Multiple sequence alignment - TraesCS1D01G084000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G084000 chr1D 100.000 3195 0 0 1 3195 66996699 66993505 0.000000e+00 5901.0
1 TraesCS1D01G084000 chr1D 100.000 2026 0 0 3355 5380 66993345 66991320 0.000000e+00 3742.0
2 TraesCS1D01G084000 chr1D 100.000 33 0 0 5862 5894 66990838 66990806 1.770000e-05 62.1
3 TraesCS1D01G084000 chr1D 100.000 33 0 0 5862 5894 66991420 66991388 1.770000e-05 62.1
4 TraesCS1D01G084000 chr1A 88.953 2236 121 44 1036 3195 65795581 65793396 0.000000e+00 2645.0
5 TraesCS1D01G084000 chr1A 88.896 1666 121 26 3489 5128 65792881 65791254 0.000000e+00 1993.0
6 TraesCS1D01G084000 chr1A 86.899 832 94 12 1 820 117977116 117976288 0.000000e+00 918.0
7 TraesCS1D01G084000 chr1A 90.456 241 14 7 3429 3662 65793118 65792880 5.740000e-80 309.0
8 TraesCS1D01G084000 chr1A 94.340 53 3 0 3589 3641 94679245 94679193 1.360000e-11 82.4
9 TraesCS1D01G084000 chr1B 88.984 1761 114 23 3391 5117 108215710 108213996 0.000000e+00 2104.0
10 TraesCS1D01G084000 chr1B 89.436 1543 82 32 963 2461 108219142 108217637 0.000000e+00 1871.0
11 TraesCS1D01G084000 chr1B 88.185 821 86 11 1 815 180405521 180404706 0.000000e+00 968.0
12 TraesCS1D01G084000 chr1B 86.144 765 55 18 2455 3194 108216505 108215767 0.000000e+00 778.0
13 TraesCS1D01G084000 chr5D 90.361 830 65 8 1 818 412714190 412713364 0.000000e+00 1075.0
14 TraesCS1D01G084000 chr5D 87.857 280 28 6 5101 5375 287426945 287426667 2.050000e-84 324.0
15 TraesCS1D01G084000 chr5D 86.081 273 36 2 5100 5371 259542607 259542878 5.780000e-75 292.0
16 TraesCS1D01G084000 chr7B 90.156 833 66 9 2 820 105032544 105033374 0.000000e+00 1070.0
17 TraesCS1D01G084000 chr6D 89.835 846 64 12 1 831 58833644 58834482 0.000000e+00 1066.0
18 TraesCS1D01G084000 chr6D 88.053 837 85 5 1 823 159504687 159505522 0.000000e+00 977.0
19 TraesCS1D01G084000 chr6D 85.885 836 104 11 1 828 458724088 458723259 0.000000e+00 878.0
20 TraesCS1D01G084000 chr3D 89.869 839 70 6 1 825 604795631 604796468 0.000000e+00 1064.0
21 TraesCS1D01G084000 chr3D 89.680 843 68 11 1 827 607326566 607327405 0.000000e+00 1057.0
22 TraesCS1D01G084000 chr3D 89.867 829 68 8 1 815 115642979 115643805 0.000000e+00 1051.0
23 TraesCS1D01G084000 chr4D 89.618 838 67 11 1 820 276857273 276858108 0.000000e+00 1048.0
