Multiple sequence alignment - TraesCS1D01G084100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G084100 chr1D 100.000 2798 0 0 1 2798 67002104 66999307 0.000000e+00 5168.0
1 TraesCS1D01G084100 chr1D 86.775 431 55 1 4 432 461345017 461344587 2.150000e-131 479.0
2 TraesCS1D01G084100 chr1D 100.000 34 0 0 3046 3079 66999059 66999026 2.560000e-06 63.9
3 TraesCS1D01G084100 chr1B 87.766 2305 176 60 428 2697 108303858 108301625 0.000000e+00 2597.0
4 TraesCS1D01G084100 chr1A 88.095 2184 151 42 572 2701 65800569 65798441 0.000000e+00 2492.0
5 TraesCS1D01G084100 chr5B 87.359 443 52 3 4 444 412283963 412283523 3.540000e-139 505.0
6 TraesCS1D01G084100 chr5B 87.648 421 50 1 1 419 558776643 558777063 3.570000e-134 488.0
7 TraesCS1D01G084100 chr5B 86.836 433 54 2 4 434 356369615 356369184 5.970000e-132 481.0
8 TraesCS1D01G084100 chr4D 88.208 424 44 4 1 420 52750227 52750648 4.580000e-138 501.0
9 TraesCS1D01G084100 chr7B 87.972 424 46 4 1 420 698502077 698502499 2.130000e-136 496.0
10 TraesCS1D01G084100 chr7B 86.927 436 53 3 1 433 110879595 110880029 1.280000e-133 486.0
11 TraesCS1D01G084100 chr7B 86.697 436 56 1 4 437 40184839 40184404 1.660000e-132 483.0
12 TraesCS1D01G084100 chr7B 83.636 165 23 4 2360 2521 597454929 597455092 5.320000e-33 152.0
13 TraesCS1D01G084100 chr7A 88.378 413 45 2 1 410 689538315 689538727 7.670000e-136 494.0
14 TraesCS1D01G084100 chr6A 79.397 199 37 2 2377 2571 15863807 15863609 1.490000e-28 137.0
15 TraesCS1D01G084100 chr6D 88.889 54 5 1 2338 2390 433601013 433600960 7.130000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G084100 chr1D 66999026 67002104 3078 True 2615.95 5168 100.000 1 3079 2 chr1D.!!$R2 3078
1 TraesCS1D01G084100 chr1B 108301625 108303858 2233 True 2597.00 2597 87.766 428 2697 1 chr1B.!!$R1 2269
2 TraesCS1D01G084100 chr1A 65798441 65800569 2128 True 2492.00 2492 88.095 572 2701 1 chr1A.!!$R1 2129

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.032130 TCGTGCAGGAGTGTCAGTTC 59.968 55.0 4.68 0.0 0.0 3.01 F
141 142 0.032678 CGTGCAGGAGTGTCAGTTCT 59.967 55.0 0.00 0.0 0.0 3.01 F
183 184 0.035820 GACATGTTGCCCCGGTCTAA 60.036 55.0 0.00 0.0 0.0 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1136 1157 0.320697 GTGAAGGTCCGTGCTTAGGT 59.679 55.0 0.00 0.0 0.00 3.08 R
1337 1360 0.611714 GGGTGCTCCTAAGAAACGGA 59.388 55.0 4.53 0.0 0.00 4.69 R
2170 2217 1.294659 GCAGCCGACTTCACCAAGAG 61.295 60.0 0.00 0.0 33.34 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.515926 TATCGTCTAGGAGTACGCGT 57.484 50.000 19.17 19.17 38.94 6.01
21 22 2.515926 ATCGTCTAGGAGTACGCGTA 57.484 50.000 16.41 16.41 38.94 4.42
22 23 1.845266 TCGTCTAGGAGTACGCGTAG 58.155 55.000 21.25 17.16 38.94 3.51
23 24 1.405463 TCGTCTAGGAGTACGCGTAGA 59.595 52.381 21.25 20.57 38.94 2.59
24 25 1.520590 CGTCTAGGAGTACGCGTAGAC 59.479 57.143 32.28 32.28 45.65 2.59
25 26 1.520590 GTCTAGGAGTACGCGTAGACG 59.479 57.143 30.30 9.67 42.64 4.18
26 27 0.857935 CTAGGAGTACGCGTAGACGG 59.142 60.000 21.25 4.46 40.23 4.79
27 28 0.175760 TAGGAGTACGCGTAGACGGT 59.824 55.000 21.25 6.27 40.23 4.83
28 29 0.674895 AGGAGTACGCGTAGACGGTT 60.675 55.000 21.25 1.07 40.23 4.44
29 30 0.522076 GGAGTACGCGTAGACGGTTG 60.522 60.000 21.25 0.00 40.23 3.77
30 31 0.166814 GAGTACGCGTAGACGGTTGT 59.833 55.000 21.25 0.00 40.23 3.32
31 32 0.166814 AGTACGCGTAGACGGTTGTC 59.833 55.000 21.25 4.31 45.86 3.18
40 41 3.190337 GACGGTTGTCTACGCAAGT 57.810 52.632 0.00 0.00 45.07 3.16
41 42 0.782384 GACGGTTGTCTACGCAAGTG 59.218 55.000 0.00 0.00 46.11 3.16
42 43 1.601162 GACGGTTGTCTACGCAAGTGA 60.601 52.381 0.00 0.00 46.11 3.41
43 44 3.728581 GACGGTTGTCTACGCAAGTGAC 61.729 54.545 0.00 0.00 46.11 3.67
51 52 4.047834 CGCAAGTGACAGCTGGAA 57.952 55.556 19.93 2.04 0.00 3.53
52 53 1.864862 CGCAAGTGACAGCTGGAAG 59.135 57.895 19.93 2.66 0.00 3.46
53 54 0.601046 CGCAAGTGACAGCTGGAAGA 60.601 55.000 19.93 0.00 34.07 2.87
54 55 1.818642 GCAAGTGACAGCTGGAAGAT 58.181 50.000 19.93 0.00 34.07 2.40
82 83 4.898829 TCTTGTGATGAGTTTGTGGTTG 57.101 40.909 0.00 0.00 0.00 3.77
83 84 3.631686 TCTTGTGATGAGTTTGTGGTTGG 59.368 43.478 0.00 0.00 0.00 3.77
84 85 3.289407 TGTGATGAGTTTGTGGTTGGA 57.711 42.857 0.00 0.00 0.00 3.53
85 86 3.213506 TGTGATGAGTTTGTGGTTGGAG 58.786 45.455 0.00 0.00 0.00 3.86
86 87 3.214328 GTGATGAGTTTGTGGTTGGAGT 58.786 45.455 0.00 0.00 0.00 3.85
87 88 3.251004 GTGATGAGTTTGTGGTTGGAGTC 59.749 47.826 0.00 0.00 0.00 3.36
88 89 3.136443 TGATGAGTTTGTGGTTGGAGTCT 59.864 43.478 0.00 0.00 0.00 3.24
89 90 2.917933 TGAGTTTGTGGTTGGAGTCTG 58.082 47.619 0.00 0.00 0.00 3.51
90 91 2.503765 TGAGTTTGTGGTTGGAGTCTGA 59.496 45.455 0.00 0.00 0.00 3.27
91 92 2.872858 GAGTTTGTGGTTGGAGTCTGAC 59.127 50.000 0.00 0.00 0.00 3.51
92 93 2.238646 AGTTTGTGGTTGGAGTCTGACA 59.761 45.455 10.88 0.00 0.00 3.58
93 94 3.013921 GTTTGTGGTTGGAGTCTGACAA 58.986 45.455 10.88 0.00 0.00 3.18
94 95 3.576078 TTGTGGTTGGAGTCTGACAAT 57.424 42.857 10.88 0.00 0.00 2.71
95 96 3.576078 TGTGGTTGGAGTCTGACAATT 57.424 42.857 10.88 0.00 0.00 2.32
96 97 3.897239 TGTGGTTGGAGTCTGACAATTT 58.103 40.909 10.88 0.00 0.00 1.82
97 98 4.277476 TGTGGTTGGAGTCTGACAATTTT 58.723 39.130 10.88 0.00 0.00 1.82
98 99 4.097741 TGTGGTTGGAGTCTGACAATTTTG 59.902 41.667 10.88 0.00 0.00 2.44
99 100 3.636300 TGGTTGGAGTCTGACAATTTTGG 59.364 43.478 10.88 0.00 0.00 3.28
100 101 3.636764 GGTTGGAGTCTGACAATTTTGGT 59.363 43.478 10.88 0.00 0.00 3.67
101 102 4.099419 GGTTGGAGTCTGACAATTTTGGTT 59.901 41.667 10.88 0.00 0.00 3.67
102 103 5.395214 GGTTGGAGTCTGACAATTTTGGTTT 60.395 40.000 10.88 0.00 0.00 3.27
103 104 5.514274 TGGAGTCTGACAATTTTGGTTTC 57.486 39.130 10.88 0.00 0.00 2.78
104 105 4.340950 TGGAGTCTGACAATTTTGGTTTCC 59.659 41.667 10.88 4.68 0.00 3.13
105 106 4.584743 GGAGTCTGACAATTTTGGTTTCCT 59.415 41.667 10.88 0.00 0.00 3.36
106 107 5.278512 GGAGTCTGACAATTTTGGTTTCCTC 60.279 44.000 10.88 0.00 0.00 3.71
107 108 4.584743 AGTCTGACAATTTTGGTTTCCTCC 59.415 41.667 10.88 0.00 0.00 4.30
108 109 4.584743 GTCTGACAATTTTGGTTTCCTCCT 59.415 41.667 2.24 0.00 0.00 3.69
109 110 4.827284 TCTGACAATTTTGGTTTCCTCCTC 59.173 41.667 0.00 0.00 0.00 3.71
110 111 3.895041 TGACAATTTTGGTTTCCTCCTCC 59.105 43.478 0.00 0.00 0.00 4.30
111 112 3.895041 GACAATTTTGGTTTCCTCCTCCA 59.105 43.478 0.00 0.00 0.00 3.86
112 113 4.294347 ACAATTTTGGTTTCCTCCTCCAA 58.706 39.130 0.00 0.00 39.12 3.53
113 114 4.100963 ACAATTTTGGTTTCCTCCTCCAAC 59.899 41.667 0.00 0.00 40.32 3.77
114 115 1.975660 TTTGGTTTCCTCCTCCAACG 58.024 50.000 0.00 0.00 40.32 4.10
115 116 0.841289 TTGGTTTCCTCCTCCAACGT 59.159 50.000 0.00 0.00 36.48 3.99
116 117 0.395312 TGGTTTCCTCCTCCAACGTC 59.605 55.000 0.00 0.00 0.00 4.34
117 118 0.395312 GGTTTCCTCCTCCAACGTCA 59.605 55.000 0.00 0.00 0.00 4.35
118 119 1.003233 GGTTTCCTCCTCCAACGTCAT 59.997 52.381 0.00 0.00 0.00 3.06
119 120 2.235402 GGTTTCCTCCTCCAACGTCATA 59.765 50.000 0.00 0.00 0.00 2.15
120 121 3.522553 GTTTCCTCCTCCAACGTCATAG 58.477 50.000 0.00 0.00 0.00 2.23
121 122 2.526888 TCCTCCTCCAACGTCATAGT 57.473 50.000 0.00 0.00 0.00 2.12
122 123 2.376109 TCCTCCTCCAACGTCATAGTC 58.624 52.381 0.00 0.00 0.00 2.59
123 124 1.065701 CCTCCTCCAACGTCATAGTCG 59.934 57.143 0.00 0.00 0.00 4.18
124 125 1.743958 CTCCTCCAACGTCATAGTCGT 59.256 52.381 0.00 0.00 43.45 4.34
125 126 1.471287 TCCTCCAACGTCATAGTCGTG 59.529 52.381 0.00 0.00 41.38 4.35
126 127 1.269166 CTCCAACGTCATAGTCGTGC 58.731 55.000 0.00 0.00 41.38 5.34
127 128 0.599060 TCCAACGTCATAGTCGTGCA 59.401 50.000 0.00 0.00 41.38 4.57
128 129 0.992072 CCAACGTCATAGTCGTGCAG 59.008 55.000 0.00 0.00 41.38 4.41
129 130 0.992072 CAACGTCATAGTCGTGCAGG 59.008 55.000 0.00 0.00 41.38 4.85
130 131 0.885879 AACGTCATAGTCGTGCAGGA 59.114 50.000 4.68 4.68 41.38 3.86
131 132 0.452184 ACGTCATAGTCGTGCAGGAG 59.548 55.000 9.83 0.00 40.07 3.69
132 133 0.452184 CGTCATAGTCGTGCAGGAGT 59.548 55.000 19.76 19.76 0.00 3.85
133 134 1.795525 CGTCATAGTCGTGCAGGAGTG 60.796 57.143 23.61 15.78 0.00 3.51
134 135 1.202582 GTCATAGTCGTGCAGGAGTGT 59.797 52.381 23.61 15.98 0.00 3.55
135 136 1.472878 TCATAGTCGTGCAGGAGTGTC 59.527 52.381 23.61 6.80 0.00 3.67
136 137 1.202348 CATAGTCGTGCAGGAGTGTCA 59.798 52.381 23.61 7.25 0.00 3.58
137 138 0.881796 TAGTCGTGCAGGAGTGTCAG 59.118 55.000 23.61 0.00 0.00 3.51
138 139 1.109920 AGTCGTGCAGGAGTGTCAGT 61.110 55.000 15.68 0.00 0.00 3.41
139 140 0.249489 GTCGTGCAGGAGTGTCAGTT 60.249 55.000 9.83 0.00 0.00 3.16
140 141 0.032130 TCGTGCAGGAGTGTCAGTTC 59.968 55.000 4.68 0.00 0.00 3.01
141 142 0.032678 CGTGCAGGAGTGTCAGTTCT 59.967 55.000 0.00 0.00 0.00 3.01
142 143 1.506493 GTGCAGGAGTGTCAGTTCTG 58.494 55.000 11.24 11.24 0.00 3.02
143 144 0.394192 TGCAGGAGTGTCAGTTCTGG 59.606 55.000 16.40 0.65 0.00 3.86
