46.92 1.31
42 43 1.787112 TTTGGGGGCCAAAGGCTAT 59.213 52.632 4.39 0.00 46.92 2.97
43 44 3.277408 TTTGGGGGCCAAAGGCTA 58.723 55.556 4.39 0.00 46.92 3.93
49 50 0.178879 AATGGATGTTTGGGGGCCAA 60.179 50.000 4.39 0.00 42.29 4.52
50 51 0.712979 TAATGGATGTTTGGGGGCCA 59.287 50.000 4.39 0.00 0.00 5.36
51 52 2.101640 ATAATGGATGTTTGGGGGCC 57.898 50.000 0.00 0.00 0.00 5.80
52 53 3.199727 ACAAATAATGGATGTTTGGGGGC 59.800 43.478 0.00 0.00 37.20 5.80
53 54 4.768583 CACAAATAATGGATGTTTGGGGG 58.231 43.478 0.00 0.00 37.20 5.40
54 55 4.080975 AGCACAAATAATGGATGTTTGGGG 60.081 41.667 2.81 0.00 36.88 4.96
55 56 5.088680 AGCACAAATAATGGATGTTTGGG 57.911 39.130 0.00 0.00 38.83 4.12
56 57 6.092533 GGAAAGCACAAATAATGGATGTTTGG 59.907 38.462 0.00 0.00 37.20 3.28
57 58 6.092533 GGGAAAGCACAAATAATGGATGTTTG 59.907 38.462 0.00 0.00 38.46 2.93
58 59 6.172630 GGGAAAGCACAAATAATGGATGTTT 58.827 36.000 0.00 0.00 0.00 2.83
59 60 5.338300 GGGGAAAGCACAAATAATGGATGTT 60.338 40.000 0.00 0.00 0.00 2.71
60 61 4.162131 GGGGAAAGCACAAATAATGGATGT 59.838 41.667 0.00 0.00 0.00 3.06
61 62 4.443315 GGGGGAAAGCACAAATAATGGATG 60.443 45.833 0.00 0.00 0.00 3.51
62 63 3.711190 GGGGGAAAGCACAAATAATGGAT 59.289 43.478 0.00 0.00 0.00 3.41
63 64 3.103742 GGGGGAAAGCACAAATAATGGA 58.896 45.455 0.00 0.00 0.00 3.41
64 65 3.106827 AGGGGGAAAGCACAAATAATGG 58.893 45.455 0.00 0.00 0.00 3.16
65 66 3.768757 TCAGGGGGAAAGCACAAATAATG 59.231 43.478 0.00 0.00 0.00 1.90
66 67 4.059773 TCAGGGGGAAAGCACAAATAAT 57.940 40.909 0.00 0.00 0.00 1.28
67 68 3.534357 TCAGGGGGAAAGCACAAATAA 57.466 42.857 0.00 0.00 0.00 1.40
68 69 3.534357 TTCAGGGGGAAAGCACAAATA 57.466 42.857 0.00 0.00 30.98 1.40
69 70 2.397044 TTCAGGGGGAAAGCACAAAT 57.603 45.000 0.00 0.00 30.98 2.32
70 71 2.397044 ATTCAGGGGGAAAGCACAAA 57.603 45.000 0.00 0.00 39.39 2.83
71 72 3.627237 GGATATTCAGGGGGAAAGCACAA 60.627 47.826 0.00 0.00 39.39 3.33
72 73 2.091885 GGATATTCAGGGGGAAAGCACA 60.092 50.000 0.00 0.00 39.39 4.57
73 74 2.175715 AGGATATTCAGGGGGAAAGCAC 59.824 50.000 0.00 0.00 39.39 4.40
74 75 2.175499 CAGGATATTCAGGGGGAAAGCA 59.825 50.000 0.00 0.00 39.39 3.91
75 76 2.868899 CAGGATATTCAGGGGGAAAGC 58.131 52.381 0.00 0.00 39.39 3.51
76 77 2.489802 GGCAGGATATTCAGGGGGAAAG 60.490 54.545 0.00 0.00 39.39 2.62
77 78 1.499007 GGCAGGATATTCAGGGGGAAA 59.501 52.381 0.00 0.00 39.39 3.13
78 79 1.149101 GGCAGGATATTCAGGGGGAA 58.851 55.000 0.00 0.00 40.46 3.97
79 80 0.271927 AGGCAGGATATTCAGGGGGA 59.728 55.000 0.00 0.00 0.00 4.81