24 TraesCS1D01G084000 chr4D 88.299 829 80 8 1 813 471243114 471242287 0.000000e+00 977.0
25 TraesCS1D01G084000 chr4D 86.567 268 32 3 5105 5370 298773350 298773085 5.780000e-75 292.0
26 TraesCS1D01G084000 chr6A 88.200 839 84 8 1 827 605364495 605365330 0.000000e+00 987.0
27 TraesCS1D01G084000 chr6B 88.462 832 75 13 1 820 417685455 417686277 0.000000e+00 985.0
28 TraesCS1D01G084000 chr4A 90.099 505 36 5 1 494 85588616 85588115 1.380000e-180 643.0
29 TraesCS1D01G084000 chr7D 88.806 268 29 1 5108 5374 274697441 274697708 1.580000e-85 327.0
30 TraesCS1D01G084000 chr2B 87.546 273 31 3 5103 5374 443157647 443157377 4.430000e-81 313.0
31 TraesCS1D01G084000 chr2B 100.000 30 0 0 5865 5894 208311057 208311028 8.250000e-04 56.5
32 TraesCS1D01G084000 chr5B 87.179 273 33 2 5103 5374 294557690 294557419 5.740000e-80 309.0
33 TraesCS1D01G084000 chr7A 86.957 276 33 3 5102 5374 307959895 307960170 2.060000e-79 307.0
34 TraesCS1D01G084000 chr7A 92.857 56 4 0 3585 3640 637288261 637288206 1.360000e-11 82.4
35 TraesCS1D01G084000 chr2D 87.179 273 32 3 5103 5374 373676739 373676469 2.060000e-79 307.0
36 TraesCS1D01G084000 chr3B 86.842 266 32 3 5107 5371 70982216 70982479 1.610000e-75 294.0
37 TraesCS1D01G084000 chrUn 91.379 58 5 0 3583 3640 170992984 170993041 4.900000e-11 80.5
38 TraesCS1D01G084000 chrUn 94.231 52 3 0 3589 3640 229247401 229247350 4.900000e-11 80.5
39 TraesCS1D01G084000 chrUn 94.231 52 3 0 3589 3640 289218368 289218317 4.900000e-11 80.5
40 TraesCS1D01G084000 chrUn 94.231 52 3 0 3589 3640 408220771 408220720 4.900000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G084000 chr1D 66990806 66996699 5893 True 2441.800000 5901 100.000 1 5894 4 chr1D.!!$R1 5893
1 TraesCS1D01G084000 chr1A 65791254 65795581 4327 True 1649.000000 2645 89.435 1036 5128 3 chr1A.!!$R3 4092
2 TraesCS1D01G084000 chr1A 117976288 117977116 828 True 918.000000 918 86.899 1 820 1 chr1A.!!$R2 819
3 TraesCS1D01G084000 chr1B 108213996 108219142 5146 True 1584.333333 2104 88.188 963 5117 3 chr1B.!!$R2 4154
4 TraesCS1D01G084000 chr1B 180404706 180405521 815 True 968.000000 968 88.185 1 815 1 chr1B.!!$R1 814
5 TraesCS1D01G084000 chr5D 412713364 412714190 826 True 1075.000000 1075 90.361 1 818 1 chr5D.!!$R2 817
6 TraesCS1D01G084000 chr7B 105032544 105033374 830 False 1070.000000 1070 90.156 2 820 1 chr7B.!!$F1 818