144 145 0.681733 GCAGGAGTGTCAGTTCTGGA 59.318 55.000 16.40 0.00 0.00 3.86
145 146 1.337635 GCAGGAGTGTCAGTTCTGGAG 60.338 57.143 16.40 0.00 0.00 3.86
146 147 1.967066 CAGGAGTGTCAGTTCTGGAGT 59.033 52.381 7.99 0.00 0.00 3.85
147 148 2.366916 CAGGAGTGTCAGTTCTGGAGTT 59.633 50.000 7.99 0.00 0.00 3.01
148 149 2.630580 AGGAGTGTCAGTTCTGGAGTTC 59.369 50.000 0.00 0.00 0.00 3.01
149 150 2.608261 GGAGTGTCAGTTCTGGAGTTCG 60.608 54.545 0.00 0.00 0.00 3.95
150 151 2.293677 GAGTGTCAGTTCTGGAGTTCGA 59.706 50.000 0.00 0.00 0.00 3.71
151 152 2.894126 AGTGTCAGTTCTGGAGTTCGAT 59.106 45.455 0.00 0.00 0.00 3.59
152 153 2.989840 GTGTCAGTTCTGGAGTTCGATG 59.010 50.000 0.00 0.00 0.00 3.84
153 154 2.029020 TGTCAGTTCTGGAGTTCGATGG 60.029 50.000 0.00 0.00 0.00 3.51
154 155 2.028930 GTCAGTTCTGGAGTTCGATGGT 60.029 50.000 0.00 0.00 0.00 3.55
155 156 3.192844 GTCAGTTCTGGAGTTCGATGGTA 59.807 47.826 0.00 0.00 0.00 3.25
156 157 4.023980 TCAGTTCTGGAGTTCGATGGTAT 58.976 43.478 0.00 0.00 0.00 2.73
157 158 4.115516 CAGTTCTGGAGTTCGATGGTATG 58.884 47.826 0.00 0.00 0.00 2.39
158 159 3.769844 AGTTCTGGAGTTCGATGGTATGT 59.230 43.478 0.00 0.00 0.00 2.29
159 160 4.113354 GTTCTGGAGTTCGATGGTATGTC 58.887 47.826 0.00 0.00 0.00 3.06
160 161 2.693591 TCTGGAGTTCGATGGTATGTCC 59.306 50.000 0.00 0.00 0.00 4.02
174 175 4.002797 GTCCAGGGACATGTTGCC 57.997 61.111 13.49 0.00 44.02 4.52
175 176 1.678970 GTCCAGGGACATGTTGCCC 60.679 63.158 13.66 13.66 44.02 5.36
176 177 2.362889 CCAGGGACATGTTGCCCC 60.363 66.667 17.08 14.74 45.89 5.80
177 178 2.751436 CAGGGACATGTTGCCCCG 60.751 66.667 17.08 5.35 45.89 5.73
178 179 4.047125 AGGGACATGTTGCCCCGG 62.047 66.667 17.08 0.00 45.89 5.73
179 180 4.360405 GGGACATGTTGCCCCGGT 62.360 66.667 10.93 0.00 38.45 5.28
180 181 2.750237 GGACATGTTGCCCCGGTC 60.750 66.667 0.00 0.00 0.00 4.79
181 182 2.351276 GACATGTTGCCCCGGTCT 59.649 61.111 0.00 0.00 0.00 3.85
182 183 1.600107 GACATGTTGCCCCGGTCTA 59.400 57.895 0.00 0.00 0.00 2.59
183 184 0.035820 GACATGTTGCCCCGGTCTAA 60.036 55.000 0.00 0.00 0.00 2.10
184 185 0.623723 ACATGTTGCCCCGGTCTAAT 59.376 50.000 0.00 0.00 0.00 1.73
185 186 1.005450 ACATGTTGCCCCGGTCTAATT 59.995 47.619 0.00 0.00 0.00 1.40
186 187 1.676006 CATGTTGCCCCGGTCTAATTC 59.324 52.381 0.00 0.00 0.00 2.17
187 188 0.988832 TGTTGCCCCGGTCTAATTCT 59.011 50.000 0.00 0.00 0.00 2.40
188 189 1.353022 TGTTGCCCCGGTCTAATTCTT 59.647 47.619 0.00 0.00 0.00 2.52
189 190 2.224917 TGTTGCCCCGGTCTAATTCTTT 60.225 45.455 0.00 0.00 0.00 2.52
190 191 2.413310 TGCCCCGGTCTAATTCTTTC 57.587 50.000 0.00 0.00 0.00 2.62
191 192 1.631388 TGCCCCGGTCTAATTCTTTCA 59.369 47.619 0.00 0.00 0.00 2.69
192 193 2.040545 TGCCCCGGTCTAATTCTTTCAA 59.959 45.455 0.00 0.00 0.00 2.69
193 194 2.422479 GCCCCGGTCTAATTCTTTCAAC 59.578 50.000 0.00 0.00 0.00 3.18
194 195 2.676342 CCCCGGTCTAATTCTTTCAACG 59.324 50.000 0.00 0.00 0.00 4.10
195 196 2.676342 CCCGGTCTAATTCTTTCAACGG 59.324 50.000 0.00 0.00 38.59 4.44
196 197 2.095372 CCGGTCTAATTCTTTCAACGGC 59.905 50.000 0.00 0.00 31.93 5.68
197 198 2.739913 CGGTCTAATTCTTTCAACGGCA 59.260 45.455 0.00 0.00 0.00 5.69
198 199 3.187637 CGGTCTAATTCTTTCAACGGCAA 59.812 43.478 0.00 0.00 0.00 4.52
199 200 4.142687 CGGTCTAATTCTTTCAACGGCAAT 60.143 41.667 0.00 0.00 0.00 3.56
200 201 5.095490 GGTCTAATTCTTTCAACGGCAATG 58.905 41.667 0.00 0.00 0.00 2.82
201 202 5.095490 GTCTAATTCTTTCAACGGCAATGG 58.905 41.667 0.00 0.00 0.00 3.16
202 203 4.764823 TCTAATTCTTTCAACGGCAATGGT 59.235 37.500 0.00 0.00 0.00 3.55
203 204 4.335400 AATTCTTTCAACGGCAATGGTT 57.665 36.364 0.00 0.00 0.00 3.67
204 205 3.810310 TTCTTTCAACGGCAATGGTTT 57.190 38.095 0.00 0.00 0.00 3.27
205 206 3.810310 TCTTTCAACGGCAATGGTTTT 57.190 38.095 0.00 0.00 0.00 2.43
206 207 3.452474 TCTTTCAACGGCAATGGTTTTG 58.548 40.909 0.00 0.00 0.00 2.44
207 208 1.576356 TTCAACGGCAATGGTTTTGC 58.424 45.000 1.76 1.76 44.22 3.68
208 209 0.749649 TCAACGGCAATGGTTTTGCT 59.250 45.000 9.86 0.00 44.36 3.91
209 210 1.137872 TCAACGGCAATGGTTTTGCTT 59.862 42.857 9.86 0.00 44.36 3.91
210 211 1.526464 CAACGGCAATGGTTTTGCTTC 59.474 47.619 9.86 0.00 44.36 3.86
211 212 0.749649 ACGGCAATGGTTTTGCTTCA 59.250 45.000 9.86 0.00 44.36 3.02
212 213 1.137872 ACGGCAATGGTTTTGCTTCAA 59.862 42.857 9.86 0.00 44.36 2.69
213 214 1.794116 CGGCAATGGTTTTGCTTCAAG 59.206 47.619 9.86 0.00 44.36 3.02
214 215 1.532437 GGCAATGGTTTTGCTTCAAGC 59.468 47.619 1.04 1.04 44.36 4.01
229 230 4.978580 GCTTCAAGCAAACTACTTTGAAGG 59.021 41.667 20.73 8.46 41.89 3.46
230 231 5.450550 GCTTCAAGCAAACTACTTTGAAGGT 60.451 40.000 20.73 0.00 41.89 3.50
231 232 5.751243 TCAAGCAAACTACTTTGAAGGTC 57.249 39.130 0.00 0.00 39.43 3.85
232 233 5.437060 TCAAGCAAACTACTTTGAAGGTCT 58.563 37.500 0.00 0.00 39.43 3.85
233 234 5.296780 TCAAGCAAACTACTTTGAAGGTCTG 59.703 40.000 0.00 0.00 39.43 3.51
234 235 4.781934 AGCAAACTACTTTGAAGGTCTGT 58.218 39.130 0.00 0.00 39.43 3.41
235 236 5.925509 AGCAAACTACTTTGAAGGTCTGTA 58.074 37.500 0.00 0.00 39.43 2.74
236 237 6.354130 AGCAAACTACTTTGAAGGTCTGTAA 58.646 36.000 0.00 0.00 39.43 2.41
237 238 6.826741 AGCAAACTACTTTGAAGGTCTGTAAA 59.173 34.615 0.00 0.00 39.43 2.01
238 239 7.012421 AGCAAACTACTTTGAAGGTCTGTAAAG 59.988 37.037 0.00 0.00 39.43 1.85
239 240 6.862711 AACTACTTTGAAGGTCTGTAAAGC 57.137 37.500 0.00 0.00 34.38 3.51
240 241 6.176014 ACTACTTTGAAGGTCTGTAAAGCT 57.824 37.500 0.00 0.00 34.38 3.74
241 242 7.299246 ACTACTTTGAAGGTCTGTAAAGCTA 57.701 36.000 0.00 0.00 34.38 3.32
242 243 7.908453 ACTACTTTGAAGGTCTGTAAAGCTAT 58.092 34.615 0.00 0.00 34.38 2.97
243 244 8.376270 ACTACTTTGAAGGTCTGTAAAGCTATT 58.624 33.333 0.00 0.00 34.38 1.73
244 245 7.440523 ACTTTGAAGGTCTGTAAAGCTATTG 57.559 36.000 0.00 0.00 34.38 1.90
245 246 7.224297 ACTTTGAAGGTCTGTAAAGCTATTGA 58.776 34.615 0.00 0.00 34.38 2.57
246 247 7.885399 ACTTTGAAGGTCTGTAAAGCTATTGAT 59.115 33.333 0.00 0.00 34.38 2.57
247 248 7.849804 TTGAAGGTCTGTAAAGCTATTGATC 57.150 36.000 0.00 0.00 0.00 2.92
248 249 6.946340 TGAAGGTCTGTAAAGCTATTGATCA 58.054 36.000 0.00 0.00 0.00 2.92
249 250 7.044181 TGAAGGTCTGTAAAGCTATTGATCAG 58.956 38.462 0.00 0.00 0.00 2.90
250 251 5.363939 AGGTCTGTAAAGCTATTGATCAGC 58.636 41.667 0.00 0.00 39.41 4.26
251 252 4.210120 GGTCTGTAAAGCTATTGATCAGCG 59.790 45.833 0.00 0.00 43.97 5.18
252 253 5.043903 GTCTGTAAAGCTATTGATCAGCGA 58.956 41.667 0.00 0.00 43.97 4.93
253 254 5.694006 GTCTGTAAAGCTATTGATCAGCGAT 59.306 40.000 0.00 0.00 43.97 4.58
254 255 5.693555 TCTGTAAAGCTATTGATCAGCGATG 59.306 40.000 0.00 0.00 43.97 3.84
255 256 4.751600 TGTAAAGCTATTGATCAGCGATGG 59.248 41.667 0.00 0.00 43.97 3.51
256 257 3.758755 AAGCTATTGATCAGCGATGGA 57.241 42.857 0.00 0.00 43.97 3.41
257 258 3.316071 AGCTATTGATCAGCGATGGAG 57.684 47.619 0.00 0.00 43.97 3.86
258 259 1.731160 GCTATTGATCAGCGATGGAGC 59.269 52.381 0.00 0.00 37.41 4.70
259 260 2.344950 CTATTGATCAGCGATGGAGCC 58.655 52.381 0.00 0.00 38.01 4.70
260 261 0.602106 ATTGATCAGCGATGGAGCCG 60.602 55.000 0.00 0.00 38.01 5.52
279 280 3.411351 GTCGAGCGCGGCTGAAAA 61.411 61.111 7.35 0.00 39.88 2.29
280 281 3.112075 TCGAGCGCGGCTGAAAAG 61.112 61.111 10.69 0.00 39.88 2.27
281 282 3.112075 CGAGCGCGGCTGAAAAGA 61.112 61.111 8.83 0.00 39.88 2.52
282 283 2.456119 CGAGCGCGGCTGAAAAGAT 61.456 57.895 8.83 0.00 39.88 2.40
283 284 1.061570 GAGCGCGGCTGAAAAGATG 59.938 57.895 8.83 0.00 39.88 2.90
284 285 1.361668 GAGCGCGGCTGAAAAGATGA 61.362 55.000 8.83 0.00 39.88 2.92
285 286 0.745845 AGCGCGGCTGAAAAGATGAT 60.746 50.000 8.83 0.00 37.57 2.45
286 287 0.937304 GCGCGGCTGAAAAGATGATA 59.063 50.000 8.83 0.00 0.00 2.15
287 288 1.532868 GCGCGGCTGAAAAGATGATAT 59.467 47.619 8.83 0.00 0.00 1.63
288 289 2.663879 GCGCGGCTGAAAAGATGATATG 60.664 50.000 8.83 0.00 0.00 1.78
289 290 2.545526 CGCGGCTGAAAAGATGATATGT 59.454 45.455 0.00 0.00 0.00 2.29
290 291 3.363378 CGCGGCTGAAAAGATGATATGTC 60.363 47.826 0.00 0.00 0.00 3.06
291 292 3.812053 GCGGCTGAAAAGATGATATGTCT 59.188 43.478 0.00 0.00 0.00 3.41
292 293 4.084118 GCGGCTGAAAAGATGATATGTCTC 60.084 45.833 0.00 0.00 0.00 3.36
293 294 5.052481 CGGCTGAAAAGATGATATGTCTCA 58.948 41.667 0.00 0.00 0.00 3.27
294 295 5.699915 CGGCTGAAAAGATGATATGTCTCAT 59.300 40.000 0.00 0.00 38.57 2.90
295 296 6.204301 CGGCTGAAAAGATGATATGTCTCATT 59.796 38.462 0.00 0.00 36.01 2.57
296 297 7.255035 CGGCTGAAAAGATGATATGTCTCATTT 60.255 37.037 0.00 0.00 36.01 2.32
297 298 8.411683 GGCTGAAAAGATGATATGTCTCATTTT 58.588 33.333 0.00 0.00 36.01 1.82
298 299 9.798994 GCTGAAAAGATGATATGTCTCATTTTT 57.201 29.630 0.00 0.00 39.99 1.94
308 309 9.605275 TGATATGTCTCATTTTTCTTAGTGGAG 57.395 33.333 0.00 0.00 0.00 3.86
309 310 9.823647 GATATGTCTCATTTTTCTTAGTGGAGA 57.176 33.333 0.00 0.00 0.00 3.71
310 311 9.829507 ATATGTCTCATTTTTCTTAGTGGAGAG 57.170 33.333 0.00 0.00 31.26 3.20