80 81 1.912043 CTAGGCAGGATATTCAGGGGG 59.088 57.143 0.00 0.00 0.00 5.40
81 82 1.280421 GCTAGGCAGGATATTCAGGGG 59.720 57.143 0.00 0.00 0.00 4.79
82 83 2.235898 GAGCTAGGCAGGATATTCAGGG 59.764 54.545 0.00 0.00 0.00 4.45
83 84 2.902486 TGAGCTAGGCAGGATATTCAGG 59.098 50.000 0.00 0.00 0.00 3.86
84 85 3.617045 GCTGAGCTAGGCAGGATATTCAG 60.617 52.174 0.00 0.00 35.20 3.02
85 86 2.301296 GCTGAGCTAGGCAGGATATTCA 59.699 50.000 0.00 0.00 34.00 2.57
86 87 2.971307 GCTGAGCTAGGCAGGATATTC 58.029 52.381 0.00 0.00 34.00 1.75
96 97 2.559440 GAAGTCAATGGCTGAGCTAGG 58.441 52.381 3.72 0.00 33.60 3.02
97 98 2.093288 TGGAAGTCAATGGCTGAGCTAG 60.093 50.000 3.72 0.00 33.60 3.42
98 99 1.908619 TGGAAGTCAATGGCTGAGCTA 59.091 47.619 3.72 0.00 33.60 3.32
99 100 0.694771 TGGAAGTCAATGGCTGAGCT 59.305 50.000 3.72 0.00 33.60 4.09
100 101 1.674962 GATGGAAGTCAATGGCTGAGC 59.325 52.381 0.00 0.00 33.60 4.26
101 102 2.681848 GTGATGGAAGTCAATGGCTGAG 59.318 50.000 0.00 0.00 33.60 3.35
102 103 2.618816 GGTGATGGAAGTCAATGGCTGA 60.619 50.000 0.00 0.00 0.00 4.26
103 104 1.747355 GGTGATGGAAGTCAATGGCTG 59.253 52.381 0.00 0.00 0.00 4.85
104 105 1.341383 GGGTGATGGAAGTCAATGGCT 60.341 52.381 0.00 0.00 0.00 4.75
105 106 1.106285 GGGTGATGGAAGTCAATGGC 58.894 55.000 0.00 0.00 0.00 4.40
106 107 2.025981 TGAGGGTGATGGAAGTCAATGG 60.026 50.000 0.00 0.00 0.00 3.16
107 108 3.012518 GTGAGGGTGATGGAAGTCAATG 58.987 50.000 0.00 0.00 0.00 2.82
108 109 2.644299 TGTGAGGGTGATGGAAGTCAAT 59.356 45.455 0.00 0.00 0.00 2.57
109 110 2.054021 TGTGAGGGTGATGGAAGTCAA 58.946 47.619 0.00 0.00 0.00 3.18
110 111 1.728323 TGTGAGGGTGATGGAAGTCA 58.272 50.000 0.00 0.00 0.00 3.41
111 112 2.739932 CGATGTGAGGGTGATGGAAGTC 60.740 54.545 0.00 0.00 0.00 3.01
112 113 1.208052 CGATGTGAGGGTGATGGAAGT 59.792 52.381 0.00 0.00 0.00 3.01
156 157 2.241430 GTCTAGTTGTGGGGGCCTAAAT 59.759 50.000 0.84 0.00 0.00 1.40
157 158 1.631898 GTCTAGTTGTGGGGGCCTAAA 59.368 52.381 0.84 0.00 0.00 1.85
192 193 3.116531 GGTAACGCCACGACAGCC 61.117 66.667 0.00 0.00 37.17 4.85
208 209 2.103143 CTCTACGAGGCTGCACGG 59.897 66.667 18.83 3.06 0.00 4.94
214 215 1.407258 GAAGACATGCTCTACGAGGCT 59.593 52.381 0.00 0.00 0.00 4.58
224 225 0.674895 GCGACAAGGGAAGACATGCT 60.675 55.000 0.00 0.00 0.00 3.79
228 229 0.179234 TGTTGCGACAAGGGAAGACA 59.821 50.000 3.66 0.00 31.49 3.41
251 253 3.431725 GTACCACAAGGCTGGCGC 61.432 66.667 0.00 0.00 39.06 6.53
253 255 1.000896 ATGGTACCACAAGGCTGGC 60.001 57.895 19.09 0.00 39.06 4.85
