Multiple sequence alignment - TraesCS1D01G084600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G084600 chr1D 100.000 4045 0 0 1 4045 69092250 69096294 0.000000e+00 7470.0
1 TraesCS1D01G084600 chr1D 100.000 1320 0 0 4347 5666 69096596 69097915 0.000000e+00 2438.0
2 TraesCS1D01G084600 chr1D 94.798 173 4 2 3663 3830 440041377 440041205 1.210000e-66 265.0
3 TraesCS1D01G084600 chr1A 93.715 2705 116 30 781 3462 67683112 67685785 0.000000e+00 4004.0
4 TraesCS1D01G084600 chr1A 93.139 685 32 10 4347 5028 67686646 67687318 0.000000e+00 990.0
5 TraesCS1D01G084600 chr1A 95.545 202 5 2 3462 3663 67685958 67686155 2.550000e-83 320.0
6 TraesCS1D01G084600 chr1A 92.760 221 8 5 3831 4044 67686147 67686366 4.260000e-81 313.0
7 TraesCS1D01G084600 chr1B 96.261 2113 60 9 1557 3664 110604706 110606804 0.000000e+00 3446.0
8 TraesCS1D01G084600 chr1B 97.123 730 14 4 782 1509 110603983 110604707 0.000000e+00 1225.0
9 TraesCS1D01G084600 chr1B 93.816 663 23 5 4463 5125 110607344 110607988 0.000000e+00 981.0
10 TraesCS1D01G084600 chr1B 97.209 215 4 2 3831 4044 110606795 110607008 4.170000e-96 363.0
11 TraesCS1D01G084600 chr1B 98.230 113 2 0 4347 4459 110607147 110607259 1.250000e-46 198.0
12 TraesCS1D01G084600 chr1B 89.796 49 3 2 5527 5573 110608296 110608344 1.700000e-05 62.1
13 TraesCS1D01G084600 chr2B 93.462 780 49 2 4 782 561389093 561388315 0.000000e+00 1157.0
14 TraesCS1D01G084600 chr2B 93.182 176 6 3 3661 3830 358674321 358674146 2.620000e-63 254.0
15 TraesCS1D01G084600 chr2B 93.605 172 6 2 3664 3830 172219841 172220012 9.420000e-63 252.0
16 TraesCS1D01G084600 chr2B 95.122 41 2 0 737 777 132158029 132157989 1.320000e-06 65.8
17 TraesCS1D01G084600 chr2B 91.489 47 3 1 739 785 476405138 476405183 4.740000e-06 63.9
18 TraesCS1D01G084600 chr7B 92.260 801 39 2 5 782 5016011 5015211 0.000000e+00 1114.0
19 TraesCS1D01G084600 chr4A 92.985 727 36 8 56 780 738721765 738722478 0.000000e+00 1046.0
20 TraesCS1D01G084600 chr4A 93.077 130 8 1 3334 3462 592264882 592264753 7.490000e-44 189.0
21 TraesCS1D01G084600 chr4A 93.077 130 8 1 3334 3462 592602300 592602171 7.490000e-44 189.0
22 TraesCS1D01G084600 chr4A 93.077 130 8 1 3334 3462 592891420 592891291 7.490000e-44 189.0
23 TraesCS1D01G084600 chr4A 93.077 130 8 1 3334 3462 593162890 593162761 7.490000e-44 189.0
24 TraesCS1D01G084600 chr5D 92.340 718 31 11 74 789 251963836 251963141 0.000000e+00 1000.0
25 TraesCS1D01G084600 chr5D 96.591 176 6 0 2036 2211 528297785 528297960 5.550000e-75 292.0
26 TraesCS1D01G084600 chr5D 94.798 173 4 2 3663 3830 61472628 61472800 1.210000e-66 265.0
27 TraesCS1D01G084600 chr5D 95.062 162 3 2 3674 3830 284182882 284182721 3.390000e-62 250.0
28 TraesCS1D01G084600 chr5D 97.959 49 1 0 2 50 251963886 251963838 1.010000e-12 86.1
29 TraesCS1D01G084600 chr3B 86.861 411 50 4 6 414 771624891 771624483 1.860000e-124 457.0
30 TraesCS1D01G084600 chr3B 88.957 163 12 3 2801 2958 5888055 5888216 4.480000e-46 196.0
31 TraesCS1D01G084600 chr3B 92.248 129 8 2 3462 3589 703031375 703031248 1.250000e-41 182.0
32 TraesCS1D01G084600 chr3B 91.935 124 10 0 3463 3586 312149353 312149476 2.100000e-39 174.0
33 TraesCS1D01G084600 chr3B 83.660 153 22 2 4704 4856 5888242 5888391 2.130000e-29 141.0
34 TraesCS1D01G084600 chr7D 86.765 408 50 4 3 408 432750800 432751205 8.660000e-123 451.0
35 TraesCS1D01G084600 chr7D 96.591 176 6 0 2036 2211 381943959 381943784 5.550000e-75 292.0
36 TraesCS1D01G084600 chr7D 91.200 125 11 0 3462 3586 573266277 573266153 2.710000e-38 171.0
37 TraesCS1D01G084600 chr7D 79.817 218 23 5 579 782 432782690 432782900 7.650000e-29 139.0
38 TraesCS1D01G084600 chr7D 82.796 93 12 2 421 513 432751284 432751372 4.710000e-11 80.5
39 TraesCS1D01G084600 chr7D 97.222 36 0 1 34 68 189328009 189327974 6.130000e-05 60.2
40 TraesCS1D01G084600 chr7A 84.320 338 45 8 56 389 500552271 500552604 1.970000e-84 324.0
41 TraesCS1D01G084600 chr7A 97.159 176 5 0 2036 2211 708260883 708260708 1.190000e-76 298.0
42 TraesCS1D01G084600 chr7A 80.488 369 44 21 430 780 500552710 500553068 2.030000e-64 257.0
43 TraesCS1D01G084600 chr7A 93.750 128 8 0 3335 3462 5486258 5486385 5.790000e-45 193.0
44 TraesCS1D01G084600 chr7A 93.701 127 8 0 3336 3462 35007409 35007535 2.080000e-44 191.0
45 TraesCS1D01G084600 chr7A 96.721 61 2 0 3 63 500552240 500552300 1.000000e-17 102.0
46 TraesCS1D01G084600 chr2D 97.159 176 5 0 2036 2211 604429135 604428960 1.190000e-76 298.0
47 TraesCS1D01G084600 chr2D 95.000 40 2 0 738 777 80482277 80482238 4.740000e-06 63.9
48 TraesCS1D01G084600 chrUn 96.591 176 6 0 2036 2211 171037309 171037484 5.550000e-75 292.0
49 TraesCS1D01G084600 chrUn 96.591 176 6 0 2036 2211 374272936 374273111 5.550000e-75 292.0
50 TraesCS1D01G084600 chrUn 88.166 169 14 3 2801 2964 34252015 34251848 4.480000e-46 196.0
51 TraesCS1D01G084600 chrUn 88.166 169 14 3 2801 2964 309430500 309430333 4.480000e-46 196.0
52 TraesCS1D01G084600 chrUn 82.716 162 25 2 4704 4865 34251828 34251670 2.130000e-29 141.0
53 TraesCS1D01G084600 chrUn 82.716 162 25 2 4704 4865 309430313 309430155 2.130000e-29 141.0
54 TraesCS1D01G084600 chr3D 96.591 176 6 0 2036 2211 602851349 602851174 5.550000e-75 292.0
55 TraesCS1D01G084600 chr3D 93.714 175 6 2 3661 3830 364260704 364260878 2.030000e-64 257.0
56 TraesCS1D01G084600 chr3D 93.388 121 8 0 3463 3583 250915986 250916106 4.510000e-41 180.0
57 TraesCS1D01G084600 chr6B 81.183 372 34 16 430 781 707708449 707708094 3.370000e-67 267.0
58 TraesCS1D01G084600 chr6B 92.857 154 9 2 6 158 707709027 707708875 7.390000e-54 222.0
59 TraesCS1D01G084600 chr6B 92.857 126 9 0 3462 3587 414357929 414358054 3.490000e-42 183.0
60 TraesCS1D01G084600 chr4D 93.220 177 7 2 3662 3833 202760009 202759833 7.280000e-64 255.0
61 TraesCS1D01G084600 chr6D 93.491 169 5 3 3674 3837 377347149 377347316 4.380000e-61 246.0
62 TraesCS1D01G084600 chr6D 92.045 176 9 2 3661 3831 460159056 460158881 5.670000e-60 243.0
63 TraesCS1D01G084600 chr6D 92.000 50 3 1 737 785 412485145 412485096 1.020000e-07 69.4
64 TraesCS1D01G084600 chr2A 94.574 129 7 0 3334 3462 414294296 414294424 3.460000e-47 200.0
65 TraesCS1D01G084600 chr2A 93.478 46 3 0 737 782 686298925 686298970 1.020000e-07 69.4
66 TraesCS1D01G084600 chr5A 93.077 130 8 1 3334 3462 536775167 536775296 7.490000e-44 189.0
67 TraesCS1D01G084600 chr3A 87.195 164 21 0 2801 2964 8941282 8941119 2.700000e-43 187.0
68 TraesCS1D01G084600 chr3A 92.063 126 10 0 3462 3587 141950044 141950169 1.620000e-40 178.0
69 TraesCS1D01G084600 chr3A 91.935 124 10 0 3463 3586 333327893 333327770 2.100000e-39 174.0
70 TraesCS1D01G084600 chr3A 85.350 157 21 2 4704 4858 8941099 8940943 1.630000e-35 161.0
71 TraesCS1D01G084600 chr3A 91.589 107 9 0 426 532 102837469 102837575 1.270000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G084600 chr1D 69092250 69097915 5665 False 4954.000000 7470 100.000000 1 5666 2 chr1D.!!$F1 5665
1 TraesCS1D01G084600 chr1A 67683112 67687318 4206 False 1406.750000 4004 93.789750 781 5028 4 chr1A.!!$F1 4247
2 TraesCS1D01G084600 chr1B 110603983 110608344 4361 False 1045.850000 3446 95.405833 782 5573 6 chr1B.!!$F1 4791
3 TraesCS1D01G084600 chr2B 561388315 561389093 778 True 1157.000000 1157 93.462000 4 782 1 chr2B.!!$R3 778
4 TraesCS1D01G084600 chr7B 5015211 5016011 800 True 1114.000000 1114 92.260000 5 782 1 chr7B.!!$R1 777
5 TraesCS1D01G084600 chr4A 738721765 738722478 713 False 1046.000000 1046 92.985000 56 780 1 chr4A.!!$F1 724
6 TraesCS1D01G084600 chr5D 251963141 251963886 745 True 543.050000 1000 95.149500 2 789 2 chr5D.!!$R2 787
7 TraesCS1D01G084600 chr7D 432750800 432751372 572 False 265.750000 451 84.780500 3 513 2 chr7D.!!$F2 510
8 TraesCS1D01G084600 chr7A 500552240 500553068 828 False 227.666667 324 87.176333 3 780 3 chr7A.!!$F3 777
9 TraesCS1D01G084600 chr6B 707708094 707709027 933 True 244.500000 267 87.020000 6 781 2 chr6B.!!$R1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 1183 0.037734 ATCCGAACCCAGACCCAAAC 59.962 55.0 0.0 0.0 0.00 2.93 F
