Multiple sequence alignment - TraesCS1D01G084900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G084900 chr1D 100.000 3223 0 0 1 3223 69181756 69178534 0.000000e+00 5952.0
1 TraesCS1D01G084900 chr1D 79.678 497 69 24 21 500 69192733 69192252 2.400000e-86 329.0
2 TraesCS1D01G084900 chr1D 97.059 34 1 0 2841 2874 69178862 69178829 1.250000e-04 58.4
3 TraesCS1D01G084900 chr1D 97.059 34 1 0 2895 2928 69178916 69178883 1.250000e-04 58.4
4 TraesCS1D01G084900 chr1B 93.883 2436 116 24 1 2419 111027759 111025340 0.000000e+00 3642.0
5 TraesCS1D01G084900 chr1A 93.586 1824 81 19 622 2419 68375692 68373879 0.000000e+00 2687.0
6 TraesCS1D01G084900 chr1A 93.810 420 25 1 1 420 68377550 68377132 5.870000e-177 630.0
7 TraesCS1D01G084900 chr1A 94.717 265 10 3 2961 3223 68373621 68373359 2.990000e-110 409.0
8 TraesCS1D01G084900 chr1A 88.827 179 10 3 457 626 68377152 68376975 9.060000e-51 211.0
9 TraesCS1D01G084900 chr1A 90.566 53 2 3 2439 2488 558720233 558720285 2.080000e-07 67.6
10 TraesCS1D01G084900 chr1A 91.304 46 3 1 2444 2488 524134943 524134898 9.650000e-06 62.1
11 TraesCS1D01G084900 chr5A 80.583 309 26 12 2531 2808 248527942 248528247 1.170000e-49 207.0
12 TraesCS1D01G084900 chr5A 85.635 181 17 5 2537 2709 394570035 394569856 7.100000e-42 182.0
13 TraesCS1D01G084900 chr2A 79.937 319 27 14 2528 2814 587278154 587278467 1.960000e-47 200.0
14 TraesCS1D01G084900 chr2A 86.170 188 18 4 2530 2709 564103992 564103805 2.540000e-46 196.0
15 TraesCS1D01G084900 chr2A 95.349 43 0 2 2439 2479 324635016 324635058 2.080000e-07 67.6
16 TraesCS1D01G084900 chr2A 93.478 46 2 1 2444 2488 589799686 589799641 2.080000e-07 67.6
17 TraesCS1D01G084900 chr6A 79.730 296 40 12 2530 2808 383967545 383967837 2.540000e-46 196.0
18 TraesCS1D01G084900 chr6A 85.484 186 19 3 2532 2709 397209216 397209401 1.530000e-43 187.0
19 TraesCS1D01G084900 chr4B 85.561 187 19 3 2530 2708 306242332 306242146 4.240000e-44 189.0
20 TraesCS1D01G084900 chr6B 85.027 187 20 3 2531 2709 478872969 478872783 1.970000e-42 183.0
21 TraesCS1D01G084900 chr7A 84.783 184 20 3 2531 2706 115028061 115028244 9.190000e-41 178.0
22 TraesCS1D01G084900 chr7A 93.478 46 2 1 2444 2488 116512222 116512177 2.080000e-07 67.6
23 TraesCS1D01G084900 chr7A 93.478 46 2 1 2444 2488 164392938 164392893 2.080000e-07 67.6
24 TraesCS1D01G084900 chr7A 93.478 46 2 1 2444 2488 537370696 537370651 2.080000e-07 67.6
25 TraesCS1D01G084900 chr3A 93.478 46 2 1 2444 2488 520972328 520972373 2.080000e-07 67.6
26 TraesCS1D01G084900 chr2D 93.478 46 2 1 2444 2488 383302753 383302708 2.080000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G084900 chr1D 69178534 69181756 3222 True 2022.933333 5952 98.039333 1 3223 3 chr1D.!!$R2 3222
1 TraesCS1D01G084900 chr1B 111025340 111027759 2419 True 3642.000000 3642 93.883000 1 2419 1 chr1B.!!$R1 2418
2 TraesCS1D01G084900 chr1A 68373359 68377550 4191 True 984.250000 2687 92.735000 1 3223 4 chr1A.!!$R2 3222

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.249741 CGTATTCGGTGGGGGTCATC 60.250 60.0 0.0 0.0 0.0 2.92 F
1101 2409 0.107456 CACTCCACACAACCAGAGCT 59.893 55.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 2607 0.389037 TCGACAAGCAGTGCTAGCAG 60.389 55.0 20.03 8.82 38.25 4.24 R
2525 3862 0.031585 GAACCAAACGGGCCTTTGAC 59.968 55.0 22.16 13.07 42.05 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
255 256 2.499685 GTGAGGGCGAGGCGTATT 59.500 61.111 0.00 0.00 0.00 1.89
269 270 0.249741 CGTATTCGGTGGGGGTCATC 60.250 60.000 0.00 0.00 0.00 2.92
399 400 2.096496 GTCGATAAGAAGTTCGTCGGGA 59.904 50.000 20.33 6.68 36.74 5.14
446 452 2.325082 CGAAAGGCTTGGGTGGTCG 61.325 63.158 0.00 0.83 0.00 4.79
578 593 3.866582 GCGATGGGGAGTGGGAGG 61.867 72.222 0.00 0.00 0.00 4.30
674 1981 0.381801 GGCATTGTGATTACGGGCTG 59.618 55.000 0.00 0.00 0.00 4.85
694 2001 1.209747 GGGTAAGAGAAATGGACGGCT 59.790 52.381 0.00 0.00 0.00 5.52
729 2037 1.410004 TGTGGGCTCTAGAATACGGG 58.590 55.000 0.00 0.00 0.00 5.28
735 2043 2.158943 GGCTCTAGAATACGGGCTTGTT 60.159 50.000 0.00 0.00 0.00 2.83
750 2058 2.438411 CTTGTTGGCCCGTTTACCATA 58.562 47.619 0.00 0.00 35.42 2.74
752 2060 2.872732 TGTTGGCCCGTTTACCATAAA 58.127 42.857 0.00 0.00 35.42 1.40
911 2219 1.226267 GAGACAGCTGCGAGACTCG 60.226 63.158 20.56 20.56 43.89 4.18
921 2229 1.660575 CGAGACTCGTGCCACGTTT 60.661 57.895 17.83 5.03 43.14 3.60
1058 2366 3.494398 CCGTTTCTCCTTCTTCTTCACCA 60.494 47.826 0.00 0.00 0.00 4.17
1088 2396 1.830587 AATCAGCTGCGTCCACTCCA 61.831 55.000 9.47 0.00 0.00 3.86
1092 2400 2.421314 CTGCGTCCACTCCACACA 59.579 61.111 0.00 0.00 0.00 3.72
1101 2409 0.107456 CACTCCACACAACCAGAGCT 59.893 55.000 0.00 0.00 0.00 4.09
1296 2607 3.565063 TCCAGGTAAAGCGGTTTTAACAC 59.435 43.478 18.81 9.89 40.69 3.32
1298 2609 4.533222 CAGGTAAAGCGGTTTTAACACTG 58.467 43.478 18.81 14.81 40.69 3.66
1323 2636 2.146342 CACTGCTTGTCGATGGTCTTT 58.854 47.619 0.00 0.00 0.00 2.52
1338 2651 1.126296 GTCTTTCGTTAAGCTGCGGTC 59.874 52.381 0.00 0.00 33.66 4.79
1340 2653 1.126846 CTTTCGTTAAGCTGCGGTCTG 59.873 52.381 0.00 0.00 0.00 3.51
1356 2669 4.269603 GCGGTCTGATATGATATGCATGTC 59.730 45.833 15.93 15.93 43.24 3.06
1535 2848 2.100631 CGACATCAAGTCCCGCACC 61.101 63.158 0.00 0.00 44.66 5.01
1615 2928 3.775654 GGTGGAGGAGGTGGCGAG 61.776 72.222 0.00 0.00 0.00 5.03
2018 3331 2.045926 GAGGTGCCCATGAAGCGT 60.046 61.111 0.00 0.00 0.00 5.07
2097 3410 1.457643 TCCTACATCTCCGGCCAGG 60.458 63.158 2.24 5.27 42.97 4.45
2100 3413 1.001120 TACATCTCCGGCCAGGTCA 59.999 57.895 2.24 0.00 41.99 4.02
2152 3468 4.397417 CACCTTGTTGATTCTTCCCATCTC 59.603 45.833 0.00 0.00 0.00 2.75
2182 3498 6.420588 CATGAAATTCATTGCGTTTTTGTGT 58.579 32.000 5.63 0.00 34.28 3.72
2183 3499 5.793675 TGAAATTCATTGCGTTTTTGTGTG 58.206 33.333 0.00 0.00 0.00 3.82
2307 3631 4.662961 TGTGGCGTGCCGAGTCTG 62.663 66.667 6.37 0.00 39.42 3.51
2310 3634 3.755628 GGCGTGCCGAGTCTGGTA 61.756 66.667 0.00 0.00 0.00 3.25
2319 3652 3.452264 TGCCGAGTCTGGTAGTAGTAGTA 59.548 47.826 3.51 0.00 0.00 1.82
2394 3727 9.389570 GTCAAGCGTTAAACAAATAATGTAACT 57.610 29.630 0.00 0.00 42.99 2.24
2419 3756 5.944049 CATGCAATGCAAGTTGAACTATC 57.056 39.130 13.45 0.00 43.62 2.08
2420 3757 5.404096 CATGCAATGCAAGTTGAACTATCA 58.596 37.500 13.45 0.00 43.62 2.15
2421 3758 5.450592 TGCAATGCAAGTTGAACTATCAA 57.549 34.783 5.01 0.00 38.27 2.57
2422 3759 5.840715 TGCAATGCAAGTTGAACTATCAAA 58.159 33.333 5.01 0.00 40.57 2.69
2423 3760 5.921976 TGCAATGCAAGTTGAACTATCAAAG 59.078 36.000 5.01 0.00 40.57 2.77
2424 3761 5.346822 GCAATGCAAGTTGAACTATCAAAGG 59.653 40.000 7.16 0.00 46.66 3.11
2425 3762 4.503741 TGCAAGTTGAACTATCAAAGGC 57.496 40.909 7.16 0.00 46.66 4.35
2428 3765 2.711542 AGTTGAACTATCAAAGGCCCG 58.288 47.619 0.00 0.00 46.66 6.13
2429 3766 2.039879 AGTTGAACTATCAAAGGCCCGT 59.960 45.455 0.00 0.00 46.66 5.28