311 312 6.467677 TGTCTCATTTTTCTTAGTGGAGAGG 58.532 40.000 0.00 0.00 31.26 3.69
312 313 5.877564 GTCTCATTTTTCTTAGTGGAGAGGG 59.122 44.000 0.00 0.00 31.26 4.30
313 314 5.785423 TCTCATTTTTCTTAGTGGAGAGGGA 59.215 40.000 0.00 0.00 0.00 4.20
314 315 5.805728 TCATTTTTCTTAGTGGAGAGGGAC 58.194 41.667 0.00 0.00 0.00 4.46
315 316 5.309543 TCATTTTTCTTAGTGGAGAGGGACA 59.690 40.000 0.00 0.00 0.00 4.02
316 317 4.891992 TTTTCTTAGTGGAGAGGGACAG 57.108 45.455 0.00 0.00 0.00 3.51
317 318 2.534042 TCTTAGTGGAGAGGGACAGG 57.466 55.000 0.00 0.00 0.00 4.00
318 319 1.007238 TCTTAGTGGAGAGGGACAGGG 59.993 57.143 0.00 0.00 0.00 4.45
319 320 0.790993 TTAGTGGAGAGGGACAGGGT 59.209 55.000 0.00 0.00 0.00 4.34
320 321 0.335361 TAGTGGAGAGGGACAGGGTC 59.665 60.000 0.00 0.00 0.00 4.46
321 322 1.079438 GTGGAGAGGGACAGGGTCT 59.921 63.158 0.00 0.00 32.47 3.85
322 323 1.079256 TGGAGAGGGACAGGGTCTG 59.921 63.158 0.00 0.00 37.52 3.51
323 324 1.687493 GGAGAGGGACAGGGTCTGG 60.687 68.421 0.00 0.00 35.51 3.86
324 325 1.079438 GAGAGGGACAGGGTCTGGT 59.921 63.158 0.00 0.00 35.51 4.00
325 326 0.545548 GAGAGGGACAGGGTCTGGTT 60.546 60.000 0.00 0.00 35.51 3.67
326 327 0.104409 AGAGGGACAGGGTCTGGTTT 60.104 55.000 0.00 0.00 35.51 3.27
327 328 0.771755 GAGGGACAGGGTCTGGTTTT 59.228 55.000 0.00 0.00 35.51 2.43
328 329 1.145119 GAGGGACAGGGTCTGGTTTTT 59.855 52.381 0.00 0.00 35.51 1.94
364 365 9.988815 ATCCTATCTATTCAGTTGTGTAATGTC 57.011 33.333 0.00 0.00 0.00 3.06
365 366 8.135529 TCCTATCTATTCAGTTGTGTAATGTCG 58.864 37.037 0.00 0.00 0.00 4.35
366 367 8.135529 CCTATCTATTCAGTTGTGTAATGTCGA 58.864 37.037 0.00 0.00 0.00 4.20
367 368 9.684448 CTATCTATTCAGTTGTGTAATGTCGAT 57.316 33.333 0.00 0.00 0.00 3.59
368 369 7.755582 TCTATTCAGTTGTGTAATGTCGATG 57.244 36.000 0.00 0.00 0.00 3.84
369 370 7.320399 TCTATTCAGTTGTGTAATGTCGATGT 58.680 34.615 0.00 0.00 0.00 3.06
370 371 6.801539 ATTCAGTTGTGTAATGTCGATGTT 57.198 33.333 0.00 0.00 0.00 2.71
371 372 6.612247 TTCAGTTGTGTAATGTCGATGTTT 57.388 33.333 0.00 0.00 0.00 2.83
372 373 7.716768 TTCAGTTGTGTAATGTCGATGTTTA 57.283 32.000 0.00 0.00 0.00 2.01
373 374 7.112528 TCAGTTGTGTAATGTCGATGTTTAC 57.887 36.000 0.00 0.00 0.00 2.01
374 375 6.702282 TCAGTTGTGTAATGTCGATGTTTACA 59.298 34.615 11.46 11.46 34.40 2.41
375 376 7.386573 TCAGTTGTGTAATGTCGATGTTTACAT 59.613 33.333 16.00 0.00 37.93 2.29
376 377 7.478355 CAGTTGTGTAATGTCGATGTTTACATG 59.522 37.037 16.00 9.67 37.93 3.21
377 378 7.386573 AGTTGTGTAATGTCGATGTTTACATGA 59.613 33.333 16.00 8.79 37.93 3.07
378 379 7.056002 TGTGTAATGTCGATGTTTACATGAC 57.944 36.000 16.00 8.71 37.93 3.06
379 380 6.871492 TGTGTAATGTCGATGTTTACATGACT 59.129 34.615 16.00 8.37 38.03 3.41
380 381 7.386573 TGTGTAATGTCGATGTTTACATGACTT 59.613 33.333 16.00 12.73 38.03 3.01
381 382 8.227791 GTGTAATGTCGATGTTTACATGACTTT 58.772 33.333 16.00 18.22 38.03 2.66
382 383 8.779303 TGTAATGTCGATGTTTACATGACTTTT 58.221 29.630 19.12 15.69 38.03 2.27
385 386 9.607285 AATGTCGATGTTTACATGACTTTTAAC 57.393 29.630 17.83 0.00 36.47 2.01
386 387 8.373048 TGTCGATGTTTACATGACTTTTAACT 57.627 30.769 17.83 0.00 36.57 2.24
387 388 8.279800 TGTCGATGTTTACATGACTTTTAACTG 58.720 33.333 17.83 0.00 36.57 3.16
388 389 8.492748 GTCGATGTTTACATGACTTTTAACTGA 58.507 33.333 0.00 0.00 36.57 3.41
389 390 9.047371 TCGATGTTTACATGACTTTTAACTGAA 57.953 29.630 0.00 0.00 36.57 3.02
390 391 9.825972 CGATGTTTACATGACTTTTAACTGAAT 57.174 29.630 0.00 0.00 36.57 2.57
452 453 4.217836 AGAGTACCGTGTATGAGAGTGA 57.782 45.455 0.00 0.00 0.00 3.41
453 454 4.193090 AGAGTACCGTGTATGAGAGTGAG 58.807 47.826 0.00 0.00 0.00 3.51
454 455 4.081031 AGAGTACCGTGTATGAGAGTGAGA 60.081 45.833 0.00 0.00 0.00 3.27
456 457 2.093106 ACCGTGTATGAGAGTGAGACC 58.907 52.381 0.00 0.00 0.00 3.85
457 458 2.291024 ACCGTGTATGAGAGTGAGACCT 60.291 50.000 0.00 0.00 0.00 3.85
458 459 3.054582 ACCGTGTATGAGAGTGAGACCTA 60.055 47.826 0.00 0.00 0.00 3.08
462 463 6.092944 CCGTGTATGAGAGTGAGACCTATATC 59.907 46.154 0.00 0.00 0.00 1.63
481 482 3.688694 TCCAAATAGTGCAGGTACGTT 57.311 42.857 0.00 0.00 0.00 3.99
499 500 1.643868 TTTGATCCATGCACCGACGC 61.644 55.000 0.00 0.00 0.00 5.19
527 528 0.882927 TGTACGAGCACTTGGTTGCC 60.883 55.000 0.00 0.00 44.14 4.52
548 549 4.487019 CCTCGTCTCTTAAGTTTCCACTC 58.513 47.826 1.63 0.00 30.45 3.51
552 553 4.617645 CGTCTCTTAAGTTTCCACTCTTCG 59.382 45.833 1.63 0.00 30.45 3.79
553 554 4.924462 GTCTCTTAAGTTTCCACTCTTCGG 59.076 45.833 1.63 0.00 30.45 4.30
554 555 3.660865 TCTTAAGTTTCCACTCTTCGGC 58.339 45.455 1.63 0.00 30.45 5.54
555 556 3.323979 TCTTAAGTTTCCACTCTTCGGCT 59.676 43.478 1.63 0.00 30.45 5.52
556 557 2.640316 AAGTTTCCACTCTTCGGCTT 57.360 45.000 0.00 0.00 30.45 4.35
557 558 3.764237 AAGTTTCCACTCTTCGGCTTA 57.236 42.857 0.00 0.00 30.45 3.09
558 559 3.041508 AGTTTCCACTCTTCGGCTTAC 57.958 47.619 0.00 0.00 0.00 2.34
559 560 2.633481 AGTTTCCACTCTTCGGCTTACT 59.367 45.455 0.00 0.00 0.00 2.24
560 561 3.071167 AGTTTCCACTCTTCGGCTTACTT 59.929 43.478 0.00 0.00 0.00 2.24
561 562 4.282703 AGTTTCCACTCTTCGGCTTACTTA 59.717 41.667 0.00 0.00 0.00 2.24
562 563 4.451629 TTCCACTCTTCGGCTTACTTAG 57.548 45.455 0.00 0.00 0.00 2.18
598 599 2.290960 GCCTGTTTCATTACCCTCCACT 60.291 50.000 0.00 0.00 0.00 4.00
613 614 1.004161 TCCACTCCAAATCGCCAATGA 59.996 47.619 0.00 0.00 0.00 2.57
671 673 4.081476 TCCATGAGTGTAGTTGGTGATCTG 60.081 45.833 0.00 0.00 0.00 2.90
963 965 1.488812 ACGGCCATATAAACCTCAGCA 59.511 47.619 2.24 0.00 0.00 4.41
1044 1065 2.359602 TCTTCGTCCTCGTCCGCT 60.360 61.111 0.00 0.00 38.33 5.52
1062 1083 1.773653 GCTCCCTCTTCTTCCATGGAT 59.226 52.381 17.06 0.00 0.00 3.41
1237 1258 0.683973 CACTCCAAGGTCTCTGCAGT 59.316 55.000 14.67 0.00 0.00 4.40
1238 1259 0.683973 ACTCCAAGGTCTCTGCAGTG 59.316 55.000 14.67 11.96 0.00 3.66
1380 1407 2.278206 CGACGACGATGAGGCCAG 60.278 66.667 5.01 0.00 42.66 4.85
1582 1612 2.077155 CGTACGTACGCGACTAACAT 57.923 50.000 32.36 0.00 43.14 2.71
1583 1613 2.430956 CGTACGTACGCGACTAACATT 58.569 47.619 32.36 0.00 43.14 2.71
1618 1664 8.841444 ATCATCACAACGAAATTTAACTATGC 57.159 30.769 0.00 0.00 0.00 3.14
1674 1720 6.531503 TCATTCAATCTAGATCCGGATACC 57.468 41.667 19.15 5.90 0.00 2.73
1791 1837 1.028330 TGCCGTGGGAGTACGTCTAG 61.028 60.000 0.00 0.00 42.24 2.43
1792 1838 0.745845 GCCGTGGGAGTACGTCTAGA 60.746 60.000 0.00 0.00 42.24 2.43
1830 1876 9.784531 TGAATTTCAGACTTATCAGTTCTTCTT 57.215 29.630 0.00 0.00 31.22 2.52
1841 1887 4.887748 TCAGTTCTTCTTCCATCTCACAC 58.112 43.478 0.00 0.00 0.00 3.82
1873 1919 6.088749 CACAGACTTGAGTTTGAACTATCGAG 59.911 42.308 8.47 0.00 39.88 4.04
1881 1927 7.264947 TGAGTTTGAACTATCGAGCAATGATA 58.735 34.615 0.00 0.00 39.88 2.15
1895 1941 3.911964 GCAATGATACAAAACGTGTGGAC 59.088 43.478 0.00 0.00 41.89 4.02
1896 1942 4.555708 GCAATGATACAAAACGTGTGGACA 60.556 41.667 0.00 0.00 41.89 4.02
1904 1950 4.208355 CAAAACGTGTGGACAATACTTCG 58.792 43.478 0.00 0.00 0.00 3.79
1915 1962 4.515567 GGACAATACTTCGGGGATCAAATC 59.484 45.833 0.00 0.00 0.00 2.17
1928 1975 4.036734 GGGATCAAATCAAATTGCGCTCTA 59.963 41.667 9.73 0.00 0.00 2.43
1929 1976 5.278660 GGGATCAAATCAAATTGCGCTCTAT 60.279 40.000 9.73 0.00 0.00 1.98
1948 1995 7.431376 CGCTCTATACATCTTTGTCGAACTTAA 59.569 37.037 0.00 0.00 37.28 1.85
2170 2217 5.561679 GGGGGTTAAGATGAGATGGTTATC 58.438 45.833 0.00 0.00 0.00 1.75
2211 2258 5.704978 TGCTTCATAATGTACAGTCTGCAAA 59.295 36.000 0.00 0.00 0.00 3.68
2229 2276 3.119495 GCAAAAAGTGCGGGACATATTCT 60.119 43.478 1.61 0.00 45.10 2.40
2287 2338 8.840833 TTTAAACTATTTTCCCTTCAAATGCC 57.159 30.769 0.00 0.00 0.00 4.40
2291 2342 5.960202 ACTATTTTCCCTTCAAATGCCATCT 59.040 36.000 0.00 0.00 0.00 2.90
2296 2347 6.872585 TTCCCTTCAAATGCCATCTTTTAT 57.127 33.333 0.00 0.00 0.00 1.40
2307 2358 6.530019 TGCCATCTTTTATTTTTCTCCTCC 57.470 37.500 0.00 0.00 0.00 4.30
2309 2360 5.582550 CCATCTTTTATTTTTCTCCTCCGC 58.417 41.667 0.00 0.00 0.00 5.54
2358 2409 1.235724 ACCGGCTTGCTAAAACTCAC 58.764 50.000 0.00 0.00 0.00 3.51
2378 2429 7.054124 ACTCACTCAACTGAGATTTAACCAAA 58.946 34.615 13.61 0.00 44.74 3.28
2405 2456 4.213694 CAGTCGACTACATAGCCGTTAGAT 59.786 45.833 19.57 0.00 30.98 1.98
2410 2461 6.039047 TCGACTACATAGCCGTTAGATCTTTT 59.961 38.462 0.00 0.00 30.98 2.27
2421 2472 6.038714 GCCGTTAGATCTTTTCATGGAGATTT 59.961 38.462 0.00 6.03 32.96 2.17
2433 2484 1.271543 TGGAGATTTGTGCTGGACTGG 60.272 52.381 0.00 0.00 0.00 4.00
2462 2516 1.001815 CAACGGACCTCGCATTTTGTT 60.002 47.619 0.00 0.00 43.89 2.83
2471 2525 1.002251 TCGCATTTTGTTCCACCGTTC 60.002 47.619 0.00 0.00 0.00 3.95
2475 2529 0.378962 TTTTGTTCCACCGTTCGCAG 59.621 50.000 0.00 0.00 0.00 5.18
2484 2538 1.258982 CACCGTTCGCAGCATATCTTC 59.741 52.381 0.00 0.00 0.00 2.87
2488 2542 1.869767 GTTCGCAGCATATCTTCCTGG 59.130 52.381 0.00 0.00 0.00 4.45
2497 2551 0.326595 TATCTTCCTGGCGGTTGCAA 59.673 50.000 0.00 0.00 45.35 4.08