7 TraesCS1D01G084000 chr6D 58833644 58834482 838 False 1066.000000 1066 89.835 1 831 1 chr6D.!!$F1 830
8 TraesCS1D01G084000 chr6D 159504687 159505522 835 False 977.000000 977 88.053 1 823 1 chr6D.!!$F2 822
9 TraesCS1D01G084000 chr6D 458723259 458724088 829 True 878.000000 878 85.885 1 828 1 chr6D.!!$R1 827
10 TraesCS1D01G084000 chr3D 604795631 604796468 837 False 1064.000000 1064 89.869 1 825 1 chr3D.!!$F2 824
11 TraesCS1D01G084000 chr3D 607326566 607327405 839 False 1057.000000 1057 89.680 1 827 1 chr3D.!!$F3 826
12 TraesCS1D01G084000 chr3D 115642979 115643805 826 False 1051.000000 1051 89.867 1 815 1 chr3D.!!$F1 814
13 TraesCS1D01G084000 chr4D 276857273 276858108 835 False 1048.000000 1048 89.618 1 820 1 chr4D.!!$F1 819
14 TraesCS1D01G084000 chr4D 471242287 471243114 827 True 977.000000 977 88.299 1 813 1 chr4D.!!$R2 812
15 TraesCS1D01G084000 chr6A 605364495 605365330 835 False 987.000000 987 88.200 1 827 1 chr6A.!!$F1 826
16 TraesCS1D01G084000 chr6B 417685455 417686277 822 False 985.000000 985 88.462 1 820 1 chr6B.!!$F1 819
17 TraesCS1D01G084000 chr4A 85588115 85588616 501 True 643.000000 643 90.099 1 494 1 chr4A.!!$R1 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 970 0.035820 TTATCGCGGTTTCTTGGGCT 60.036 50.0 6.13 0.0 0.0 5.19 F
1012 1048 0.179056 CGAATTAGCCCCGTCCACAT 60.179 55.0 0.00 0.0 0.0 3.21 F
2747 3978 0.035739 ATGGCGTTTTACTGGGACGT 59.964 50.0 0.00 0.0 38.9 4.34 F
4431 6053 0.238289 CCATGAACAACGCAGTGGAC 59.762 55.0 0.00 0.0 45.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2740 3971 0.035343 TCCAACAAACACACGTCCCA 60.035 50.000 0.00 0.00 0.00 4.37 R
2835 4066 0.038526 CAGTGTTACGTCGCCCTCTT 60.039 55.000 0.00 0.00 0.00 2.85 R
4561 6186 1.212935 AGAGTTGCAACAAGTCCCTGT 59.787 47.619 30.11 7.13 0.00 4.00 R
5314 6942 1.419012 TGCATCTCAATGGCTCTAGGG 59.581 52.381 0.00 0.00 33.19 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.556564 CCCACACGCTCTATAACACG 58.443 55.000 0.00 0.00 0.00 4.49
253 271 8.410673 TTGGTTAAAAGTTGCCATGTCTATTA 57.589 30.769 0.00 0.00 0.00 0.98
315 334 7.792374 TGATATGTGTCAGCTATTTTCTTCC 57.208 36.000 0.00 0.00 0.00 3.46
467 491 7.595819 TTTCATGGTCAAAGTACTGGAATTT 57.404 32.000 0.00 0.00 0.00 1.82
538 564 4.616802 CACATGGCAACTTTAGTTTAAGCG 59.383 41.667 0.00 0.00 35.83 4.68