2430 3767 2.817844 GTTGAACTATCAAAGGCCCGTT 59.182 45.455 0.00 0.00 46.66 4.44
2431 3768 3.149005 TGAACTATCAAAGGCCCGTTT 57.851 42.857 0.00 0.00 30.99 3.60
2432 3769 3.492337 TGAACTATCAAAGGCCCGTTTT 58.508 40.909 0.00 0.00 30.99 2.43
2433 3770 3.254657 TGAACTATCAAAGGCCCGTTTTG 59.745 43.478 9.18 9.18 36.98 2.44
2434 3771 2.871453 ACTATCAAAGGCCCGTTTTGT 58.129 42.857 13.83 6.21 36.97 2.83
2435 3772 2.817844 ACTATCAAAGGCCCGTTTTGTC 59.182 45.455 13.83 0.00 36.97 3.18
2436 3773 1.698506 ATCAAAGGCCCGTTTTGTCA 58.301 45.000 13.83 0.00 36.97 3.58
2437 3774 1.028905 TCAAAGGCCCGTTTTGTCAG 58.971 50.000 13.83 0.00 36.97 3.51
2438 3775 1.028905 CAAAGGCCCGTTTTGTCAGA 58.971 50.000 0.00 0.00 32.30 3.27
2439 3776 1.001378 CAAAGGCCCGTTTTGTCAGAG 60.001 52.381 0.00 0.00 32.30 3.35
2442 3779 2.626780 GCCCGTTTTGTCAGAGGCC 61.627 63.158 0.00 0.00 34.23 5.19
2443 3780 2.325082 CCCGTTTTGTCAGAGGCCG 61.325 63.158 0.00 0.00 0.00 6.13
2444 3781 1.597027 CCGTTTTGTCAGAGGCCGT 60.597 57.895 0.00 0.00 0.00 5.68
2446 3783 0.661020 CGTTTTGTCAGAGGCCGTTT 59.339 50.000 0.00 0.00 0.00 3.60
2447 3784 1.596954 CGTTTTGTCAGAGGCCGTTTG 60.597 52.381 0.00 0.00 0.00 2.93
2448 3785 1.028905 TTTTGTCAGAGGCCGTTTGG 58.971 50.000 0.00 0.00 38.77 3.28
2451 3788 0.534203 TGTCAGAGGCCGTTTGGTTC 60.534 55.000 0.00 0.00 37.67 3.62
2452 3789 0.534203 GTCAGAGGCCGTTTGGTTCA 60.534 55.000 0.00 0.00 37.67 3.18
2453 3790 0.250295 TCAGAGGCCGTTTGGTTCAG 60.250 55.000 0.00 0.00 37.67 3.02
2454 3791 0.535102 CAGAGGCCGTTTGGTTCAGT 60.535 55.000 0.00 0.00 37.67 3.41
2455 3792 0.182775 AGAGGCCGTTTGGTTCAGTT 59.817 50.000 0.00 0.00 37.67 3.16
2456 3793 1.029681 GAGGCCGTTTGGTTCAGTTT 58.970 50.000 0.00 0.00 37.67 2.66
2457 3794 1.407618 GAGGCCGTTTGGTTCAGTTTT 59.592 47.619 0.00 0.00 37.67 2.43
2458 3795 1.828595 AGGCCGTTTGGTTCAGTTTTT 59.171 42.857 0.00 0.00 37.67 1.94
2459 3796 3.025262 AGGCCGTTTGGTTCAGTTTTTA 58.975 40.909 0.00 0.00 37.67 1.52
2460 3797 3.639561 AGGCCGTTTGGTTCAGTTTTTAT 59.360 39.130 0.00 0.00 37.67 1.40
2461 3798 3.985279 GGCCGTTTGGTTCAGTTTTTATC 59.015 43.478 0.00 0.00 37.67 1.75
2462 3799 3.666797 GCCGTTTGGTTCAGTTTTTATCG 59.333 43.478 0.00 0.00 37.67 2.92
2463 3800 4.555116 GCCGTTTGGTTCAGTTTTTATCGA 60.555 41.667 0.00 0.00 37.67 3.59
2464 3801 4.907582 CCGTTTGGTTCAGTTTTTATCGAC 59.092 41.667 0.00 0.00 0.00 4.20
2465 3802 4.605594 CGTTTGGTTCAGTTTTTATCGACG 59.394 41.667 0.00 0.00 0.00 5.12
2466 3803 4.735662 TTGGTTCAGTTTTTATCGACGG 57.264 40.909 0.00 0.00 0.00 4.79
2467 3804 3.992643 TGGTTCAGTTTTTATCGACGGA 58.007 40.909 0.00 0.00 0.00 4.69
2468 3805 4.571919 TGGTTCAGTTTTTATCGACGGAT 58.428 39.130 0.00 0.00 36.65 4.18
2469 3806 4.998672 TGGTTCAGTTTTTATCGACGGATT 59.001 37.500 0.00 0.00 34.00 3.01
2470 3807 5.121142 TGGTTCAGTTTTTATCGACGGATTC 59.879 40.000 0.00 0.00 34.00 2.52
2471 3808 5.446875 GGTTCAGTTTTTATCGACGGATTCC 60.447 44.000 0.00 0.00 34.00 3.01
2495 3832 3.744559 GGCTGCCGAACAACAGAA 58.255 55.556 1.35 0.00 35.90 3.02
2496 3833 2.257353 GGCTGCCGAACAACAGAAT 58.743 52.632 1.35 0.00 35.90 2.40
2497 3834 0.169009 GGCTGCCGAACAACAGAATC 59.831 55.000 1.35 0.00 35.90 2.52
2498 3835 1.160137 GCTGCCGAACAACAGAATCT 58.840 50.000 0.00 0.00 35.90 2.40
2499 3836 1.135859 GCTGCCGAACAACAGAATCTG 60.136 52.381 8.98 8.98 35.90 2.90
2500 3837 1.466167 CTGCCGAACAACAGAATCTGG 59.534 52.381 15.38 0.00 35.90 3.86
2501 3838 1.071542 TGCCGAACAACAGAATCTGGA 59.928 47.619 15.38 0.00 35.51 3.86
2502 3839 1.734465 GCCGAACAACAGAATCTGGAG 59.266 52.381 15.38 8.76 35.51 3.86
2503 3840 2.612972 GCCGAACAACAGAATCTGGAGA 60.613 50.000 15.38 0.00 35.51 3.71
2504 3841 3.664107 CCGAACAACAGAATCTGGAGAA 58.336 45.455 15.38 0.00 35.51 2.87
2505 3842 4.256920 CCGAACAACAGAATCTGGAGAAT 58.743 43.478 15.38 1.87 35.51 2.40
2506 3843 4.331168 CCGAACAACAGAATCTGGAGAATC 59.669 45.833 15.38 9.12 35.51 2.52
2523 3860 5.162000 AGAATCCGATTTGAGAAATTCGC 57.838 39.130 0.00 0.00 0.00 4.70
2524 3861 4.878397 AGAATCCGATTTGAGAAATTCGCT 59.122 37.500 0.00 0.00 0.00 4.93
2525 3862 4.542662 ATCCGATTTGAGAAATTCGCTG 57.457 40.909 0.00 0.00 0.00 5.18
2526 3863 3.334691 TCCGATTTGAGAAATTCGCTGT 58.665 40.909 0.00 0.00 0.00 4.40
2527 3864 3.370978 TCCGATTTGAGAAATTCGCTGTC 59.629 43.478 0.00 0.00 0.00 3.51
2528 3865 3.125146 CCGATTTGAGAAATTCGCTGTCA 59.875 43.478 0.00 0.00 0.00 3.58
2529 3866 4.378356 CCGATTTGAGAAATTCGCTGTCAA 60.378 41.667 0.00 0.00 0.00 3.18
2530 3867 5.146460 CGATTTGAGAAATTCGCTGTCAAA 58.854 37.500 9.51 9.51 40.42 2.69
2531 3868 5.282310 CGATTTGAGAAATTCGCTGTCAAAG 59.718 40.000 11.78 0.13 39.72 2.77
2532 3869 4.488126 TTGAGAAATTCGCTGTCAAAGG 57.512 40.909 0.00 0.00 0.00 3.11
2533 3870 2.226437 TGAGAAATTCGCTGTCAAAGGC 59.774 45.455 0.00 0.00 0.00 4.35
2534 3871 1.541588 AGAAATTCGCTGTCAAAGGCC 59.458 47.619 0.00 0.00 0.00 5.19
2535 3872 0.603065 AAATTCGCTGTCAAAGGCCC 59.397 50.000 0.00 0.00 0.00 5.80
2536 3873 1.586154 AATTCGCTGTCAAAGGCCCG 61.586 55.000 0.00 0.00 0.00 6.13
2537 3874 2.748058 ATTCGCTGTCAAAGGCCCGT 62.748 55.000 0.00 0.00 0.00 5.28
2538 3875 2.951475 TTCGCTGTCAAAGGCCCGTT 62.951 55.000 0.00 0.00 0.00 4.44
2539 3876 2.551912 CGCTGTCAAAGGCCCGTTT 61.552 57.895 0.00 0.00 0.00 3.60
2540 3877 1.007387 GCTGTCAAAGGCCCGTTTG 60.007 57.895 10.50 10.50 38.55 2.93
2541 3878 1.659794 CTGTCAAAGGCCCGTTTGG 59.340 57.895 15.37 0.00 37.89 3.28
2542 3879 1.076632 TGTCAAAGGCCCGTTTGGT 60.077 52.632 15.37 0.00 37.89 3.67
2543 3880 0.684805 TGTCAAAGGCCCGTTTGGTT 60.685 50.000 15.37 0.00 37.89 3.67
2544 3881 0.031585 GTCAAAGGCCCGTTTGGTTC 59.968 55.000 15.37 5.48 37.89 3.62
2545 3882 1.007849 CAAAGGCCCGTTTGGTTCG 60.008 57.895 9.15 0.00 34.34 3.95
2546 3883 1.152922 AAAGGCCCGTTTGGTTCGA 60.153 52.632 0.00 0.00 36.04 3.71
2547 3884 0.538746 AAAGGCCCGTTTGGTTCGAT 60.539 50.000 0.00 0.00 36.04 3.59
2548 3885 0.538746 AAGGCCCGTTTGGTTCGATT 60.539 50.000 0.00 0.00 36.04 3.34
2549 3886 0.538746 AGGCCCGTTTGGTTCGATTT 60.539 50.000 0.00 0.00 36.04 2.17
2550 3887 0.315886 GGCCCGTTTGGTTCGATTTT 59.684 50.000 0.00 0.00 36.04 1.82
2551 3888 1.269883 GGCCCGTTTGGTTCGATTTTT 60.270 47.619 0.00 0.00 36.04 1.94
2552 3889 2.030096 GGCCCGTTTGGTTCGATTTTTA 60.030 45.455 0.00 0.00 36.04 1.52
2553 3890 3.367600 GGCCCGTTTGGTTCGATTTTTAT 60.368 43.478 0.00 0.00 36.04 1.40
2554 3891 3.855379 GCCCGTTTGGTTCGATTTTTATC 59.145 43.478 0.00 0.00 36.04 1.75
2555 3892 4.092816 CCCGTTTGGTTCGATTTTTATCG 58.907 43.478 1.32 1.32 44.73 2.92
2556 3893 7.591972 GCCCGTTTGGTTCGATTTTTATCGA 62.592 44.000 6.17 6.17 42.69 3.59
2565 3902 4.684877 TCGATTTTTATCGACGGATTCCA 58.315 39.130 6.17 0.00 46.64 3.53
2566 3903 4.505191 TCGATTTTTATCGACGGATTCCAC 59.495 41.667 6.17 0.00 46.64 4.02
2567 3904 4.506654 CGATTTTTATCGACGGATTCCACT 59.493 41.667 3.09 0.00 46.12 4.00
2568 3905 5.556382 CGATTTTTATCGACGGATTCCACTG 60.556 44.000 3.09 0.00 46.12 3.66