1323 1531 0.327000 CATCCCTGTCCCTCCCTCTT 60.327 60.0 0.0 0.0 0.00 2.85 F
1960 2170 0.744414 CGGGCATGACTTAGGGTGTG 60.744 60.0 0.0 0.0 0.00 3.82 F
3664 4069 0.109723 AAACGTGTACTGGCCACCAT 59.890 50.0 0.0 0.0 30.82 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 2013 0.251608 ACGGGCTGCAATTAACCCTT 60.252 50.0 0.50 0.0 40.45 3.95 R
2132 2344 0.449388 GAATGCTGGCTGGAAAGACG 59.551 55.0 0.00 0.0 0.00 4.18 R
3777 4182 0.032678 CCCTGCAGCTCGGTGTATAG 59.967 60.0 8.66 0.0 0.00 1.31 R
5523 6016 0.106708 TCAACCGAAGACAGCAAGCT 59.893 50.0 0.00 0.0 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 213 2.230508 TCGTCTTCAGGTCGTAGCAAAT 59.769 45.455 0.00 0.00 0.00 2.32
169 268 1.448893 CAGCAAATGGCCACCATGC 60.449 57.895 24.47 24.47 44.40 4.06
203 302 2.431942 GGCGTGGTTCATCGTCGT 60.432 61.111 0.00 0.00 0.00 4.34
206 305 1.279527 GCGTGGTTCATCGTCGTCAA 61.280 55.000 0.00 0.00 0.00 3.18
313 413 1.192793 GCGCGAGTTCACTGATAGAC 58.807 55.000 12.10 0.00 0.00 2.59
426 615 3.632604 CAGCTCCTTCTACCATTCTACGA 59.367 47.826 0.00 0.00 0.00 3.43
436 625 3.170717 ACCATTCTACGAGAGGTTCCAA 58.829 45.455 0.00 0.00 0.00 3.53
685 885 0.941542 GCCAACAACTCTGCACGTTA 59.058 50.000 0.00 0.00 0.00 3.18
686 886 1.333791 GCCAACAACTCTGCACGTTAC 60.334 52.381 0.00 0.00 0.00 2.50
792 999 8.146479 TCTAAACGTTTCCCTAAAGAAAACTC 57.854 34.615 18.42 0.00 37.49 3.01
975 1183 0.037734 ATCCGAACCCAGACCCAAAC 59.962 55.000 0.00 0.00 0.00 2.93
977 1185 1.149627 CGAACCCAGACCCAAACCA 59.850 57.895 0.00 0.00 0.00 3.67
979 1187 1.328279 GAACCCAGACCCAAACCAAG 58.672 55.000 0.00 0.00 0.00 3.61
1322 1530 1.316266 CATCCCTGTCCCTCCCTCT 59.684 63.158 0.00 0.00 0.00 3.69
1323 1531 0.327000 CATCCCTGTCCCTCCCTCTT 60.327 60.000 0.00 0.00 0.00 2.85
1359 1567 9.138596 GATAAGAAGATTTCTAGTCAGGTAGGT 57.861 37.037 0.00 0.00 39.61 3.08
1360 1568 7.800300 AAGAAGATTTCTAGTCAGGTAGGTT 57.200 36.000 0.00 0.00 39.61 3.50
1375 1583 2.279918 GTTGGCGTGGTCTGACGT 60.280 61.111 1.07 0.00 41.54 4.34
1498 1706 4.491676 CGTCTTGATAGGTTTCTTCCGAA 58.508 43.478 0.00 0.00 0.00 4.30
1518 1726 2.203252 CCATGGGCTGCTGCGTAT 60.203 61.111 2.85 3.60 40.82 3.06
1589 1797 4.124970 GAGCAATGTAGATGTGCAGATGA 58.875 43.478 0.00 0.00 40.83 2.92
1649 1857 2.268298 GGAAATTGCTGCTTGCTCATG 58.732 47.619 0.00 0.00 43.37 3.07
1651 1859 1.263356 AATTGCTGCTTGCTCATGGT 58.737 45.000 0.00 0.00 43.37 3.55
1710 1918 4.087182 TCTCTGAACCGTTTCATCCTACT 58.913 43.478 0.00 0.00 41.05 2.57
1711 1919 4.082190 TCTCTGAACCGTTTCATCCTACTG 60.082 45.833 0.00 0.00 41.05 2.74
1712 1920 3.576982 TCTGAACCGTTTCATCCTACTGT 59.423 43.478 0.00 0.00 41.05 3.55
1713 1921 4.768448 TCTGAACCGTTTCATCCTACTGTA 59.232 41.667 0.00 0.00 41.05 2.74
1714 1922 4.813027 TGAACCGTTTCATCCTACTGTAC 58.187 43.478 0.00 0.00 36.79 2.90
1732 1940 2.543777 ACATGTTAGTGACCAGCGTT 57.456 45.000 0.00 0.00 0.00 4.84
1735 1943 2.831685 TGTTAGTGACCAGCGTTGAT 57.168 45.000 0.00 0.00 0.00 2.57
1791 1999 3.423645 GGATTCGTTTTCTGCTTGAGACG 60.424 47.826 9.85 9.85 37.38 4.18
1801 2009 1.154197 GCTTGAGACGTTGGGTTACC 58.846 55.000 0.00 0.00 37.24 2.85
1803 2011 2.809299 GCTTGAGACGTTGGGTTACCTT 60.809 50.000 0.00 0.00 37.76 3.50
1804 2012 3.473625 CTTGAGACGTTGGGTTACCTTT 58.526 45.455 0.00 0.00 37.76 3.11
1805 2013 4.634199 CTTGAGACGTTGGGTTACCTTTA 58.366 43.478 0.00 0.00 37.76 1.85
1806 2014 4.686191 TGAGACGTTGGGTTACCTTTAA 57.314 40.909 0.00 0.00 37.76 1.52
1807 2015 4.634199 TGAGACGTTGGGTTACCTTTAAG 58.366 43.478 0.00 0.00 37.76 1.85
1808 2016 3.999001 GAGACGTTGGGTTACCTTTAAGG 59.001 47.826 9.81 9.81 42.49 2.69
1809 2017 3.076621 GACGTTGGGTTACCTTTAAGGG 58.923 50.000 16.10 1.27 40.58 3.95
1835 2043 0.887387 GCAGCCCGTGAGTTGGTTTA 60.887 55.000 0.00 0.00 0.00 2.01
1867 2075 9.662545 ATGATTAATTTTTGTTTGCGAAAAAGG 57.337 25.926 0.00 0.00 40.27 3.11
1960 2170 0.744414 CGGGCATGACTTAGGGTGTG 60.744 60.000 0.00 0.00 0.00 3.82
1968 2178 2.185387 GACTTAGGGTGTGGCCTTCTA 58.815 52.381 3.32 0.00 37.43 2.10
2017 2228 3.454812 TGATAGTCCCCTAAACCTTCAGC 59.545 47.826 0.00 0.00 0.00 4.26
2052 2264 4.509600 GCTGCTACGAATTGATAAGCTCTT 59.490 41.667 0.00 0.00 34.28 2.85
2054 2266 6.128956 GCTGCTACGAATTGATAAGCTCTTAG 60.129 42.308 0.00 0.00 34.28 2.18
2184 2396 3.582647 TGATTGGAGTGATGTGTGGTACT 59.417 43.478 0.00 0.00 0.00 2.73
2729 2943 6.708949 TCGGGCAATTCCTTAATTATGAGTAC 59.291 38.462 0.04 0.00 33.45 2.73
2941 3157 2.162681 AGTGTTGACTGGGCATTTAGC 58.837 47.619 0.00 0.00 44.65 3.09
3008 3228 9.474249 GTTTATGTGAGCTTTCGTATTTAGTTC 57.526 33.333 0.00 0.00 0.00 3.01
3089 3309 5.711976 CCCAACATATTTGTGAGAACCTTCT 59.288 40.000 0.00 0.00 36.03 2.85
3154 3374 3.627395 TTAGTGTCCAACTGGCCATAG 57.373 47.619 5.51 0.00 40.26 2.23
3243 3463 0.670546 ACTGCTCGGGTGAAATGTCG 60.671 55.000 0.00 0.00 0.00 4.35
3269 3489 5.620206 TGATGCCTACTTGAGAGTTGAAAA 58.380 37.500 0.00 0.00 37.33 2.29
3290 3510 5.848833 AATGGGAAGAGCAAATCATTCTC 57.151 39.130 0.00 0.00 0.00 2.87
3485 3890 4.456911 ACATAATTCCTATCATGCGCCAAG 59.543 41.667 4.18 0.00 0.00 3.61
3589 3994 0.660300 GTTGCCAAACACGCTGCTAC 60.660 55.000 0.00 0.00 36.24 3.58
3636 4041 6.568869 TGATGAAGTTAGTTTTGGTTTGGTG 58.431 36.000 0.00 0.00 0.00 4.17
3663 4068 0.757512 TAAACGTGTACTGGCCACCA 59.242 50.000 0.00 0.00 0.00 4.17
3664 4069 0.109723 AAACGTGTACTGGCCACCAT 59.890 50.000 0.00 0.00 30.82 3.55
3665 4070 0.605319 AACGTGTACTGGCCACCATG 60.605 55.000 0.00 7.17 30.82 3.66
3666 4071 1.745115 CGTGTACTGGCCACCATGG 60.745 63.158 11.19 11.19 41.55 3.66
3667 4072 1.378762 GTGTACTGGCCACCATGGT 59.621 57.895 13.00 13.00 40.46 3.55
3668 4073 0.251165 GTGTACTGGCCACCATGGTT 60.251 55.000 16.84 1.46 40.46 3.67
3669 4074 0.480690 TGTACTGGCCACCATGGTTT 59.519 50.000 16.84 0.00 40.46 3.27
3670 4075 1.133325 TGTACTGGCCACCATGGTTTT 60.133 47.619 16.84 0.00 40.46 2.43
3671 4076 1.967779 GTACTGGCCACCATGGTTTTT 59.032 47.619 16.84 0.00 40.46 1.94
3672 4077 0.758123 ACTGGCCACCATGGTTTTTG 59.242 50.000 16.84 3.51 40.46 2.44
3673 4078 1.047002 CTGGCCACCATGGTTTTTGA 58.953 50.000 16.84 0.00 40.46 2.69
3674 4079 1.001181 CTGGCCACCATGGTTTTTGAG 59.999 52.381 16.84 2.14 40.46 3.02
3675 4080 1.047801 GGCCACCATGGTTTTTGAGT 58.952 50.000 16.84 0.00 40.46 3.41
3676 4081 1.000843 GGCCACCATGGTTTTTGAGTC 59.999 52.381 16.84 0.00 40.46 3.36
3677 4082 1.335872 GCCACCATGGTTTTTGAGTCG 60.336 52.381 16.84 0.00 40.46 4.18
3678 4083 1.335872 CCACCATGGTTTTTGAGTCGC 60.336 52.381 16.84 0.00 31.35 5.19
3679 4084 1.608590 CACCATGGTTTTTGAGTCGCT 59.391 47.619 16.84 0.00 0.00 4.93
3680 4085 1.608590 ACCATGGTTTTTGAGTCGCTG 59.391 47.619 13.00 0.00 0.00 5.18
3681 4086 1.608590 CCATGGTTTTTGAGTCGCTGT 59.391 47.619 2.57 0.00 0.00 4.40
3682 4087 2.811431 CCATGGTTTTTGAGTCGCTGTA 59.189 45.455 2.57 0.00 0.00 2.74
3683 4088 3.440173 CCATGGTTTTTGAGTCGCTGTAT 59.560 43.478 2.57 0.00 0.00 2.29
3684 4089 4.634004 CCATGGTTTTTGAGTCGCTGTATA 59.366 41.667 2.57 0.00 0.00 1.47
3685 4090 5.220662 CCATGGTTTTTGAGTCGCTGTATAG 60.221 44.000 2.57 0.00 0.00 1.31
3686 4091 4.890088 TGGTTTTTGAGTCGCTGTATAGT 58.110 39.130 0.00 0.00 0.00 2.12
3687 4092 4.927425 TGGTTTTTGAGTCGCTGTATAGTC 59.073 41.667 0.00 0.00 0.00 2.59
3688 4093 4.031426 GGTTTTTGAGTCGCTGTATAGTCG 59.969 45.833 0.00 0.00 0.00 4.18
3689 4094 2.470196 TTGAGTCGCTGTATAGTCGC 57.530 50.000 0.00 0.00 0.00 5.19
3690 4095 0.661552 TGAGTCGCTGTATAGTCGCC 59.338 55.000 0.00 0.00 0.00 5.54
3691 4096 0.384477 GAGTCGCTGTATAGTCGCCG 60.384 60.000 0.00 0.00 0.00 6.46
3692 4097 0.812811 AGTCGCTGTATAGTCGCCGA 60.813 55.000 0.00 0.00 0.00 5.54
3693 4098 0.656786 GTCGCTGTATAGTCGCCGAC 60.657 60.000 9.71 9.71 0.00 4.79
3694 4099 0.812811 TCGCTGTATAGTCGCCGACT 60.813 55.000 24.55 24.55 45.54 4.18
3696 4101 1.262417 CGCTGTATAGTCGCCGACTAA 59.738 52.381 28.54 15.92 46.28 2.24
3697 4102 2.095869 CGCTGTATAGTCGCCGACTAAT 60.096 50.000 28.54 18.97 46.28 1.73
3698 4103 3.490399 GCTGTATAGTCGCCGACTAATC 58.510 50.000 28.54 22.63 46.28 1.75
3699 4104 3.734031 CTGTATAGTCGCCGACTAATCG 58.266 50.000 28.54 14.45 46.28 3.34
3700 4105 2.096069 TGTATAGTCGCCGACTAATCGC 60.096 50.000 28.54 18.43 46.28 4.58