752 788 4.094887 GTCATCTGTTCATACGTGGCAAAT 59.905 41.667 0.00 0.00 0.00 2.32
753 789 4.094739 TCATCTGTTCATACGTGGCAAATG 59.905 41.667 0.00 0.00 0.00 2.32
784 820 0.618458 AAGGTGTGTGGGCGATGTAT 59.382 50.000 0.00 0.00 0.00 2.29
800 836 3.479505 TGTATAAAATGCCACACGTGC 57.520 42.857 17.22 1.66 0.00 5.34
804 840 4.947147 AATGCCACACGTGCGGGT 62.947 61.111 23.35 4.60 0.00 5.28
876 912 9.449719 TTTTTAGGGAAGTGCATTTTGTTTAAA 57.550 25.926 0.00 0.00 0.00 1.52
877 913 9.620259 TTTTAGGGAAGTGCATTTTGTTTAAAT 57.380 25.926 0.00 0.00 36.90 1.40
906 942 8.788325 AATTAGAATACGGATTAATACTGGGC 57.212 34.615 0.00 0.00 0.00 5.36
907 943 5.161943 AGAATACGGATTAATACTGGGCC 57.838 43.478 0.00 0.00 0.00 5.80
908 944 3.604875 ATACGGATTAATACTGGGCCG 57.395 47.619 8.91 8.91 43.95 6.13
909 945 1.125633 ACGGATTAATACTGGGCCGT 58.874 50.000 10.04 10.04 46.10 5.68
910 946 2.249844 CGGATTAATACTGGGCCGTT 57.750 50.000 0.00 0.00 34.45 4.44
911 947 2.140717 CGGATTAATACTGGGCCGTTC 58.859 52.381 0.00 0.00 34.45 3.95
912 948 2.224209 CGGATTAATACTGGGCCGTTCT 60.224 50.000 0.00 0.00 34.45 3.01
913 949 3.400255 GGATTAATACTGGGCCGTTCTC 58.600 50.000 0.00 0.00 0.00 2.87
914 950 3.181458 GGATTAATACTGGGCCGTTCTCA 60.181 47.826 0.00 0.00 0.00 3.27
915 951 4.505039 GGATTAATACTGGGCCGTTCTCAT 60.505 45.833 0.00 0.00 0.00 2.90
916 952 4.497291 TTAATACTGGGCCGTTCTCATT 57.503 40.909 0.00 0.00 0.00 2.57
917 953 5.617528 TTAATACTGGGCCGTTCTCATTA 57.382 39.130 0.00 0.00 0.00 1.90
918 954 4.706842 AATACTGGGCCGTTCTCATTAT 57.293 40.909 0.00 0.00 0.00 1.28
919 955 2.622064 ACTGGGCCGTTCTCATTATC 57.378 50.000 0.00 0.00 0.00 1.75
920 956 1.202533 ACTGGGCCGTTCTCATTATCG 60.203 52.381 0.00 0.00 0.00 2.92
921 957 0.531974 TGGGCCGTTCTCATTATCGC 60.532 55.000 0.00 0.00 0.00 4.58
922 958 1.557443 GGGCCGTTCTCATTATCGCG 61.557 60.000 0.00 0.00 0.00 5.87
923 959 1.557443 GGCCGTTCTCATTATCGCGG 61.557 60.000 6.13 0.00 41.79 6.46
924 960 0.874607 GCCGTTCTCATTATCGCGGT 60.875 55.000 6.13 0.00 41.06 5.68
925 961 1.567504 CCGTTCTCATTATCGCGGTT 58.432 50.000 6.13 0.00 35.11 4.44
926 962 1.931172 CCGTTCTCATTATCGCGGTTT 59.069 47.619 6.13 0.00 35.11 3.27
927 963 2.034001 CCGTTCTCATTATCGCGGTTTC 60.034 50.000 6.13 0.00 35.11 2.78
928 964 2.858344 CGTTCTCATTATCGCGGTTTCT 59.142 45.455 6.13 0.00 0.00 2.52
929 965 3.306166 CGTTCTCATTATCGCGGTTTCTT 59.694 43.478 6.13 0.00 0.00 2.52