2569 3906 2.218953 TTATCGACGGATTCCACTGC 57.781 50.000 3.09 0.00 34.00 4.40
2570 3907 0.387929 TATCGACGGATTCCACTGCC 59.612 55.000 3.09 0.00 34.00 4.85
2574 3911 3.499737 CGGATTCCACTGCCGCAC 61.500 66.667 3.09 0.00 38.46 5.34
2575 3912 2.359850 GGATTCCACTGCCGCACA 60.360 61.111 0.00 0.00 0.00 4.57
2584 3921 2.348620 TGCCGCACAGCAGAATCT 59.651 55.556 0.00 0.00 38.00 2.40
2585 3922 2.036571 TGCCGCACAGCAGAATCTG 61.037 57.895 5.78 5.78 38.00 2.90
2586 3923 1.742880 GCCGCACAGCAGAATCTGA 60.743 57.895 15.38 0.00 37.51 3.27
2587 3924 1.300971 GCCGCACAGCAGAATCTGAA 61.301 55.000 15.38 0.00 37.51 3.02
2588 3925 1.376543 CCGCACAGCAGAATCTGAAT 58.623 50.000 15.38 0.00 37.51 2.57
2589 3926 1.063616 CCGCACAGCAGAATCTGAATG 59.936 52.381 15.38 13.62 37.51 2.67
2590 3927 1.063616 CGCACAGCAGAATCTGAATGG 59.936 52.381 15.38 7.11 37.51 3.16
2591 3928 1.202268 GCACAGCAGAATCTGAATGGC 60.202 52.381 15.38 12.37 37.51 4.40
2592 3929 2.089201 CACAGCAGAATCTGAATGGCA 58.911 47.619 15.38 0.00 37.51 4.92
2593 3930 2.490509 CACAGCAGAATCTGAATGGCAA 59.509 45.455 15.38 0.00 37.51 4.52
2594 3931 3.057104 CACAGCAGAATCTGAATGGCAAA 60.057 43.478 15.38 0.00 37.51 3.68
2595 3932 3.057033 ACAGCAGAATCTGAATGGCAAAC 60.057 43.478 15.38 0.00 37.51 2.93
2596 3933 2.494870 AGCAGAATCTGAATGGCAAACC 59.505 45.455 15.38 0.00 32.44 3.27
2597 3934 2.417787 GCAGAATCTGAATGGCAAACCC 60.418 50.000 15.38 0.00 32.44 4.11
2598 3935 2.827322 CAGAATCTGAATGGCAAACCCA 59.173 45.455 3.77 0.00 40.14 4.51
2599 3936 3.119245 CAGAATCTGAATGGCAAACCCAG 60.119 47.826 3.77 0.00 39.53 4.45
2600 3937 6.698999 CAGAATCTGAATGGCAAACCCAGC 62.699 50.000 3.77 0.00 39.53 4.85
2605 3942 4.950200 TGGCAAACCCAGCAGAAT 57.050 50.000 0.00 0.00 39.18 2.40
2606 3943 2.657297 TGGCAAACCCAGCAGAATC 58.343 52.632 0.00 0.00 39.18 2.52
2607 3944 0.112995 TGGCAAACCCAGCAGAATCT 59.887 50.000 0.00 0.00 39.18 2.40
2608 3945 0.529378 GGCAAACCCAGCAGAATCTG 59.471 55.000 5.78 5.78 34.12 2.90
2609 3946 1.538047 GCAAACCCAGCAGAATCTGA 58.462 50.000 15.38 0.00 36.19 3.27
2610 3947 2.097825 GCAAACCCAGCAGAATCTGAT 58.902 47.619 15.38 4.38 36.19 2.90
2611 3948 2.494870 GCAAACCCAGCAGAATCTGATT 59.505 45.455 15.38 1.81 36.19 2.57
2612 3949 3.428589 GCAAACCCAGCAGAATCTGATTC 60.429 47.826 20.14 20.14 39.56 2.52
2613 3950 2.725221 ACCCAGCAGAATCTGATTCC 57.275 50.000 23.12 11.51 40.13 3.01
2614 3951 1.918262 ACCCAGCAGAATCTGATTCCA 59.082 47.619 23.12 0.00 40.13 3.53
2615 3952 2.092538 ACCCAGCAGAATCTGATTCCAG 60.093 50.000 23.12 17.76 40.13 3.86
2626 3963 2.679837 TCTGATTCCAGAAATTCGCTGC 59.320 45.455 0.00 0.00 45.74 5.25
2627 3964 1.745087 TGATTCCAGAAATTCGCTGCC 59.255 47.619 0.00 0.00 32.06 4.85
2628 3965 1.745087 GATTCCAGAAATTCGCTGCCA 59.255 47.619 0.00 0.00 32.06 4.92
2629 3966 1.614996 TTCCAGAAATTCGCTGCCAA 58.385 45.000 0.00 0.00 32.06 4.52
2630 3967 1.614996 TCCAGAAATTCGCTGCCAAA 58.385 45.000 0.00 0.00 32.06 3.28
2631 3968 1.959985 TCCAGAAATTCGCTGCCAAAA 59.040 42.857 0.00 0.00 32.06 2.44
2632 3969 2.562298 TCCAGAAATTCGCTGCCAAAAT 59.438 40.909 0.00 0.00 32.06 1.82
2633 3970 2.925563 CCAGAAATTCGCTGCCAAAATC 59.074 45.455 0.00 0.00 32.06 2.17
2634 3971 3.367703 CCAGAAATTCGCTGCCAAAATCT 60.368 43.478 0.00 0.00 32.06 2.40
2635 3972 3.611113 CAGAAATTCGCTGCCAAAATCTG 59.389 43.478 9.62 9.62 0.00 2.90
2636 3973 3.507233 AGAAATTCGCTGCCAAAATCTGA 59.493 39.130 0.00 0.00 0.00 3.27
2637 3974 3.940209 AATTCGCTGCCAAAATCTGAA 57.060 38.095 0.00 0.00 0.00 3.02
2638 3975 3.940209 ATTCGCTGCCAAAATCTGAAA 57.060 38.095 0.00 0.00 0.00 2.69
2639 3976 3.724508 TTCGCTGCCAAAATCTGAAAA 57.275 38.095 0.00 0.00 0.00 2.29
2640 3977 3.724508 TCGCTGCCAAAATCTGAAAAA 57.275 38.095 0.00 0.00 0.00 1.94
2657 3994 2.750665 AAAAAGGAAGCAGCCCAGG 58.249 52.632 0.00 0.00 0.00 4.45
2658 3995 0.188342 AAAAAGGAAGCAGCCCAGGA 59.812 50.000 0.00 0.00 0.00 3.86
2659 3996 0.540597 AAAAGGAAGCAGCCCAGGAC 60.541 55.000 0.00 0.00 0.00 3.85
2660 3997 1.430369 AAAGGAAGCAGCCCAGGACT 61.430 55.000 0.00 0.00 0.00 3.85
2661 3998 1.430369 AAGGAAGCAGCCCAGGACTT 61.430 55.000 0.00 0.00 0.00 3.01
2662 3999 1.676967 GGAAGCAGCCCAGGACTTG 60.677 63.158 0.00 0.00 0.00 3.16
2663 4000 2.282745 AAGCAGCCCAGGACTTGC 60.283 61.111 0.00 0.00 36.83 4.01
2664 4001 3.255397 AGCAGCCCAGGACTTGCT 61.255 61.111 6.51 6.51 41.74 3.91
2665 4002 2.282745 GCAGCCCAGGACTTGCTT 60.283 61.111 0.00 0.00 31.77 3.91
2666 4003 1.905354 GCAGCCCAGGACTTGCTTT 60.905 57.895 0.00 0.00 31.77 3.51
2667 4004 1.466851 GCAGCCCAGGACTTGCTTTT 61.467 55.000 0.00 0.00 31.77 2.27
2668 4005 1.043022 CAGCCCAGGACTTGCTTTTT 58.957 50.000 0.00 0.00 31.77 1.94
2669 4006 2.238521 CAGCCCAGGACTTGCTTTTTA 58.761 47.619 0.00 0.00 31.77 1.52
2670 4007 2.627699 CAGCCCAGGACTTGCTTTTTAA 59.372 45.455 0.00 0.00 31.77 1.52
2671 4008 3.069443 CAGCCCAGGACTTGCTTTTTAAA 59.931 43.478 0.00 0.00 31.77 1.52
2672 4009 3.709141 AGCCCAGGACTTGCTTTTTAAAA 59.291 39.130 0.00 0.00 29.17 1.52
2673 4010 4.347876 AGCCCAGGACTTGCTTTTTAAAAT 59.652 37.500 0.55 0.00 29.17 1.82
2674 4011 4.690748 GCCCAGGACTTGCTTTTTAAAATC 59.309 41.667 0.55 0.00 0.00 2.17
2675 4012 5.511373 GCCCAGGACTTGCTTTTTAAAATCT 60.511 40.000 0.55 0.00 0.00 2.40
2676 4013 5.928264 CCCAGGACTTGCTTTTTAAAATCTG 59.072 40.000 0.55 0.00 0.00 2.90
2677 4014 6.239289 CCCAGGACTTGCTTTTTAAAATCTGA 60.239 38.462 0.55 0.00 0.00 3.27
2678 4015 7.381323 CCAGGACTTGCTTTTTAAAATCTGAT 58.619 34.615 0.55 0.00 0.00 2.90
2679 4016 7.874528 CCAGGACTTGCTTTTTAAAATCTGATT 59.125 33.333 0.55 0.00 0.00 2.57
2680 4017 8.919661 CAGGACTTGCTTTTTAAAATCTGATTC 58.080 33.333 2.92 0.00 0.00 2.52
2681 4018 8.090831 AGGACTTGCTTTTTAAAATCTGATTCC 58.909 33.333 2.92 5.03 0.00 3.01
2682 4019 7.062255 GGACTTGCTTTTTAAAATCTGATTCCG 59.938 37.037 2.92 0.00 0.00 4.30
2683 4020 7.433680 ACTTGCTTTTTAAAATCTGATTCCGT 58.566 30.769 2.92 0.00 0.00 4.69
2684 4021 7.926018 ACTTGCTTTTTAAAATCTGATTCCGTT 59.074 29.630 2.92 0.00 0.00 4.44
2685 4022 9.405587 CTTGCTTTTTAAAATCTGATTCCGTTA 57.594 29.630 2.92 0.00 0.00 3.18
2686 4023 8.736751 TGCTTTTTAAAATCTGATTCCGTTAC 57.263 30.769 2.92 0.00 0.00 2.50
2687 4024 7.535940 TGCTTTTTAAAATCTGATTCCGTTACG 59.464 33.333 2.92 0.00 0.00 3.18
2700 4037 2.690786 CCGTTACGGGTCAAAATCTGA 58.309 47.619 17.00 0.00 44.15 3.27
2701 4038 3.068560 CCGTTACGGGTCAAAATCTGAA 58.931 45.455 17.00 0.00 44.15 3.02
2702 4039 3.499157 CCGTTACGGGTCAAAATCTGAAA 59.501 43.478 17.00 0.00 44.15 2.69
2703 4040 4.023878 CCGTTACGGGTCAAAATCTGAAAA 60.024 41.667 17.00 0.00 44.15 2.29
2704 4041 5.505985 CCGTTACGGGTCAAAATCTGAAAAA 60.506 40.000 17.00 0.00 44.15 1.94
2705 4042 5.623673 CGTTACGGGTCAAAATCTGAAAAAG 59.376 40.000 0.00 0.00 35.22 2.27
2706 4043 3.977427 ACGGGTCAAAATCTGAAAAAGC 58.023 40.909 0.00 0.00 35.22 3.51
2707 4044 3.636764 ACGGGTCAAAATCTGAAAAAGCT 59.363 39.130 0.00 0.00 35.22 3.74
2708 4045 3.983344 CGGGTCAAAATCTGAAAAAGCTG 59.017 43.478 0.00 0.00 35.22 4.24