255 257 0.394352 GGGATGGTACCACAAGGCTG 60.394 60.000 19.09 0.00 39.06 4.85
256 258 0.844661 TGGGATGGTACCACAAGGCT 60.845 55.000 19.09 0.00 39.06 4.58
260 262 0.998928 ATGCTGGGATGGTACCACAA 59.001 50.000 19.09 0.00 33.63 3.33
276 278 3.716539 TACGAGGCCGCTGTCATGC 62.717 63.158 4.53 0.00 39.95 4.06
279 281 4.129737 GCTACGAGGCCGCTGTCA 62.130 66.667 4.53 0.00 39.95 3.58
309 311 9.840427 ACAAATTAATTAGAAGTTCATCAACCG 57.160 29.630 5.50 0.00 32.22 4.44
369 371 4.700213 CAGGTGTGGTGGAGTTTATAAAGG 59.300 45.833 0.00 0.00 0.00 3.11
382 384 1.681264 GGGACTTTTTCAGGTGTGGTG 59.319 52.381 0.00 0.00 0.00 4.17
383 385 1.411074 GGGGACTTTTTCAGGTGTGGT 60.411 52.381 0.00 0.00 0.00 4.16
398 400 4.083862 GTGACGGAGGCAGGGGAC 62.084 72.222 0.00 0.00 0.00 4.46
403 405 2.047844 CACCAGTGACGGAGGCAG 60.048 66.667 0.00 0.00 0.00 4.85
429 431 1.076995 TCCTCCTCATCCGCGAAGA 60.077 57.895 8.23 0.00 0.00 2.87
434 436 2.725008 CTCGTCCTCCTCATCCGC 59.275 66.667 0.00 0.00 0.00 5.54
445 447 2.545537 AAAACACTTCCTCCTCGTCC 57.454 50.000 0.00 0.00 0.00 4.79
473 475 3.818773 CCAACGCTTCCTCTTTTCCTAAA 59.181 43.478 0.00 0.00 0.00 1.85
475 477 2.370849 ACCAACGCTTCCTCTTTTCCTA 59.629 45.455 0.00 0.00 0.00 2.94
482 484 1.673033 CGAATCACCAACGCTTCCTCT 60.673 52.381 0.00 0.00 0.00 3.69
488 490 2.540145 GGAACGAATCACCAACGCT 58.460 52.632 0.00 0.00 0.00 5.07
501 503 2.736682 GGTCATTGACGGCGGAACG 61.737 63.158 13.24 0.00 44.73 3.95
504 506 1.252215 TAGTGGTCATTGACGGCGGA 61.252 55.000 13.24 0.00 32.65 5.54
506 508 0.806102 CCTAGTGGTCATTGACGGCG 60.806 60.000 4.80 4.80 32.65 6.46
518 520 1.299976 GGAGGTGTTGGCCTAGTGG 59.700 63.158 3.32 0.00 39.34 4.00
522 524 1.122632 TCGTTGGAGGTGTTGGCCTA 61.123 55.000 3.32 0.00 39.34 3.93
542 544 3.771479 AGCTACTCATGTCAATGACCTCA 59.229 43.478 11.24 0.00 37.91 3.86
546 548 6.591834 ACAAACTAGCTACTCATGTCAATGAC 59.408 38.462 6.41 6.41 37.91 3.06
579 581 4.686091 GCATTTCATCTACGTGCATAGCTA 59.314 41.667 0.00 0.00 35.93 3.32
624 626 7.056635 CCCATTGTAACCATAGTCTCATTTCT 58.943 38.462 0.00 0.00 0.00 2.52
625 627 6.828785 ACCCATTGTAACCATAGTCTCATTTC 59.171 38.462 0.00 0.00 0.00 2.17
639 641 7.016153 TCCCTCATATCATACCCATTGTAAC 57.984 40.000 0.00 0.00 31.94 2.50
649 651 5.506483 CGTCCGATCATCCCTCATATCATAC 60.506 48.000 0.00 0.00 0.00 2.39
650 652 4.580580 CGTCCGATCATCCCTCATATCATA 59.419 45.833 0.00 0.00 0.00 2.15
652 654 2.755103 CGTCCGATCATCCCTCATATCA 59.245 50.000 0.00 0.00 0.00 2.15