930 966 4.578601 GTTCTCATTATCGCGGTTTCTTG 58.421 43.478 6.13 0.00 0.00 3.02
931 967 3.194861 TCTCATTATCGCGGTTTCTTGG 58.805 45.455 6.13 0.00 0.00 3.61
932 968 2.285083 TCATTATCGCGGTTTCTTGGG 58.715 47.619 6.13 0.00 0.00 4.12
933 969 1.021968 ATTATCGCGGTTTCTTGGGC 58.978 50.000 6.13 0.00 0.00 5.36
934 970 0.035820 TTATCGCGGTTTCTTGGGCT 60.036 50.000 6.13 0.00 0.00 5.19
935 971 0.742990 TATCGCGGTTTCTTGGGCTG 60.743 55.000 6.13 0.00 0.00 4.85
936 972 3.737172 CGCGGTTTCTTGGGCTGG 61.737 66.667 0.00 0.00 0.00 4.85
937 973 4.056125 GCGGTTTCTTGGGCTGGC 62.056 66.667 0.00 0.00 0.00 4.85
938 974 2.282462 CGGTTTCTTGGGCTGGCT 60.282 61.111 0.00 0.00 0.00 4.75
939 975 1.002624 CGGTTTCTTGGGCTGGCTA 60.003 57.895 0.00 0.00 0.00 3.93
940 976 1.026718 CGGTTTCTTGGGCTGGCTAG 61.027 60.000 0.00 0.00 0.00 3.42
941 977 0.328258 GGTTTCTTGGGCTGGCTAGA 59.672 55.000 0.00 1.95 0.00 2.43
942 978 1.454201 GTTTCTTGGGCTGGCTAGAC 58.546 55.000 0.00 0.00 0.00 2.59
948 984 4.840005 GGCTGGCTAGACCACCGC 62.840 72.222 0.00 1.27 46.36 5.68
950 986 3.449227 CTGGCTAGACCACCGCGA 61.449 66.667 8.23 0.00 46.36 5.87
951 987 2.758327 TGGCTAGACCACCGCGAT 60.758 61.111 8.23 0.00 46.36 4.58
952 988 2.027751 GGCTAGACCACCGCGATC 59.972 66.667 8.23 0.00 38.86 3.69
953 989 2.353607 GCTAGACCACCGCGATCG 60.354 66.667 11.69 11.69 0.00 3.69
976 1012 5.221441 CGGTCCAATATGAGTCCACATTAGA 60.221 44.000 0.00 0.00 0.00 2.10
1011 1047 1.219664 CGAATTAGCCCCGTCCACA 59.780 57.895 0.00 0.00 0.00 4.17
1012 1048 0.179056 CGAATTAGCCCCGTCCACAT 60.179 55.000 0.00 0.00 0.00 3.21
1013 1049 1.308998 GAATTAGCCCCGTCCACATG 58.691 55.000 0.00 0.00 0.00 3.21
1015 1051 2.624674 ATTAGCCCCGTCCACATGGC 62.625 60.000 0.00 0.00 44.35 4.40
1021 1057 4.758251 CGTCCACATGGCGGCTCA 62.758 66.667 11.43 0.00 33.33 4.26
1022 1058 2.359850 GTCCACATGGCGGCTCAA 60.360 61.111 11.43 0.00 34.44 3.02
1023 1059 2.046023 TCCACATGGCGGCTCAAG 60.046 61.111 11.43 0.00 34.44 3.02
1024 1060 3.818787 CCACATGGCGGCTCAAGC 61.819 66.667 11.43 0.00 41.14 4.01
1026 1062 2.749044 ACATGGCGGCTCAAGCAG 60.749 61.111 11.43 0.63 44.36 4.24
1029 1065 3.694058 ATGGCGGCTCAAGCAGAGG 62.694 63.158 11.43 0.00 44.86 3.69
1030 1066 4.087892 GGCGGCTCAAGCAGAGGA 62.088 66.667 0.00 0.00 44.86 3.71
1031 1067 2.817396 GCGGCTCAAGCAGAGGAC 60.817 66.667 6.32 0.00 44.86 3.85
1033 1069 1.447489 CGGCTCAAGCAGAGGACAG 60.447 63.158 4.13 0.00 44.86 3.51