2709 4046 4.261572 CGGGTCAAAATCTGAAAAAGCTGA 60.262 41.667 0.00 0.00 35.22 4.26
2710 4047 5.600696 GGGTCAAAATCTGAAAAAGCTGAA 58.399 37.500 0.00 0.00 35.22 3.02
2711 4048 5.463392 GGGTCAAAATCTGAAAAAGCTGAAC 59.537 40.000 0.00 0.00 35.22 3.18
2712 4049 5.463392 GGTCAAAATCTGAAAAAGCTGAACC 59.537 40.000 0.00 0.00 35.22 3.62
2713 4050 6.042143 GTCAAAATCTGAAAAAGCTGAACCA 58.958 36.000 0.00 0.00 35.22 3.67
2714 4051 6.703165 GTCAAAATCTGAAAAAGCTGAACCAT 59.297 34.615 0.00 0.00 35.22 3.55
2715 4052 6.925165 TCAAAATCTGAAAAAGCTGAACCATC 59.075 34.615 0.00 0.00 0.00 3.51
2716 4053 6.661304 AAATCTGAAAAAGCTGAACCATCT 57.339 33.333 0.00 0.00 0.00 2.90
2717 4054 6.661304 AATCTGAAAAAGCTGAACCATCTT 57.339 33.333 0.00 0.00 0.00 2.40
2718 4055 6.661304 ATCTGAAAAAGCTGAACCATCTTT 57.339 33.333 0.00 0.00 32.27 2.52
2719 4056 6.469782 TCTGAAAAAGCTGAACCATCTTTT 57.530 33.333 0.00 3.54 40.13 2.27
2720 4057 6.877236 TCTGAAAAAGCTGAACCATCTTTTT 58.123 32.000 16.30 16.30 45.82 1.94
2723 4060 6.908870 AAAAAGCTGAACCATCTTTTTCAC 57.091 33.333 12.62 0.00 42.29 3.18
2724 4061 5.596836 AAAGCTGAACCATCTTTTTCACA 57.403 34.783 0.00 0.00 27.29 3.58
2725 4062 5.796424 AAGCTGAACCATCTTTTTCACAT 57.204 34.783 0.00 0.00 0.00 3.21
2726 4063 5.382618 AGCTGAACCATCTTTTTCACATC 57.617 39.130 0.00 0.00 0.00 3.06
2727 4064 4.828939 AGCTGAACCATCTTTTTCACATCA 59.171 37.500 0.00 0.00 0.00 3.07
2728 4065 5.302568 AGCTGAACCATCTTTTTCACATCAA 59.697 36.000 0.00 0.00 0.00 2.57
2729 4066 5.984926 GCTGAACCATCTTTTTCACATCAAA 59.015 36.000 0.00 0.00 0.00 2.69
2730 4067 6.647895 GCTGAACCATCTTTTTCACATCAAAT 59.352 34.615 0.00 0.00 0.00 2.32
2731 4068 7.172019 GCTGAACCATCTTTTTCACATCAAATT 59.828 33.333 0.00 0.00 0.00 1.82
2732 4069 8.961294 TGAACCATCTTTTTCACATCAAATTT 57.039 26.923 0.00 0.00 0.00 1.82
2733 4070 9.393512 TGAACCATCTTTTTCACATCAAATTTT 57.606 25.926 0.00 0.00 0.00 1.82
2736 4073 9.393512 ACCATCTTTTTCACATCAAATTTTTCA 57.606 25.926 0.00 0.00 0.00 2.69
2737 4074 9.654417 CCATCTTTTTCACATCAAATTTTTCAC 57.346 29.630 0.00 0.00 0.00 3.18
2740 4077 8.389603 TCTTTTTCACATCAAATTTTTCACAGC 58.610 29.630 0.00 0.00 0.00 4.40
2741 4078 7.846644 TTTTCACATCAAATTTTTCACAGCT 57.153 28.000 0.00 0.00 0.00 4.24
2742 4079 6.831727 TTCACATCAAATTTTTCACAGCTG 57.168 33.333 13.48 13.48 0.00 4.24
2743 4080 5.904941 TCACATCAAATTTTTCACAGCTGT 58.095 33.333 15.25 15.25 0.00 4.40
2744 4081 6.339730 TCACATCAAATTTTTCACAGCTGTT 58.660 32.000 18.94 0.00 0.00 3.16
2745 4082 6.817641 TCACATCAAATTTTTCACAGCTGTTT 59.182 30.769 18.94 4.82 0.00 2.83
2746 4083 7.333921 TCACATCAAATTTTTCACAGCTGTTTT 59.666 29.630 18.94 11.41 0.00 2.43
2747 4084 7.964011 CACATCAAATTTTTCACAGCTGTTTTT 59.036 29.630 18.94 7.61 0.00 1.94
2748 4085 8.177013 ACATCAAATTTTTCACAGCTGTTTTTC 58.823 29.630 18.94 0.00 0.00 2.29
2749 4086 7.903995 TCAAATTTTTCACAGCTGTTTTTCT 57.096 28.000 18.94 0.00 0.00 2.52
2750 4087 7.962917 TCAAATTTTTCACAGCTGTTTTTCTC 58.037 30.769 18.94 0.00 0.00 2.87
2751 4088 7.601886 TCAAATTTTTCACAGCTGTTTTTCTCA 59.398 29.630 18.94 0.00 0.00 3.27
2752 4089 7.903995 AATTTTTCACAGCTGTTTTTCTCAA 57.096 28.000 18.94 4.38 0.00 3.02
2753 4090 6.704512 TTTTTCACAGCTGTTTTTCTCAAC 57.295 33.333 18.94 0.00 0.00 3.18
2754 4091 5.384063 TTTCACAGCTGTTTTTCTCAACA 57.616 34.783 18.94 0.00 35.33 3.33
2767 4104 9.650539 TGTTTTTCTCAACAGATTGATTTTTCA 57.349 25.926 0.00 0.00 43.92 2.69
2768 4105 9.906111 GTTTTTCTCAACAGATTGATTTTTCAC 57.094 29.630 0.00 0.00 43.92 3.18
2769 4106 9.650539 TTTTTCTCAACAGATTGATTTTTCACA 57.349 25.926 0.00 0.00 43.92 3.58
2770 4107 8.861033 TTTCTCAACAGATTGATTTTTCACAG 57.139 30.769 0.00 0.00 43.92 3.66
2771 4108 6.441274 TCTCAACAGATTGATTTTTCACAGC 58.559 36.000 0.00 0.00 43.92 4.40
2772 4109 6.263842 TCTCAACAGATTGATTTTTCACAGCT 59.736 34.615 0.00 0.00 43.92 4.24
2773 4110 7.445096 TCTCAACAGATTGATTTTTCACAGCTA 59.555 33.333 0.00 0.00 43.92 3.32
2774 4111 7.362662 TCAACAGATTGATTTTTCACAGCTAC 58.637 34.615 0.00 0.00 40.01 3.58
2775 4112 7.229306 TCAACAGATTGATTTTTCACAGCTACT 59.771 33.333 0.00 0.00 40.01 2.57
2776 4113 7.516198 ACAGATTGATTTTTCACAGCTACTT 57.484 32.000 0.00 0.00 0.00 2.24
2777 4114 7.945134 ACAGATTGATTTTTCACAGCTACTTT 58.055 30.769 0.00 0.00 0.00 2.66
2778 4115 8.416329 ACAGATTGATTTTTCACAGCTACTTTT 58.584 29.630 0.00 0.00 0.00 2.27
2779 4116 9.897744 CAGATTGATTTTTCACAGCTACTTTTA 57.102 29.630 0.00 0.00 0.00 1.52
2787 4124 9.877178 TTTTTCACAGCTACTTTTAAAAATCCA 57.123 25.926 1.66 0.00 0.00 3.41
2789 4126 9.474920 TTTCACAGCTACTTTTAAAAATCCATG 57.525 29.630 1.66 2.08 0.00 3.66
2790 4127 7.601856 TCACAGCTACTTTTAAAAATCCATGG 58.398 34.615 4.97 4.97 0.00 3.66
2791 4128 6.311200 CACAGCTACTTTTAAAAATCCATGGC 59.689 38.462 6.96 0.26 0.00 4.40
2792 4129 5.812127 CAGCTACTTTTAAAAATCCATGGCC 59.188 40.000 6.96 0.00 0.00 5.36
2793 4130 4.803613 GCTACTTTTAAAAATCCATGGCCG 59.196 41.667 6.96 0.00 0.00 6.13
2794 4131 5.393678 GCTACTTTTAAAAATCCATGGCCGA 60.394 40.000 6.96 0.00 0.00 5.54
2795 4132 5.476091 ACTTTTAAAAATCCATGGCCGAA 57.524 34.783 6.96 0.00 0.00 4.30
2796 4133 5.234752 ACTTTTAAAAATCCATGGCCGAAC 58.765 37.500 6.96 0.00 0.00 3.95
2797 4134 3.878160 TTAAAAATCCATGGCCGAACC 57.122 42.857 6.96 0.00 39.84 3.62
2806 4143 4.700365 GGCCGAACCAAACAGCGC 62.700 66.667 0.00 0.00 38.86 5.92
2807 4144 4.700365 GCCGAACCAAACAGCGCC 62.700 66.667 2.29 0.00 0.00 6.53
2829 4166 3.077359 CAAAGACGGCTCCATCTTCTTT 58.923 45.455 0.00 0.00 37.06 2.52
2830 4167 2.393271 AGACGGCTCCATCTTCTTTG 57.607 50.000 0.00 0.00 0.00 2.77
2831 4168 1.902508 AGACGGCTCCATCTTCTTTGA 59.097 47.619 0.00 0.00 0.00 2.69
2832 4169 2.503356 AGACGGCTCCATCTTCTTTGAT 59.497 45.455 0.00 0.00 0.00 2.57
2851 4191 1.044611 TGGTGGATCAGACGTGAACA 58.955 50.000 0.00 0.00 35.88 3.18
2864 4204 1.739067 GTGAACAGGGTGATAGTGCC 58.261 55.000 0.00 0.00 0.00 5.01
2871 4211 1.122019 GGGTGATAGTGCCTCCGGAT 61.122 60.000 3.57 0.00 0.00 4.18
2873 4213 0.034059 GTGATAGTGCCTCCGGATGG 59.966 60.000 3.57 10.26 0.00 3.51
2896 4236 5.157940 TGGAGTCTGAATCTTTTCTCCAG 57.842 43.478 5.02 0.00 43.97 3.86
2897 4237 4.840680 TGGAGTCTGAATCTTTTCTCCAGA 59.159 41.667 5.02 0.00 43.97 3.86
2900 4240 4.561105 GTCTGAATCTTTTCTCCAGACGT 58.439 43.478 0.00 0.00 42.54 4.34
2901 4241 4.387256 GTCTGAATCTTTTCTCCAGACGTG 59.613 45.833 0.00 0.00 42.54 4.49
2903 4243 4.956085 TGAATCTTTTCTCCAGACGTGAA 58.044 39.130 0.00 0.00 32.78 3.18
2904 4244 4.750098 TGAATCTTTTCTCCAGACGTGAAC 59.250 41.667 0.00 0.00 32.78 3.18
2907 4247 2.526304 TTTCTCCAGACGTGAACAGG 57.474 50.000 0.00 0.00 0.00 4.00
2908 4248 0.679505 TTCTCCAGACGTGAACAGGG 59.320 55.000 0.00 0.00 0.00 4.45
2909 4249 0.469331 TCTCCAGACGTGAACAGGGT 60.469 55.000 0.00 0.00 0.00 4.34
2910 4250 0.319900 CTCCAGACGTGAACAGGGTG 60.320 60.000 0.00 0.00 0.00 4.61
2911 4251 0.757561 TCCAGACGTGAACAGGGTGA 60.758 55.000 0.00 0.00 0.00 4.02