653 655 2.480416 GCGTCCGATCATCCCTCATATC 60.480 54.545 0.00 0.00 0.00 1.63
654 656 1.478510 GCGTCCGATCATCCCTCATAT 59.521 52.381 0.00 0.00 0.00 1.78
655 657 0.888619 GCGTCCGATCATCCCTCATA 59.111 55.000 0.00 0.00 0.00 2.15
656 658 0.829602 AGCGTCCGATCATCCCTCAT 60.830 55.000 0.00 0.00 0.00 2.90
657 659 1.455773 AGCGTCCGATCATCCCTCA 60.456 57.895 0.00 0.00 0.00 3.86
658 660 1.175983 AGAGCGTCCGATCATCCCTC 61.176 60.000 7.74 0.00 32.23 4.30
659 661 1.152652 AGAGCGTCCGATCATCCCT 60.153 57.895 7.74 0.00 32.23 4.20
661 663 1.287503 GGAGAGCGTCCGATCATCC 59.712 63.158 7.74 7.52 34.84 3.51
685 687 1.738099 GCGGACACATTCAGACGCT 60.738 57.895 0.00 0.00 43.24 5.07
691 693 8.556194 GTTCTTATATATTTGCGGACACATTCA 58.444 33.333 0.00 0.00 0.00 2.57
692 694 8.774586 AGTTCTTATATATTTGCGGACACATTC 58.225 33.333 0.00 0.00 0.00 2.67
694 696 7.931407 TGAGTTCTTATATATTTGCGGACACAT 59.069 33.333 0.00 0.00 0.00 3.21
695 697 7.269316 TGAGTTCTTATATATTTGCGGACACA 58.731 34.615 0.00 0.00 0.00 3.72
696 698 7.652105 TCTGAGTTCTTATATATTTGCGGACAC 59.348 37.037 0.00 0.00 0.00 3.67
697 699 7.722363 TCTGAGTTCTTATATATTTGCGGACA 58.278 34.615 0.00 0.00 0.00 4.02
760 762 9.698309 ATGGTTGATAAATCAGTCGTATCTTAG 57.302 33.333 0.00 0.00 38.19 2.18
764 766 8.142994 ACAATGGTTGATAAATCAGTCGTATC 57.857 34.615 0.00 0.00 38.19 2.24
776 778 4.827692 AGAGCACGTACAATGGTTGATAA 58.172 39.130 0.00 0.00 0.00 1.75
835 840 7.968956 TCGAGATCGATTTTATAGCTATGGTTC 59.031 37.037 16.77 7.03 44.22 3.62
853 858 2.793790 CTCTTTGCTGGATTCGAGATCG 59.206 50.000 0.00 0.00 41.45 3.69
875 881 2.104859 CCACCGCTGAGCTGTCATG 61.105 63.158 1.78 0.00 30.18 3.07
925 931 2.899838 TGCCCGTGTGTGCAGTTC 60.900 61.111 0.00 0.00 32.77 3.01
929 935 4.873810 AAGCTGCCCGTGTGTGCA 62.874 61.111 0.00 0.00 35.86 4.57
930 936 3.542629 GAAAGCTGCCCGTGTGTGC 62.543 63.158 0.00 0.00 0.00 4.57
931 937 2.639286 GAAAGCTGCCCGTGTGTG 59.361 61.111 0.00 0.00 0.00 3.82
932 938 2.594592 GGAAAGCTGCCCGTGTGT 60.595 61.111 0.00 0.00 0.00 3.72
1277 1313 2.593956 GGAGAGGGCGTGGAGGTTT 61.594 63.158 0.00 0.00 0.00 3.27
1298 1334 0.549950 GGGGCTAGGGTTTAGGGTTC 59.450 60.000 0.00 0.00 0.00 3.62
1303 1339 2.357881 GGAAAAGGGGGCTAGGGTTTAG 60.358 54.545 0.00 0.00 0.00 1.85
1309 1345 0.551396 ATTCGGAAAAGGGGGCTAGG 59.449 55.000 0.00 0.00 0.00 3.02
1326 1369 3.923425 ACAGGAAGGTAAAAGAGGGGATT 59.077 43.478 0.00 0.00 0.00 3.01
1509 1552 9.632638 ATGCCAGACTAGTTAATTTTACATCAT 57.367 29.630 0.00 0.00 0.00 2.45