3701 4106 0.240411 ATAGTCGCCGACTAATCGCC 59.760 55.000 28.54 0.00 46.28 5.54
3702 4107 2.419101 ATAGTCGCCGACTAATCGCCA 61.419 52.381 28.54 8.55 46.28 5.69
3703 4108 3.903286 ATAGTCGCCGACTAATCGCCAA 61.903 50.000 28.54 7.79 46.28 4.52
3704 4109 5.690984 ATAGTCGCCGACTAATCGCCAAG 62.691 52.174 28.54 0.00 46.28 3.61
3710 4115 3.806316 CGACTAATCGCCAAGTTGTTT 57.194 42.857 1.45 0.00 42.43 2.83
3711 4116 4.141855 CGACTAATCGCCAAGTTGTTTT 57.858 40.909 1.45 0.00 42.43 2.43
3712 4117 4.148891 CGACTAATCGCCAAGTTGTTTTC 58.851 43.478 1.45 0.00 42.43 2.29
3713 4118 4.473199 GACTAATCGCCAAGTTGTTTTCC 58.527 43.478 1.45 0.00 0.00 3.13
3714 4119 3.886505 ACTAATCGCCAAGTTGTTTTCCA 59.113 39.130 1.45 0.00 0.00 3.53
3715 4120 3.810310 AATCGCCAAGTTGTTTTCCAA 57.190 38.095 1.45 0.00 0.00 3.53
3716 4121 3.810310 ATCGCCAAGTTGTTTTCCAAA 57.190 38.095 1.45 0.00 34.07 3.28
3717 4122 3.594603 TCGCCAAGTTGTTTTCCAAAA 57.405 38.095 1.45 0.00 34.07 2.44
3718 4123 3.926616 TCGCCAAGTTGTTTTCCAAAAA 58.073 36.364 1.45 0.00 34.07 1.94
3719 4124 4.508662 TCGCCAAGTTGTTTTCCAAAAAT 58.491 34.783 1.45 0.00 34.07 1.82
3720 4125 4.568760 TCGCCAAGTTGTTTTCCAAAAATC 59.431 37.500 1.45 0.00 34.07 2.17
3721 4126 4.331168 CGCCAAGTTGTTTTCCAAAAATCA 59.669 37.500 1.45 0.00 34.07 2.57
3722 4127 5.502220 CGCCAAGTTGTTTTCCAAAAATCAG 60.502 40.000 1.45 0.00 34.07 2.90
3723 4128 5.220835 GCCAAGTTGTTTTCCAAAAATCAGG 60.221 40.000 1.45 0.00 34.07 3.86
3724 4129 5.296531 CCAAGTTGTTTTCCAAAAATCAGGG 59.703 40.000 1.45 0.00 34.07 4.45
3725 4130 4.450976 AGTTGTTTTCCAAAAATCAGGGC 58.549 39.130 0.00 0.00 34.07 5.19
3726 4131 3.104843 TGTTTTCCAAAAATCAGGGCG 57.895 42.857 0.00 0.00 0.00 6.13
3727 4132 2.695666 TGTTTTCCAAAAATCAGGGCGA 59.304 40.909 0.00 0.00 0.00 5.54
3728 4133 3.057019 GTTTTCCAAAAATCAGGGCGAC 58.943 45.455 0.00 0.00 0.00 5.19
3729 4134 2.286365 TTCCAAAAATCAGGGCGACT 57.714 45.000 0.00 0.00 0.00 4.18
3730 4135 1.821216 TCCAAAAATCAGGGCGACTC 58.179 50.000 0.00 0.00 0.00 3.36
3731 4136 0.447801 CCAAAAATCAGGGCGACTCG 59.552 55.000 0.00 0.00 0.00 4.18
3742 4147 3.059898 GCGACTCGCGACTATACAG 57.940 57.895 3.71 0.00 44.55 2.74
3743 4148 0.992757 GCGACTCGCGACTATACAGC 60.993 60.000 3.71 0.09 44.55 4.40
3752 4157 3.235195 GCGACTATACAGCGACTTATGG 58.765 50.000 0.00 0.00 0.00 2.74
3753 4158 3.235195 CGACTATACAGCGACTTATGGC 58.765 50.000 0.00 0.00 0.00 4.40
3754 4159 3.235195 GACTATACAGCGACTTATGGCG 58.765 50.000 0.00 0.00 34.15 5.69
3755 4160 2.882761 ACTATACAGCGACTTATGGCGA 59.117 45.455 8.25 0.00 34.15 5.54
3756 4161 2.135664 ATACAGCGACTTATGGCGAC 57.864 50.000 8.25 0.00 34.15 5.19
3757 4162 1.100510 TACAGCGACTTATGGCGACT 58.899 50.000 8.25 1.64 34.15 4.18
3758 4163 1.100510 ACAGCGACTTATGGCGACTA 58.899 50.000 8.25 0.00 34.15 2.59
3759 4164 1.681793 ACAGCGACTTATGGCGACTAT 59.318 47.619 8.25 0.00 34.15 2.12
3760 4165 2.882761 ACAGCGACTTATGGCGACTATA 59.117 45.455 8.25 0.00 34.15 1.31
3761 4166 3.235195 CAGCGACTTATGGCGACTATAC 58.765 50.000 8.25 0.00 34.15 1.47
3762 4167 2.882761 AGCGACTTATGGCGACTATACA 59.117 45.455 8.25 0.00 34.15 2.29
3763 4168 3.058155 AGCGACTTATGGCGACTATACAG 60.058 47.826 8.25 0.00 34.15 2.74
3764 4169 3.235195 CGACTTATGGCGACTATACAGC 58.765 50.000 0.00 0.00 0.00 4.40
3765 4170 3.235195 GACTTATGGCGACTATACAGCG 58.765 50.000 0.00 0.00 0.00 5.18
3766 4171 2.882761 ACTTATGGCGACTATACAGCGA 59.117 45.455 0.00 0.00 0.00 4.93
3767 4172 2.983402 TATGGCGACTATACAGCGAC 57.017 50.000 0.00 0.00 32.18 5.19
3768 4173 1.319541 ATGGCGACTATACAGCGACT 58.680 50.000 0.00 0.00 32.60 4.18
3769 4174 1.100510 TGGCGACTATACAGCGACTT 58.899 50.000 0.00 0.00 32.60 3.01
3770 4175 1.475280 TGGCGACTATACAGCGACTTT 59.525 47.619 0.00 0.00 32.60 2.66
3771 4176 2.117910 GGCGACTATACAGCGACTTTC 58.882 52.381 0.00 0.00 0.00 2.62
3772 4177 1.774085 GCGACTATACAGCGACTTTCG 59.226 52.381 0.00 0.00 43.89 3.46
3773 4178 2.790468 GCGACTATACAGCGACTTTCGT 60.790 50.000 0.00 0.00 42.81 3.85
3774 4179 3.027710 CGACTATACAGCGACTTTCGTC 58.972 50.000 0.00 0.00 42.81 4.20
3786 4191 3.349176 GACTTTCGTCGACTATACACCG 58.651 50.000 14.70 0.00 0.00 4.94
3787 4192 3.002791 ACTTTCGTCGACTATACACCGA 58.997 45.455 14.70 0.00 0.00 4.69
3788 4193 3.063180 ACTTTCGTCGACTATACACCGAG 59.937 47.826 14.70 1.50 32.65 4.63
3789 4194 0.933097 TCGTCGACTATACACCGAGC 59.067 55.000 14.70 0.00 32.65 5.03
3790 4195 0.935898 CGTCGACTATACACCGAGCT 59.064 55.000 14.70 0.00 32.65 4.09
3791 4196 1.332993 CGTCGACTATACACCGAGCTG 60.333 57.143 14.70 0.00 32.65 4.24
3792 4197 0.661552 TCGACTATACACCGAGCTGC 59.338 55.000 0.00 0.00 0.00 5.25
3793 4198 0.380733 CGACTATACACCGAGCTGCA 59.619 55.000 1.02 0.00 0.00 4.41
3794 4199 1.598183 CGACTATACACCGAGCTGCAG 60.598 57.143 10.11 10.11 0.00 4.41
3795 4200 0.747255 ACTATACACCGAGCTGCAGG 59.253 55.000 17.12 11.76 0.00 4.85
3796 4201 0.032678 CTATACACCGAGCTGCAGGG 59.967 60.000 17.12 11.00 0.00 4.45
3797 4202 2.028125 TATACACCGAGCTGCAGGGC 62.028 60.000 17.12 2.13 0.00 5.19
3804 4209 4.853050 AGCTGCAGGGCTCGCATC 62.853 66.667 17.12 0.30 38.24 3.91
3812 4217 3.567797 GGCTCGCATCGCCAAGTC 61.568 66.667 3.27 0.00 46.77 3.01
3813 4218 3.918220 GCTCGCATCGCCAAGTCG 61.918 66.667 0.00 0.00 0.00 4.18
3814 4219 3.918220 CTCGCATCGCCAAGTCGC 61.918 66.667 0.00 0.00 0.00 5.19
3822 4227 3.637714 GCCAAGTCGCGACTCAAA 58.362 55.556 39.19 0.00 41.58 2.69
3823 4228 1.938861 GCCAAGTCGCGACTCAAAA 59.061 52.632 39.19 0.00 41.58 2.44
3824 4229 0.306533 GCCAAGTCGCGACTCAAAAA 59.693 50.000 39.19 0.00 41.58 1.94
3825 4230 1.920272 GCCAAGTCGCGACTCAAAAAC 60.920 52.381 39.19 21.97 41.58 2.43
3826 4231 1.333791 CCAAGTCGCGACTCAAAAACC 60.334 52.381 39.19 10.95 41.58 3.27
3827 4232 1.597663 CAAGTCGCGACTCAAAAACCT 59.402 47.619 39.19 20.28 41.58 3.50
3828 4233 1.949465 AGTCGCGACTCAAAAACCTT 58.051 45.000 34.98 10.31 36.92 3.50
3829 4234 1.597663 AGTCGCGACTCAAAAACCTTG 59.402 47.619 34.98 0.00 36.92 3.61
3830 4235 0.306533 TCGCGACTCAAAAACCTTGC 59.693 50.000 3.71 0.00 0.00 4.01
3831 4236 0.307760 CGCGACTCAAAAACCTTGCT 59.692 50.000 0.00 0.00 0.00 3.91
3832 4237 1.758783 GCGACTCAAAAACCTTGCTG 58.241 50.000 0.00 0.00 0.00 4.41
3833 4238 1.600413 GCGACTCAAAAACCTTGCTGG 60.600 52.381 0.00 0.00 42.93 4.85
3834 4239 1.600413 CGACTCAAAAACCTTGCTGGC 60.600 52.381 0.00 0.00 40.22 4.85
3835 4240 0.752658 ACTCAAAAACCTTGCTGGCC 59.247 50.000 0.00 0.00 40.22 5.36
3836 4241 0.752054 CTCAAAAACCTTGCTGGCCA 59.248 50.000 4.71 4.71 40.22 5.36
3837 4242 0.463620 TCAAAAACCTTGCTGGCCAC 59.536 50.000 0.00 0.00 40.22 5.01
4015 4426 3.360867 TGGCTGGTTTTCAAGTTCTTGA 58.639 40.909 10.67 10.67 0.00 3.02
4040 4451 2.647299 TGCTTTAATCTGAGGGGTTGGA 59.353 45.455 0.00 0.00 0.00 3.53
4044 4455 5.572885 GCTTTAATCTGAGGGGTTGGAGTTA 60.573 44.000 0.00 0.00 0.00 2.24
4588 5080 6.809196 CAGCTCTCAGAACCGAATATAATACC 59.191 42.308 0.00 0.00 0.00 2.73
4677 5169 0.686769 ACCCTTAGGAGCGACGGAAT 60.687 55.000 0.00 0.00 36.73 3.01
4892 5385 5.163513 GTGATGTGTTGGATTGGAATGTTC 58.836 41.667 0.00 0.00 0.00 3.18
4893 5386 5.047802 GTGATGTGTTGGATTGGAATGTTCT 60.048 40.000 0.00 0.00 0.00 3.01
4908 5401 3.591196 TGTTCTTGCCACAATTATGCC 57.409 42.857 0.00 0.00 0.00 4.40
4910 5403 3.253230 GTTCTTGCCACAATTATGCCAC 58.747 45.455 0.00 0.00 0.00 5.01
4911 5404 2.523245 TCTTGCCACAATTATGCCACA 58.477 42.857 0.00 0.00 0.00 4.17
4913 5406 2.963548 TGCCACAATTATGCCACATG 57.036 45.000 0.00 0.00 0.00 3.21
4914 5407 1.134759 TGCCACAATTATGCCACATGC 60.135 47.619 0.00 0.00 41.77 4.06
4915 5408 1.807377 GCCACAATTATGCCACATGCC 60.807 52.381 0.00 0.00 40.16 4.40
4916 5409 1.758280 CCACAATTATGCCACATGCCT 59.242 47.619 0.00 0.00 40.16 4.75
5029 5522 4.510340 TCTTTTCTTCACTTAAGCGACACC 59.490 41.667 1.29 0.00 34.97 4.16
5035 5528 2.230508 TCACTTAAGCGACACCTACAGG 59.769 50.000 1.29 0.00 42.17 4.00
5042 5535 1.086696 CGACACCTACAGGGCAAATG 58.913 55.000 0.00 0.00 40.27 2.32
5059 5552 4.441356 GCAAATGGTTTTGAGTGAGTCCAA 60.441 41.667 2.78 0.00 44.11 3.53
5065 5558 4.879545 GGTTTTGAGTGAGTCCAACTAACA 59.120 41.667 0.00 0.00 31.72 2.41
5076 5569 5.445964 AGTCCAACTAACAAATGTCCAACT 58.554 37.500 0.00 0.00 0.00 3.16