1034 1070 1.744741 GGCTCAAGCAGAGGACAGC 60.745 63.158 4.13 0.00 44.86 4.40
1187 1243 4.044065 TCTCTCTCTCTCTGAGGAACCTTT 59.956 45.833 4.59 0.00 42.86 3.11
1393 1459 0.672401 TCGGTTCTTGATGTTCCGGC 60.672 55.000 0.00 0.00 41.27 6.13
1491 1557 0.905357 CCACCTTCGTCCCTCAGATT 59.095 55.000 0.00 0.00 0.00 2.40
1555 1621 5.295431 TCATCTTTGTGGTTCATTTAGCG 57.705 39.130 0.00 0.00 0.00 4.26
1661 1735 3.980775 GTGGATTATTTGTGTGTGTGTGC 59.019 43.478 0.00 0.00 0.00 4.57
1682 1756 2.650778 GAAAAGGGGCAACTGGCG 59.349 61.111 0.00 0.00 46.16 5.69
1757 1831 4.398319 CCCTCAAGGTTAGCTTCTTTTGA 58.602 43.478 0.00 0.00 0.00 2.69
1762 1836 7.362142 CCTCAAGGTTAGCTTCTTTTGATAACC 60.362 40.741 11.52 11.52 39.83 2.85
1763 1837 7.231467 TCAAGGTTAGCTTCTTTTGATAACCT 58.769 34.615 15.04 15.04 46.09 3.50
1765 1839 7.454260 AGGTTAGCTTCTTTTGATAACCTTG 57.546 36.000 15.04 0.00 43.77 3.61
1766 1840 7.231467 AGGTTAGCTTCTTTTGATAACCTTGA 58.769 34.615 15.04 0.00 43.77 3.02
1767 1841 7.724061 AGGTTAGCTTCTTTTGATAACCTTGAA 59.276 33.333 15.04 0.00 43.77 2.69
1768 1842 8.357402 GGTTAGCTTCTTTTGATAACCTTGAAA 58.643 33.333 12.01 0.00 38.02 2.69
1769 1843 9.914131 GTTAGCTTCTTTTGATAACCTTGAAAT 57.086 29.630 0.00 0.00 0.00 2.17
1779 1853 6.389091 TGATAACCTTGAAATTCACATGTGC 58.611 36.000 21.38 7.20 0.00 4.57
1788 1862 3.648339 ATTCACATGTGCACTGTTTCC 57.352 42.857 21.38 0.00 0.00 3.13
1789 1863 2.049888 TCACATGTGCACTGTTTCCA 57.950 45.000 21.38 0.00 0.00 3.53
1906 1981 8.879299 GTGCACGTTTGTCGATAATTATTTATC 58.121 33.333 0.00 7.14 42.86 1.75
2028 2103 2.108075 TCCTGAGGAATTTGCAAGGACA 59.892 45.455 0.00 0.00 0.00 4.02
2080 2155 4.403734 TGAAGTTGGGGTAACAATCCTTC 58.596 43.478 0.00 0.00 41.88 3.46
2099 2174 5.240183 TCCTTCAATTCTTGAGAGCTTTGTG 59.760 40.000 0.00 0.00 41.38 3.33
2184 2260 6.053005 TGTTAAGGATGTCAGTTTTCTTCGT 58.947 36.000 0.00 0.00 0.00 3.85
2332 2417 8.267894 AGTTTCATACCAGTAGTATTTGCATCT 58.732 33.333 0.00 0.00 39.79 2.90
2374 2467 4.692129 CGCGATTCGTGCTCTACT 57.308 55.556 0.00 0.00 0.00 2.57
2417 2510 1.402968 GATTGTGCATCGCTTCACCAT 59.597 47.619 0.00 0.00 32.51 3.55
2432 2525 0.257328 ACCATGTGTGTGTGGGTGAA 59.743 50.000 0.00 0.00 39.86 3.18
2499 3730 2.059541 CTCGACCGTTTGTCTTCTTCC 58.940 52.381 0.00 0.00 42.13 3.46
2501 3732 1.525619 CGACCGTTTGTCTTCTTCCAC 59.474 52.381 0.00 0.00 42.13 4.02