1533 1576 3.066760 GTCCCCCTCTTAAAAATCGCATG 59.933 47.826 0.00 0.00 0.00 4.06
1558 1601 5.715439 ATGAAGTTGAGTAATCCCCATCA 57.285 39.130 0.00 0.00 0.00 3.07
1646 1689 2.481568 CACTGACATGGTACTTGCACAG 59.518 50.000 0.00 15.22 0.00 3.66
1679 1722 6.946229 AAGCTACTTAGTACAACAATGACG 57.054 37.500 0.00 0.00 0.00 4.35
1692 1735 4.575885 TGCACTTGGGTTAAGCTACTTAG 58.424 43.478 4.41 0.00 40.16 2.18
1693 1736 4.627284 TGCACTTGGGTTAAGCTACTTA 57.373 40.909 4.41 0.00 40.16 2.24
1696 1739 4.783764 AATTGCACTTGGGTTAAGCTAC 57.216 40.909 4.41 0.00 40.16 3.58
1718 1761 6.884836 GCAAGGAAGGTATTTTCTCCTCTAAA 59.115 38.462 0.00 0.00 33.09 1.85
1792 1835 8.565896 AACATCTTCATGTAGCTGAACAATTA 57.434 30.769 9.79 0.00 42.89 1.40
1801 1844 5.804639 TGTGGTTAACATCTTCATGTAGCT 58.195 37.500 8.10 0.00 42.89 3.32
2024 2067 2.043652 AGGCATGGGCGCAATTCT 60.044 55.556 10.83 2.35 42.47 2.40
2364 2409 5.104982 ACTGGACACAACAAACATTGGAAAT 60.105 36.000 0.00 0.00 33.63 2.17
2640 2714 2.360165 GCATAATAACTGCAAGCTGGCT 59.640 45.455 15.68 0.00 39.46 4.75
2646 2720 4.627611 AGCACAGCATAATAACTGCAAG 57.372 40.909 0.00 0.00 42.15 4.01
3065 3141 3.515630 AGATACGAGACATGTGTTGCAG 58.484 45.455 1.15 0.00 0.00 4.41
3200 3279 9.367444 AGTACTAGTTGAAGAATATTTTGGTCG 57.633 33.333 0.00 0.00 0.00 4.79
3235 3314 5.590259 ACACAATAGTCCAGATTATTGGTGC 59.410 40.000 20.42 0.00 42.04 5.01
3238 3317 8.964476 AGTAACACAATAGTCCAGATTATTGG 57.036 34.615 20.42 14.11 42.04 3.16
3290 3372 8.267620 ACACATCAAGATTCACGAATGATAAA 57.732 30.769 0.00 0.00 33.85 1.40
3337 3419 4.102524 ACGGGCTAGATTCATGGATTTACA 59.897 41.667 0.00 0.00 0.00 2.41
3370 3452 7.610865 TCATTGAAAATGCTAAACTTAAGGGG 58.389 34.615 7.53 0.00 0.00 4.79
3584 3666 4.950050 ACTGAACAAGGTCTACAACTCTG 58.050 43.478 0.00 0.00 0.00 3.35
3651 3734 2.791383 TCACCTGAAAAATGGCAACG 57.209 45.000 0.00 0.00 42.51 4.10
3887 3999 5.527214 CCTCATCTTCCACATACGCAAATTA 59.473 40.000 0.00 0.00 0.00 1.40
3975 4087 6.486248 TGAAAGTTGAGTTTCTGTTGATTCG 58.514 36.000 11.40 0.00 37.34 3.34
4041 4153 4.014406 CTGGGGAACTTACCATTAACCAC 58.986 47.826 0.00 0.00 35.93 4.16
4045 4157 3.053917 GCTCCTGGGGAACTTACCATTAA 60.054 47.826 0.00 0.00 35.93 1.40
4047 4159 1.285078 GCTCCTGGGGAACTTACCATT 59.715 52.381 0.00 0.00 35.93 3.16
4048 4160 0.919710 GCTCCTGGGGAACTTACCAT 59.080 55.000 0.00 0.00 35.93 3.55
4095 4207 9.982651 ACGACAATTATTGCTTCTATACAGTAT 57.017 29.630 4.68 0.00 0.00 2.12
4325 4525 4.039092 CCTCCCAGTGGTGCCCAG 62.039 72.222 8.74 0.00 32.34 4.45