2501 2555 0.250945 TTCCTGGCGGTTGCAACATA 60.251 50.000 29.55 12.10 45.35 2.29
2503 2557 0.101040 CCTGGCGGTTGCAACATATG 59.899 55.000 29.55 16.94 45.35 1.78
2504 2558 0.101040 CTGGCGGTTGCAACATATGG 59.899 55.000 29.55 14.13 45.35 2.74
2510 2565 2.023673 GGTTGCAACATATGGCTGCTA 58.976 47.619 29.55 17.75 37.00 3.49
2556 2611 1.078759 CAACATCTGCCCTCGTCGAC 61.079 60.000 5.18 5.18 0.00 4.20
2561 2616 1.136984 CTGCCCTCGTCGACTGTAC 59.863 63.158 14.70 0.00 0.00 2.90
2564 2619 1.664321 GCCCTCGTCGACTGTACCAT 61.664 60.000 14.70 0.00 0.00 3.55
2576 2631 1.153706 GTACCATGTCGTCCCACCG 60.154 63.158 0.00 0.00 0.00 4.94
2579 2634 4.082523 CATGTCGTCCCACCGGCT 62.083 66.667 0.00 0.00 32.64 5.52
2588 2643 2.360350 CCACCGGCTGCAACATCT 60.360 61.111 0.00 0.00 0.00 2.90
2613 2669 5.409214 GCATTGATGGTTGCAACATTTAGTT 59.591 36.000 29.55 7.03 42.42 2.24
2616 2672 6.892658 TGATGGTTGCAACATTTAGTTACT 57.107 33.333 29.55 2.64 38.74 2.24
2617 2673 6.908825 TGATGGTTGCAACATTTAGTTACTC 58.091 36.000 29.55 9.23 38.74 2.59
2620 2676 5.240623 TGGTTGCAACATTTAGTTACTCCAG 59.759 40.000 29.55 0.00 38.74 3.86
2631 2687 2.688958 AGTTACTCCAGATGTAGCGTCC 59.311 50.000 0.00 0.00 0.00 4.79
2638 2694 1.135373 CAGATGTAGCGTCCGTTGTCT 60.135 52.381 0.00 0.00 0.00 3.41
2657 2713 4.934001 TGTCTTTGCTTGCAACATTTTTCA 59.066 33.333 7.60 0.00 0.00 2.69
2660 2716 4.712191 TTGCTTGCAACATTTTTCATCG 57.288 36.364 3.70 0.00 0.00 3.84
2662 2718 2.159801 GCTTGCAACATTTTTCATCGCC 60.160 45.455 0.00 0.00 0.00 5.54
2667 2723 4.101942 GCAACATTTTTCATCGCCGATTA 58.898 39.130 0.00 0.00 0.00 1.75
2668 2724 4.027702 GCAACATTTTTCATCGCCGATTAC 60.028 41.667 0.00 0.00 0.00 1.89
2670 2726 5.499139 ACATTTTTCATCGCCGATTACAT 57.501 34.783 0.00 0.00 0.00 2.29
2682 2738 4.256920 GCCGATTACATCATCTAGCCATT 58.743 43.478 0.00 0.00 0.00 3.16
2685 2741 4.564372 CGATTACATCATCTAGCCATTCCG 59.436 45.833 0.00 0.00 0.00 4.30
2689 2745 0.315251 TCATCTAGCCATTCCGCTCG 59.685 55.000 0.00 0.00 40.39 5.03
2701 2757 0.319211 TCCGCTCGTAACACCACAAG 60.319 55.000 0.00 0.00 0.00 3.16
2702 2758 0.599204 CCGCTCGTAACACCACAAGT 60.599 55.000 0.00 0.00 0.00 3.16
2703 2759 1.336148 CCGCTCGTAACACCACAAGTA 60.336 52.381 0.00 0.00 0.00 2.24
2704 2760 1.717645 CGCTCGTAACACCACAAGTAC 59.282 52.381 0.00 0.00 0.00 2.73
2705 2761 1.717645 GCTCGTAACACCACAAGTACG 59.282 52.381 0.00 0.00 0.00 3.67
2706 2762 1.717645 CTCGTAACACCACAAGTACGC 59.282 52.381 0.00 0.00 0.00 4.42
2707 2763 1.337703 TCGTAACACCACAAGTACGCT 59.662 47.619 0.00 0.00 0.00 5.07
2708 2764 1.454276 CGTAACACCACAAGTACGCTG 59.546 52.381 0.00 0.00 0.00 5.18
2709 2765 2.746269 GTAACACCACAAGTACGCTGA 58.254 47.619 5.16 0.00 0.00 4.26
2710 2766 1.578583 AACACCACAAGTACGCTGAC 58.421 50.000 5.16 0.00 0.00 3.51
2711 2767 0.462375 ACACCACAAGTACGCTGACA 59.538 50.000 5.16 0.00 0.00 3.58
2712 2768 1.070134 ACACCACAAGTACGCTGACAT 59.930 47.619 5.16 0.00 0.00 3.06
2713 2769 1.726791 CACCACAAGTACGCTGACATC 59.273 52.381 5.16 0.00 0.00 3.06
2714 2770 1.343142 ACCACAAGTACGCTGACATCA 59.657 47.619 5.16 0.00 0.00 3.07
2715 2771 2.028112 ACCACAAGTACGCTGACATCAT 60.028 45.455 5.16 0.00 0.00 2.45
2716 2772 2.604914 CCACAAGTACGCTGACATCATC 59.395 50.000 5.16 0.00 0.00 2.92
2717 2773 3.515630 CACAAGTACGCTGACATCATCT 58.484 45.455 5.16 0.00 0.00 2.90
2718 2774 3.549471 CACAAGTACGCTGACATCATCTC 59.451 47.826 5.16 0.00 0.00 2.75
2719 2775 3.193479 ACAAGTACGCTGACATCATCTCA 59.807 43.478 5.16 0.00 0.00 3.27
2720 2776 3.428746 AGTACGCTGACATCATCTCAC 57.571 47.619 0.00 0.00 0.00 3.51
2721 2777 2.099921 AGTACGCTGACATCATCTCACC 59.900 50.000 0.00 0.00 0.00 4.02
2722 2778 0.179127 ACGCTGACATCATCTCACCG 60.179 55.000 0.00 0.00 0.00 4.94
2723 2779 0.101219 CGCTGACATCATCTCACCGA 59.899 55.000 0.00 0.00 0.00 4.69
2724 2780 1.850377 GCTGACATCATCTCACCGAG 58.150 55.000 0.00 0.00 0.00 4.63
2725 2781 1.406898 GCTGACATCATCTCACCGAGA 59.593 52.381 0.00 0.00 43.20 4.04
2726 2782 2.797792 GCTGACATCATCTCACCGAGAC 60.798 54.545 0.00 0.00 41.76 3.36
2727 2783 2.687425 CTGACATCATCTCACCGAGACT 59.313 50.000 0.00 0.00 41.76 3.24
2728 2784 3.092301 TGACATCATCTCACCGAGACTT 58.908 45.455 0.00 0.00 41.76 3.01
2729 2785 3.129462 TGACATCATCTCACCGAGACTTC 59.871 47.826 0.00 0.00 41.76 3.01
2730 2786 3.092301 ACATCATCTCACCGAGACTTCA 58.908 45.455 0.00 0.00 41.76 3.02
2731 2787 3.703556 ACATCATCTCACCGAGACTTCAT 59.296 43.478 0.00 0.00 41.76 2.57
2732 2788 4.161189 ACATCATCTCACCGAGACTTCATT 59.839 41.667 0.00 0.00 41.76 2.57
2733 2789 5.360999 ACATCATCTCACCGAGACTTCATTA 59.639 40.000 0.00 0.00 41.76 1.90
2734 2790 5.914898 TCATCTCACCGAGACTTCATTAA 57.085 39.130 0.00 0.00 41.76 1.40
2735 2791 5.895928 TCATCTCACCGAGACTTCATTAAG 58.104 41.667 0.00 0.00 41.76 1.85
2746 2802 4.457834 ACTTCATTAAGTCCTGACCGAG 57.542 45.455 0.00 0.00 42.42 4.63
2747 2803 3.833070 ACTTCATTAAGTCCTGACCGAGT 59.167 43.478 0.00 0.00 42.42 4.18
2748 2804 4.283722 ACTTCATTAAGTCCTGACCGAGTT 59.716 41.667 0.00 0.00 42.42 3.01
2749 2805 4.451629 TCATTAAGTCCTGACCGAGTTC 57.548 45.455 0.00 0.00 0.00 3.01
2750 2806 4.087182 TCATTAAGTCCTGACCGAGTTCT 58.913 43.478 0.00 0.00 0.00 3.01
2751 2807 5.258841 TCATTAAGTCCTGACCGAGTTCTA 58.741 41.667 0.00 0.00 0.00 2.10
2752 2808 5.357314 TCATTAAGTCCTGACCGAGTTCTAG 59.643 44.000 0.00 0.00 0.00 2.43
2753 2809 1.465794 AGTCCTGACCGAGTTCTAGC 58.534 55.000 0.00 0.00 0.00 3.42
2754 2810 1.004979 AGTCCTGACCGAGTTCTAGCT 59.995 52.381 0.00 0.00 0.00 3.32
2755 2811 2.239150 AGTCCTGACCGAGTTCTAGCTA 59.761 50.000 0.00 0.00 0.00 3.32
2756 2812 2.355444 GTCCTGACCGAGTTCTAGCTAC 59.645 54.545 0.00 0.00 0.00 3.58
2757 2813 2.026542 TCCTGACCGAGTTCTAGCTACA 60.027 50.000 0.00 0.00 0.00 2.74
2758 2814 2.097791 CCTGACCGAGTTCTAGCTACAC 59.902 54.545 0.00 0.00 0.00 2.90
2759 2815 2.089980 TGACCGAGTTCTAGCTACACC 58.910 52.381 0.00 0.00 0.00 4.16
2760 2816 1.404748 GACCGAGTTCTAGCTACACCC 59.595 57.143 0.00 0.00 0.00 4.61
2761 2817 1.272313 ACCGAGTTCTAGCTACACCCA 60.272 52.381 0.00 0.00 0.00 4.51
2762 2818 1.134560 CCGAGTTCTAGCTACACCCAC 59.865 57.143 0.00 0.00 0.00 4.61
2763 2819 2.093106 CGAGTTCTAGCTACACCCACT 58.907 52.381 0.00 0.00 0.00 4.00
2764 2820 3.276857 CGAGTTCTAGCTACACCCACTA 58.723 50.000 0.00 0.00 0.00 2.74
2765 2821 3.693085 CGAGTTCTAGCTACACCCACTAA 59.307 47.826 0.00 0.00 0.00 2.24
2766 2822 4.201930 CGAGTTCTAGCTACACCCACTAAG 60.202 50.000 0.00 0.00 0.00 2.18
2767 2823 4.675038 AGTTCTAGCTACACCCACTAAGT 58.325 43.478 0.00 0.00 0.00 2.24
2768 2824 5.824421 AGTTCTAGCTACACCCACTAAGTA 58.176 41.667 0.00 0.00 0.00 2.24
2769 2825 6.433441 AGTTCTAGCTACACCCACTAAGTAT 58.567 40.000 0.00 0.00 0.00 2.12
2770 2826 6.321690 AGTTCTAGCTACACCCACTAAGTATG 59.678 42.308 0.00 0.00 0.00 2.39
2771 2827 3.821421 AGCTACACCCACTAAGTATGC 57.179 47.619 0.00 0.00 0.00 3.14
2772 2828 3.104512 AGCTACACCCACTAAGTATGCA 58.895 45.455 0.00 0.00 0.00 3.96
2773 2829 3.118738 AGCTACACCCACTAAGTATGCAC 60.119 47.826 0.00 0.00 0.00 4.57
2774 2830 3.369052 GCTACACCCACTAAGTATGCACA 60.369 47.826 0.00 0.00 0.00 4.57
2775 2831 3.780804 ACACCCACTAAGTATGCACAA 57.219 42.857 0.00 0.00 0.00 3.33
2776 2832 4.301072 ACACCCACTAAGTATGCACAAT 57.699 40.909 0.00 0.00 0.00 2.71
2777 2833 4.261801 ACACCCACTAAGTATGCACAATC 58.738 43.478 0.00 0.00 0.00 2.67
2778 2834 4.019321 ACACCCACTAAGTATGCACAATCT 60.019 41.667 0.00 0.00 0.00 2.40
2779 2835 4.943705 CACCCACTAAGTATGCACAATCTT 59.056 41.667 0.00 0.00 0.00 2.40
2780 2836 5.065218 CACCCACTAAGTATGCACAATCTTC 59.935 44.000 0.00 0.00 0.00 2.87
2781 2837 4.271049 CCCACTAAGTATGCACAATCTTCG 59.729 45.833 0.00 0.00 0.00 3.79
2782 2838 4.870426 CCACTAAGTATGCACAATCTTCGT 59.130 41.667 0.00 0.00 0.00 3.85
2783 2839 6.040247 CCACTAAGTATGCACAATCTTCGTA 58.960 40.000 0.00 0.00 0.00 3.43
2784 2840 6.199154 CCACTAAGTATGCACAATCTTCGTAG 59.801 42.308 0.00 0.00 0.00 3.51
2785 2841 6.199154 CACTAAGTATGCACAATCTTCGTAGG 59.801 42.308 0.00 0.00 0.00 3.18
2786 2842 4.060038 AGTATGCACAATCTTCGTAGGG 57.940 45.455 0.00 0.00 0.00 3.53
2787 2843 3.704566 AGTATGCACAATCTTCGTAGGGA 59.295 43.478 0.00 0.00 0.00 4.20
2788 2844 3.627395 ATGCACAATCTTCGTAGGGAA 57.373 42.857 0.00 0.00 0.00 3.97
2789 2845 3.410631 TGCACAATCTTCGTAGGGAAA 57.589 42.857 0.00 0.00 33.34 3.13
2790 2846 3.950397 TGCACAATCTTCGTAGGGAAAT 58.050 40.909 0.00 0.00 33.34 2.17
2791 2847 5.092554 TGCACAATCTTCGTAGGGAAATA 57.907 39.130 0.00 0.00 33.34 1.40
2792 2848 5.492895 TGCACAATCTTCGTAGGGAAATAA 58.507 37.500 0.00 0.00 33.34 1.40
2793 2849 5.941058 TGCACAATCTTCGTAGGGAAATAAA 59.059 36.000 0.00 0.00 33.34 1.40
2794 2850 6.093495 TGCACAATCTTCGTAGGGAAATAAAG 59.907 38.462 0.00 0.00 33.34 1.85
2795 2851 6.093633 GCACAATCTTCGTAGGGAAATAAAGT 59.906 38.462 0.00 0.00 33.34 2.66