2502 3733 2.802057 CGACCGTTTGTCTTCTTCCACT 60.802 50.000 0.00 0.00 42.13 4.00
2506 3737 3.877508 CCGTTTGTCTTCTTCCACTTCTT 59.122 43.478 0.00 0.00 0.00 2.52
2536 3767 6.656632 AATTTCTTCCACTTCCTCTTTTCC 57.343 37.500 0.00 0.00 0.00 3.13
2591 3822 6.291377 GTTCATCTCCCATATTTGCTACTCA 58.709 40.000 0.00 0.00 0.00 3.41
2596 3827 7.083062 TCTCCCATATTTGCTACTCATCAAT 57.917 36.000 0.00 0.00 0.00 2.57
2602 3833 3.737559 TTGCTACTCATCAATGGGGTT 57.262 42.857 0.00 0.00 30.76 4.11
2611 3842 1.380380 CAATGGGGTTGAGGAGGCC 60.380 63.158 0.00 0.00 40.37 5.19
2657 3888 2.362503 AGGGAGATCGACGGCACA 60.363 61.111 0.00 0.00 0.00 4.57
2695 3926 2.238701 GGAGATTGGTGGGGGTGGT 61.239 63.158 0.00 0.00 0.00 4.16
2715 3946 3.050275 GGCGAGCTGGAACACACC 61.050 66.667 0.00 0.00 0.00 4.16
2738 3969 1.722464 CACGACGAGAATGGCGTTTTA 59.278 47.619 0.00 0.00 42.77 1.52
2740 3971 1.990563 CGACGAGAATGGCGTTTTACT 59.009 47.619 0.00 0.00 42.77 2.24
2747 3978 0.035739 ATGGCGTTTTACTGGGACGT 59.964 50.000 0.00 0.00 38.90 4.34
2835 4066 2.919602 ACTGCTCAGGAGGGGAAAATAA 59.080 45.455 0.00 0.00 0.00 1.40
2845 4076 2.022195 GGGGAAAATAAAGAGGGCGAC 58.978 52.381 0.00 0.00 0.00 5.19
2847 4078 2.353323 GGAAAATAAAGAGGGCGACGT 58.647 47.619 0.00 0.00 0.00 4.34
2870 4101 0.846693 ACTGGGAAAGTGCAGGAGTT 59.153 50.000 0.00 0.00 37.88 3.01
2909 4140 4.574892 TGGTGAGATACTTTTCATTGCGA 58.425 39.130 0.00 0.00 0.00 5.10
2957 4190 3.430333 TTTTTCAAGAAACGCCAGTCC 57.570 42.857 0.00 0.00 0.00 3.85
2958 4191 2.045561 TTTCAAGAAACGCCAGTCCA 57.954 45.000 0.00 0.00 0.00 4.02
2976 4209 6.015434 CCAGTCCATAGTAATTTATTTGCCCC 60.015 42.308 0.00 0.00 0.00 5.80
3001 4234 5.243426 TGTTTGGAGTTGCTTCTGTTAAC 57.757 39.130 0.00 0.00 0.00 2.01
3002 4235 4.702612 TGTTTGGAGTTGCTTCTGTTAACA 59.297 37.500 8.28 8.28 0.00 2.41
3030 4263 2.440539 TGCTTCGAGTTCTCCTTGAC 57.559 50.000 0.00 0.00 33.07 3.18
3035 4268 4.558898 GCTTCGAGTTCTCCTTGACAACTA 60.559 45.833 0.00 0.00 33.07 2.24
3042 4275 2.002586 CTCCTTGACAACTACATGCCG 58.997 52.381 0.00 0.00 0.00 5.69
3049 4289 3.510753 TGACAACTACATGCCGGTTAGTA 59.489 43.478 1.90 2.49 0.00 1.82
3050 4290 4.021280 TGACAACTACATGCCGGTTAGTAA 60.021 41.667 1.90 0.00 0.00 2.24
3052 4292 4.247258 CAACTACATGCCGGTTAGTAACA 58.753 43.478 14.81 0.00 0.00 2.41
3114 4354 2.477375 GCCAACGAAATCAACAGACGTA 59.523 45.455 0.00 0.00 36.20 3.57