2912 4252 0.321671 CCAGACGTGAACAGGGTGAT 59.678 55.000 0.00 0.00 0.00 3.06
2913 4253 1.548719 CCAGACGTGAACAGGGTGATA 59.451 52.381 0.00 0.00 0.00 2.15
2914 4254 2.417379 CCAGACGTGAACAGGGTGATAG 60.417 54.545 0.00 0.00 0.00 2.08
2915 4255 2.231478 CAGACGTGAACAGGGTGATAGT 59.769 50.000 0.00 0.00 0.00 2.12
2916 4256 2.231478 AGACGTGAACAGGGTGATAGTG 59.769 50.000 0.00 0.00 0.00 2.74
2917 4257 1.337823 ACGTGAACAGGGTGATAGTGC 60.338 52.381 0.00 0.00 0.00 4.40
2918 4258 1.739067 GTGAACAGGGTGATAGTGCC 58.261 55.000 0.00 0.00 0.00 5.01
2919 4259 1.279271 GTGAACAGGGTGATAGTGCCT 59.721 52.381 0.00 0.00 0.00 4.75
2920 4260 1.555075 TGAACAGGGTGATAGTGCCTC 59.445 52.381 0.00 0.00 0.00 4.70
2921 4261 0.912486 AACAGGGTGATAGTGCCTCC 59.088 55.000 0.00 0.00 0.00 4.30
2922 4262 1.330655 ACAGGGTGATAGTGCCTCCG 61.331 60.000 0.00 0.00 0.00 4.63
2923 4263 1.762460 AGGGTGATAGTGCCTCCGG 60.762 63.158 0.00 0.00 0.00 5.14
2924 4264 1.760875 GGGTGATAGTGCCTCCGGA 60.761 63.158 2.93 2.93 0.00 5.14
2925 4265 1.335132 GGGTGATAGTGCCTCCGGAA 61.335 60.000 5.23 0.00 0.00 4.30
2926 4266 0.105039 GGTGATAGTGCCTCCGGAAG 59.895 60.000 5.23 0.00 0.00 3.46
2948 4288 2.093467 GCTCTCTCTACAAAAAGCGCAG 59.907 50.000 11.47 0.00 0.00 5.18
2949 4289 3.321497 CTCTCTCTACAAAAAGCGCAGT 58.679 45.455 11.47 2.18 0.00 4.40
2980 4406 9.900112 AAGTGATAGTTTCCCTACCTTCTATAT 57.100 33.333 0.00 0.00 0.00 0.86
2994 4420 5.163152 ACCTTCTATATGGGGCTTCAAAGAG 60.163 44.000 0.00 0.00 0.00 2.85
3015 4441 5.355350 AGAGAAGCTTAATTTGGATGAACGG 59.645 40.000 0.00 0.00 0.00 4.44
3034 4461 3.866832 ACGGAAGTGAAGTGTTGACACAA 60.867 43.478 15.87 0.00 46.46 3.33
3035 4462 5.337347 ACGGAAGTGAAGTGTTGACACAAA 61.337 41.667 15.87 0.00 46.46 2.83
3107 4534 2.036733 TCACCTCGACACGGATTCTTTT 59.963 45.455 0.00 0.00 0.00 2.27
3141 4569 8.555361 GTTCACATATCCATTTTTAGCTCTCTC 58.445 37.037 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 151 2.048603 GGCCTGGCTTCAAATCGCT 61.049 57.895 19.68 0.00 0.00 4.93
255 256 3.387091 CACGATGACCCCCACCGA 61.387 66.667 0.00 0.00 0.00 4.69
269 270 1.296715 CTCCACTTTCTCCCCCACG 59.703 63.158 0.00 0.00 0.00 4.94
357 358 1.403814 TCCTTCTCAAGATCCGCGAT 58.596 50.000 8.23 0.00 0.00 4.58
430 436 2.597510 GCGACCACCCAAGCCTTT 60.598 61.111 0.00 0.00 0.00 3.11
561 576 3.866582 CCTCCCACTCCCCATCGC 61.867 72.222 0.00 0.00 0.00 4.58
578 593 1.916181 TCCTCAGAATCAGGTTTCCCC 59.084 52.381 0.00 0.00 32.20 4.81
674 1981 1.209747 AGCCGTCCATTTCTCTTACCC 59.790 52.381 0.00 0.00 0.00 3.69
729 2037 1.287815 GGTAAACGGGCCAACAAGC 59.712 57.895 4.39 0.00 0.00 4.01
735 2043 2.713877 GACTTTATGGTAAACGGGCCA 58.286 47.619 4.39 0.00 39.33 5.36
750 2058 0.035458 CTTCTGGTCCAGCCGACTTT 59.965 55.000 14.64 0.00 41.64 2.66
752 2060 2.286523 CCTTCTGGTCCAGCCGACT 61.287 63.158 14.64 0.00 41.64 4.18
851 2159 1.081376 GTCCGAGTGACCGAGTGTG 60.081 63.158 0.00 0.00 38.09 3.82
891 2199 0.242286 GAGTCTCGCAGCTGTCTCAA 59.758 55.000 16.64 0.00 0.00 3.02
956 2264 1.404315 GCGAGAGGCCGATATAAAGGG 60.404 57.143 0.00 0.00 34.80 3.95
1058 2366 1.682684 AGCTGATTCGGTCGGAGGT 60.683 57.895 0.00 0.00 35.02 3.85
1161 2469 1.421485 GAACTTCTGCGACGCCATG 59.579 57.895 18.69 7.80 0.00 3.66
1296 2607 0.389037 TCGACAAGCAGTGCTAGCAG 60.389 55.000 20.03 8.82 38.25 4.24
1298 2609 0.649475 CATCGACAAGCAGTGCTAGC 59.351 55.000 20.09 8.10 38.25 3.42
1323 2636 0.530744 ATCAGACCGCAGCTTAACGA 59.469 50.000 2.27 0.00 0.00 3.85
1338 2651 5.445540 GCACACGACATGCATATCATATCAG 60.446 44.000 5.70 0.00 42.88 2.90
1340 2653 4.491441 CGCACACGACATGCATATCATATC 60.491 45.833 5.70 0.00 43.57 1.63
1628 2941 4.082523 ACCAGGATGTCCACGCGG 62.083 66.667 12.47 0.00 38.89 6.46
2152 3468 4.487948 ACGCAATGAATTTCATGGTCAAG 58.512 39.130 12.50 6.06 37.15 3.02
2182 3498 2.126596 CCTGCAACCCAGCAACACA 61.127 57.895 0.00 0.00 45.13 3.72
2183 3499 2.127232 ACCTGCAACCCAGCAACAC 61.127 57.895 0.00 0.00 45.13 3.32
2299 3623 4.047822 CGTACTACTACTACCAGACTCGG 58.952 52.174 0.00 0.00 0.00 4.63
2307 3631 4.455877 ACACACAACCGTACTACTACTACC 59.544 45.833 0.00 0.00 0.00 3.18
2309 3633 5.107104 CGAACACACAACCGTACTACTACTA 60.107 44.000 0.00 0.00 0.00 1.82
2310 3634 4.319766 CGAACACACAACCGTACTACTACT 60.320 45.833 0.00 0.00 0.00 2.57
2319 3652 0.249573 CCTACCGAACACACAACCGT 60.250 55.000 0.00 0.00 0.00 4.83
2358 3691 4.430423 CGCTTGACGCTTCCACGC 62.430 66.667 0.00 0.00 36.19 5.34
2419 3756 1.001378 CTCTGACAAAACGGGCCTTTG 60.001 52.381 14.72 14.72 39.26 2.77
2420 3757 1.318576 CTCTGACAAAACGGGCCTTT 58.681 50.000 0.84 0.00 0.00 3.11
2421 3758 0.537371 CCTCTGACAAAACGGGCCTT 60.537 55.000 0.84 0.00 0.00 4.35
2422 3759 1.073199 CCTCTGACAAAACGGGCCT 59.927 57.895 0.84 0.00 0.00 5.19
2423 3760 2.626780 GCCTCTGACAAAACGGGCC 61.627 63.158 0.00 0.00 34.19 5.80
2424 3761 2.626780 GGCCTCTGACAAAACGGGC 61.627 63.158 0.00 0.00 38.92 6.13
2425 3762 2.325082 CGGCCTCTGACAAAACGGG 61.325 63.158 0.00 0.00 0.00 5.28
2428 3765 1.269051 CCAAACGGCCTCTGACAAAAC 60.269 52.381 0.00 0.00 0.00 2.43
2429 3766 1.028905 CCAAACGGCCTCTGACAAAA 58.971 50.000 0.00 0.00 0.00 2.44
2430 3767 0.106918 ACCAAACGGCCTCTGACAAA 60.107 50.000 0.00 0.00 0.00 2.83
2431 3768 0.106918 AACCAAACGGCCTCTGACAA 60.107 50.000 0.00 0.00 0.00 3.18
2432 3769 0.534203 GAACCAAACGGCCTCTGACA 60.534 55.000 0.00 0.00 0.00 3.58
2433 3770 0.534203 TGAACCAAACGGCCTCTGAC 60.534 55.000 0.00 0.00 0.00 3.51
2434 3771 0.250295 CTGAACCAAACGGCCTCTGA 60.250 55.000 0.00 0.00 0.00 3.27
2435 3772 0.535102 ACTGAACCAAACGGCCTCTG 60.535 55.000 0.00 0.00 0.00 3.35
2436 3773 0.182775 AACTGAACCAAACGGCCTCT 59.817 50.000 0.00 0.00 0.00 3.69
2437 3774 1.029681 AAACTGAACCAAACGGCCTC 58.970 50.000 0.00 0.00 0.00 4.70
2438 3775 1.480789 AAAACTGAACCAAACGGCCT 58.519 45.000 0.00 0.00 0.00 5.19
2439 3776 2.303163 AAAAACTGAACCAAACGGCC 57.697 45.000 0.00 0.00 0.00 6.13
2442 3779 4.605594 CGTCGATAAAAACTGAACCAAACG 59.394 41.667 0.00 0.00 0.00 3.60
2443 3780 4.907582 CCGTCGATAAAAACTGAACCAAAC 59.092 41.667 0.00 0.00 0.00 2.93
2444 3781 4.815308 TCCGTCGATAAAAACTGAACCAAA 59.185 37.500 0.00 0.00 0.00 3.28
2446 3783 3.992643 TCCGTCGATAAAAACTGAACCA 58.007 40.909 0.00 0.00 0.00 3.67
2447 3784 5.446875 GGAATCCGTCGATAAAAACTGAACC 60.447 44.000 0.00 0.00 0.00 3.62
2448 3785 5.557388 GGAATCCGTCGATAAAAACTGAAC 58.443 41.667 0.00 0.00 0.00 3.18
2451 3788 4.178156 CGGAATCCGTCGATAAAAACTG 57.822 45.455 14.46 0.00 42.73 3.16
2478 3815 0.169009 GATTCTGTTGTTCGGCAGCC 59.831 55.000 0.00 0.00 33.09 4.85
2479 3816 1.135859 CAGATTCTGTTGTTCGGCAGC 60.136 52.381 5.46 0.00 33.09 5.25
2480 3817 1.466167 CCAGATTCTGTTGTTCGGCAG 59.534 52.381 12.54 0.00 0.00 4.85
2481 3818 1.071542 TCCAGATTCTGTTGTTCGGCA 59.928 47.619 12.54 0.00 0.00 5.69
2482 3819 1.734465 CTCCAGATTCTGTTGTTCGGC 59.266 52.381 12.54 0.00 0.00 5.54
2483 3820 3.319137 TCTCCAGATTCTGTTGTTCGG 57.681 47.619 12.54 0.00 0.00 4.30