5090 5583 2.305052 GTCCAACTTAGGTAGCAGGGTT 59.695 50.000 0.00 0.00 0.00 4.11
5091 5584 2.304761 TCCAACTTAGGTAGCAGGGTTG 59.695 50.000 13.23 13.23 35.33 3.77
5114 5607 3.874392 ATGCTTGTCAGTTTAATGGGC 57.126 42.857 0.00 0.00 0.00 5.36
5118 5611 0.780637 TGTCAGTTTAATGGGCCCCA 59.219 50.000 22.27 4.05 38.19 4.96
5121 5614 1.643286 TCAGTTTAATGGGCCCCATCA 59.357 47.619 22.27 0.00 44.40 3.07
5132 5625 3.329300 CCCCATCAGGCCTTTATCG 57.671 57.895 0.00 0.00 0.00 2.92
5133 5626 0.764890 CCCCATCAGGCCTTTATCGA 59.235 55.000 0.00 0.00 0.00 3.59
5134 5627 1.271054 CCCCATCAGGCCTTTATCGAG 60.271 57.143 0.00 0.00 0.00 4.04
5135 5628 1.517242 CCATCAGGCCTTTATCGAGC 58.483 55.000 0.00 0.00 0.00 5.03
5136 5629 1.202687 CCATCAGGCCTTTATCGAGCA 60.203 52.381 0.00 0.00 0.00 4.26
5137 5630 1.869767 CATCAGGCCTTTATCGAGCAC 59.130 52.381 0.00 0.00 0.00 4.40
5138 5631 1.195115 TCAGGCCTTTATCGAGCACT 58.805 50.000 0.00 0.00 0.00 4.40
5139 5632 1.134699 TCAGGCCTTTATCGAGCACTG 60.135 52.381 0.00 0.00 0.00 3.66
5140 5633 0.462759 AGGCCTTTATCGAGCACTGC 60.463 55.000 0.00 0.00 0.00 4.40
5141 5634 0.744414 GGCCTTTATCGAGCACTGCA 60.744 55.000 3.30 0.00 0.00 4.41
5142 5635 1.086696 GCCTTTATCGAGCACTGCAA 58.913 50.000 3.30 0.00 0.00 4.08
5143 5636 1.672881 GCCTTTATCGAGCACTGCAAT 59.327 47.619 3.30 0.00 0.00 3.56
5144 5637 2.098117 GCCTTTATCGAGCACTGCAATT 59.902 45.455 3.30 0.00 0.00 2.32
5145 5638 3.428045 GCCTTTATCGAGCACTGCAATTT 60.428 43.478 3.30 0.00 0.00 1.82
5146 5639 4.737054 CCTTTATCGAGCACTGCAATTTT 58.263 39.130 3.30 0.00 0.00 1.82
5147 5640 4.560035 CCTTTATCGAGCACTGCAATTTTG 59.440 41.667 3.30 0.00 0.00 2.44
5164 5657 7.755582 CAATTTTGCTAAGCATAAGGGTTAC 57.244 36.000 0.00 0.00 38.76 2.50
5165 5658 5.907866 TTTTGCTAAGCATAAGGGTTACC 57.092 39.130 0.00 0.00 38.76 2.85
5166 5659 4.855298 TTGCTAAGCATAAGGGTTACCT 57.145 40.909 0.00 0.00 44.18 3.08
5167 5660 4.417426 TGCTAAGCATAAGGGTTACCTC 57.583 45.455 0.00 0.00 39.15 3.85
5168 5661 3.135895 TGCTAAGCATAAGGGTTACCTCC 59.864 47.826 0.00 0.00 39.15 4.30
5169 5662 5.128675 TGCTAAGCATAAGGGTTACCTCCT 61.129 45.833 0.00 0.00 39.15 3.69
5170 5663 5.874818 TGCTAAGCATAAGGGTTACCTCCTA 60.875 44.000 0.00 0.00 39.15 2.94
5171 5664 7.155345 TGCTAAGCATAAGGGTTACCTCCTAT 61.155 42.308 0.00 0.00 39.15 2.57
5172 5665 9.104410 TGCTAAGCATAAGGGTTACCTCCTATG 62.104 44.444 0.00 7.33 39.15 2.23
5175 5668 2.836020 AGGGTTACCTCCTATGCCG 58.164 57.895 0.00 0.00 46.95 5.69
5176 5669 0.763223 AGGGTTACCTCCTATGCCGG 60.763 60.000 0.00 0.00 46.95 6.13
5177 5670 1.070957 GGTTACCTCCTATGCCGGC 59.929 63.158 22.73 22.73 0.00 6.13
5204 5697 4.435436 TAGCTGGTCACCGCGCAG 62.435 66.667 8.75 2.99 0.00 5.18
5217 5710 4.827087 CGCAGCCGTCTGAGCCAT 62.827 66.667 0.00 0.00 42.95 4.40
5219 5712 2.202987 CAGCCGTCTGAGCCATCC 60.203 66.667 0.00 0.00 42.95 3.51
5220 5713 2.364842 AGCCGTCTGAGCCATCCT 60.365 61.111 0.00 0.00 0.00 3.24
5221 5714 2.202987 GCCGTCTGAGCCATCCTG 60.203 66.667 0.00 0.00 0.00 3.86
5222 5715 2.202987 CCGTCTGAGCCATCCTGC 60.203 66.667 0.00 0.00 0.00 4.85
5223 5716 2.584418 CGTCTGAGCCATCCTGCG 60.584 66.667 0.00 0.00 36.02 5.18
5224 5717 2.894387 GTCTGAGCCATCCTGCGC 60.894 66.667 0.00 0.00 36.02 6.09
5225 5718 4.166888 TCTGAGCCATCCTGCGCC 62.167 66.667 4.18 0.00 36.02 6.53
5231 5724 4.776322 CCATCCTGCGCCGTTGGA 62.776 66.667 4.18 8.03 0.00 3.53
5232 5725 2.514592 CATCCTGCGCCGTTGGAT 60.515 61.111 4.18 10.17 40.85 3.41
5233 5726 2.514592 ATCCTGCGCCGTTGGATG 60.515 61.111 16.72 0.00 38.96 3.51
5241 5734 4.506255 CCGTTGGATGCCTCCCCC 62.506 72.222 5.49 0.00 41.29 5.40
5242 5735 4.856801 CGTTGGATGCCTCCCCCG 62.857 72.222 5.49 4.00 41.29 5.73
5243 5736 3.407967 GTTGGATGCCTCCCCCGA 61.408 66.667 5.49 0.00 41.29 5.14
5244 5737 2.612430 TTGGATGCCTCCCCCGAA 60.612 61.111 5.49 0.00 41.29 4.30
5245 5738 2.006415 TTGGATGCCTCCCCCGAAT 61.006 57.895 5.49 0.00 41.29 3.34
5246 5739 1.994885 TTGGATGCCTCCCCCGAATC 61.995 60.000 5.49 0.00 41.29 2.52
5247 5740 2.031163 GATGCCTCCCCCGAATCG 59.969 66.667 0.00 0.00 0.00 3.34
5248 5741 2.768344 ATGCCTCCCCCGAATCGT 60.768 61.111 0.82 0.00 0.00 3.73
5249 5742 2.717139 GATGCCTCCCCCGAATCGTC 62.717 65.000 0.82 0.00 0.00 4.20
5250 5743 3.155167 GCCTCCCCCGAATCGTCT 61.155 66.667 0.82 0.00 0.00 4.18
5251 5744 3.130227 CCTCCCCCGAATCGTCTC 58.870 66.667 0.82 0.00 0.00 3.36
5252 5745 2.499827 CCTCCCCCGAATCGTCTCC 61.500 68.421 0.82 0.00 0.00 3.71
5253 5746 1.455959 CTCCCCCGAATCGTCTCCT 60.456 63.158 0.82 0.00 0.00 3.69
5254 5747 1.001248 TCCCCCGAATCGTCTCCTT 59.999 57.895 0.82 0.00 0.00 3.36
5255 5748 0.259647 TCCCCCGAATCGTCTCCTTA 59.740 55.000 0.82 0.00 0.00 2.69
5256 5749 1.133262 TCCCCCGAATCGTCTCCTTAT 60.133 52.381 0.82 0.00 0.00 1.73
5257 5750 2.108776 TCCCCCGAATCGTCTCCTTATA 59.891 50.000 0.82 0.00 0.00 0.98
5258 5751 2.492484 CCCCCGAATCGTCTCCTTATAG 59.508 54.545 0.82 0.00 0.00 1.31
5259 5752 2.094649 CCCCGAATCGTCTCCTTATAGC 60.095 54.545 0.82 0.00 0.00 2.97
5260 5753 2.820787 CCCGAATCGTCTCCTTATAGCT 59.179 50.000 0.82 0.00 0.00 3.32
5261 5754 3.256136 CCCGAATCGTCTCCTTATAGCTT 59.744 47.826 0.82 0.00 0.00 3.74
5262 5755 4.230657 CCGAATCGTCTCCTTATAGCTTG 58.769 47.826 0.82 0.00 0.00 4.01
5263 5756 4.230657 CGAATCGTCTCCTTATAGCTTGG 58.769 47.826 0.00 0.00 0.00 3.61
5264 5757 3.669251 ATCGTCTCCTTATAGCTTGGC 57.331 47.619 0.00 0.00 0.00 4.52
5265 5758 1.687123 TCGTCTCCTTATAGCTTGGCC 59.313 52.381 0.00 0.00 0.00 5.36
5266 5759 1.412710 CGTCTCCTTATAGCTTGGCCA 59.587 52.381 0.00 0.00 0.00 5.36
5271 5764 2.307392 TCCTTATAGCTTGGCCAACACA 59.693 45.455 16.05 1.94 0.00 3.72
5273 5766 3.701040 CCTTATAGCTTGGCCAACACATT 59.299 43.478 16.05 4.10 0.00 2.71
5280 5773 0.958091 TGGCCAACACATTGCTACAC 59.042 50.000 0.61 0.00 34.17 2.90
5299 5792 4.374702 GCTGTCGTGTGCTTGCCG 62.375 66.667 0.00 0.00 0.00 5.69
5303 5796 2.661537 TCGTGTGCTTGCCGTCAG 60.662 61.111 0.00 0.00 0.00 3.51
5304 5797 2.967076 CGTGTGCTTGCCGTCAGT 60.967 61.111 0.00 0.00 0.00 3.41
5305 5798 2.939022 GTGTGCTTGCCGTCAGTC 59.061 61.111 0.00 0.00 0.00 3.51
5306 5799 2.280797 TGTGCTTGCCGTCAGTCC 60.281 61.111 0.00 0.00 0.00 3.85
5307 5800 2.031163 GTGCTTGCCGTCAGTCCT 59.969 61.111 0.00 0.00 0.00 3.85
5308 5801 2.029844 GTGCTTGCCGTCAGTCCTC 61.030 63.158 0.00 0.00 0.00 3.71
5309 5802 2.811317 GCTTGCCGTCAGTCCTCG 60.811 66.667 0.00 0.00 0.00 4.63
5337 5830 0.734253 CTGCTCGTTCGCTTGTAGCT 60.734 55.000 0.00 0.00 39.60 3.32
5338 5831 1.008875 TGCTCGTTCGCTTGTAGCTG 61.009 55.000 0.00 0.00 39.60 4.24
5339 5832 0.732880 GCTCGTTCGCTTGTAGCTGA 60.733 55.000 0.00 0.00 39.60 4.26
5340 5833 1.263776 CTCGTTCGCTTGTAGCTGAG 58.736 55.000 0.00 0.00 39.60 3.35
5341 5834 0.109272 TCGTTCGCTTGTAGCTGAGG 60.109 55.000 0.00 0.00 39.60 3.86
5342 5835 1.687494 CGTTCGCTTGTAGCTGAGGC 61.687 60.000 0.00 0.00 39.60 4.70
5343 5836 1.079127 TTCGCTTGTAGCTGAGGCC 60.079 57.895 0.00 0.00 39.60 5.19
5344 5837 2.835701 TTCGCTTGTAGCTGAGGCCG 62.836 60.000 0.00 0.00 39.60 6.13
5345 5838 2.266055 GCTTGTAGCTGAGGCCGT 59.734 61.111 0.00 0.00 38.45 5.68
5346 5839 1.811679 GCTTGTAGCTGAGGCCGTC 60.812 63.158 0.00 0.00 38.45 4.79
5347 5840 1.517257 CTTGTAGCTGAGGCCGTCG 60.517 63.158 0.00 0.00 39.73 5.12
5348 5841 2.890847 CTTGTAGCTGAGGCCGTCGG 62.891 65.000 6.99 6.99 39.73 4.79
5349 5842 4.208686 GTAGCTGAGGCCGTCGGG 62.209 72.222 14.38 0.00 39.73 5.14
5350 5843 4.753662 TAGCTGAGGCCGTCGGGT 62.754 66.667 14.38 16.52 44.74 5.28
5353 5846 4.436998 CTGAGGCCGTCGGGTGAC 62.437 72.222 14.38 0.00 41.91 3.67
5355 5848 4.736896 GAGGCCGTCGGGTGACAC 62.737 72.222 14.38 0.00 45.80 3.67
5357 5850 4.309950 GGCCGTCGGGTGACACTT 62.310 66.667 14.38 0.00 45.80 3.16
5358 5851 3.041940 GCCGTCGGGTGACACTTG 61.042 66.667 14.38 0.00 45.80 3.16
5359 5852 3.041940 CCGTCGGGTGACACTTGC 61.042 66.667 2.34 0.00 45.80 4.01
5360 5853 2.279851 CGTCGGGTGACACTTGCA 60.280 61.111 5.39 0.00 45.80 4.08
5384 5877 3.616935 CATTGCATGGAGCTCGTTG 57.383 52.632 7.83 8.83 45.94 4.10
5386 5879 0.806868 ATTGCATGGAGCTCGTTGTG 59.193 50.000 7.83 4.88 45.94 3.33
5387 5880 1.855213 TTGCATGGAGCTCGTTGTGC 61.855 55.000 18.48 18.48 45.94 4.57