4435 4672 6.925165 CCAACAAATTAAGAATCTGTGCAACT 59.075 34.615 0.00 0.00 38.04 3.16
4472 4709 4.272748 GTGAACCACTACTTTCCACTTGTC 59.727 45.833 0.00 0.00 0.00 3.18
4538 4775 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
4539 4776 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
4540 4777 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
4541 4778 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
4542 4779 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
4543 4780 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
4544 4781 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
4545 4782 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
4546 4783 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
4547 4784 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
4560 4797 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
4561 4798 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
4562 4799 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
4563 4800 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
4564 4801 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
4565 4802 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
4566 4803 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
4567 4804 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
4568 4805 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
4569 4806 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
4570 4807 5.984926 TGATTTACTCGTCGTGGTTTTAGTT 59.015 36.000 0.00 0.00 0.00 2.24
4571 4808 5.531634 TGATTTACTCGTCGTGGTTTTAGT 58.468 37.500 0.00 0.00 0.00 2.24
4572 4809 5.860182 TCTGATTTACTCGTCGTGGTTTTAG 59.140 40.000 0.00 0.00 0.00 1.85
4573 4810 5.771469 TCTGATTTACTCGTCGTGGTTTTA 58.229 37.500 0.00 0.00 0.00 1.52
4574 4811 4.624015 TCTGATTTACTCGTCGTGGTTTT 58.376 39.130 0.00 0.00 0.00 2.43
4575 4812 4.247267 TCTGATTTACTCGTCGTGGTTT 57.753 40.909 0.00 0.00 0.00 3.27
4576 4813 3.928727 TCTGATTTACTCGTCGTGGTT 57.071 42.857 0.00 0.00 0.00 3.67
4577 4814 3.572584 GTTCTGATTTACTCGTCGTGGT 58.427 45.455 0.00 0.00 0.00 4.16
4578 4815 2.592897 CGTTCTGATTTACTCGTCGTGG 59.407 50.000 0.00 0.00 0.00 4.94
4579 4816 2.592897 CCGTTCTGATTTACTCGTCGTG 59.407 50.000 0.00 0.00 0.00 4.35
4580 4817 2.485426 TCCGTTCTGATTTACTCGTCGT 59.515 45.455 0.00 0.00 0.00 4.34
4581 4818 3.099362 CTCCGTTCTGATTTACTCGTCG 58.901 50.000 0.00 0.00 0.00 5.12