2796 2852 7.676572 GCACAATCTTCGTAGGGAAATAAAGTC 60.677 40.741 0.00 0.00 33.34 3.01
2797 2853 7.549488 CACAATCTTCGTAGGGAAATAAAGTCT 59.451 37.037 0.00 0.00 33.34 3.24
3070 3126 8.931385 AATATGAGCCAATTTACACATGAAAC 57.069 30.769 0.00 0.00 0.00 2.78
3071 3127 6.594788 ATGAGCCAATTTACACATGAAACT 57.405 33.333 0.00 0.00 0.00 2.66
3072 3128 7.701539 ATGAGCCAATTTACACATGAAACTA 57.298 32.000 0.00 0.00 0.00 2.24
3073 3129 7.144722 TGAGCCAATTTACACATGAAACTAG 57.855 36.000 0.00 0.00 0.00 2.57
3074 3130 6.939730 TGAGCCAATTTACACATGAAACTAGA 59.060 34.615 0.00 0.00 0.00 2.43
3075 3131 7.446931 TGAGCCAATTTACACATGAAACTAGAA 59.553 33.333 0.00 0.00 0.00 2.10
3076 3132 8.177119 AGCCAATTTACACATGAAACTAGAAA 57.823 30.769 0.00 0.00 0.00 2.52
3077 3133 8.637986 AGCCAATTTACACATGAAACTAGAAAA 58.362 29.630 0.00 0.00 0.00 2.29
3078 3134 9.255304 GCCAATTTACACATGAAACTAGAAAAA 57.745 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.826428 ACGCGTACTCCTAGACGATAA 58.174 47.619 11.67 0.00 41.60 1.75
1 2 2.515926 ACGCGTACTCCTAGACGATA 57.484 50.000 11.67 0.00 41.60 2.92
3 4 1.405463 TCTACGCGTACTCCTAGACGA 59.595 52.381 16.41 4.87 41.60 4.20
4 5 1.520590 GTCTACGCGTACTCCTAGACG 59.479 57.143 16.41 2.22 41.97 4.18
5 6 1.520590 CGTCTACGCGTACTCCTAGAC 59.479 57.143 21.84 21.84 34.27 2.59
6 7 1.536922 CCGTCTACGCGTACTCCTAGA 60.537 57.143 16.41 9.14 38.18 2.43
7 8 0.857935 CCGTCTACGCGTACTCCTAG 59.142 60.000 16.41 6.48 38.18 3.02
8 9 0.175760 ACCGTCTACGCGTACTCCTA 59.824 55.000 16.41 0.00 38.18 2.94
9 10 0.674895 AACCGTCTACGCGTACTCCT 60.675 55.000 16.41 0.00 38.18 3.69
10 11 0.522076 CAACCGTCTACGCGTACTCC 60.522 60.000 16.41 4.97 38.18 3.85
11 12 0.166814 ACAACCGTCTACGCGTACTC 59.833 55.000 16.41 10.14 38.18 2.59
12 13 0.166814 GACAACCGTCTACGCGTACT 59.833 55.000 16.41 0.00 39.22 2.73
13 14 2.630137 GACAACCGTCTACGCGTAC 58.370 57.895 16.41 8.66 39.22 3.67
22 23 0.782384 CACTTGCGTAGACAACCGTC 59.218 55.000 0.00 0.00 42.95 4.79
23 24 0.386476 TCACTTGCGTAGACAACCGT 59.614 50.000 0.00 0.00 0.00 4.83
24 25 0.782384 GTCACTTGCGTAGACAACCG 59.218 55.000 0.00 0.00 32.68 4.44
25 26 1.792949 CTGTCACTTGCGTAGACAACC 59.207 52.381 0.00 0.00 41.27 3.77
26 27 1.192534 GCTGTCACTTGCGTAGACAAC 59.807 52.381 0.00 0.00 41.27 3.32
27 28 1.068588 AGCTGTCACTTGCGTAGACAA 59.931 47.619 0.00 0.00 41.27 3.18
28 29 0.673985 AGCTGTCACTTGCGTAGACA 59.326 50.000 0.00 0.00 39.74 3.41
29 30 1.063806 CAGCTGTCACTTGCGTAGAC 58.936 55.000 5.25 0.00 0.00 2.59
30 31 0.038251 CCAGCTGTCACTTGCGTAGA 60.038 55.000 13.81 0.00 0.00 2.59
31 32 0.038251 TCCAGCTGTCACTTGCGTAG 60.038 55.000 13.81 0.00 0.00 3.51
32 33 0.391228 TTCCAGCTGTCACTTGCGTA 59.609 50.000 13.81 0.00 0.00 4.42
33 34 0.882042 CTTCCAGCTGTCACTTGCGT 60.882 55.000 13.81 0.00 0.00 5.24
34 35 0.601046 TCTTCCAGCTGTCACTTGCG 60.601 55.000 13.81 0.00 0.00 4.85
35 36 1.467734 CATCTTCCAGCTGTCACTTGC 59.532 52.381 13.81 0.00 0.00 4.01
36 37 3.049708 TCATCTTCCAGCTGTCACTTG 57.950 47.619 13.81 5.00 0.00 3.16
37 38 3.607741 CATCATCTTCCAGCTGTCACTT 58.392 45.455 13.81 0.00 0.00 3.16
38 39 2.680221 GCATCATCTTCCAGCTGTCACT 60.680 50.000 13.81 0.00 0.00 3.41
39 40 1.669779 GCATCATCTTCCAGCTGTCAC 59.330 52.381 13.81 0.00 0.00 3.67
40 41 1.279846 TGCATCATCTTCCAGCTGTCA 59.720 47.619 13.81 0.00 0.00 3.58
41 42 2.034104 TGCATCATCTTCCAGCTGTC 57.966 50.000 13.81 0.00 0.00 3.51
42 43 2.573369 GATGCATCATCTTCCAGCTGT 58.427 47.619 21.92 0.00 37.82 4.40
60 61 4.279169 CCAACCACAAACTCATCACAAGAT 59.721 41.667 0.00 0.00 33.87 2.40
61 62 3.631686 CCAACCACAAACTCATCACAAGA 59.368 43.478 0.00 0.00 0.00 3.02
62 63 3.631686 TCCAACCACAAACTCATCACAAG 59.368 43.478 0.00 0.00 0.00 3.16
63 64 3.625853 TCCAACCACAAACTCATCACAA 58.374 40.909 0.00 0.00 0.00 3.33
64 65 3.213506 CTCCAACCACAAACTCATCACA 58.786 45.455 0.00 0.00 0.00 3.58
65 66 3.214328 ACTCCAACCACAAACTCATCAC 58.786 45.455 0.00 0.00 0.00 3.06
66 67 3.136443 AGACTCCAACCACAAACTCATCA 59.864 43.478 0.00 0.00 0.00 3.07
67 68 3.499918 CAGACTCCAACCACAAACTCATC 59.500 47.826 0.00 0.00 0.00 2.92
68 69 3.136443 TCAGACTCCAACCACAAACTCAT 59.864 43.478 0.00 0.00 0.00 2.90
69 70 2.503765 TCAGACTCCAACCACAAACTCA 59.496 45.455 0.00 0.00 0.00 3.41
70 71 2.872858 GTCAGACTCCAACCACAAACTC 59.127 50.000 0.00 0.00 0.00 3.01
71 72 2.238646 TGTCAGACTCCAACCACAAACT 59.761 45.455 1.31 0.00 0.00 2.66
72 73 2.639065 TGTCAGACTCCAACCACAAAC 58.361 47.619 1.31 0.00 0.00 2.93
73 74 3.358111 TTGTCAGACTCCAACCACAAA 57.642 42.857 1.31 0.00 0.00 2.83
74 75 3.576078 ATTGTCAGACTCCAACCACAA 57.424 42.857 1.31 0.00 0.00 3.33
75 76 3.576078 AATTGTCAGACTCCAACCACA 57.424 42.857 1.31 0.00 0.00 4.17
76 77 4.499696 CCAAAATTGTCAGACTCCAACCAC 60.500 45.833 1.31 0.00 0.00 4.16
77 78 3.636300 CCAAAATTGTCAGACTCCAACCA 59.364 43.478 1.31 0.00 0.00 3.67
78 79 3.636764 ACCAAAATTGTCAGACTCCAACC 59.363 43.478 1.31 0.00 0.00 3.77
79 80 4.918810 ACCAAAATTGTCAGACTCCAAC 57.081 40.909 1.31 0.00 0.00 3.77
80 81 5.163457 GGAAACCAAAATTGTCAGACTCCAA 60.163 40.000 1.31 0.00 0.00 3.53
81 82 4.340950 GGAAACCAAAATTGTCAGACTCCA 59.659 41.667 1.31 0.00 0.00 3.86
82 83 4.584743 AGGAAACCAAAATTGTCAGACTCC 59.415 41.667 1.31 0.00 0.00 3.85
83 84 5.278512 GGAGGAAACCAAAATTGTCAGACTC 60.279 44.000 1.31 0.00 0.00 3.36
84 85 4.584743 GGAGGAAACCAAAATTGTCAGACT 59.415 41.667 1.31 0.00 0.00 3.24
85 86 4.584743 AGGAGGAAACCAAAATTGTCAGAC 59.415 41.667 0.00 0.00 0.00 3.51
86 87 4.803452 AGGAGGAAACCAAAATTGTCAGA 58.197 39.130 0.00 0.00 0.00 3.27
87 88 4.021981 GGAGGAGGAAACCAAAATTGTCAG 60.022 45.833 0.00 0.00 0.00 3.51
88 89 3.895041 GGAGGAGGAAACCAAAATTGTCA 59.105 43.478 0.00 0.00 0.00 3.58
89 90 3.895041 TGGAGGAGGAAACCAAAATTGTC 59.105 43.478 0.00 0.00 0.00 3.18
90 91 3.922375 TGGAGGAGGAAACCAAAATTGT 58.078 40.909 0.00 0.00 0.00 2.71
91 92 4.631131 GTTGGAGGAGGAAACCAAAATTG 58.369 43.478 0.00 0.00 43.74 2.32
92 93 3.320826 CGTTGGAGGAGGAAACCAAAATT 59.679 43.478 0.00 0.00 43.74 1.82
93 94 2.890945 CGTTGGAGGAGGAAACCAAAAT 59.109 45.455 0.00 0.00 43.74 1.82
94 95 2.303175 CGTTGGAGGAGGAAACCAAAA 58.697 47.619 0.00 0.00 43.74 2.44
95 96 1.213430 ACGTTGGAGGAGGAAACCAAA 59.787 47.619 0.00 0.00 43.74 3.28
96 97 0.841289 ACGTTGGAGGAGGAAACCAA 59.159 50.000 0.00 0.00 40.68 3.67
97 98 0.395312 GACGTTGGAGGAGGAAACCA 59.605 55.000 0.00 0.00 0.00 3.67
98 99 0.395312 TGACGTTGGAGGAGGAAACC 59.605 55.000 0.00 0.00 0.00 3.27
99 100 2.474410 ATGACGTTGGAGGAGGAAAC 57.526 50.000 0.00 0.00 0.00 2.78
100 101 3.170717 ACTATGACGTTGGAGGAGGAAA 58.829 45.455 0.00 0.00 0.00 3.13
101 102 2.758979 GACTATGACGTTGGAGGAGGAA 59.241 50.000 0.00 0.00 0.00 3.36
102 103 2.376109 GACTATGACGTTGGAGGAGGA 58.624 52.381 0.00 0.00 0.00 3.71
103 104 1.065701 CGACTATGACGTTGGAGGAGG 59.934 57.143 0.00 0.00 0.00 4.30
104 105 1.743958 ACGACTATGACGTTGGAGGAG 59.256 52.381 0.00 0.00 41.18 3.69
105 106 1.471287 CACGACTATGACGTTGGAGGA 59.529 52.381 0.00 0.00 42.07 3.71
106 107 1.909376 CACGACTATGACGTTGGAGG 58.091 55.000 0.00 0.00 42.07 4.30
107 108 1.269166 GCACGACTATGACGTTGGAG 58.731 55.000 0.00 0.00 42.07 3.86
108 109 0.599060 TGCACGACTATGACGTTGGA 59.401 50.000 0.00 0.00 42.07 3.53
109 110 0.992072 CTGCACGACTATGACGTTGG 59.008 55.000 0.00 0.00 42.07 3.77
110 111 0.992072 CCTGCACGACTATGACGTTG 59.008 55.000 0.00 0.00 42.07 4.10
111 112 0.885879 TCCTGCACGACTATGACGTT 59.114 50.000 0.00 0.00 42.07 3.99
112 113 0.452184 CTCCTGCACGACTATGACGT 59.548 55.000 0.00 0.00 44.83 4.34
113 114 0.452184 ACTCCTGCACGACTATGACG 59.548 55.000 0.00 0.00 0.00 4.35
114 115 1.202582 ACACTCCTGCACGACTATGAC 59.797 52.381 0.00 0.00 0.00 3.06
115 116 1.472878 GACACTCCTGCACGACTATGA 59.527 52.381 0.00 0.00 0.00 2.15
116 117 1.202348 TGACACTCCTGCACGACTATG 59.798 52.381 0.00 0.00 0.00 2.23
117 118 1.474478 CTGACACTCCTGCACGACTAT 59.526 52.381 0.00 0.00 0.00 2.12
118 119 0.881796 CTGACACTCCTGCACGACTA 59.118 55.000 0.00 0.00 0.00 2.59
119 120 1.109920 ACTGACACTCCTGCACGACT 61.110 55.000 0.00 0.00 0.00 4.18
120 121 0.249489 AACTGACACTCCTGCACGAC 60.249 55.000 0.00 0.00 0.00 4.34
121 122 0.032130 GAACTGACACTCCTGCACGA 59.968 55.000 0.00 0.00 0.00 4.35
122 123 0.032678 AGAACTGACACTCCTGCACG 59.967 55.000 0.00 0.00 0.00 5.34
123 124 1.506493 CAGAACTGACACTCCTGCAC 58.494 55.000 0.00 0.00 0.00 4.57
124 125 0.394192 CCAGAACTGACACTCCTGCA 59.606 55.000 3.19 0.00 0.00 4.41
125 126 0.681733 TCCAGAACTGACACTCCTGC 59.318 55.000 3.19 0.00 0.00 4.85
126 127 1.967066 ACTCCAGAACTGACACTCCTG 59.033 52.381 3.19 0.00 0.00 3.86
127 128 2.390225 ACTCCAGAACTGACACTCCT 57.610 50.000 3.19 0.00 0.00 3.69
128 129 2.608261 CGAACTCCAGAACTGACACTCC 60.608 54.545 3.19 0.00 0.00 3.85
129 130 2.293677 TCGAACTCCAGAACTGACACTC 59.706 50.000 3.19 0.00 0.00 3.51
130 131 2.307768 TCGAACTCCAGAACTGACACT 58.692 47.619 3.19 0.00 0.00 3.55