5388 5881 3.044059 GCATGGAGCTCGTTGTGCC 62.044 63.158 7.83 0.00 41.15 5.01
5389 5882 1.376424 CATGGAGCTCGTTGTGCCT 60.376 57.895 7.83 0.00 0.00 4.75
5390 5883 1.078848 ATGGAGCTCGTTGTGCCTC 60.079 57.895 7.83 0.00 0.00 4.70
5391 5884 2.435059 GGAGCTCGTTGTGCCTCC 60.435 66.667 7.83 0.00 0.00 4.30
5392 5885 2.343758 GAGCTCGTTGTGCCTCCA 59.656 61.111 0.00 0.00 0.00 3.86
5393 5886 2.029844 GAGCTCGTTGTGCCTCCAC 61.030 63.158 0.00 0.00 42.40 4.02
5394 5887 3.050275 GCTCGTTGTGCCTCCACC 61.050 66.667 0.00 0.00 41.35 4.61
5395 5888 2.358737 CTCGTTGTGCCTCCACCC 60.359 66.667 0.00 0.00 41.35 4.61
5396 5889 3.901797 CTCGTTGTGCCTCCACCCC 62.902 68.421 0.00 0.00 41.35 4.95
5398 5891 3.580319 GTTGTGCCTCCACCCCCT 61.580 66.667 0.00 0.00 41.35 4.79
5399 5892 2.780924 TTGTGCCTCCACCCCCTT 60.781 61.111 0.00 0.00 41.35 3.95
5400 5893 3.145473 TTGTGCCTCCACCCCCTTG 62.145 63.158 0.00 0.00 41.35 3.61
5401 5894 4.366684 GTGCCTCCACCCCCTTGG 62.367 72.222 0.00 0.00 35.92 3.61
5404 5897 4.052518 CCTCCACCCCCTTGGCTG 62.053 72.222 0.00 0.00 37.83 4.85
5405 5898 4.748144 CTCCACCCCCTTGGCTGC 62.748 72.222 0.00 0.00 37.83 5.25
5424 5917 2.676471 GCATCGCCAGGTGGGTTT 60.676 61.111 0.00 0.00 39.65 3.27
5425 5918 2.700773 GCATCGCCAGGTGGGTTTC 61.701 63.158 0.00 0.00 39.65 2.78
5426 5919 2.046285 CATCGCCAGGTGGGTTTCC 61.046 63.158 0.00 0.00 39.65 3.13
5427 5920 2.534396 ATCGCCAGGTGGGTTTCCA 61.534 57.895 0.00 0.00 41.58 3.53
5439 5932 1.971167 GTTTCCAGCATCGCCACCA 60.971 57.895 0.00 0.00 0.00 4.17
5449 5942 4.337060 CGCCACCAGTCGTCGTCA 62.337 66.667 0.00 0.00 0.00 4.35
5453 5946 0.809385 CCACCAGTCGTCGTCATAGT 59.191 55.000 0.00 0.00 0.00 2.12
5458 5951 2.604855 CCAGTCGTCGTCATAGTATGCC 60.605 54.545 5.18 0.00 0.00 4.40
5461 5954 1.327988 CGTCGTCATAGTATGCCGCG 61.328 60.000 8.66 11.24 30.79 6.46
5483 5976 1.079405 CCGTCGCAGTACCCATTGT 60.079 57.895 0.00 0.00 0.00 2.71
5505 5998 2.914908 GCCACGCAATTCCCGTTGT 61.915 57.895 0.00 0.00 36.69 3.32
5518 6011 2.742372 GTTGTCGCCGCTCACCAT 60.742 61.111 0.00 0.00 0.00 3.55
5519 6012 2.434185 TTGTCGCCGCTCACCATC 60.434 61.111 0.00 0.00 0.00 3.51
5520 6013 4.794439 TGTCGCCGCTCACCATCG 62.794 66.667 0.00 0.00 0.00 3.84
5523 6016 2.202690 CGCCGCTCACCATCGTTA 60.203 61.111 0.00 0.00 0.00 3.18
5525 6018 2.526120 GCCGCTCACCATCGTTAGC 61.526 63.158 0.00 0.00 36.13 3.09
5529 6022 0.375106 GCTCACCATCGTTAGCTTGC 59.625 55.000 0.00 0.00 36.48 4.01
5530 6023 2.009042 GCTCACCATCGTTAGCTTGCT 61.009 52.381 0.00 0.00 36.48 3.91
5532 6025 1.001974 TCACCATCGTTAGCTTGCTGT 59.998 47.619 5.26 0.00 0.00 4.40
5533 6026 1.394917 CACCATCGTTAGCTTGCTGTC 59.605 52.381 5.26 0.00 0.00 3.51
5535 6028 2.289694 ACCATCGTTAGCTTGCTGTCTT 60.290 45.455 5.26 0.00 0.00 3.01
5536 6029 2.349886 CCATCGTTAGCTTGCTGTCTTC 59.650 50.000 5.26 0.00 0.00 2.87
5546 6039 2.325583 TGCTGTCTTCGGTTGAAACT 57.674 45.000 0.00 0.00 32.66 2.66
5558 6051 4.398044 TCGGTTGAAACTTTTTCAGAAGCT 59.602 37.500 1.87 0.00 0.00 3.74
5563 6056 5.650543 TGAAACTTTTTCAGAAGCTGGTTC 58.349 37.500 11.46 11.46 35.08 3.62
5564 6057 5.184864 TGAAACTTTTTCAGAAGCTGGTTCA 59.815 36.000 20.36 7.37 37.67 3.18
5588 6081 3.604667 CTTGGCCGCTGGTTGCAA 61.605 61.111 0.00 0.00 43.06 4.08
5590 6083 4.892965 TGGCCGCTGGTTGCAACT 62.893 61.111 27.64 0.00 43.06 3.16
5595 6088 0.929615 CCGCTGGTTGCAACTTTTTG 59.070 50.000 27.64 14.25 43.06 2.44
5610 6103 2.623878 TTTTGTGGTTGCCTCGTCTA 57.376 45.000 0.00 0.00 0.00 2.59
5611 6104 2.623878 TTTGTGGTTGCCTCGTCTAA 57.376 45.000 0.00 0.00 0.00 2.10
5613 6106 0.320374 TGTGGTTGCCTCGTCTAAGG 59.680 55.000 0.00 0.00 39.62 2.69
5614 6107 0.320697 GTGGTTGCCTCGTCTAAGGT 59.679 55.000 0.00 0.00 38.79 3.50
5615 6108 1.053424 TGGTTGCCTCGTCTAAGGTT 58.947 50.000 0.00 0.00 38.79 3.50
5616 6109 1.270625 TGGTTGCCTCGTCTAAGGTTG 60.271 52.381 0.00 0.00 38.79 3.77
5617 6110 1.001633 GGTTGCCTCGTCTAAGGTTGA 59.998 52.381 0.00 0.00 38.79 3.18
5618 6111 2.549349 GGTTGCCTCGTCTAAGGTTGAA 60.549 50.000 0.00 0.00 38.79 2.69
5619 6112 3.135994 GTTGCCTCGTCTAAGGTTGAAA 58.864 45.455 0.00 0.00 38.79 2.69
5620 6113 2.762745 TGCCTCGTCTAAGGTTGAAAC 58.237 47.619 0.00 0.00 38.79 2.78
5621 6114 2.367567 TGCCTCGTCTAAGGTTGAAACT 59.632 45.455 0.00 0.00 38.79 2.66
5622 6115 3.181458 TGCCTCGTCTAAGGTTGAAACTT 60.181 43.478 0.00 0.00 38.79 2.66
5623 6116 3.813724 GCCTCGTCTAAGGTTGAAACTTT 59.186 43.478 0.00 0.00 38.79 2.66
5624 6117 4.083961 GCCTCGTCTAAGGTTGAAACTTTC 60.084 45.833 0.00 0.00 38.79 2.62
5625 6118 5.298347 CCTCGTCTAAGGTTGAAACTTTCT 58.702 41.667 0.00 0.00 30.42 2.52
5626 6119 5.405873 CCTCGTCTAAGGTTGAAACTTTCTC 59.594 44.000 0.00 0.00 30.42 2.87
5627 6120 5.295152 TCGTCTAAGGTTGAAACTTTCTCC 58.705 41.667 0.00 5.84 30.42 3.71
5628 6121 5.054477 CGTCTAAGGTTGAAACTTTCTCCA 58.946 41.667 0.00 0.00 30.42 3.86
5644 6137 7.666623 ACTTTCTCCAGTTGAAACTTTTTCAA 58.333 30.769 9.50 9.50 37.08 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.912591 ACTTTTCTTGAATTTCTTAGTGCACG 59.087 34.615 12.01 0.00 0.00 5.34
115 213 0.249953 TTGCTACGACGGCCAGAAAA 60.250 50.000 2.24 0.00 0.00 2.29
169 268 1.020333 GCCTCTGAGTCTGCTGCAAG 61.020 60.000 3.02 0.00 0.00 4.01
179 278 0.247736 GATGAACCACGCCTCTGAGT 59.752 55.000 3.66 0.00 0.00 3.41
203 302 2.032528 CTGGAAGCCCGCAGTTGA 59.967 61.111 0.00 0.00 34.29 3.18
313 413 1.845266 CGACTCACCCATCAGAATCG 58.155 55.000 0.00 0.00 0.00 3.34
436 625 0.038159 CGACCAGCGAGAGGAAAAGT 60.038 55.000 0.00 0.00 44.57 2.66
560 750 0.954452 CTGTTTTCCTCCACACCTGC 59.046 55.000 0.00 0.00 0.00 4.85
685 885 2.516888 CCTCCCTTCACCCACGTGT 61.517 63.158 15.65 0.00 41.09 4.49
686 886 2.172483 CTCCTCCCTTCACCCACGTG 62.172 65.000 9.08 9.08 41.72 4.49
792 999 5.855740 AAAGTAACTCTCTATTCCCTCCG 57.144 43.478 0.00 0.00 0.00 4.63
1322 1530 6.940298 AGAAATCTTCTTATCGGGAAACACAA 59.060 34.615 0.00 0.00 36.36 3.33
1323 1531 6.472887 AGAAATCTTCTTATCGGGAAACACA 58.527 36.000 0.00 0.00 36.36 3.72
1359 1567 1.593209 GAACGTCAGACCACGCCAA 60.593 57.895 0.00 0.00 43.93 4.52
1360 1568 2.028484 GAACGTCAGACCACGCCA 59.972 61.111 0.00 0.00 43.93 5.69
1375 1583 0.035152 TACCAGACCTCCTACGCGAA 60.035 55.000 15.93 0.00 0.00 4.70
1518 1726 3.960102 GGAACCCAAATATCTCATTGCCA 59.040 43.478 0.00 0.00 0.00 4.92
1524 1732 4.272489 CAGCAAGGAACCCAAATATCTCA 58.728 43.478 0.00 0.00 0.00 3.27
1589 1797 0.975887 ACCAAATCGCCCAAAGCATT 59.024 45.000 0.00 0.00 44.04 3.56
1649 1857 9.016438 TCATAGGTAAACAATCTTGGTAAAACC 57.984 33.333 0.00 0.00 39.22 3.27
1679 1887 4.442375 AACGGTTCAGAGATCTACACTG 57.558 45.455 0.00 0.00 38.28 3.66
1710 1918 2.297880 ACGCTGGTCACTAACATGTACA 59.702 45.455 0.00 0.00 0.00 2.90
1711 1919 2.955614 ACGCTGGTCACTAACATGTAC 58.044 47.619 0.00 0.00 0.00 2.90
1712 1920 3.006003 TCAACGCTGGTCACTAACATGTA 59.994 43.478 0.00 0.00 0.00 2.29
1713 1921 2.143122 CAACGCTGGTCACTAACATGT 58.857 47.619 0.00 0.00 0.00 3.21
1714 1922 2.412870 TCAACGCTGGTCACTAACATG 58.587 47.619 0.00 0.00 0.00 3.21
1791 1999 7.380536 CAATTAACCCTTAAAGGTAACCCAAC 58.619 38.462 0.00 0.00 40.05 3.77
1801 2009 3.428862 CGGGCTGCAATTAACCCTTAAAG 60.429 47.826 0.50 0.00 40.45 1.85
1803 2011 2.096248 CGGGCTGCAATTAACCCTTAA 58.904 47.619 0.50 0.00 40.45 1.85
1804 2012 1.004979 ACGGGCTGCAATTAACCCTTA 59.995 47.619 0.50 0.00 40.45 2.69
1805 2013 0.251608 ACGGGCTGCAATTAACCCTT 60.252 50.000 0.50 0.00 40.45 3.95
1806 2014 0.965363 CACGGGCTGCAATTAACCCT 60.965 55.000 0.50 0.00 40.45 4.34
1807 2015 0.963355 TCACGGGCTGCAATTAACCC 60.963 55.000 0.50 0.00 39.12 4.11
1808 2016 0.451783 CTCACGGGCTGCAATTAACC 59.548 55.000 0.50 0.00 0.00 2.85
1809 2017 1.165270 ACTCACGGGCTGCAATTAAC 58.835 50.000 0.50 0.00 0.00 2.01
1835 2043 7.605691 TCGCAAACAAAAATTAATCATCCCAAT 59.394 29.630 0.00 0.00 0.00 3.16
2017 2228 2.362397 TCGTAGCAGCTTATTGGAGGAG 59.638 50.000 0.00 0.00 0.00 3.69
2052 2264 1.742308 AGGTTTCCCTTCCTGCACTA 58.258 50.000 0.00 0.00 38.13 2.74
2132 2344 0.449388 GAATGCTGGCTGGAAAGACG 59.551 55.000 0.00 0.00 0.00 4.18
2184 2396 3.642377 CACCATCAATTGCATTATCCCCA 59.358 43.478 0.00 0.00 0.00 4.96
2729 2943 3.261580 TGACAAACTATGATGCCTGTCG 58.738 45.455 0.00 0.00 36.76 4.35