2484 3821 4.331168 GGATTCTCCAGATTCTGTTGTTCG 59.669 45.833 12.54 0.00 36.28 3.95
2485 3822 4.331168 CGGATTCTCCAGATTCTGTTGTTC 59.669 45.833 12.54 3.38 35.91 3.18
2486 3823 4.020218 TCGGATTCTCCAGATTCTGTTGTT 60.020 41.667 12.54 0.00 35.91 2.83
2487 3824 3.515502 TCGGATTCTCCAGATTCTGTTGT 59.484 43.478 12.54 0.00 35.91 3.32
2488 3825 4.128925 TCGGATTCTCCAGATTCTGTTG 57.871 45.455 12.54 5.11 35.91 3.33
2489 3826 5.365021 AATCGGATTCTCCAGATTCTGTT 57.635 39.130 12.54 0.00 36.07 3.16
2490 3827 5.104776 TCAAATCGGATTCTCCAGATTCTGT 60.105 40.000 12.54 0.00 38.14 3.41
2491 3828 5.363101 TCAAATCGGATTCTCCAGATTCTG 58.637 41.667 6.70 6.70 38.14 3.02
2492 3829 5.365025 TCTCAAATCGGATTCTCCAGATTCT 59.635 40.000 3.28 0.00 38.14 2.40
2493 3830 5.605534 TCTCAAATCGGATTCTCCAGATTC 58.394 41.667 3.28 0.00 38.14 2.52
2494 3831 5.620738 TCTCAAATCGGATTCTCCAGATT 57.379 39.130 3.28 7.15 39.57 2.40
2495 3832 5.620738 TTCTCAAATCGGATTCTCCAGAT 57.379 39.130 3.28 0.00 35.91 2.90
2496 3833 5.420725 TTTCTCAAATCGGATTCTCCAGA 57.579 39.130 3.28 1.03 35.91 3.86
2497 3834 6.510799 CGAATTTCTCAAATCGGATTCTCCAG 60.511 42.308 3.28 0.00 35.91 3.86
2498 3835 5.294306 CGAATTTCTCAAATCGGATTCTCCA 59.706 40.000 3.28 0.00 35.91 3.86
2499 3836 5.742446 CGAATTTCTCAAATCGGATTCTCC 58.258 41.667 3.28 0.00 0.00 3.71
2500 3837 5.007136 AGCGAATTTCTCAAATCGGATTCTC 59.993 40.000 3.28 0.00 0.00 2.87
2501 3838 4.878397 AGCGAATTTCTCAAATCGGATTCT 59.122 37.500 3.28 0.00 0.00 2.40
2502 3839 4.966366 CAGCGAATTTCTCAAATCGGATTC 59.034 41.667 3.28 0.00 0.00 2.52
2503 3840 4.396166 ACAGCGAATTTCTCAAATCGGATT 59.604 37.500 0.00 0.00 0.00 3.01
2504 3841 3.941483 ACAGCGAATTTCTCAAATCGGAT 59.059 39.130 0.00 0.00 0.00 4.18
2505 3842 3.334691 ACAGCGAATTTCTCAAATCGGA 58.665 40.909 0.00 0.00 0.00 4.55
2506 3843 3.125146 TGACAGCGAATTTCTCAAATCGG 59.875 43.478 0.00 0.00 0.00 4.18
2507 3844 4.326413 TGACAGCGAATTTCTCAAATCG 57.674 40.909 0.00 0.00 0.00 3.34
2508 3845 5.570589 CCTTTGACAGCGAATTTCTCAAATC 59.429 40.000 10.28 0.00 32.02 2.17
2509 3846 5.464168 CCTTTGACAGCGAATTTCTCAAAT 58.536 37.500 10.28 0.00 32.02 2.32
2510 3847 4.792704 GCCTTTGACAGCGAATTTCTCAAA 60.793 41.667 9.73 9.73 31.66 2.69
2511 3848 3.304659 GCCTTTGACAGCGAATTTCTCAA 60.305 43.478 0.00 0.00 0.00 3.02
2512 3849 2.226437 GCCTTTGACAGCGAATTTCTCA 59.774 45.455 0.00 0.00 0.00 3.27
2513 3850 2.414691 GGCCTTTGACAGCGAATTTCTC 60.415 50.000 0.00 0.00 0.00 2.87
2514 3851 1.541588 GGCCTTTGACAGCGAATTTCT 59.458 47.619 0.00 0.00 0.00 2.52
2515 3852 1.402852 GGGCCTTTGACAGCGAATTTC 60.403 52.381 0.84 0.00 0.00 2.17
2516 3853 0.603065 GGGCCTTTGACAGCGAATTT 59.397 50.000 0.84 0.00 0.00 1.82
2517 3854 1.586154 CGGGCCTTTGACAGCGAATT 61.586 55.000 0.84 0.00 0.00 2.17
2518 3855 2.040544 CGGGCCTTTGACAGCGAAT 61.041 57.895 0.84 0.00 0.00 3.34
2519 3856 2.668212 CGGGCCTTTGACAGCGAA 60.668 61.111 0.84 0.00 0.00 4.70
2520 3857 2.951475 AAACGGGCCTTTGACAGCGA 62.951 55.000 0.84 0.00 0.00 4.93
2521 3858 2.551912 AAACGGGCCTTTGACAGCG 61.552 57.895 0.84 0.00 0.00 5.18
2522 3859 1.007387 CAAACGGGCCTTTGACAGC 60.007 57.895 18.04 0.00 33.61 4.40
2523 3860 1.106944 ACCAAACGGGCCTTTGACAG 61.107 55.000 22.16 12.55 42.05 3.51
2524 3861 0.684805 AACCAAACGGGCCTTTGACA 60.685 50.000 22.16 0.00 42.05 3.58
2525 3862 0.031585 GAACCAAACGGGCCTTTGAC 59.968 55.000 22.16 13.07 42.05 3.18
2526 3863 1.448922 CGAACCAAACGGGCCTTTGA 61.449 55.000 22.16 0.00 42.05 2.69
2527 3864 1.007849 CGAACCAAACGGGCCTTTG 60.008 57.895 16.70 16.70 42.05 2.77
2528 3865 0.538746 ATCGAACCAAACGGGCCTTT 60.539 50.000 0.84 0.00 42.05 3.11
2529 3866 0.538746 AATCGAACCAAACGGGCCTT 60.539 50.000 0.84 0.00 42.05 4.35
2530 3867 0.538746 AAATCGAACCAAACGGGCCT 60.539 50.000 0.84 0.00 42.05 5.19
2531 3868 0.315886 AAAATCGAACCAAACGGGCC 59.684 50.000 0.00 0.00 42.05 5.80
2532 3869 2.143008 AAAAATCGAACCAAACGGGC 57.857 45.000 0.00 0.00 42.05 6.13
2533 3870 4.092816 CGATAAAAATCGAACCAAACGGG 58.907 43.478 1.63 0.00 46.12 5.28
2544 3881 4.506654 AGTGGAATCCGTCGATAAAAATCG 59.493 41.667 0.00 1.44 44.73 3.34
2545 3882 5.738370 CAGTGGAATCCGTCGATAAAAATC 58.262 41.667 0.00 0.00 0.00 2.17
2546 3883 4.035208 GCAGTGGAATCCGTCGATAAAAAT 59.965 41.667 0.00 0.00 0.00 1.82
2547 3884 3.372822 GCAGTGGAATCCGTCGATAAAAA 59.627 43.478 0.00 0.00 0.00 1.94
2548 3885 2.933906 GCAGTGGAATCCGTCGATAAAA 59.066 45.455 0.00 0.00 0.00 1.52
2549 3886 2.546778 GCAGTGGAATCCGTCGATAAA 58.453 47.619 0.00 0.00 0.00 1.40
2550 3887 1.202486 GGCAGTGGAATCCGTCGATAA 60.202 52.381 0.00 0.00 0.00 1.75
2551 3888 0.387929 GGCAGTGGAATCCGTCGATA 59.612 55.000 0.00 0.00 0.00 2.92
2552 3889 1.144057 GGCAGTGGAATCCGTCGAT 59.856 57.895 0.00 0.00 0.00 3.59
2553 3890 2.577059 GGCAGTGGAATCCGTCGA 59.423 61.111 0.00 0.00 0.00 4.20
2554 3891 2.885644 CGGCAGTGGAATCCGTCG 60.886 66.667 0.00 0.00 38.47 5.12
2555 3892 3.195698 GCGGCAGTGGAATCCGTC 61.196 66.667 8.43 0.00 44.58 4.79
2556 3893 4.015406 TGCGGCAGTGGAATCCGT 62.015 61.111 0.00 0.00 44.58 4.69
2557 3894 3.499737 GTGCGGCAGTGGAATCCG 61.500 66.667 1.18 2.85 45.46 4.18
2558 3895 2.359850 TGTGCGGCAGTGGAATCC 60.360 61.111 1.18 0.00 0.00 3.01
2559 3896 3.044059 GCTGTGCGGCAGTGGAATC 62.044 63.158 1.18 0.00 46.64 2.52
2560 3897 3.058160 GCTGTGCGGCAGTGGAAT 61.058 61.111 1.18 0.00 46.64 3.01
2561 3898 4.560743 TGCTGTGCGGCAGTGGAA 62.561 61.111 1.18 0.00 46.64 3.53
2567 3904 2.036571 CAGATTCTGCTGTGCGGCA 61.037 57.895 0.00 0.00 40.15 5.69
2568 3905 1.300971 TTCAGATTCTGCTGTGCGGC 61.301 55.000 8.89 0.00 37.20 6.53
2569 3906 1.063616 CATTCAGATTCTGCTGTGCGG 59.936 52.381 8.89 0.00 37.20 5.69
2570 3907 1.063616 CCATTCAGATTCTGCTGTGCG 59.936 52.381 8.89 0.00 37.20 5.34
2571 3908 1.202268 GCCATTCAGATTCTGCTGTGC 60.202 52.381 8.89 9.99 37.20 4.57
2572 3909 2.089201 TGCCATTCAGATTCTGCTGTG 58.911 47.619 8.89 7.17 37.20 3.66
2573 3910 2.502142 TGCCATTCAGATTCTGCTGT 57.498 45.000 8.89 0.00 37.20 4.40
2574 3911 3.508762 GTTTGCCATTCAGATTCTGCTG 58.491 45.455 8.89 8.57 37.24 4.41
2575 3912 2.494870 GGTTTGCCATTCAGATTCTGCT 59.505 45.455 8.89 0.00 34.09 4.24
2576 3913 2.417787 GGGTTTGCCATTCAGATTCTGC 60.418 50.000 8.89 0.00 36.17 4.26
2577 3914 2.827322 TGGGTTTGCCATTCAGATTCTG 59.173 45.455 7.38 7.38 36.17 3.02
2578 3915 3.094572 CTGGGTTTGCCATTCAGATTCT 58.905 45.455 0.00 0.00 36.17 2.40
2579 3916 2.417787 GCTGGGTTTGCCATTCAGATTC 60.418 50.000 0.00 0.00 36.17 2.52
2580 3917 1.551883 GCTGGGTTTGCCATTCAGATT 59.448 47.619 0.00 0.00 36.17 2.40
2581 3918 1.188863 GCTGGGTTTGCCATTCAGAT 58.811 50.000 0.00 0.00 36.17 2.90
2582 3919 0.178967 TGCTGGGTTTGCCATTCAGA 60.179 50.000 0.00 0.00 36.17 3.27
2583 3920 0.245539 CTGCTGGGTTTGCCATTCAG 59.754 55.000 0.00 0.00 36.17 3.02
2584 3921 0.178967 TCTGCTGGGTTTGCCATTCA 60.179 50.000 0.00 0.00 36.17 2.57
2585 3922 0.968405 TTCTGCTGGGTTTGCCATTC 59.032 50.000 0.00 0.00 36.17 2.67