131 132 2.795175 TCGAACTCCAGAACTGACAC 57.205 50.000 3.19 0.00 0.00 3.67
132 133 2.029020 CCATCGAACTCCAGAACTGACA 60.029 50.000 3.19 0.00 0.00 3.58
133 134 2.028930 ACCATCGAACTCCAGAACTGAC 60.029 50.000 3.19 0.00 0.00 3.51
134 135 2.248248 ACCATCGAACTCCAGAACTGA 58.752 47.619 3.19 0.00 0.00 3.41
135 136 2.751166 ACCATCGAACTCCAGAACTG 57.249 50.000 0.00 0.00 0.00 3.16
136 137 3.769844 ACATACCATCGAACTCCAGAACT 59.230 43.478 0.00 0.00 0.00 3.01
137 138 4.113354 GACATACCATCGAACTCCAGAAC 58.887 47.826 0.00 0.00 0.00 3.01
138 139 3.132289 GGACATACCATCGAACTCCAGAA 59.868 47.826 0.00 0.00 38.79 3.02
139 140 2.693591 GGACATACCATCGAACTCCAGA 59.306 50.000 0.00 0.00 38.79 3.86
140 141 2.430694 TGGACATACCATCGAACTCCAG 59.569 50.000 0.00 0.00 44.64 3.86
141 142 2.462723 TGGACATACCATCGAACTCCA 58.537 47.619 0.00 0.00 44.64 3.86
157 158 1.678970 GGGCAACATGTCCCTGGAC 60.679 63.158 14.14 9.44 35.72 4.02
158 159 2.763215 GGGCAACATGTCCCTGGA 59.237 61.111 14.14 0.00 35.72 3.86
163 164 1.906105 TAGACCGGGGCAACATGTCC 61.906 60.000 6.32 0.00 42.67 4.02
164 165 0.035820 TTAGACCGGGGCAACATGTC 60.036 55.000 6.32 0.00 39.74 3.06
165 166 0.623723 ATTAGACCGGGGCAACATGT 59.376 50.000 6.32 0.00 39.74 3.21
166 167 1.676006 GAATTAGACCGGGGCAACATG 59.324 52.381 6.32 0.00 39.74 3.21
167 168 1.564348 AGAATTAGACCGGGGCAACAT 59.436 47.619 6.32 0.00 39.74 2.71
168 169 0.988832 AGAATTAGACCGGGGCAACA 59.011 50.000 6.32 0.00 39.74 3.33
169 170 2.124277 AAGAATTAGACCGGGGCAAC 57.876 50.000 6.32 0.00 0.00 4.17
170 171 2.040545 TGAAAGAATTAGACCGGGGCAA 59.959 45.455 6.32 0.00 0.00 4.52
171 172 1.631388 TGAAAGAATTAGACCGGGGCA 59.369 47.619 6.32 0.00 0.00 5.36
172 173 2.413310 TGAAAGAATTAGACCGGGGC 57.587 50.000 6.32 0.00 0.00 5.80
173 174 2.676342 CGTTGAAAGAATTAGACCGGGG 59.324 50.000 6.32 0.00 0.00 5.73
174 175 2.676342 CCGTTGAAAGAATTAGACCGGG 59.324 50.000 6.32 0.00 0.00 5.73
175 176 2.095372 GCCGTTGAAAGAATTAGACCGG 59.905 50.000 0.00 0.00 0.00 5.28
176 177 2.739913 TGCCGTTGAAAGAATTAGACCG 59.260 45.455 0.00 0.00 0.00 4.79
177 178 4.759516 TTGCCGTTGAAAGAATTAGACC 57.240 40.909 0.00 0.00 0.00 3.85
178 179 5.095490 CCATTGCCGTTGAAAGAATTAGAC 58.905 41.667 0.00 0.00 0.00 2.59
179 180 4.764823 ACCATTGCCGTTGAAAGAATTAGA 59.235 37.500 0.00 0.00 0.00 2.10
180 181 5.059404 ACCATTGCCGTTGAAAGAATTAG 57.941 39.130 0.00 0.00 0.00 1.73
181 182 5.461032 AACCATTGCCGTTGAAAGAATTA 57.539 34.783 0.00 0.00 0.00 1.40
182 183 4.335400 AACCATTGCCGTTGAAAGAATT 57.665 36.364 0.00 0.00 0.00 2.17
183 184 4.335400 AAACCATTGCCGTTGAAAGAAT 57.665 36.364 0.00 0.00 0.00 2.40
184 185 3.810310 AAACCATTGCCGTTGAAAGAA 57.190 38.095 0.00 0.00 0.00 2.52
185 186 3.452474 CAAAACCATTGCCGTTGAAAGA 58.548 40.909 0.00 0.00 0.00 2.52
186 187 2.032979 GCAAAACCATTGCCGTTGAAAG 60.033 45.455 1.80 0.00 39.38 2.62
187 188 1.936547 GCAAAACCATTGCCGTTGAAA 59.063 42.857 1.80 0.00 39.38 2.69
188 189 1.137872 AGCAAAACCATTGCCGTTGAA 59.862 42.857 9.37 0.00 45.98 2.69
189 190 0.749649 AGCAAAACCATTGCCGTTGA 59.250 45.000 9.37 0.00 45.98 3.18
190 191 1.526464 GAAGCAAAACCATTGCCGTTG 59.474 47.619 9.37 0.00 45.98 4.10
191 192 1.137872 TGAAGCAAAACCATTGCCGTT 59.862 42.857 9.37 0.00 45.98 4.44
192 193 0.749649 TGAAGCAAAACCATTGCCGT 59.250 45.000 9.37 0.00 45.98 5.68
193 194 1.794116 CTTGAAGCAAAACCATTGCCG 59.206 47.619 9.37 0.00 45.98 5.69
194 195 1.532437 GCTTGAAGCAAAACCATTGCC 59.468 47.619 13.09 0.00 45.98 4.52
195 196 2.955607 GCTTGAAGCAAAACCATTGC 57.044 45.000 13.09 5.06 41.89 3.56
206 207 4.978580 CCTTCAAAGTAGTTTGCTTGAAGC 59.021 41.667 16.77 10.84 42.55 3.86
207 208 6.038714 AGACCTTCAAAGTAGTTTGCTTGAAG 59.961 38.462 16.77 14.40 42.55 3.02
208 209 5.885912 AGACCTTCAAAGTAGTTTGCTTGAA 59.114 36.000 16.77 6.57 42.55 2.69
209 210 5.296780 CAGACCTTCAAAGTAGTTTGCTTGA 59.703 40.000 16.77 0.00 42.55 3.02
210 211 5.066505 ACAGACCTTCAAAGTAGTTTGCTTG 59.933 40.000 16.77 10.02 42.55 4.01
211 212 5.193679 ACAGACCTTCAAAGTAGTTTGCTT 58.806 37.500 16.77 2.48 42.55 3.91
212 213 4.781934 ACAGACCTTCAAAGTAGTTTGCT 58.218 39.130 16.77 6.28 42.55 3.91
213 214 6.613755 TTACAGACCTTCAAAGTAGTTTGC 57.386 37.500 16.77 4.23 42.55 3.68
214 215 7.012421 AGCTTTACAGACCTTCAAAGTAGTTTG 59.988 37.037 15.66 15.66 43.96 2.93
215 216 7.054751 AGCTTTACAGACCTTCAAAGTAGTTT 58.945 34.615 0.00 0.00 31.95 2.66
216 217 6.592870 AGCTTTACAGACCTTCAAAGTAGTT 58.407 36.000 0.00 0.00 31.95 2.24
217 218 6.176014 AGCTTTACAGACCTTCAAAGTAGT 57.824 37.500 0.00 0.00 31.95 2.73
218 219 8.660373 CAATAGCTTTACAGACCTTCAAAGTAG 58.340 37.037 0.00 0.00 31.95 2.57
219 220 8.372459 TCAATAGCTTTACAGACCTTCAAAGTA 58.628 33.333 0.00 0.00 31.95 2.24
220 221 7.224297 TCAATAGCTTTACAGACCTTCAAAGT 58.776 34.615 0.00 0.00 31.95 2.66
221 222 7.672983 TCAATAGCTTTACAGACCTTCAAAG 57.327 36.000 0.00 0.00 0.00 2.77
222 223 7.882791 TGATCAATAGCTTTACAGACCTTCAAA 59.117 33.333 0.00 0.00 0.00 2.69
223 224 7.394016 TGATCAATAGCTTTACAGACCTTCAA 58.606 34.615 0.00 0.00 0.00 2.69
224 225 6.946340 TGATCAATAGCTTTACAGACCTTCA 58.054 36.000 0.00 0.00 0.00 3.02
225 226 6.018343 GCTGATCAATAGCTTTACAGACCTTC 60.018 42.308 0.00 0.00 38.14 3.46
226 227 5.819901 GCTGATCAATAGCTTTACAGACCTT 59.180 40.000 0.00 0.00 38.14 3.50
227 228 5.363939 GCTGATCAATAGCTTTACAGACCT 58.636 41.667 0.00 0.00 38.14 3.85
228 229 4.210120 CGCTGATCAATAGCTTTACAGACC 59.790 45.833 0.00 0.00 39.00 3.85
229 230 5.043903 TCGCTGATCAATAGCTTTACAGAC 58.956 41.667 0.00 0.00 39.00 3.51
230 231 5.262588 TCGCTGATCAATAGCTTTACAGA 57.737 39.130 0.00 0.00 39.00 3.41
231 232 5.107182 CCATCGCTGATCAATAGCTTTACAG 60.107 44.000 0.00 0.00 39.00 2.74
232 233 4.751600 CCATCGCTGATCAATAGCTTTACA 59.248 41.667 0.00 0.00 39.00 2.41
233 234 4.991056 TCCATCGCTGATCAATAGCTTTAC 59.009 41.667 0.00 0.00 39.00 2.01
234 235 5.213891 TCCATCGCTGATCAATAGCTTTA 57.786 39.130 0.00 0.00 39.00 1.85
235 236 4.063689 CTCCATCGCTGATCAATAGCTTT 58.936 43.478 0.00 0.00 39.00 3.51
236 237 3.661944 CTCCATCGCTGATCAATAGCTT 58.338 45.455 0.00 0.00 39.00 3.74
237 238 2.612471 GCTCCATCGCTGATCAATAGCT 60.612 50.000 0.00 0.00 39.00 3.32
238 239 1.731160 GCTCCATCGCTGATCAATAGC 59.269 52.381 0.00 0.00 37.80 2.97
239 240 2.344950 GGCTCCATCGCTGATCAATAG 58.655 52.381 0.00 0.00 0.00 1.73
240 241 1.337167 CGGCTCCATCGCTGATCAATA 60.337 52.381 0.00 0.00 38.57 1.90
241 242 0.602106 CGGCTCCATCGCTGATCAAT 60.602 55.000 0.00 0.00 38.57 2.57
242 243 1.227350 CGGCTCCATCGCTGATCAA 60.227 57.895 0.00 0.00 38.57 2.57
243 244 2.418777 CGGCTCCATCGCTGATCA 59.581 61.111 0.00 0.00 38.57 2.92
262 263 3.354499 CTTTTCAGCCGCGCTCGAC 62.354 63.158 5.56 0.00 36.40 4.20
263 264 2.835701 ATCTTTTCAGCCGCGCTCGA 62.836 55.000 5.56 0.00 36.40 4.04
264 265 2.456119 ATCTTTTCAGCCGCGCTCG 61.456 57.895 5.56 0.00 36.40 5.03
265 266 1.061570 CATCTTTTCAGCCGCGCTC 59.938 57.895 5.56 0.00 36.40 5.03
266 267 0.745845 ATCATCTTTTCAGCCGCGCT 60.746 50.000 5.56 0.00 40.77 5.92
267 268 0.937304 TATCATCTTTTCAGCCGCGC 59.063 50.000 0.00 0.00 0.00 6.86
268 269 2.545526 ACATATCATCTTTTCAGCCGCG 59.454 45.455 0.00 0.00 0.00 6.46
269 270 3.812053 AGACATATCATCTTTTCAGCCGC 59.188 43.478 0.00 0.00 0.00 6.53
270 271 5.052481 TGAGACATATCATCTTTTCAGCCG 58.948 41.667 0.00 0.00 0.00 5.52
271 272 7.507733 AATGAGACATATCATCTTTTCAGCC 57.492 36.000 0.00 0.00 39.00 4.85
272 273 9.798994 AAAAATGAGACATATCATCTTTTCAGC 57.201 29.630 0.00 0.00 39.00 4.26
282 283 9.605275 CTCCACTAAGAAAAATGAGACATATCA 57.395 33.333 0.00 0.00 0.00 2.15
283 284 9.823647 TCTCCACTAAGAAAAATGAGACATATC 57.176 33.333 0.00 0.00 0.00 1.63
284 285 9.829507 CTCTCCACTAAGAAAAATGAGACATAT 57.170 33.333 0.00 0.00 0.00 1.78
285 286 8.260818 CCTCTCCACTAAGAAAAATGAGACATA 58.739 37.037 0.00 0.00 0.00 2.29
286 287 7.108847 CCTCTCCACTAAGAAAAATGAGACAT 58.891 38.462 0.00 0.00 0.00 3.06
287 288 6.467677 CCTCTCCACTAAGAAAAATGAGACA 58.532 40.000 0.00 0.00 0.00 3.41
288 289 5.877564 CCCTCTCCACTAAGAAAAATGAGAC 59.122 44.000 0.00 0.00 0.00 3.36
289 290 5.785423 TCCCTCTCCACTAAGAAAAATGAGA 59.215 40.000 0.00 0.00 0.00 3.27
290 291 5.877564 GTCCCTCTCCACTAAGAAAAATGAG 59.122 44.000 0.00 0.00 0.00 2.90
291 292 5.309543 TGTCCCTCTCCACTAAGAAAAATGA 59.690 40.000 0.00 0.00 0.00 2.57
292 293 5.560724 TGTCCCTCTCCACTAAGAAAAATG 58.439 41.667 0.00 0.00 0.00 2.32
293 294 5.280727 CCTGTCCCTCTCCACTAAGAAAAAT 60.281 44.000 0.00 0.00 0.00 1.82
294 295 4.041691 CCTGTCCCTCTCCACTAAGAAAAA 59.958 45.833 0.00 0.00 0.00 1.94
295 296 3.583086 CCTGTCCCTCTCCACTAAGAAAA 59.417 47.826 0.00 0.00 0.00 2.29
296 297 3.173965 CCTGTCCCTCTCCACTAAGAAA 58.826 50.000 0.00 0.00 0.00 2.52
297 298 2.559931 CCCTGTCCCTCTCCACTAAGAA 60.560 54.545 0.00 0.00 0.00 2.52
298 299 1.007238 CCCTGTCCCTCTCCACTAAGA 59.993 57.143 0.00 0.00 0.00 2.10