2941 3157 4.452586 TCTCTGTTTGACAGGGCCACTG 62.453 54.545 16.92 16.92 46.17 3.66
3243 3463 1.484240 ACTCTCAAGTAGGCATCAGGC 59.516 52.381 0.00 0.00 36.26 4.85
3269 3489 4.863548 TGAGAATGATTTGCTCTTCCCAT 58.136 39.130 0.00 0.00 0.00 4.00
3416 3648 4.423275 TCCCTTATGAATTCCCAATCCCAT 59.577 41.667 2.27 0.00 0.00 4.00
3417 3649 3.796694 TCCCTTATGAATTCCCAATCCCA 59.203 43.478 2.27 0.00 0.00 4.37
3485 3890 5.595952 AGTCATTTTATTCCCAATCCTCTGC 59.404 40.000 0.00 0.00 0.00 4.26
3589 3994 7.632721 TCAAACTAGGTTTAGCAAACTTAACG 58.367 34.615 0.00 0.00 41.14 3.18
3636 4041 3.850740 GCCAGTACACGTTTAACCAAAGC 60.851 47.826 0.00 0.00 0.00 3.51
3663 4068 5.488341 ACTATACAGCGACTCAAAAACCAT 58.512 37.500 0.00 0.00 0.00 3.55
3664 4069 4.890088 ACTATACAGCGACTCAAAAACCA 58.110 39.130 0.00 0.00 0.00 3.67
3665 4070 4.031426 CGACTATACAGCGACTCAAAAACC 59.969 45.833 0.00 0.00 0.00 3.27
3666 4071 4.490479 GCGACTATACAGCGACTCAAAAAC 60.490 45.833 0.00 0.00 0.00 2.43
3667 4072 3.611113 GCGACTATACAGCGACTCAAAAA 59.389 43.478 0.00 0.00 0.00 1.94
3668 4073 3.176708 GCGACTATACAGCGACTCAAAA 58.823 45.455 0.00 0.00 0.00 2.44
3669 4074 2.479049 GGCGACTATACAGCGACTCAAA 60.479 50.000 0.00 0.00 0.00 2.69
3670 4075 1.065102 GGCGACTATACAGCGACTCAA 59.935 52.381 0.00 0.00 0.00 3.02
3671 4076 0.661552 GGCGACTATACAGCGACTCA 59.338 55.000 0.00 0.00 0.00 3.41
3672 4077 0.384477 CGGCGACTATACAGCGACTC 60.384 60.000 0.00 0.00 30.19 3.36
3673 4078 0.812811 TCGGCGACTATACAGCGACT 60.813 55.000 4.99 0.00 30.19 4.18
3674 4079 0.656786 GTCGGCGACTATACAGCGAC 60.657 60.000 31.15 1.70 0.00 5.19
3675 4080 0.812811 AGTCGGCGACTATACAGCGA 60.813 55.000 38.49 0.00 41.51 4.93
3676 4081 0.863799 TAGTCGGCGACTATACAGCG 59.136 55.000 37.84 0.00 41.51 5.18
3677 4082 3.490399 GATTAGTCGGCGACTATACAGC 58.510 50.000 40.30 28.40 43.45 4.40
3678 4083 3.734031 CGATTAGTCGGCGACTATACAG 58.266 50.000 40.30 28.83 43.45 2.74
3679 4084 3.800929 CGATTAGTCGGCGACTATACA 57.199 47.619 40.30 29.65 43.45 2.29
3690 4095 8.637950 TTGGAAAACAACTTGGCGATTAGTCG 62.638 42.308 2.85 2.85 41.60 4.18
3691 4096 4.023536 TGGAAAACAACTTGGCGATTAGTC 60.024 41.667 0.00 0.00 0.00 2.59
3692 4097 3.886505 TGGAAAACAACTTGGCGATTAGT 59.113 39.130 0.00 0.00 0.00 2.24
3693 4098 4.497473 TGGAAAACAACTTGGCGATTAG 57.503 40.909 0.00 0.00 0.00 1.73
3694 4099 4.920640 TTGGAAAACAACTTGGCGATTA 57.079 36.364 0.00 0.00 33.18 1.75
3695 4100 3.810310 TTGGAAAACAACTTGGCGATT 57.190 38.095 0.00 0.00 33.18 3.34
3696 4101 3.810310 TTTGGAAAACAACTTGGCGAT 57.190 38.095 0.00 0.00 39.19 4.58
3697 4102 3.594603 TTTTGGAAAACAACTTGGCGA 57.405 38.095 0.00 0.00 39.19 5.54
3698 4103 4.331168 TGATTTTTGGAAAACAACTTGGCG 59.669 37.500 0.00 0.00 39.19 5.69
3699 4104 5.220835 CCTGATTTTTGGAAAACAACTTGGC 60.221 40.000 0.00 0.00 39.19 4.52
3700 4105 5.296531 CCCTGATTTTTGGAAAACAACTTGG 59.703 40.000 0.00 0.00 39.19 3.61
3701 4106 5.220835 GCCCTGATTTTTGGAAAACAACTTG 60.221 40.000 0.00 0.00 39.19 3.16
3702 4107 4.881273 GCCCTGATTTTTGGAAAACAACTT 59.119 37.500 0.00 0.00 39.19 2.66
3703 4108 4.450976 GCCCTGATTTTTGGAAAACAACT 58.549 39.130 0.00 0.00 39.19 3.16
3704 4109 3.247411 CGCCCTGATTTTTGGAAAACAAC 59.753 43.478 0.00 0.00 39.19 3.32
3705 4110 3.133003 TCGCCCTGATTTTTGGAAAACAA 59.867 39.130 0.00 0.00 37.28 2.83
3706 4111 2.695666 TCGCCCTGATTTTTGGAAAACA 59.304 40.909 0.00 0.00 0.00 2.83
3707 4112 3.057019 GTCGCCCTGATTTTTGGAAAAC 58.943 45.455 0.00 0.00 0.00 2.43
3708 4113 2.962421 AGTCGCCCTGATTTTTGGAAAA 59.038 40.909 0.00 0.00 0.00 2.29
3709 4114 2.556622 GAGTCGCCCTGATTTTTGGAAA 59.443 45.455 0.00 0.00 0.00 3.13
3710 4115 2.159382 GAGTCGCCCTGATTTTTGGAA 58.841 47.619 0.00 0.00 0.00 3.53
3711 4116 1.821216 GAGTCGCCCTGATTTTTGGA 58.179 50.000 0.00 0.00 0.00 3.53
3712 4117 0.447801 CGAGTCGCCCTGATTTTTGG 59.552 55.000 0.00 0.00 0.00 3.28
3713 4118 3.975992 CGAGTCGCCCTGATTTTTG 57.024 52.632 0.00 0.00 0.00 2.44
3725 4130 3.059898 GCTGTATAGTCGCGAGTCG 57.940 57.895 21.77 8.54 40.15 4.18
3731 4136 3.235195 CCATAAGTCGCTGTATAGTCGC 58.765 50.000 0.00 0.00 0.00 5.19
3732 4137 3.235195 GCCATAAGTCGCTGTATAGTCG 58.765 50.000 0.00 0.00 0.00 4.18
3733 4138 3.058432 TCGCCATAAGTCGCTGTATAGTC 60.058 47.826 0.00 0.00 0.00 2.59
3734 4139 2.882761 TCGCCATAAGTCGCTGTATAGT 59.117 45.455 0.00 0.00 0.00 2.12
3735 4140 3.058155 AGTCGCCATAAGTCGCTGTATAG 60.058 47.826 0.00 0.00 0.00 1.31
3736 4141 2.882761 AGTCGCCATAAGTCGCTGTATA 59.117 45.455 0.00 0.00 0.00 1.47
3737 4142 1.681793 AGTCGCCATAAGTCGCTGTAT 59.318 47.619 0.00 0.00 0.00 2.29
3738 4143 1.100510 AGTCGCCATAAGTCGCTGTA 58.899 50.000 0.00 0.00 0.00 2.74
3739 4144 1.100510 TAGTCGCCATAAGTCGCTGT 58.899 50.000 0.00 0.00 0.00 4.40
3740 4145 2.423926 ATAGTCGCCATAAGTCGCTG 57.576 50.000 0.00 0.00 0.00 5.18
3741 4146 2.882761 TGTATAGTCGCCATAAGTCGCT 59.117 45.455 0.00 0.00 0.00 4.93
3742 4147 3.235195 CTGTATAGTCGCCATAAGTCGC 58.765 50.000 0.00 0.00 0.00 5.19
3743 4148 3.235195 GCTGTATAGTCGCCATAAGTCG 58.765 50.000 0.00 0.00 0.00 4.18
3744 4149 3.058432 TCGCTGTATAGTCGCCATAAGTC 60.058 47.826 0.00 0.00 0.00 3.01
3745 4150 2.882761 TCGCTGTATAGTCGCCATAAGT 59.117 45.455 0.00 0.00 0.00 2.24
3746 4151 3.058155 AGTCGCTGTATAGTCGCCATAAG 60.058 47.826 0.00 0.00 0.00 1.73
3747 4152 2.882761 AGTCGCTGTATAGTCGCCATAA 59.117 45.455 0.00 0.00 0.00 1.90
3748 4153 2.501261 AGTCGCTGTATAGTCGCCATA 58.499 47.619 0.00 0.00 0.00 2.74
3749 4154 1.319541 AGTCGCTGTATAGTCGCCAT 58.680 50.000 0.00 0.00 0.00 4.40
3750 4155 1.100510 AAGTCGCTGTATAGTCGCCA 58.899 50.000 0.00 0.00 0.00 5.69
3751 4156 2.117910 GAAAGTCGCTGTATAGTCGCC 58.882 52.381 0.00 0.00 0.00 5.54
3752 4157 1.774085 CGAAAGTCGCTGTATAGTCGC 59.226 52.381 0.00 0.00 31.14 5.19
3753 4158 3.048942 ACGAAAGTCGCTGTATAGTCG 57.951 47.619 0.00 0.00 45.12 4.18
3767 4172 3.605406 CTCGGTGTATAGTCGACGAAAG 58.395 50.000 10.46 0.00 0.00 2.62
3768 4173 2.223112 GCTCGGTGTATAGTCGACGAAA 60.223 50.000 10.46 0.00 0.00 3.46
3769 4174 1.328680 GCTCGGTGTATAGTCGACGAA 59.671 52.381 10.46 2.69 0.00 3.85
3770 4175 0.933097 GCTCGGTGTATAGTCGACGA 59.067 55.000 10.46 5.12 0.00 4.20
3771 4176 0.935898 AGCTCGGTGTATAGTCGACG 59.064 55.000 10.46 0.00 0.00 5.12
3772 4177 1.597445 GCAGCTCGGTGTATAGTCGAC 60.597 57.143 7.70 7.70 0.00 4.20
3773 4178 0.661552 GCAGCTCGGTGTATAGTCGA 59.338 55.000 0.00 0.00 0.00 4.20
3774 4179 0.380733 TGCAGCTCGGTGTATAGTCG 59.619 55.000 0.00 0.00 0.00 4.18
3775 4180 1.269309 CCTGCAGCTCGGTGTATAGTC 60.269 57.143 8.66 0.00 0.00 2.59
3776 4181 0.747255 CCTGCAGCTCGGTGTATAGT 59.253 55.000 8.66 0.00 0.00 2.12
3777 4182 0.032678 CCCTGCAGCTCGGTGTATAG 59.967 60.000 8.66 0.00 0.00 1.31
3778 4183 2.028125 GCCCTGCAGCTCGGTGTATA 62.028 60.000 8.66 0.00 0.00 1.47
3779 4184 2.903357 CCCTGCAGCTCGGTGTAT 59.097 61.111 8.66 0.00 0.00 2.29
3780 4185 4.082523 GCCCTGCAGCTCGGTGTA 62.083 66.667 8.66 0.00 0.00 2.90
3787 4192 4.853050 GATGCGAGCCCTGCAGCT 62.853 66.667 8.66 3.63 46.98 4.24
3796 4201 3.918220 CGACTTGGCGATGCGAGC 61.918 66.667 0.00 0.00 0.00 5.03
3797 4202 3.918220 GCGACTTGGCGATGCGAG 61.918 66.667 0.00 0.00 0.00 5.03
3805 4210 0.306533 TTTTTGAGTCGCGACTTGGC 59.693 50.000 39.38 27.60 42.66 4.52
3806 4211 1.333791 GGTTTTTGAGTCGCGACTTGG 60.334 52.381 39.38 0.00 42.66 3.61
3807 4212 1.597663 AGGTTTTTGAGTCGCGACTTG 59.402 47.619 39.38 0.00 42.66 3.16
3808 4213 1.949465 AGGTTTTTGAGTCGCGACTT 58.051 45.000 39.38 24.60 42.66 3.01
3809 4214 1.597663 CAAGGTTTTTGAGTCGCGACT 59.402 47.619 39.89 39.89 45.84 4.18
3810 4215 1.920272 GCAAGGTTTTTGAGTCGCGAC 60.920 52.381 31.30 31.30 0.00 5.19
3811 4216 0.306533 GCAAGGTTTTTGAGTCGCGA 59.693 50.000 3.71 3.71 0.00 5.87
3812 4217 0.307760 AGCAAGGTTTTTGAGTCGCG 59.692 50.000 0.00 0.00 0.00 5.87
3813 4218 1.600413 CCAGCAAGGTTTTTGAGTCGC 60.600 52.381 0.00 0.00 0.00 5.19
3814 4219 1.600413 GCCAGCAAGGTTTTTGAGTCG 60.600 52.381 0.00 0.00 40.61 4.18
3815 4220 1.269778 GGCCAGCAAGGTTTTTGAGTC 60.270 52.381 0.00 0.00 40.61 3.36
3816 4221 0.752658 GGCCAGCAAGGTTTTTGAGT 59.247 50.000 0.00 0.00 40.61 3.41
3817 4222 0.752054 TGGCCAGCAAGGTTTTTGAG 59.248 50.000 0.00 0.00 40.61 3.02