2586 3923 1.551883 GATTCTGCTGGGTTTGCCATT 59.448 47.619 0.00 0.00 36.17 3.16
2587 3924 1.188863 GATTCTGCTGGGTTTGCCAT 58.811 50.000 0.00 0.00 36.17 4.40
2588 3925 0.112995 AGATTCTGCTGGGTTTGCCA 59.887 50.000 0.00 0.00 36.17 4.92
2589 3926 0.529378 CAGATTCTGCTGGGTTTGCC 59.471 55.000 0.00 0.00 32.26 4.52
2590 3927 1.538047 TCAGATTCTGCTGGGTTTGC 58.462 50.000 8.89 0.00 36.55 3.68
2591 3928 3.129988 GGAATCAGATTCTGCTGGGTTTG 59.870 47.826 20.41 0.00 39.24 2.93
2592 3929 3.245371 TGGAATCAGATTCTGCTGGGTTT 60.245 43.478 20.41 0.00 39.24 3.27
2593 3930 2.309755 TGGAATCAGATTCTGCTGGGTT 59.690 45.455 20.41 0.00 39.24 4.11
2594 3931 1.918262 TGGAATCAGATTCTGCTGGGT 59.082 47.619 20.41 0.00 39.24 4.51
2595 3932 2.172082 TCTGGAATCAGATTCTGCTGGG 59.828 50.000 20.41 7.01 44.39 4.45
2596 3933 3.555527 TCTGGAATCAGATTCTGCTGG 57.444 47.619 20.41 8.40 44.39 4.85
2606 3943 2.223433 GGCAGCGAATTTCTGGAATCAG 60.223 50.000 9.70 0.00 42.21 2.90
2607 3944 1.745087 GGCAGCGAATTTCTGGAATCA 59.255 47.619 9.70 0.00 32.41 2.57
2608 3945 1.745087 TGGCAGCGAATTTCTGGAATC 59.255 47.619 9.70 0.00 32.41 2.52
2609 3946 1.838112 TGGCAGCGAATTTCTGGAAT 58.162 45.000 9.70 0.00 32.41 3.01
2610 3947 1.614996 TTGGCAGCGAATTTCTGGAA 58.385 45.000 9.70 0.00 32.41 3.53
2611 3948 1.614996 TTTGGCAGCGAATTTCTGGA 58.385 45.000 9.70 0.00 32.41 3.86
2612 3949 2.437200 TTTTGGCAGCGAATTTCTGG 57.563 45.000 9.70 0.00 32.41 3.86
2613 3950 3.611113 CAGATTTTGGCAGCGAATTTCTG 59.389 43.478 12.45 12.45 34.79 3.02
2614 3951 3.507233 TCAGATTTTGGCAGCGAATTTCT 59.493 39.130 0.00 0.00 0.00 2.52
2615 3952 3.836949 TCAGATTTTGGCAGCGAATTTC 58.163 40.909 0.00 0.00 0.00 2.17
2616 3953 3.940209 TCAGATTTTGGCAGCGAATTT 57.060 38.095 0.00 0.00 0.00 1.82
2617 3954 3.940209 TTCAGATTTTGGCAGCGAATT 57.060 38.095 0.00 0.00 0.00 2.17
2618 3955 3.940209 TTTCAGATTTTGGCAGCGAAT 57.060 38.095 0.00 0.00 0.00 3.34
2619 3956 3.724508 TTTTCAGATTTTGGCAGCGAA 57.275 38.095 0.00 0.00 0.00 4.70
2620 3957 3.724508 TTTTTCAGATTTTGGCAGCGA 57.275 38.095 0.00 0.00 0.00 4.93
2639 3976 0.188342 TCCTGGGCTGCTTCCTTTTT 59.812 50.000 0.00 0.00 0.00 1.94
2640 3977 0.540597 GTCCTGGGCTGCTTCCTTTT 60.541 55.000 0.00 0.00 0.00 2.27
2641 3978 1.075659 GTCCTGGGCTGCTTCCTTT 59.924 57.895 0.00 0.00 0.00 3.11
2642 3979 1.430369 AAGTCCTGGGCTGCTTCCTT 61.430 55.000 0.00 0.00 0.00 3.36
2643 3980 1.849823 AAGTCCTGGGCTGCTTCCT 60.850 57.895 0.00 0.00 0.00 3.36
2644 3981 1.676967 CAAGTCCTGGGCTGCTTCC 60.677 63.158 0.00 0.00 0.00 3.46
2645 3982 2.338785 GCAAGTCCTGGGCTGCTTC 61.339 63.158 0.00 0.00 0.00 3.86
2646 3983 2.282745 GCAAGTCCTGGGCTGCTT 60.283 61.111 0.00 0.00 0.00 3.91
2647 3984 2.363292 AAAGCAAGTCCTGGGCTGCT 62.363 55.000 16.19 16.19 38.04 4.24
2648 3985 1.466851 AAAAGCAAGTCCTGGGCTGC 61.467 55.000 0.00 8.12 38.04 5.25
2649 3986 1.043022 AAAAAGCAAGTCCTGGGCTG 58.957 50.000 0.00 0.00 38.04 4.85
2650 3987 2.675658 TAAAAAGCAAGTCCTGGGCT 57.324 45.000 0.00 0.00 40.14 5.19
2651 3988 3.744238 TTTAAAAAGCAAGTCCTGGGC 57.256 42.857 0.00 0.00 0.00 5.36
2652 3989 5.928264 CAGATTTTAAAAAGCAAGTCCTGGG 59.072 40.000 4.44 0.00 0.00 4.45
2653 3990 6.748132 TCAGATTTTAAAAAGCAAGTCCTGG 58.252 36.000 4.44 0.00 0.00 4.45
2654 3991 8.822652 AATCAGATTTTAAAAAGCAAGTCCTG 57.177 30.769 4.44 3.55 0.00 3.86
2655 3992 8.090831 GGAATCAGATTTTAAAAAGCAAGTCCT 58.909 33.333 4.44 0.00 0.00 3.85
2656 3993 7.062255 CGGAATCAGATTTTAAAAAGCAAGTCC 59.938 37.037 4.44 8.48 0.00 3.85
2657 3994 7.595130 ACGGAATCAGATTTTAAAAAGCAAGTC 59.405 33.333 4.44 0.00 0.00 3.01
2658 3995 7.433680 ACGGAATCAGATTTTAAAAAGCAAGT 58.566 30.769 4.44 0.00 0.00 3.16
2659 3996 7.873739 ACGGAATCAGATTTTAAAAAGCAAG 57.126 32.000 4.44 0.00 0.00 4.01
2660 3997 9.187455 GTAACGGAATCAGATTTTAAAAAGCAA 57.813 29.630 4.44 0.00 0.00 3.91
2661 3998 7.535940 CGTAACGGAATCAGATTTTAAAAAGCA 59.464 33.333 4.44 0.00 0.00 3.91
2662 3999 7.871583 CGTAACGGAATCAGATTTTAAAAAGC 58.128 34.615 4.44 0.59 0.00 3.51
2681 4018 4.735662 TTTCAGATTTTGACCCGTAACG 57.264 40.909 0.00 0.00 34.94 3.18
2682 4019 5.401376 GCTTTTTCAGATTTTGACCCGTAAC 59.599 40.000 0.00 0.00 34.94 2.50
2683 4020 5.300792 AGCTTTTTCAGATTTTGACCCGTAA 59.699 36.000 0.00 0.00 34.94 3.18
2684 4021 4.825085 AGCTTTTTCAGATTTTGACCCGTA 59.175 37.500 0.00 0.00 34.94 4.02
2685 4022 3.636764 AGCTTTTTCAGATTTTGACCCGT 59.363 39.130 0.00 0.00 34.94 5.28
2686 4023 3.983344 CAGCTTTTTCAGATTTTGACCCG 59.017 43.478 0.00 0.00 34.94 5.28
2687 4024 5.200368 TCAGCTTTTTCAGATTTTGACCC 57.800 39.130 0.00 0.00 34.94 4.46
2688 4025 5.463392 GGTTCAGCTTTTTCAGATTTTGACC 59.537 40.000 0.00 0.00 34.94 4.02
2689 4026 6.042143 TGGTTCAGCTTTTTCAGATTTTGAC 58.958 36.000 0.00 0.00 34.94 3.18
2690 4027 6.219417 TGGTTCAGCTTTTTCAGATTTTGA 57.781 33.333 0.00 0.00 0.00 2.69
2691 4028 6.927381 AGATGGTTCAGCTTTTTCAGATTTTG 59.073 34.615 0.00 0.00 0.00 2.44
2692 4029 7.059202 AGATGGTTCAGCTTTTTCAGATTTT 57.941 32.000 0.00 0.00 0.00 1.82
2693 4030 6.661304 AGATGGTTCAGCTTTTTCAGATTT 57.339 33.333 0.00 0.00 0.00 2.17
2694 4031 6.661304 AAGATGGTTCAGCTTTTTCAGATT 57.339 33.333 0.00 0.00 36.68 2.40
2695 4032 6.661304 AAAGATGGTTCAGCTTTTTCAGAT 57.339 33.333 5.46 0.00 45.87 2.90
2703 4040 5.302568 TGATGTGAAAAAGATGGTTCAGCTT 59.697 36.000 0.00 0.00 42.09 3.74
2704 4041 4.828939 TGATGTGAAAAAGATGGTTCAGCT 59.171 37.500 0.00 0.00 34.52 4.24
2705 4042 5.125100 TGATGTGAAAAAGATGGTTCAGC 57.875 39.130 0.00 0.00 34.52 4.26
2706 4043 8.597662 AATTTGATGTGAAAAAGATGGTTCAG 57.402 30.769 0.00 0.00 34.52 3.02
2707 4044 8.961294 AAATTTGATGTGAAAAAGATGGTTCA 57.039 26.923 0.00 0.00 0.00 3.18
2710 4047 9.393512 TGAAAAATTTGATGTGAAAAAGATGGT 57.606 25.926 0.00 0.00 0.00 3.55
2711 4048 9.654417 GTGAAAAATTTGATGTGAAAAAGATGG 57.346 29.630 0.00 0.00 0.00 3.51
2714 4051 8.389603 GCTGTGAAAAATTTGATGTGAAAAAGA 58.610 29.630 0.00 0.00 0.00 2.52
2715 4052 8.392612 AGCTGTGAAAAATTTGATGTGAAAAAG 58.607 29.630 0.00 0.00 0.00 2.27
2716 4053 8.176365 CAGCTGTGAAAAATTTGATGTGAAAAA 58.824 29.630 5.25 0.00 0.00 1.94
2717 4054 7.333921 ACAGCTGTGAAAAATTTGATGTGAAAA 59.666 29.630 20.97 0.00 0.00 2.29
2718 4055 6.817641 ACAGCTGTGAAAAATTTGATGTGAAA 59.182 30.769 20.97 0.00 0.00 2.69
2719 4056 6.339730 ACAGCTGTGAAAAATTTGATGTGAA 58.660 32.000 20.97 0.00 0.00 3.18
2720 4057 5.904941 ACAGCTGTGAAAAATTTGATGTGA 58.095 33.333 20.97 0.00 0.00 3.58
2721 4058 6.592798 AACAGCTGTGAAAAATTTGATGTG 57.407 33.333 22.49 0.00 0.00 3.21
2722 4059 7.614124 AAAACAGCTGTGAAAAATTTGATGT 57.386 28.000 22.49 0.00 0.00 3.06
2723 4060 8.392612 AGAAAAACAGCTGTGAAAAATTTGATG 58.607 29.630 22.49 0.00 0.00 3.07
2724 4061 8.496707 AGAAAAACAGCTGTGAAAAATTTGAT 57.503 26.923 22.49 5.59 0.00 2.57
2725 4062 7.601886 TGAGAAAAACAGCTGTGAAAAATTTGA 59.398 29.630 22.49 0.00 0.00 2.69
2726 4063 7.741198 TGAGAAAAACAGCTGTGAAAAATTTG 58.259 30.769 22.49 0.00 0.00 2.32
2727 4064 7.903995 TGAGAAAAACAGCTGTGAAAAATTT 57.096 28.000 22.49 13.04 0.00 1.82