4582 4819 3.436496 CCTCCGTTCTGATTTACTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
4583 4820 2.165845 CCCTCCGTTCTGATTTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
4584 4821 2.426024 TCCCTCCGTTCTGATTTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
4585 4822 3.447944 ACTCCCTCCGTTCTGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
4586 4823 3.442076 ACTCCCTCCGTTCTGATTTACT 58.558 45.455 0.00 0.00 0.00 2.24
4587 4824 3.889520 ACTCCCTCCGTTCTGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
4588 4825 3.703052 GGTACTCCCTCCGTTCTGATTTA 59.297 47.826 0.00 0.00 0.00 1.40
4589 4826 2.500504 GGTACTCCCTCCGTTCTGATTT 59.499 50.000 0.00 0.00 0.00 2.17
4590 4827 2.108970 GGTACTCCCTCCGTTCTGATT 58.891 52.381 0.00 0.00 0.00 2.57
4591 4828 1.006758 TGGTACTCCCTCCGTTCTGAT 59.993 52.381 0.00 0.00 0.00 2.90
4592 4829 0.406750 TGGTACTCCCTCCGTTCTGA 59.593 55.000 0.00 0.00 0.00 3.27
4593 4830 1.486211 ATGGTACTCCCTCCGTTCTG 58.514 55.000 0.00 0.00 0.00 3.02
4594 4831 2.244252 ACTATGGTACTCCCTCCGTTCT 59.756 50.000 0.00 0.00 0.00 3.01
4595 4832 2.664015 ACTATGGTACTCCCTCCGTTC 58.336 52.381 0.00 0.00 0.00 3.95
4596 4833 2.842645 ACTATGGTACTCCCTCCGTT 57.157 50.000 0.00 0.00 0.00 4.44
4597 4834 2.782341 ACTACTATGGTACTCCCTCCGT 59.218 50.000 0.00 0.00 0.00 4.69
4598 4835 3.505480 ACTACTATGGTACTCCCTCCG 57.495 52.381 0.00 0.00 0.00 4.63
4599 4836 6.436847 GGAATTACTACTATGGTACTCCCTCC 59.563 46.154 0.00 0.00 0.00 4.30
4600 4837 6.436847 GGGAATTACTACTATGGTACTCCCTC 59.563 46.154 9.71 0.00 37.93 4.30
4601 4838 6.321321 GGGAATTACTACTATGGTACTCCCT 58.679 44.000 9.71 0.00 37.93 4.20
4602 4839 5.483231 GGGGAATTACTACTATGGTACTCCC 59.517 48.000 8.93 8.93 39.01 4.30
4603 4840 5.483231 GGGGGAATTACTACTATGGTACTCC 59.517 48.000 0.00 0.00 0.00 3.85
4604 4841 6.080009 TGGGGGAATTACTACTATGGTACTC 58.920 44.000 0.00 0.00 0.00 2.59
4605 4842 6.046917 TGGGGGAATTACTACTATGGTACT 57.953 41.667 0.00 0.00 0.00 2.73
4771 5009 4.443457 GCAGAATAGGGTCTATTGTCTGCA 60.443 45.833 23.18 0.00 44.93 4.41
4856 5353 2.378547 TCCCTGCCAATAGGTTTCAACT 59.621 45.455 0.00 0.00 36.02 3.16
4883 5380 2.954989 TCAACAATGGCAGCTGTTTGTA 59.045 40.909 23.06 12.12 33.51 2.41
5013 5512 4.085055 CGACAATCACACAGTGTGTAGAAC 60.085 45.833 27.76 18.40 45.65 3.01
5027 5526 7.044706 GCAAAAATAGTAATCAGCGACAATCAC 60.045 37.037 0.00 0.00 0.00 3.06
5028 5527 6.966632 GCAAAAATAGTAATCAGCGACAATCA 59.033 34.615 0.00 0.00 0.00 2.57
5029 5528 6.414987 GGCAAAAATAGTAATCAGCGACAATC 59.585 38.462 0.00 0.00 0.00 2.67