299 300 1.273324 ACCCTGTCCCTCTCCACTAAG 60.273 57.143 0.00 0.00 0.00 2.18
300 301 0.790993 ACCCTGTCCCTCTCCACTAA 59.209 55.000 0.00 0.00 0.00 2.24
301 302 0.335361 GACCCTGTCCCTCTCCACTA 59.665 60.000 0.00 0.00 0.00 2.74
302 303 1.079438 GACCCTGTCCCTCTCCACT 59.921 63.158 0.00 0.00 0.00 4.00
303 304 1.079438 AGACCCTGTCCCTCTCCAC 59.921 63.158 0.00 0.00 32.18 4.02
304 305 1.079256 CAGACCCTGTCCCTCTCCA 59.921 63.158 0.00 0.00 32.18 3.86
305 306 1.687493 CCAGACCCTGTCCCTCTCC 60.687 68.421 0.00 0.00 32.18 3.71
306 307 0.545548 AACCAGACCCTGTCCCTCTC 60.546 60.000 0.00 0.00 32.18 3.20
307 308 0.104409 AAACCAGACCCTGTCCCTCT 60.104 55.000 0.00 0.00 32.18 3.69
308 309 0.771755 AAAACCAGACCCTGTCCCTC 59.228 55.000 0.00 0.00 32.18 4.30
309 310 1.231963 AAAAACCAGACCCTGTCCCT 58.768 50.000 0.00 0.00 32.18 4.20
310 311 3.842069 AAAAACCAGACCCTGTCCC 57.158 52.632 0.00 0.00 32.18 4.46
338 339 9.988815 GACATTACACAACTGAATAGATAGGAT 57.011 33.333 0.00 0.00 0.00 3.24
339 340 8.135529 CGACATTACACAACTGAATAGATAGGA 58.864 37.037 0.00 0.00 0.00 2.94
340 341 8.135529 TCGACATTACACAACTGAATAGATAGG 58.864 37.037 0.00 0.00 0.00 2.57
341 342 9.684448 ATCGACATTACACAACTGAATAGATAG 57.316 33.333 0.00 0.00 0.00 2.08
342 343 9.463443 CATCGACATTACACAACTGAATAGATA 57.537 33.333 0.00 0.00 0.00 1.98
343 344 7.981789 ACATCGACATTACACAACTGAATAGAT 59.018 33.333 0.00 0.00 0.00 1.98
344 345 7.320399 ACATCGACATTACACAACTGAATAGA 58.680 34.615 0.00 0.00 0.00 1.98
345 346 7.525688 ACATCGACATTACACAACTGAATAG 57.474 36.000 0.00 0.00 0.00 1.73
346 347 7.899178 AACATCGACATTACACAACTGAATA 57.101 32.000 0.00 0.00 0.00 1.75
347 348 6.801539 AACATCGACATTACACAACTGAAT 57.198 33.333 0.00 0.00 0.00 2.57
348 349 6.612247 AAACATCGACATTACACAACTGAA 57.388 33.333 0.00 0.00 0.00 3.02
349 350 6.702282 TGTAAACATCGACATTACACAACTGA 59.298 34.615 12.79 0.00 35.30 3.41
350 351 6.883129 TGTAAACATCGACATTACACAACTG 58.117 36.000 12.79 0.00 35.30 3.16
351 352 7.386573 TCATGTAAACATCGACATTACACAACT 59.613 33.333 16.94 4.26 40.98 3.16
352 353 7.477422 GTCATGTAAACATCGACATTACACAAC 59.523 37.037 16.94 14.44 40.98 3.32
353 354 7.386573 AGTCATGTAAACATCGACATTACACAA 59.613 33.333 16.94 8.99 40.98 3.33
354 355 6.871492 AGTCATGTAAACATCGACATTACACA 59.129 34.615 16.94 9.61 40.98 3.72
355 356 7.290857 AGTCATGTAAACATCGACATTACAC 57.709 36.000 16.94 8.66 40.98 2.90
356 357 7.899178 AAGTCATGTAAACATCGACATTACA 57.101 32.000 16.93 16.93 42.00 2.41
359 360 9.607285 GTTAAAAGTCATGTAAACATCGACATT 57.393 29.630 18.91 13.93 37.11 2.71
360 361 8.999431 AGTTAAAAGTCATGTAAACATCGACAT 58.001 29.630 18.91 10.50 37.11 3.06
361 362 8.279800 CAGTTAAAAGTCATGTAAACATCGACA 58.720 33.333 18.91 0.00 37.11 4.35
362 363 8.492748 TCAGTTAAAAGTCATGTAAACATCGAC 58.507 33.333 13.31 13.31 36.04 4.20
363 364 8.596271 TCAGTTAAAAGTCATGTAAACATCGA 57.404 30.769 0.00 0.00 33.61 3.59
364 365 9.825972 ATTCAGTTAAAAGTCATGTAAACATCG 57.174 29.630 0.00 0.00 33.61 3.84
427 428 6.015688 TCACTCTCATACACGGTACTCTTTTT 60.016 38.462 0.00 0.00 0.00 1.94
428 429 5.475909 TCACTCTCATACACGGTACTCTTTT 59.524 40.000 0.00 0.00 0.00 2.27
429 430 5.008331 TCACTCTCATACACGGTACTCTTT 58.992 41.667 0.00 0.00 0.00 2.52
430 431 4.586884 TCACTCTCATACACGGTACTCTT 58.413 43.478 0.00 0.00 0.00 2.85
431 432 4.081031 TCTCACTCTCATACACGGTACTCT 60.081 45.833 0.00 0.00 0.00 3.24
432 433 4.034279 GTCTCACTCTCATACACGGTACTC 59.966 50.000 0.00 0.00 0.00 2.59
448 449 6.554982 TGCACTATTTGGATATAGGTCTCACT 59.445 38.462 0.00 0.00 33.33 3.41
452 453 5.846714 ACCTGCACTATTTGGATATAGGTCT 59.153 40.000 0.00 0.00 33.33 3.85
453 454 6.115448 ACCTGCACTATTTGGATATAGGTC 57.885 41.667 0.00 0.00 33.33 3.85
454 455 6.295123 CGTACCTGCACTATTTGGATATAGGT 60.295 42.308 0.00 0.00 39.23 3.08
456 457 6.688578 ACGTACCTGCACTATTTGGATATAG 58.311 40.000 0.00 0.00 34.85 1.31
457 458 6.659745 ACGTACCTGCACTATTTGGATATA 57.340 37.500 0.00 0.00 0.00 0.86
458 459 5.546621 ACGTACCTGCACTATTTGGATAT 57.453 39.130 0.00 0.00 0.00 1.63
462 463 3.749088 TCAAACGTACCTGCACTATTTGG 59.251 43.478 0.00 0.00 0.00 3.28
481 482 2.106074 GCGTCGGTGCATGGATCAA 61.106 57.895 0.00 0.00 34.15 2.57
499 500 3.146618 AGTGCTCGTACATCCGTTTAG 57.853 47.619 0.00 0.00 0.00 1.85
506 507 1.128692 GCAACCAAGTGCTCGTACATC 59.871 52.381 0.00 0.00 41.51 3.06
507 508 1.156736 GCAACCAAGTGCTCGTACAT 58.843 50.000 0.00 0.00 41.51 2.29
527 528 5.379732 AGAGTGGAAACTTAAGAGACGAG 57.620 43.478 10.09 0.00 0.00 4.18
548 549 2.000447 GCACCACTAAGTAAGCCGAAG 59.000 52.381 0.00 0.00 0.00 3.79
552 553 3.933332 CAGTTAGCACCACTAAGTAAGCC 59.067 47.826 0.00 0.00 41.68 4.35
553 554 3.933332 CCAGTTAGCACCACTAAGTAAGC 59.067 47.826 0.00 0.00 41.68 3.09
554 555 5.401531 TCCAGTTAGCACCACTAAGTAAG 57.598 43.478 0.00 0.00 41.68 2.34
555 556 4.322499 GCTCCAGTTAGCACCACTAAGTAA 60.322 45.833 0.00 0.00 41.68 2.24
556 557 3.194968 GCTCCAGTTAGCACCACTAAGTA 59.805 47.826 0.00 0.00 41.68 2.24
557 558 2.028020 GCTCCAGTTAGCACCACTAAGT 60.028 50.000 0.00 0.00 43.93 2.24
558 559 2.622436 GCTCCAGTTAGCACCACTAAG 58.378 52.381 0.00 0.00 41.56 2.18
559 560 1.278127 GGCTCCAGTTAGCACCACTAA 59.722 52.381 0.00 0.00 44.64 2.24
560 561 0.902531 GGCTCCAGTTAGCACCACTA 59.097 55.000 0.00 0.00 44.64 2.74
561 562 0.838122 AGGCTCCAGTTAGCACCACT 60.838 55.000 0.00 0.00 44.64 4.00
562 563 0.674895 CAGGCTCCAGTTAGCACCAC 60.675 60.000 0.00 0.00 44.64 4.16
598 599 2.323968 TCGATCATTGGCGATTTGGA 57.676 45.000 0.00 0.00 0.00 3.53
626 627 1.134699 TCATGGGCATGACTCTCGAAC 60.135 52.381 0.00 0.00 42.42 3.95
671 673 2.774234 TGGTCCTCATGATCCCTTTCTC 59.226 50.000 0.00 0.00 0.00 2.87
963 965 0.107945 GAGCGGTGGCAGAAGAGAAT 60.108 55.000 0.00 0.00 43.41 2.40
986 988 2.097304 CACTCCATCAGACGAGAGAGTG 59.903 54.545 3.81 3.81 43.34 3.51
987 989 2.364632 CACTCCATCAGACGAGAGAGT 58.635 52.381 3.75 0.00 37.74 3.24
1027 1048 2.359602 AGCGGACGAGGACGAAGA 60.360 61.111 0.00 0.00 42.66 2.87
1028 1049 2.100603 GAGCGGACGAGGACGAAG 59.899 66.667 0.00 0.00 42.66 3.79
1029 1050 3.437795 GGAGCGGACGAGGACGAA 61.438 66.667 0.00 0.00 42.66 3.85
1044 1065 2.975489 GCTATCCATGGAAGAAGAGGGA 59.025 50.000 20.67 0.00 0.00 4.20
1129 1150 1.079127 CCGTGCTTAGGTCCCTGTG 60.079 63.158 0.00 0.00 0.00 3.66
1136 1157 0.320697 GTGAAGGTCCGTGCTTAGGT 59.679 55.000 0.00 0.00 0.00 3.08
1237 1258 6.863275 TCTGAGATAAAATTACGAGTCTGCA 58.137 36.000 0.00 0.00 0.00 4.41
1238 1259 7.757097 TTCTGAGATAAAATTACGAGTCTGC 57.243 36.000 0.00 0.00 0.00 4.26
1287 1309 1.686325 GGAGCCAGAGCCGACCAATA 61.686 60.000 0.00 0.00 41.25 1.90
1290 1312 4.704103 AGGAGCCAGAGCCGACCA 62.704 66.667 0.00 0.00 41.25 4.02
1337 1360 0.611714 GGGTGCTCCTAAGAAACGGA 59.388 55.000 4.53 0.00 0.00 4.69
1394 1421 1.843734 CTCTCTCGTACGCCGGATCC 61.844 65.000 11.24 0.00 37.11 3.36
1445 1475 4.335416 CCTCCATGTACACCTTCACAAAT 58.665 43.478 0.00 0.00 0.00 2.32
1649 1695 7.560368 GGTATCCGGATCTAGATTGAATGAAT 58.440 38.462 23.08 0.00 0.00 2.57
1650 1696 6.350194 CGGTATCCGGATCTAGATTGAATGAA 60.350 42.308 23.08 0.00 44.15 2.57
1651 1697 5.125578 CGGTATCCGGATCTAGATTGAATGA 59.874 44.000 23.08 0.00 44.15 2.57
1652 1698 5.344066 CGGTATCCGGATCTAGATTGAATG 58.656 45.833 23.08 0.00 44.15 2.67
1653 1699 5.584253 CGGTATCCGGATCTAGATTGAAT 57.416 43.478 23.08 0.00 44.15 2.57
1756 1802 4.838152 CACGTCCCCGGCCATCAG 62.838 72.222 2.24 0.00 38.78 2.90
1829 1875 5.248248 TCTGTGGAATTAGTGTGAGATGGAA 59.752 40.000 0.00 0.00 0.00 3.53
1830 1876 4.777366 TCTGTGGAATTAGTGTGAGATGGA 59.223 41.667 0.00 0.00 0.00 3.41
1831 1877 4.872691 GTCTGTGGAATTAGTGTGAGATGG 59.127 45.833 0.00 0.00 0.00 3.51
1841 1887 7.227512 AGTTCAAACTCAAGTCTGTGGAATTAG 59.772 37.037 0.00 0.00 32.86 1.73
1873 1919 3.911964 GTCCACACGTTTTGTATCATTGC 59.088 43.478 0.00 0.00 35.67 3.56
1881 1927 4.260456 CGAAGTATTGTCCACACGTTTTGT 60.260 41.667 0.00 0.00 39.97 2.83
1895 1941 6.449635 TTTGATTTGATCCCCGAAGTATTG 57.550 37.500 0.00 0.00 0.00 1.90
1896 1942 7.491682 CAATTTGATTTGATCCCCGAAGTATT 58.508 34.615 0.00 0.00 0.00 1.89
1904 1950 2.159057 AGCGCAATTTGATTTGATCCCC 60.159 45.455 11.47 0.00 0.00 4.81
1915 1962 6.489675 ACAAAGATGTATAGAGCGCAATTTG 58.510 36.000 11.47 5.76 38.24 2.32
1994 2041 4.531732 AGCCTGCCCAAAGAATCATTTAAA 59.468 37.500 0.00 0.00 0.00 1.52
1997 2044 2.543635 AGCCTGCCCAAAGAATCATTT 58.456 42.857 0.00 0.00 0.00 2.32
2170 2217 1.294659 GCAGCCGACTTCACCAAGAG 61.295 60.000 0.00 0.00 33.34 2.85
2211 2258 3.950397 TCAAGAATATGTCCCGCACTTT 58.050 40.909 0.00 0.00 0.00 2.66
2265 2315 6.432403 TGGCATTTGAAGGGAAAATAGTTT 57.568 33.333 0.00 0.00 0.00 2.66
2268 2318 6.475596 AGATGGCATTTGAAGGGAAAATAG 57.524 37.500 0.00 0.00 0.00 1.73
2276 2327 9.223099 AGAAAAATAAAAGATGGCATTTGAAGG 57.777 29.630 0.00 0.00 0.00 3.46
2285 2336 5.582550 CGGAGGAGAAAAATAAAAGATGGC 58.417 41.667 0.00 0.00 0.00 4.40