3818 4223 0.463620 GTGGCCAGCAAGGTTTTTGA 59.536 50.000 5.11 0.00 40.61 2.69
3819 4224 0.532640 GGTGGCCAGCAAGGTTTTTG 60.533 55.000 29.70 0.00 40.61 2.44
3820 4225 0.980231 TGGTGGCCAGCAAGGTTTTT 60.980 50.000 34.47 0.00 40.61 1.94
3821 4226 0.980231 TTGGTGGCCAGCAAGGTTTT 60.980 50.000 39.41 0.00 43.00 2.43
3822 4227 1.382420 TTGGTGGCCAGCAAGGTTT 60.382 52.632 39.41 0.00 43.00 3.27
3823 4228 2.281767 TTGGTGGCCAGCAAGGTT 59.718 55.556 39.41 0.00 43.00 3.50
3827 4232 0.685785 TTTCAGTTGGTGGCCAGCAA 60.686 50.000 39.41 39.41 45.29 3.91
3828 4233 0.685785 TTTTCAGTTGGTGGCCAGCA 60.686 50.000 33.13 33.13 37.20 4.41
3829 4234 0.249447 GTTTTCAGTTGGTGGCCAGC 60.249 55.000 28.15 28.15 33.81 4.85
3830 4235 0.389025 GGTTTTCAGTTGGTGGCCAG 59.611 55.000 5.11 0.00 33.81 4.85
3831 4236 0.324738 TGGTTTTCAGTTGGTGGCCA 60.325 50.000 0.00 0.00 0.00 5.36
3832 4237 0.104120 GTGGTTTTCAGTTGGTGGCC 59.896 55.000 0.00 0.00 0.00 5.36
3833 4238 0.104120 GGTGGTTTTCAGTTGGTGGC 59.896 55.000 0.00 0.00 0.00 5.01
3834 4239 1.479709 TGGTGGTTTTCAGTTGGTGG 58.520 50.000 0.00 0.00 0.00 4.61
3835 4240 3.601443 TTTGGTGGTTTTCAGTTGGTG 57.399 42.857 0.00 0.00 0.00 4.17
3836 4241 3.772025 TGATTTGGTGGTTTTCAGTTGGT 59.228 39.130 0.00 0.00 0.00 3.67
3837 4242 4.399004 TGATTTGGTGGTTTTCAGTTGG 57.601 40.909 0.00 0.00 0.00 3.77
3937 4344 9.256228 TCAAGAGTTCAGAAGGTACATAACTAT 57.744 33.333 0.00 0.00 0.00 2.12
3962 4369 6.349300 TCTTCTTGGGATTGTACTAAGCATC 58.651 40.000 0.00 0.00 0.00 3.91
4015 4426 5.046376 CCAACCCCTCAGATTAAAGCATTTT 60.046 40.000 0.00 0.00 40.09 1.82
4349 4760 6.432403 TGGCCAAAATTTAACTGAAATCCT 57.568 33.333 0.61 0.00 36.71 3.24
4588 5080 7.011389 TCTGAAATGAACACAGTACAAACTCAG 59.989 37.037 0.00 0.00 31.97 3.35
4677 5169 2.734755 AATCCCCATGATTCTCGCAA 57.265 45.000 0.00 0.00 39.56 4.85
4908 5401 3.448301 ACAAATTACCCATCAGGCATGTG 59.552 43.478 0.00 0.00 40.58 3.21
4910 5403 5.535783 TGATACAAATTACCCATCAGGCATG 59.464 40.000 0.00 0.00 40.58 4.06
4911 5404 5.704354 TGATACAAATTACCCATCAGGCAT 58.296 37.500 0.00 0.00 40.58 4.40
4913 5406 6.655078 AATGATACAAATTACCCATCAGGC 57.345 37.500 0.00 0.00 40.58 4.85
4963 5456 7.101652 AGTCTATCGAATAAGTTGAGCAGAA 57.898 36.000 0.00 0.00 0.00 3.02
4979 5472 4.156922 ACAGAAGTCACTCCAAGTCTATCG 59.843 45.833 0.00 0.00 0.00 2.92
4989 5482 7.089770 AGAAAAGAAAAACAGAAGTCACTCC 57.910 36.000 0.00 0.00 0.00 3.85
4990 5483 8.237267 TGAAGAAAAGAAAAACAGAAGTCACTC 58.763 33.333 0.00 0.00 0.00 3.51
4991 5484 8.023706 GTGAAGAAAAGAAAAACAGAAGTCACT 58.976 33.333 0.00 0.00 0.00 3.41
4992 5485 8.023706 AGTGAAGAAAAGAAAAACAGAAGTCAC 58.976 33.333 0.00 0.00 0.00 3.67
4993 5486 8.110860 AGTGAAGAAAAGAAAAACAGAAGTCA 57.889 30.769 0.00 0.00 0.00 3.41
5029 5522 3.573967 ACTCAAAACCATTTGCCCTGTAG 59.426 43.478 0.00 0.00 44.52 2.74
5035 5528 3.552890 GGACTCACTCAAAACCATTTGCC 60.553 47.826 0.00 0.00 44.52 4.52
5042 5535 4.879545 TGTTAGTTGGACTCACTCAAAACC 59.120 41.667 0.00 0.00 0.00 3.27
5059 5552 6.653740 GCTACCTAAGTTGGACATTTGTTAGT 59.346 38.462 0.00 0.00 0.00 2.24
5065 5558 4.567747 CCCTGCTACCTAAGTTGGACATTT 60.568 45.833 0.00 0.00 0.00 2.32
5076 5569 2.171870 GCATACCAACCCTGCTACCTAA 59.828 50.000 0.00 0.00 33.15 2.69
5090 5583 4.704540 CCCATTAAACTGACAAGCATACCA 59.295 41.667 0.00 0.00 0.00 3.25
5091 5584 4.440112 GCCCATTAAACTGACAAGCATACC 60.440 45.833 0.00 0.00 0.00 2.73
5099 5592 0.780637 TGGGGCCCATTAAACTGACA 59.219 50.000 24.76 4.81 0.00 3.58
5114 5607 0.764890 TCGATAAAGGCCTGATGGGG 59.235 55.000 5.69 0.00 35.12 4.96
5118 5611 1.765314 AGTGCTCGATAAAGGCCTGAT 59.235 47.619 5.69 2.18 0.00 2.90
5121 5614 0.462759 GCAGTGCTCGATAAAGGCCT 60.463 55.000 8.18 0.00 0.00 5.19
5125 5618 5.675778 CAAAATTGCAGTGCTCGATAAAG 57.324 39.130 17.60 0.00 0.00 1.85
5140 5633 6.756542 GGTAACCCTTATGCTTAGCAAAATTG 59.243 38.462 12.08 2.94 43.62 2.32
5141 5634 6.667848 AGGTAACCCTTATGCTTAGCAAAATT 59.332 34.615 12.08 0.00 39.33 1.82
5142 5635 6.194967 AGGTAACCCTTATGCTTAGCAAAAT 58.805 36.000 12.08 0.00 39.33 1.82
5143 5636 5.576128 AGGTAACCCTTATGCTTAGCAAAA 58.424 37.500 12.08 0.00 39.33 2.44
5144 5637 5.187621 AGGTAACCCTTATGCTTAGCAAA 57.812 39.130 12.08 6.34 39.33 3.68
5145 5638 4.384868 GGAGGTAACCCTTATGCTTAGCAA 60.385 45.833 12.08 0.00 41.46 3.91
5146 5639 3.135895 GGAGGTAACCCTTATGCTTAGCA 59.864 47.826 10.09 10.09 42.86 3.49
5147 5640 3.391626 AGGAGGTAACCCTTATGCTTAGC 59.608 47.826 0.00 0.00 42.86 3.09
5148 5641 6.702329 CATAGGAGGTAACCCTTATGCTTAG 58.298 44.000 0.00 0.00 42.86 2.18
5149 5642 5.012768 GCATAGGAGGTAACCCTTATGCTTA 59.987 44.000 18.70 0.67 42.86 3.09
5150 5643 4.202472 GCATAGGAGGTAACCCTTATGCTT 60.202 45.833 18.70 0.00 42.86 3.91
5151 5644 3.328050 GCATAGGAGGTAACCCTTATGCT 59.672 47.826 18.70 2.65 42.86 3.79
5152 5645 3.559384 GGCATAGGAGGTAACCCTTATGC 60.559 52.174 18.19 18.19 42.86 3.14
5153 5646 3.306780 CGGCATAGGAGGTAACCCTTATG 60.307 52.174 0.00 5.77 42.86 1.90
5154 5647 2.904434 CGGCATAGGAGGTAACCCTTAT 59.096 50.000 0.00 0.00 42.86 1.73
5155 5648 2.322658 CGGCATAGGAGGTAACCCTTA 58.677 52.381 0.00 0.00 42.86 2.69
5156 5649 1.129058 CGGCATAGGAGGTAACCCTT 58.871 55.000 0.00 0.00 42.86 3.95
5157 5650 0.763223 CCGGCATAGGAGGTAACCCT 60.763 60.000 0.00 0.00 46.66 4.34
5158 5651 1.752833 CCGGCATAGGAGGTAACCC 59.247 63.158 0.00 0.00 37.17 4.11
5159 5652 1.070957 GCCGGCATAGGAGGTAACC 59.929 63.158 24.80 0.00 37.17 2.85
5160 5653 1.300697 CGCCGGCATAGGAGGTAAC 60.301 63.158 28.98 0.00 0.00 2.50
5161 5654 3.134879 CGCCGGCATAGGAGGTAA 58.865 61.111 28.98 0.00 0.00 2.85
5162 5655 3.612681 GCGCCGGCATAGGAGGTA 61.613 66.667 28.98 0.00 39.62 3.08
5201 5694 2.894387 GATGGCTCAGACGGCTGC 60.894 66.667 15.33 1.67 42.01 5.25
5202 5695 2.202987 GGATGGCTCAGACGGCTG 60.203 66.667 13.65 13.65 43.67 4.85
5204 5697 2.202987 CAGGATGGCTCAGACGGC 60.203 66.667 0.00 0.00 0.00 5.68
5205 5698 2.202987 GCAGGATGGCTCAGACGG 60.203 66.667 0.00 0.00 35.86 4.79
5206 5699 2.584418 CGCAGGATGGCTCAGACG 60.584 66.667 0.00 0.00 35.86 4.18
5207 5700 2.894387 GCGCAGGATGGCTCAGAC 60.894 66.667 0.30 0.00 35.86 3.51
5208 5701 4.166888 GGCGCAGGATGGCTCAGA 62.167 66.667 10.83 0.00 35.86 3.27
5229 5722 2.432123 GATTCGGGGGAGGCATCC 59.568 66.667 9.46 9.46 45.85 3.51
5230 5723 2.031163 CGATTCGGGGGAGGCATC 59.969 66.667 0.00 0.00 0.00 3.91
5231 5724 2.768344 ACGATTCGGGGGAGGCAT 60.768 61.111 11.29 0.00 0.00 4.40
5232 5725 3.467226 GACGATTCGGGGGAGGCA 61.467 66.667 11.29 0.00 0.00 4.75
5233 5726 3.153270 GAGACGATTCGGGGGAGGC 62.153 68.421 11.29 0.00 0.00 4.70
5234 5727 2.499827 GGAGACGATTCGGGGGAGG 61.500 68.421 11.29 0.00 0.00 4.30
5235 5728 1.043673 AAGGAGACGATTCGGGGGAG 61.044 60.000 11.29 0.00 0.00 4.30
5236 5729 0.259647 TAAGGAGACGATTCGGGGGA 59.740 55.000 11.29 0.00 0.00 4.81
5237 5730 1.339097 ATAAGGAGACGATTCGGGGG 58.661 55.000 11.29 0.00 0.00 5.40
5238 5731 2.094649 GCTATAAGGAGACGATTCGGGG 60.095 54.545 11.29 0.00 0.00 5.73
5239 5732 2.820787 AGCTATAAGGAGACGATTCGGG 59.179 50.000 11.29 0.00 0.00 5.14
5240 5733 4.230657 CAAGCTATAAGGAGACGATTCGG 58.769 47.826 11.29 0.00 0.00 4.30
5241 5734 4.230657 CCAAGCTATAAGGAGACGATTCG 58.769 47.826 4.14 4.14 0.00 3.34
5242 5735 3.991121 GCCAAGCTATAAGGAGACGATTC 59.009 47.826 0.00 0.00 0.00 2.52
5243 5736 3.244249 GGCCAAGCTATAAGGAGACGATT 60.244 47.826 0.00 0.00 0.00 3.34
5244 5737 2.300437 GGCCAAGCTATAAGGAGACGAT 59.700 50.000 0.00 0.00 0.00 3.73
5245 5738 1.687123 GGCCAAGCTATAAGGAGACGA 59.313 52.381 0.00 0.00 0.00 4.20
5246 5739 1.412710 TGGCCAAGCTATAAGGAGACG 59.587 52.381 0.61 0.00 0.00 4.18
5247 5740 3.206964 GTTGGCCAAGCTATAAGGAGAC 58.793 50.000 21.21 0.00 0.00 3.36
5248 5741 2.843730 TGTTGGCCAAGCTATAAGGAGA 59.156 45.455 21.21 0.00 0.00 3.71
5249 5742 2.945668 GTGTTGGCCAAGCTATAAGGAG 59.054 50.000 21.21 0.00 0.00 3.69
5250 5743 2.307392 TGTGTTGGCCAAGCTATAAGGA 59.693 45.455 21.21 0.00 0.00 3.36
5251 5744 2.722094 TGTGTTGGCCAAGCTATAAGG 58.278 47.619 21.21 0.00 0.00 2.69
5252 5745 4.675510 CAATGTGTTGGCCAAGCTATAAG 58.324 43.478 21.21 2.69 0.00 1.73
5253 5746 3.119173 GCAATGTGTTGGCCAAGCTATAA 60.119 43.478 21.21 1.80 35.83 0.98
5254 5747 2.426738 GCAATGTGTTGGCCAAGCTATA 59.573 45.455 21.21 7.33 35.83 1.31