5030 5529 6.095440 AGGCAAAAATAGTAATCAGCGACAAT 59.905 34.615 0.00 0.00 0.00 2.71
5031 5530 5.414454 AGGCAAAAATAGTAATCAGCGACAA 59.586 36.000 0.00 0.00 0.00 3.18
5033 5532 5.266242 CAGGCAAAAATAGTAATCAGCGAC 58.734 41.667 0.00 0.00 0.00 5.19
5034 5533 4.201910 GCAGGCAAAAATAGTAATCAGCGA 60.202 41.667 0.00 0.00 0.00 4.93
5036 5535 4.098501 AGGCAGGCAAAAATAGTAATCAGC 59.901 41.667 0.00 0.00 0.00 4.26
5313 5812 2.507407 TCATCCAGGGGCTTGTTTAC 57.493 50.000 0.00 0.00 0.00 2.01
5364 5863 1.471287 CCAGTGCCACATCATGTCTTG 59.529 52.381 0.00 0.00 0.00 3.02
5388 5887 1.986413 CCTCCCCTTGGTGAGACAG 59.014 63.158 0.68 0.00 0.00 3.51
5392 5891 1.492133 TTCTGCCTCCCCTTGGTGAG 61.492 60.000 0.00 0.00 0.00 3.51
5436 5948 1.748493 TGCTCCTTTCACGCTTTGTTT 59.252 42.857 0.00 0.00 0.00 2.83
5444 5956 1.784062 CGCTTCTGCTCCTTTCACG 59.216 57.895 0.00 0.00 36.97 4.35
5446 5958 0.534877 TTGCGCTTCTGCTCCTTTCA 60.535 50.000 9.73 0.00 36.97 2.69
5503 6017 0.806241 GGCGCTCGTTTTTAATCCCA 59.194 50.000 7.64 0.00 0.00 4.37
5519 6033 2.146073 CTGGCCCAAGTTTGAAGGCG 62.146 60.000 0.00 0.00 46.75 5.52
5538 6052 2.552743 AGCAAAAAGGAGCGGTAGTTTC 59.447 45.455 0.00 0.00 35.48 2.78
5612 6129 5.047188 AGGTAAAACAAATTTCCAACAGCG 58.953 37.500 0.00 0.00 32.27 5.18
5647 6164 3.819564 TGAATATGACCCTCCGAAGTG 57.180 47.619 0.00 0.00 0.00 3.16
5654 6171 9.360093 CGTAAAAGATAGATGAATATGACCCTC 57.640 37.037 0.00 0.00 0.00 4.30
5670 6187 8.553696 GTCCACAAAGAAAACTCGTAAAAGATA 58.446 33.333 0.00 0.00 0.00 1.98
5686 6203 1.337823 GCGCTAAGAGGTCCACAAAGA 60.338 52.381 0.00 0.00 0.00 2.52
5692 6209 4.143333 GCCGCGCTAAGAGGTCCA 62.143 66.667 5.56 0.00 42.28 4.02
5701 6218 0.959553 AATAGCTCTTAGCCGCGCTA 59.040 50.000 5.56 2.98 43.77 4.26
5717 6234 2.509786 GGTCGGCGCGTTGGAATA 60.510 61.111 8.43 0.00 0.00 1.75
5772 6291 2.951458 CGTTGGGCCGACTTTTCC 59.049 61.111 21.44 0.00 0.00 3.13
5830 6360 2.290896 TGAGGCTCAAAAATGGATCGGT 60.291 45.455 16.28 0.00 0.00 4.69
5923 6495 0.253630 AGGAAATGGTGGAGGGGCTA 60.254 55.000 0.00 0.00 0.00 3.93
5926 6498 0.033109 GGAAGGAAATGGTGGAGGGG 60.033 60.000 0.00 0.00 0.00 4.79
5927 6499 0.704076 TGGAAGGAAATGGTGGAGGG 59.296 55.000 0.00 0.00 0.00 4.30
6043 6652 3.605749 AAGGTGGCGGTCGTGATGG 62.606 63.158 0.00 0.00 0.00 3.51
6105 6718 0.957888 AGCTTCTTCTTCGGCTTGGC 60.958 55.000 0.00 0.00 0.00 4.52
6264 6877 1.630126 ATCAGCGCCTCCCTCATTGT 61.630 55.000 2.29 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.