2286 2337 5.582550 GCGGAGGAGAAAAATAAAAGATGG 58.417 41.667 0.00 0.00 0.00 3.51
2287 2338 5.266242 CGCGGAGGAGAAAAATAAAAGATG 58.734 41.667 0.00 0.00 0.00 2.90
2291 2342 2.162809 GCCGCGGAGGAGAAAAATAAAA 59.837 45.455 33.48 0.00 45.00 1.52
2296 2347 1.671054 CAGCCGCGGAGGAGAAAAA 60.671 57.895 33.48 0.00 45.00 1.94
2307 2358 0.809636 TATTCATGGTGTCAGCCGCG 60.810 55.000 0.00 0.00 0.00 6.46
2309 2360 4.257267 TCTATATTCATGGTGTCAGCCG 57.743 45.455 0.00 0.00 0.00 5.52
2319 2370 8.417106 AGCCGGTATACTTGATCTATATTCATG 58.583 37.037 1.90 0.00 0.00 3.07
2338 2389 2.038033 AGTGAGTTTTAGCAAGCCGGTA 59.962 45.455 1.90 0.00 0.00 4.02
2339 2390 1.202770 AGTGAGTTTTAGCAAGCCGGT 60.203 47.619 1.90 0.00 0.00 5.28
2340 2391 1.464997 GAGTGAGTTTTAGCAAGCCGG 59.535 52.381 0.00 0.00 0.00 6.13
2341 2392 2.143122 TGAGTGAGTTTTAGCAAGCCG 58.857 47.619 0.00 0.00 0.00 5.52
2391 2442 5.760253 CCATGAAAAGATCTAACGGCTATGT 59.240 40.000 0.00 0.00 0.00 2.29
2405 2456 4.219070 CCAGCACAAATCTCCATGAAAAGA 59.781 41.667 0.00 0.00 0.00 2.52
2410 2461 2.306805 AGTCCAGCACAAATCTCCATGA 59.693 45.455 0.00 0.00 0.00 3.07
2433 2484 2.750237 GGTCCGTTGGATGGTGCC 60.750 66.667 0.00 0.00 32.73 5.01
2439 2490 0.035439 AAATGCGAGGTCCGTTGGAT 60.035 50.000 0.00 0.00 41.15 3.41
2446 2497 1.068541 GTGGAACAAAATGCGAGGTCC 60.069 52.381 0.00 0.00 44.16 4.46
2462 2516 0.529773 GATATGCTGCGAACGGTGGA 60.530 55.000 0.00 0.00 0.00 4.02
2471 2525 1.563435 CGCCAGGAAGATATGCTGCG 61.563 60.000 0.00 0.00 45.47 5.18
2475 2529 0.947244 CAACCGCCAGGAAGATATGC 59.053 55.000 0.00 0.00 41.02 3.14
2484 2538 0.101040 CATATGTTGCAACCGCCAGG 59.899 55.000 26.14 7.05 45.13 4.45
2488 2542 0.526096 CAGCCATATGTTGCAACCGC 60.526 55.000 26.14 18.06 39.24 5.68
2497 2551 3.733337 GCTACAACTAGCAGCCATATGT 58.267 45.455 1.24 0.00 44.45 2.29
2510 2565 3.338249 GGTGTGATGACATGCTACAACT 58.662 45.455 0.00 0.00 33.63 3.16
2524 2579 0.960364 GATGTTGTGCCCGGTGTGAT 60.960 55.000 0.00 0.00 0.00 3.06
2527 2582 1.600636 CAGATGTTGTGCCCGGTGT 60.601 57.895 0.00 0.00 0.00 4.16
2556 2611 3.740818 CGGTGGGACGACATGGTACAG 62.741 61.905 0.00 0.00 37.80 2.74
2583 2638 2.172679 TGCAACCATCAATGCAGATGT 58.827 42.857 13.23 1.72 46.87 3.06
2604 2660 6.127423 ACGCTACATCTGGAGTAACTAAATGT 60.127 38.462 0.00 0.00 0.00 2.71
2613 2669 1.306148 CGGACGCTACATCTGGAGTA 58.694 55.000 0.00 0.00 0.00 2.59
2616 2672 0.172578 CAACGGACGCTACATCTGGA 59.827 55.000 0.00 0.00 0.00 3.86
2617 2673 0.108804 ACAACGGACGCTACATCTGG 60.109 55.000 0.00 0.00 0.00 3.86
2620 2676 1.992170 AAGACAACGGACGCTACATC 58.008 50.000 0.00 0.00 0.00 3.06
2631 2687 1.906757 TGTTGCAAGCAAAGACAACG 58.093 45.000 9.32 0.00 44.13 4.10
2638 2694 4.552378 GCGATGAAAAATGTTGCAAGCAAA 60.552 37.500 9.32 0.97 37.70 3.68
2662 2718 8.991421 AGCGGAATGGCTAGATGATGTAATCG 62.991 46.154 0.00 0.00 44.21 3.34
2667 2723 1.696336 AGCGGAATGGCTAGATGATGT 59.304 47.619 0.00 0.00 42.62 3.06
2668 2724 2.344950 GAGCGGAATGGCTAGATGATG 58.655 52.381 0.00 0.00 44.93 3.07
2670 2726 0.315251 CGAGCGGAATGGCTAGATGA 59.685 55.000 0.00 0.00 44.93 2.92
2682 2738 0.319211 CTTGTGGTGTTACGAGCGGA 60.319 55.000 0.00 0.00 0.00 5.54
2685 2741 1.717645 CGTACTTGTGGTGTTACGAGC 59.282 52.381 0.00 0.00 35.83 5.03
2689 2745 2.473984 GTCAGCGTACTTGTGGTGTTAC 59.526 50.000 0.00 0.00 35.23 2.50
2701 2757 2.464865 GGTGAGATGATGTCAGCGTAC 58.535 52.381 6.02 0.00 37.34 3.67
2702 2758 2.871182 GGTGAGATGATGTCAGCGTA 57.129 50.000 6.02 0.00 37.34 4.42
2703 2759 3.748863 GGTGAGATGATGTCAGCGT 57.251 52.632 6.02 0.00 37.34 5.07
2705 2761 1.406898 TCTCGGTGAGATGATGTCAGC 59.593 52.381 11.26 11.26 38.75 4.26
2706 2762 2.687425 AGTCTCGGTGAGATGATGTCAG 59.313 50.000 0.00 0.00 40.98 3.51
2707 2763 2.728007 AGTCTCGGTGAGATGATGTCA 58.272 47.619 0.00 0.00 40.98 3.58
2708 2764 3.129462 TGAAGTCTCGGTGAGATGATGTC 59.871 47.826 0.00 0.00 40.98 3.06
2709 2765 3.092301 TGAAGTCTCGGTGAGATGATGT 58.908 45.455 0.00 0.00 40.98 3.06
2710 2766 3.790152 TGAAGTCTCGGTGAGATGATG 57.210 47.619 0.00 0.00 40.98 3.07
2711 2767 6.097554 ACTTAATGAAGTCTCGGTGAGATGAT 59.902 38.462 0.00 0.00 42.50 2.45
2712 2768 5.419155 ACTTAATGAAGTCTCGGTGAGATGA 59.581 40.000 0.00 0.00 42.50 2.92
2713 2769 5.655488 ACTTAATGAAGTCTCGGTGAGATG 58.345 41.667 0.00 0.00 42.50 2.90
2714 2770 5.923733 ACTTAATGAAGTCTCGGTGAGAT 57.076 39.130 0.00 0.00 42.50 2.75
2726 2782 4.457834 ACTCGGTCAGGACTTAATGAAG 57.542 45.455 0.00 0.00 38.76 3.02
2727 2783 4.527038 AGAACTCGGTCAGGACTTAATGAA 59.473 41.667 0.00 0.00 0.00 2.57
2728 2784 4.087182 AGAACTCGGTCAGGACTTAATGA 58.913 43.478 0.00 0.00 0.00 2.57
2729 2785 4.457834 AGAACTCGGTCAGGACTTAATG 57.542 45.455 0.00 0.00 0.00 1.90
2730 2786 4.098196 GCTAGAACTCGGTCAGGACTTAAT 59.902 45.833 0.00 0.00 0.00 1.40
2731 2787 3.442977 GCTAGAACTCGGTCAGGACTTAA 59.557 47.826 0.00 0.00 0.00 1.85
2732 2788 3.015327 GCTAGAACTCGGTCAGGACTTA 58.985 50.000 0.00 0.00 0.00 2.24
2733 2789 1.819903 GCTAGAACTCGGTCAGGACTT 59.180 52.381 0.00 0.00 0.00 3.01
2734 2790 1.004979 AGCTAGAACTCGGTCAGGACT 59.995 52.381 0.00 0.00 0.00 3.85
2735 2791 1.465794 AGCTAGAACTCGGTCAGGAC 58.534 55.000 0.00 0.00 0.00 3.85
2736 2792 2.026542 TGTAGCTAGAACTCGGTCAGGA 60.027 50.000 0.00 0.00 0.00 3.86
2737 2793 2.097791 GTGTAGCTAGAACTCGGTCAGG 59.902 54.545 0.00 0.00 0.00 3.86
2738 2794 2.097791 GGTGTAGCTAGAACTCGGTCAG 59.902 54.545 0.00 0.00 0.00 3.51
2739 2795 2.089980 GGTGTAGCTAGAACTCGGTCA 58.910 52.381 0.00 0.00 0.00 4.02
2740 2796 1.404748 GGGTGTAGCTAGAACTCGGTC 59.595 57.143 5.83 0.00 0.00 4.79
2741 2797 1.272313 TGGGTGTAGCTAGAACTCGGT 60.272 52.381 5.83 0.00 0.00 4.69
2742 2798 1.134560 GTGGGTGTAGCTAGAACTCGG 59.865 57.143 5.83 0.00 0.00 4.63
2743 2799 2.093106 AGTGGGTGTAGCTAGAACTCG 58.907 52.381 5.83 0.00 0.00 4.18
2744 2800 4.705991 ACTTAGTGGGTGTAGCTAGAACTC 59.294 45.833 5.83 2.75 0.00 3.01
2745 2801 4.675038 ACTTAGTGGGTGTAGCTAGAACT 58.325 43.478 5.83 2.62 0.00 3.01
2746 2802 6.505272 CATACTTAGTGGGTGTAGCTAGAAC 58.495 44.000 0.00 0.00 0.00 3.01
2747 2803 5.068723 GCATACTTAGTGGGTGTAGCTAGAA 59.931 44.000 0.00 0.00 0.00 2.10
2748 2804 4.583489 GCATACTTAGTGGGTGTAGCTAGA 59.417 45.833 0.00 0.00 0.00 2.43
2749 2805 4.341235 TGCATACTTAGTGGGTGTAGCTAG 59.659 45.833 0.00 0.00 0.00 3.42
2750 2806 4.098960 GTGCATACTTAGTGGGTGTAGCTA 59.901 45.833 0.00 0.00 0.00 3.32
2751 2807 3.104512 TGCATACTTAGTGGGTGTAGCT 58.895 45.455 0.00 0.00 0.00 3.32
2752 2808 3.195661 GTGCATACTTAGTGGGTGTAGC 58.804 50.000 0.00 0.00 0.00 3.58
2753 2809 4.465632 TGTGCATACTTAGTGGGTGTAG 57.534 45.455 0.00 0.00 0.00 2.74
2754 2810 4.893829 TTGTGCATACTTAGTGGGTGTA 57.106 40.909 0.00 0.00 0.00 2.90
2755 2811 3.780804 TTGTGCATACTTAGTGGGTGT 57.219 42.857 0.00 0.00 0.00 4.16
2756 2812 4.517285 AGATTGTGCATACTTAGTGGGTG 58.483 43.478 0.00 0.00 0.00 4.61
2757 2813 4.844349 AGATTGTGCATACTTAGTGGGT 57.156 40.909 0.00 0.00 0.00 4.51
2758 2814 4.271049 CGAAGATTGTGCATACTTAGTGGG 59.729 45.833 0.00 0.00 0.00 4.61
2759 2815 4.870426 ACGAAGATTGTGCATACTTAGTGG 59.130 41.667 0.00 0.00 30.01 4.00
2760 2816 6.199154 CCTACGAAGATTGTGCATACTTAGTG 59.801 42.308 15.07 8.98 32.51 2.74
2761 2817 6.273825 CCTACGAAGATTGTGCATACTTAGT 58.726 40.000 0.00 3.23 34.07 2.24
2762 2818 5.692204 CCCTACGAAGATTGTGCATACTTAG 59.308 44.000 0.00 0.00 0.00 2.18
2763 2819 5.361571 TCCCTACGAAGATTGTGCATACTTA 59.638 40.000 0.00 0.00 0.00 2.24
2764 2820 4.161565 TCCCTACGAAGATTGTGCATACTT 59.838 41.667 0.00 0.00 0.00 2.24
2765 2821 3.704566 TCCCTACGAAGATTGTGCATACT 59.295 43.478 0.00 0.00 0.00 2.12
2766 2822 4.054780 TCCCTACGAAGATTGTGCATAC 57.945 45.455 0.00 0.00 0.00 2.39
2767 2823 4.746535 TTCCCTACGAAGATTGTGCATA 57.253 40.909 0.00 0.00 0.00 3.14
2768 2824 3.627395 TTCCCTACGAAGATTGTGCAT 57.373 42.857 0.00 0.00 0.00 3.96
2769 2825 3.410631 TTTCCCTACGAAGATTGTGCA 57.589 42.857 0.00 0.00 0.00 4.57
2770 2826 6.093633 ACTTTATTTCCCTACGAAGATTGTGC 59.906 38.462 0.00 0.00 0.00 4.57
2771 2827 7.549488 AGACTTTATTTCCCTACGAAGATTGTG 59.451 37.037 0.00 0.00 0.00 3.33
2772 2828 7.621796 AGACTTTATTTCCCTACGAAGATTGT 58.378 34.615 0.00 0.00 0.00 2.71
3045 3101 8.752187 AGTTTCATGTGTAAATTGGCTCATATT 58.248 29.630 0.00 0.00 0.00 1.28
3046 3102 8.297470 AGTTTCATGTGTAAATTGGCTCATAT 57.703 30.769 0.00 0.00 0.00 1.78
3047 3103 7.701539 AGTTTCATGTGTAAATTGGCTCATA 57.298 32.000 0.00 0.00 0.00 2.15
3048 3104 6.594788 AGTTTCATGTGTAAATTGGCTCAT 57.405 33.333 0.00 0.00 0.00 2.90
3049 3105 6.939730 TCTAGTTTCATGTGTAAATTGGCTCA 59.060 34.615 0.00 0.00 0.00 4.26
3050 3106 7.377766 TCTAGTTTCATGTGTAAATTGGCTC 57.622 36.000 0.00 0.00 0.00 4.70
3051 3107 7.759489 TTCTAGTTTCATGTGTAAATTGGCT 57.241 32.000 0.00 0.00 0.00 4.75
3052 3108 8.810652 TTTTCTAGTTTCATGTGTAAATTGGC 57.189 30.769 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.