2728 4065 7.387397 TGTTGAGAAAAACAGCTGTGAAAAATT 59.613 29.630 22.49 6.77 35.16 1.82
2729 4066 6.873076 TGTTGAGAAAAACAGCTGTGAAAAAT 59.127 30.769 22.49 5.22 35.16 1.82
2730 4067 6.219473 TGTTGAGAAAAACAGCTGTGAAAAA 58.781 32.000 22.49 6.30 35.16 1.94
2731 4068 5.777802 TGTTGAGAAAAACAGCTGTGAAAA 58.222 33.333 22.49 5.75 35.16 2.29
2732 4069 5.384063 TGTTGAGAAAAACAGCTGTGAAA 57.616 34.783 22.49 4.67 35.16 2.69
2741 4078 9.650539 TGAAAAATCAATCTGTTGAGAAAAACA 57.349 25.926 0.00 0.00 46.75 2.83
2742 4079 9.906111 GTGAAAAATCAATCTGTTGAGAAAAAC 57.094 29.630 0.00 0.00 46.75 2.43
2743 4080 9.650539 TGTGAAAAATCAATCTGTTGAGAAAAA 57.349 25.926 0.00 0.00 46.75 1.94
2744 4081 9.304731 CTGTGAAAAATCAATCTGTTGAGAAAA 57.695 29.630 0.00 0.00 46.75 2.29
2745 4082 7.436080 GCTGTGAAAAATCAATCTGTTGAGAAA 59.564 33.333 0.00 0.00 46.75 2.52
2746 4083 6.919662 GCTGTGAAAAATCAATCTGTTGAGAA 59.080 34.615 0.00 0.00 46.75 2.87
2747 4084 6.263842 AGCTGTGAAAAATCAATCTGTTGAGA 59.736 34.615 0.00 0.00 46.75 3.27
2748 4085 6.444633 AGCTGTGAAAAATCAATCTGTTGAG 58.555 36.000 0.00 0.00 46.75 3.02
2750 4087 7.365741 AGTAGCTGTGAAAAATCAATCTGTTG 58.634 34.615 0.00 0.00 36.65 3.33
2751 4088 7.516198 AGTAGCTGTGAAAAATCAATCTGTT 57.484 32.000 0.00 0.00 0.00 3.16
2752 4089 7.516198 AAGTAGCTGTGAAAAATCAATCTGT 57.484 32.000 0.00 0.00 0.00 3.41
2753 4090 8.807667 AAAAGTAGCTGTGAAAAATCAATCTG 57.192 30.769 0.00 0.00 0.00 2.90
2761 4098 9.877178 TGGATTTTTAAAAGTAGCTGTGAAAAA 57.123 25.926 0.00 1.61 0.00 1.94
2763 4100 9.474920 CATGGATTTTTAAAAGTAGCTGTGAAA 57.525 29.630 0.00 0.00 0.00 2.69
2764 4101 8.087750 CCATGGATTTTTAAAAGTAGCTGTGAA 58.912 33.333 5.56 0.00 0.00 3.18
2765 4102 7.601856 CCATGGATTTTTAAAAGTAGCTGTGA 58.398 34.615 5.56 0.00 0.00 3.58
2766 4103 6.311200 GCCATGGATTTTTAAAAGTAGCTGTG 59.689 38.462 18.40 0.00 0.00 3.66
2767 4104 6.398095 GCCATGGATTTTTAAAAGTAGCTGT 58.602 36.000 18.40 0.00 0.00 4.40
2768 4105 5.812127 GGCCATGGATTTTTAAAAGTAGCTG 59.188 40.000 18.40 0.00 0.00 4.24
2769 4106 5.394115 CGGCCATGGATTTTTAAAAGTAGCT 60.394 40.000 18.40 0.00 0.00 3.32
2770 4107 4.803613 CGGCCATGGATTTTTAAAAGTAGC 59.196 41.667 18.40 0.00 0.00 3.58
2771 4108 6.202516 TCGGCCATGGATTTTTAAAAGTAG 57.797 37.500 18.40 0.00 0.00 2.57
2772 4109 6.391537 GTTCGGCCATGGATTTTTAAAAGTA 58.608 36.000 18.40 0.00 0.00 2.24
2773 4110 5.234752 GTTCGGCCATGGATTTTTAAAAGT 58.765 37.500 18.40 0.00 0.00 2.66
2774 4111 4.629634 GGTTCGGCCATGGATTTTTAAAAG 59.370 41.667 18.40 0.00 37.17 2.27
2775 4112 4.040461 TGGTTCGGCCATGGATTTTTAAAA 59.960 37.500 18.40 0.00 43.61 1.52
2776 4113 3.578716 TGGTTCGGCCATGGATTTTTAAA 59.421 39.130 18.40 0.00 43.61 1.52
2777 4114 3.165875 TGGTTCGGCCATGGATTTTTAA 58.834 40.909 18.40 0.00 43.61 1.52
2778 4115 2.808919 TGGTTCGGCCATGGATTTTTA 58.191 42.857 18.40 0.00 43.61 1.52
2779 4116 1.638529 TGGTTCGGCCATGGATTTTT 58.361 45.000 18.40 0.00 43.61 1.94
2780 4117 3.372557 TGGTTCGGCCATGGATTTT 57.627 47.368 18.40 0.00 43.61 1.82
2789 4126 4.700365 GCGCTGTTTGGTTCGGCC 62.700 66.667 0.00 0.00 34.10 6.13
2790 4127 4.700365 GGCGCTGTTTGGTTCGGC 62.700 66.667 7.64 0.00 40.08 5.54
2791 4128 4.038080 GGGCGCTGTTTGGTTCGG 62.038 66.667 7.64 0.00 0.00 4.30
2792 4129 2.343163 TTTGGGCGCTGTTTGGTTCG 62.343 55.000 7.64 0.00 0.00 3.95
2793 4130 0.597377 CTTTGGGCGCTGTTTGGTTC 60.597 55.000 7.64 0.00 0.00 3.62
2794 4131 1.040339 TCTTTGGGCGCTGTTTGGTT 61.040 50.000 7.64 0.00 0.00 3.67
2795 4132 1.454847 TCTTTGGGCGCTGTTTGGT 60.455 52.632 7.64 0.00 0.00 3.67
2796 4133 1.007387 GTCTTTGGGCGCTGTTTGG 60.007 57.895 7.64 0.00 0.00 3.28
2797 4134 1.370414 CGTCTTTGGGCGCTGTTTG 60.370 57.895 7.64 0.00 0.00 2.93
2798 4135 2.551912 CCGTCTTTGGGCGCTGTTT 61.552 57.895 7.64 0.00 0.00 2.83
2799 4136 2.978010 CCGTCTTTGGGCGCTGTT 60.978 61.111 7.64 0.00 0.00 3.16
2806 4143 0.035056 AAGATGGAGCCGTCTTTGGG 60.035 55.000 16.36 0.00 46.56 4.12
2807 4144 3.558674 AAGATGGAGCCGTCTTTGG 57.441 52.632 16.36 0.00 46.56 3.28
2829 4166 1.555967 TCACGTCTGATCCACCATCA 58.444 50.000 0.00 0.00 39.39 3.07
2830 4167 2.271800 GTTCACGTCTGATCCACCATC 58.728 52.381 0.00 0.00 0.00 3.51
2831 4168 1.623311 TGTTCACGTCTGATCCACCAT 59.377 47.619 0.00 0.00 0.00 3.55
2832 4169 1.000843 CTGTTCACGTCTGATCCACCA 59.999 52.381 0.00 0.00 0.00 4.17
2834 4171 1.673033 CCCTGTTCACGTCTGATCCAC 60.673 57.143 0.00 0.00 0.00 4.02
2835 4172 0.608130 CCCTGTTCACGTCTGATCCA 59.392 55.000 0.00 0.00 0.00 3.41
2851 4191 1.762460 CCGGAGGCACTATCACCCT 60.762 63.158 0.00 0.00 46.14 4.34
2871 4211 4.263068 GGAGAAAAGATTCAGACTCCACCA 60.263 45.833 0.00 0.00 42.11 4.17
2873 4213 4.899502 TGGAGAAAAGATTCAGACTCCAC 58.100 43.478 0.00 0.00 45.53 4.02
2878 4218 4.387256 CACGTCTGGAGAAAAGATTCAGAC 59.613 45.833 10.63 10.63 46.22 3.51
2896 4236 2.607187 CACTATCACCCTGTTCACGTC 58.393 52.381 0.00 0.00 0.00 4.34
2897 4237 1.337823 GCACTATCACCCTGTTCACGT 60.338 52.381 0.00 0.00 0.00 4.49
2898 4238 1.359848 GCACTATCACCCTGTTCACG 58.640 55.000 0.00 0.00 0.00 4.35
2899 4239 1.279271 AGGCACTATCACCCTGTTCAC 59.721 52.381 0.00 0.00 36.02 3.18
2900 4240 1.555075 GAGGCACTATCACCCTGTTCA 59.445 52.381 0.00 0.00 41.55 3.18
2901 4241 1.134371 GGAGGCACTATCACCCTGTTC 60.134 57.143 0.00 0.00 41.55 3.18
2903 4243 1.330655 CGGAGGCACTATCACCCTGT 61.331 60.000 0.00 0.00 41.55 4.00
2904 4244 1.443407 CGGAGGCACTATCACCCTG 59.557 63.158 0.00 0.00 41.55 4.45
2918 4258 1.314730 GTAGAGAGAGCCTTCCGGAG 58.685 60.000 3.34 0.00 0.00 4.63
2919 4259 0.624254 TGTAGAGAGAGCCTTCCGGA 59.376 55.000 0.00 0.00 0.00 5.14
2920 4260 1.475403 TTGTAGAGAGAGCCTTCCGG 58.525 55.000 0.00 0.00 0.00 5.14
2921 4261 3.594603 TTTTGTAGAGAGAGCCTTCCG 57.405 47.619 0.00 0.00 0.00 4.30
2922 4262 3.687212 GCTTTTTGTAGAGAGAGCCTTCC 59.313 47.826 0.00 0.00 0.00 3.46
2923 4263 3.369451 CGCTTTTTGTAGAGAGAGCCTTC 59.631 47.826 0.00 0.00 0.00 3.46
2924 4264 3.330267 CGCTTTTTGTAGAGAGAGCCTT 58.670 45.455 0.00 0.00 0.00 4.35
2925 4265 2.933056 GCGCTTTTTGTAGAGAGAGCCT 60.933 50.000 0.00 0.00 0.00 4.58
2926 4266 1.395262 GCGCTTTTTGTAGAGAGAGCC 59.605 52.381 0.00 0.00 0.00 4.70
2931 4271 4.878439 TCTAACTGCGCTTTTTGTAGAGA 58.122 39.130 9.73 0.00 0.00 3.10
2939 4279 5.701290 ACTATCACTTTCTAACTGCGCTTTT 59.299 36.000 9.73 3.89 0.00 2.27
2948 4288 7.849160 AGGTAGGGAAACTATCACTTTCTAAC 58.151 38.462 0.00 0.00 39.37 2.34
2949 4289 8.445361 AAGGTAGGGAAACTATCACTTTCTAA 57.555 34.615 0.00 0.00 39.37 2.10
2994 4420 5.560966 TCCGTTCATCCAAATTAAGCTTC 57.439 39.130 0.00 0.00 0.00 3.86
2997 4423 5.095490 CACTTCCGTTCATCCAAATTAAGC 58.905 41.667 0.00 0.00 0.00 3.09
3015 4441 8.682128 TTTAATTTGTGTCAACACTTCACTTC 57.318 30.769 13.94 0.00 46.55 3.01
3070 4497 0.535335 GTGATGGTCAGGGCGTTCTA 59.465 55.000 0.00 0.00 0.00 2.10
3118 4545 8.618702 ATGAGAGAGCTAAAAATGGATATGTG 57.381 34.615 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.