5255 5748 1.205417 GCAATGTGTTGGCCAAGCTAT 59.795 47.619 21.21 10.42 35.83 2.97
5256 5749 0.602562 GCAATGTGTTGGCCAAGCTA 59.397 50.000 21.21 8.27 35.83 3.32
5257 5750 1.117142 AGCAATGTGTTGGCCAAGCT 61.117 50.000 21.21 19.87 35.83 3.74
5258 5751 0.602562 TAGCAATGTGTTGGCCAAGC 59.397 50.000 21.21 17.73 35.83 4.01
5259 5752 1.612950 TGTAGCAATGTGTTGGCCAAG 59.387 47.619 21.21 7.15 35.83 3.61
5260 5753 1.339610 GTGTAGCAATGTGTTGGCCAA 59.660 47.619 16.05 16.05 35.83 4.52
5261 5754 0.958091 GTGTAGCAATGTGTTGGCCA 59.042 50.000 0.00 0.00 35.83 5.36
5262 5755 1.068333 CAGTGTAGCAATGTGTTGGCC 60.068 52.381 0.00 0.00 35.83 5.36
5263 5756 1.666888 GCAGTGTAGCAATGTGTTGGC 60.667 52.381 0.00 0.00 35.83 4.52
5264 5757 1.881973 AGCAGTGTAGCAATGTGTTGG 59.118 47.619 0.00 0.00 35.83 3.77
5265 5758 2.291465 ACAGCAGTGTAGCAATGTGTTG 59.709 45.455 0.00 0.00 34.05 3.33
5266 5759 2.549754 GACAGCAGTGTAGCAATGTGTT 59.450 45.455 0.00 0.00 36.88 3.32
5271 5764 1.432514 CACGACAGCAGTGTAGCAAT 58.567 50.000 0.00 0.00 36.88 3.56
5273 5766 4.653555 CACGACAGCAGTGTAGCA 57.346 55.556 0.00 0.00 36.88 3.49
5280 5773 2.250485 GCAAGCACACGACAGCAG 59.750 61.111 0.00 0.00 0.00 4.24
5299 5792 1.733399 GCCGACAACGAGGACTGAC 60.733 63.158 0.00 0.00 42.66 3.51
5303 5796 2.432628 CAGGCCGACAACGAGGAC 60.433 66.667 0.00 0.00 42.66 3.85
5304 5797 4.373116 GCAGGCCGACAACGAGGA 62.373 66.667 0.00 0.00 42.66 3.71
5305 5798 4.379243 AGCAGGCCGACAACGAGG 62.379 66.667 0.00 0.00 42.66 4.63
5306 5799 2.811317 GAGCAGGCCGACAACGAG 60.811 66.667 0.00 0.00 42.66 4.18
5307 5800 4.717629 CGAGCAGGCCGACAACGA 62.718 66.667 0.00 0.00 42.66 3.85
5309 5802 2.665185 AACGAGCAGGCCGACAAC 60.665 61.111 0.00 0.00 0.00 3.32
5331 5824 3.449227 CCGACGGCCTCAGCTACA 61.449 66.667 0.00 0.00 39.73 2.74
5338 5831 4.736896 GTGTCACCCGACGGCCTC 62.737 72.222 8.86 0.00 45.80 4.70
5340 5833 4.309950 AAGTGTCACCCGACGGCC 62.310 66.667 8.86 0.00 45.80 6.13
5341 5834 3.041940 CAAGTGTCACCCGACGGC 61.042 66.667 8.86 0.00 45.80 5.68
5342 5835 3.041940 GCAAGTGTCACCCGACGG 61.042 66.667 6.99 6.99 45.80 4.79
5343 5836 1.885388 TTGCAAGTGTCACCCGACG 60.885 57.895 0.00 0.00 45.80 5.12
5344 5837 1.092921 TGTTGCAAGTGTCACCCGAC 61.093 55.000 0.00 0.00 42.93 4.79
5345 5838 0.813610 CTGTTGCAAGTGTCACCCGA 60.814 55.000 0.00 0.00 0.00 5.14
5346 5839 1.648720 CTGTTGCAAGTGTCACCCG 59.351 57.895 0.00 0.00 0.00 5.28
5347 5840 1.360192 GCTGTTGCAAGTGTCACCC 59.640 57.895 0.00 0.00 39.41 4.61
5348 5841 1.360192 GGCTGTTGCAAGTGTCACC 59.640 57.895 0.00 0.00 41.91 4.02
5349 5842 0.670162 ATGGCTGTTGCAAGTGTCAC 59.330 50.000 0.00 0.00 41.91 3.67
5350 5843 1.067364 CAATGGCTGTTGCAAGTGTCA 59.933 47.619 0.00 3.57 41.91 3.58
5351 5844 1.774639 CAATGGCTGTTGCAAGTGTC 58.225 50.000 0.00 0.00 41.91 3.67
5352 5845 3.972107 CAATGGCTGTTGCAAGTGT 57.028 47.368 0.00 0.00 41.91 3.55
5376 5869 2.031163 GTGGAGGCACAACGAGCT 59.969 61.111 0.00 0.00 0.00 4.09
5377 5870 3.050275 GGTGGAGGCACAACGAGC 61.050 66.667 0.00 0.00 0.00 5.03
5378 5871 2.358737 GGGTGGAGGCACAACGAG 60.359 66.667 0.00 0.00 0.00 4.18
5381 5874 3.146828 AAGGGGGTGGAGGCACAAC 62.147 63.158 0.00 0.00 0.00 3.32
5382 5875 2.780924 AAGGGGGTGGAGGCACAA 60.781 61.111 0.00 0.00 0.00 3.33
5383 5876 3.579302 CAAGGGGGTGGAGGCACA 61.579 66.667 0.00 0.00 0.00 4.57
5384 5877 4.366684 CCAAGGGGGTGGAGGCAC 62.367 72.222 0.00 0.00 41.65 5.01
5407 5900 2.676471 AAACCCACCTGGCGATGC 60.676 61.111 0.00 0.00 37.83 3.91
5408 5901 2.046285 GGAAACCCACCTGGCGATG 61.046 63.158 0.00 0.00 37.83 3.84
5409 5902 2.355115 GGAAACCCACCTGGCGAT 59.645 61.111 0.00 0.00 37.83 4.58
5410 5903 3.172106 TGGAAACCCACCTGGCGA 61.172 61.111 0.00 0.00 37.83 5.54
5411 5904 2.672996 CTGGAAACCCACCTGGCG 60.673 66.667 0.00 0.00 37.83 5.69
5412 5905 2.991540 GCTGGAAACCCACCTGGC 60.992 66.667 0.00 0.00 37.83 4.85
5413 5906 0.967380 GATGCTGGAAACCCACCTGG 60.967 60.000 0.00 0.00 41.37 4.45
5414 5907 1.308069 CGATGCTGGAAACCCACCTG 61.308 60.000 0.00 0.00 0.00 4.00
5415 5908 1.002134 CGATGCTGGAAACCCACCT 60.002 57.895 0.00 0.00 0.00 4.00
5416 5909 2.700773 GCGATGCTGGAAACCCACC 61.701 63.158 0.00 0.00 0.00 4.61
5417 5910 2.700773 GGCGATGCTGGAAACCCAC 61.701 63.158 0.00 0.00 0.00 4.61
5418 5911 2.361104 GGCGATGCTGGAAACCCA 60.361 61.111 0.00 0.00 0.00 4.51
5419 5912 2.361104 TGGCGATGCTGGAAACCC 60.361 61.111 0.00 0.00 0.00 4.11
5420 5913 2.700773 GGTGGCGATGCTGGAAACC 61.701 63.158 0.00 0.00 0.00 3.27
5421 5914 1.926511 CTGGTGGCGATGCTGGAAAC 61.927 60.000 0.00 0.00 0.00 2.78
5422 5915 1.675310 CTGGTGGCGATGCTGGAAA 60.675 57.895 0.00 0.00 0.00 3.13
5423 5916 2.046023 CTGGTGGCGATGCTGGAA 60.046 61.111 0.00 0.00 0.00 3.53
5424 5917 3.315142 GACTGGTGGCGATGCTGGA 62.315 63.158 0.00 0.00 0.00 3.86
5425 5918 2.821366 GACTGGTGGCGATGCTGG 60.821 66.667 0.00 0.00 0.00 4.85
5426 5919 3.190849 CGACTGGTGGCGATGCTG 61.191 66.667 0.00 0.00 0.00 4.41
5427 5920 3.649277 GACGACTGGTGGCGATGCT 62.649 63.158 0.00 0.00 0.00 3.79
5467 5960 2.920647 GCAAAACAATGGGTACTGCGAC 60.921 50.000 0.00 0.00 30.43 5.19
5474 5967 0.315568 GCGTGGCAAAACAATGGGTA 59.684 50.000 0.00 0.00 0.00 3.69
5505 5998 2.607668 CTAACGATGGTGAGCGGCGA 62.608 60.000 12.98 0.00 34.48 5.54
5515 6008 2.015736 AGACAGCAAGCTAACGATGG 57.984 50.000 0.00 0.00 0.00 3.51
5517 6010 2.263077 CGAAGACAGCAAGCTAACGAT 58.737 47.619 0.00 0.00 0.00 3.73
5518 6011 1.668919 CCGAAGACAGCAAGCTAACGA 60.669 52.381 0.00 0.00 0.00 3.85
5519 6012 0.716108 CCGAAGACAGCAAGCTAACG 59.284 55.000 0.00 0.00 0.00 3.18
5520 6013 1.797025 ACCGAAGACAGCAAGCTAAC 58.203 50.000 0.00 0.00 0.00 2.34
5523 6016 0.106708 TCAACCGAAGACAGCAAGCT 59.893 50.000 0.00 0.00 0.00 3.74
5525 6018 2.614057 AGTTTCAACCGAAGACAGCAAG 59.386 45.455 0.00 0.00 31.28 4.01
5529 6022 5.636837 TGAAAAAGTTTCAACCGAAGACAG 58.363 37.500 0.99 0.00 31.28 3.51
5530 6023 5.413213 TCTGAAAAAGTTTCAACCGAAGACA 59.587 36.000 5.06 0.00 31.28 3.41
5532 6025 6.503589 TTCTGAAAAAGTTTCAACCGAAGA 57.496 33.333 5.06 0.00 31.28 2.87
5533 6026 5.230097 GCTTCTGAAAAAGTTTCAACCGAAG 59.770 40.000 17.98 17.98 34.28 3.79
5535 6028 4.398044 AGCTTCTGAAAAAGTTTCAACCGA 59.602 37.500 5.06 0.00 0.00 4.69
5536 6029 4.500477 CAGCTTCTGAAAAAGTTTCAACCG 59.500 41.667 5.06 0.00 32.44 4.44
5546 6039 4.045636 GCTTGAACCAGCTTCTGAAAAA 57.954 40.909 0.00 0.00 36.79 1.94
5564 6057 2.270986 CCAGCGGCCAAGAAAGCTT 61.271 57.895 2.24 0.00 37.94 3.74
5579 6072 2.971307 ACCACAAAAAGTTGCAACCAG 58.029 42.857 25.62 13.27 38.39 4.00
5588 6081 1.404035 GACGAGGCAACCACAAAAAGT 59.596 47.619 0.00 0.00 37.17 2.66
5590 6083 1.757682 AGACGAGGCAACCACAAAAA 58.242 45.000 0.00 0.00 37.17 1.94
5595 6088 0.320697 ACCTTAGACGAGGCAACCAC 59.679 55.000 0.00 0.00 40.65 4.16
5610 6103 5.261216 TCAACTGGAGAAAGTTTCAACCTT 58.739 37.500 22.93 13.08 38.34 3.50
5611 6104 4.855340 TCAACTGGAGAAAGTTTCAACCT 58.145 39.130 22.93 9.26 38.34 3.50
5613 6106 6.621613 AGTTTCAACTGGAGAAAGTTTCAAC 58.378 36.000 17.65 9.96 38.34 3.18
5614 6107 6.834168 AGTTTCAACTGGAGAAAGTTTCAA 57.166 33.333 17.65 2.40 38.34 2.69
5615 6108 6.834168 AAGTTTCAACTGGAGAAAGTTTCA 57.166 33.333 17.65 0.00 42.77 2.69
5618 6111 7.666623 TGAAAAAGTTTCAACTGGAGAAAGTT 58.333 30.769 0.99 9.79 45.57 2.66
5619 6112 7.227049 TGAAAAAGTTTCAACTGGAGAAAGT 57.773 32.000 0.99 0.00 39.66 2.66
5620 6113 8.532977 TTTGAAAAAGTTTCAACTGGAGAAAG 57.467 30.769 14.11 0.00 39.66 2.62
5621 6114 8.894768 TTTTGAAAAAGTTTCAACTGGAGAAA 57.105 26.923 14.11 3.83 39.66 2.52
5622 6115 7.117667 GCTTTTGAAAAAGTTTCAACTGGAGAA 59.882 33.333 14.11 5.96 45.48 2.87
5623 6116 6.589907 GCTTTTGAAAAAGTTTCAACTGGAGA 59.410 34.615 14.11 0.00 45.48 3.71
5624 6117 6.368516 TGCTTTTGAAAAAGTTTCAACTGGAG 59.631 34.615 14.11 11.08 45.48 3.86
5625 6118 6.226787 TGCTTTTGAAAAAGTTTCAACTGGA 58.773 32.000 14.11 9.29 45.48 3.86
5626 6119 6.402442 CCTGCTTTTGAAAAAGTTTCAACTGG 60.402 38.462 14.11 12.23 45.48 4.00
5627 6120 6.147656 ACCTGCTTTTGAAAAAGTTTCAACTG 59.852 34.615 14.11 11.17 45.48 3.16
5628 6121 6.230472 ACCTGCTTTTGAAAAAGTTTCAACT 58.770 32.000 14.11 0.00 45.48 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.