3373 4629 2.868964 AGGATACCTACAAGGAGGCA 57.131 50.000 0.00 0.00 40.65 4.75
3374 4630 2.683768 AGGATACCTACAAGGAGGCAG 58.316 52.381 0.00 0.00 40.65 4.85
3375 4631 1.694696 GGATACCTACAAGGAGGCAGG 59.305 57.143 0.00 0.00 40.65 4.85
3376 4632 1.694696 GATACCTACAAGGAGGCAGGG 59.305 57.143 0.00 0.00 40.65 4.45
3377 4633 0.326238 TACCTACAAGGAGGCAGGGG 60.326 60.000 0.00 0.00 40.65 4.79
3378 4634 2.378634 CCTACAAGGAGGCAGGGGG 61.379 68.421 0.00 0.00 37.67 5.40
3401 4657 3.493767 GGGGGTATTGCCTCTTTCTAG 57.506 52.381 0.00 0.00 38.03 2.43
3416 4672 0.861155 TCTAGAGAGGGATGGGGGAC 59.139 60.000 0.00 0.00 0.00 4.46
3503 4931 1.068083 CCACCTGATCGCGCTATGT 59.932 57.895 5.56 0.00 0.00 2.29
3624 5226 3.969802 GCGCTGTGCCAACTTGCT 61.970 61.111 0.00 0.00 37.76 3.91
3629 5231 1.270550 GCTGTGCCAACTTGCTTACAT 59.729 47.619 0.00 0.00 0.00 2.29
3632 5234 2.293122 TGTGCCAACTTGCTTACATGAC 59.707 45.455 0.00 0.00 0.00 3.06
3690 5292 8.530269 TTCTTCTATTCTACGTTTGGAAGAAC 57.470 34.615 17.09 0.00 40.79 3.01
3737 5339 9.753674 AACCTTCATTATTTCTATTGGTTCTGA 57.246 29.630 0.00 0.00 30.55 3.27
3738 5340 9.178758 ACCTTCATTATTTCTATTGGTTCTGAC 57.821 33.333 0.00 0.00 0.00 3.51
3739 5341 9.401058 CCTTCATTATTTCTATTGGTTCTGACT 57.599 33.333 0.00 0.00 0.00 3.41
3956 5560 6.783708 TGGTGTGGTATTTCAGAAACTTTT 57.216 33.333 0.00 0.00 0.00 2.27
4063 5667 9.839185 ATATACTTCCCCTGCTATTTAGTCTTA 57.161 33.333 0.00 0.00 0.00 2.10
4117 5721 8.641499 TGTTTTTCAAGTAAATACCTGCAAAG 57.359 30.769 0.00 0.00 30.50 2.77
4123 5727 6.322712 TCAAGTAAATACCTGCAAAGTTTGGT 59.677 34.615 17.11 9.25 36.66 3.67
4127 5731 8.697292 AGTAAATACCTGCAAAGTTTGGTTTTA 58.303 29.630 17.11 10.50 34.33 1.52
4200 5804 3.423539 TGAACTTGGCAGATTGCTAGT 57.576 42.857 0.67 2.88 44.28 2.57
4279 5883 4.939509 TTTGCTTCTAATAGGTTCGTGC 57.060 40.909 0.00 0.00 0.00 5.34
4285 5889 3.259064 TCTAATAGGTTCGTGCAAGTGC 58.741 45.455 0.00 0.00 42.50 4.40
4301 5905 5.123820 TGCAAGTGCCTACTGATGTTATTTC 59.876 40.000 0.00 0.00 41.18 2.17
4337 5956 2.159179 ACAGGACTGGCAAACCTTTT 57.841 45.000 9.04 0.00 36.63 2.27
4358 5977 4.046286 TCAAACTATGCCACATCCCTTT 57.954 40.909 0.00 0.00 0.00 3.11
4393 6015 8.620116 ATTTGTTACTTTTAAAATGGCATGCT 57.380 26.923 18.92 0.00 0.00 3.79
4431 6053 0.238289 CCATGAACAACGCAGTGGAC 59.762 55.000 0.00 0.00 45.00 4.02
4477 6099 4.759782 AGGAAGTGTCATTCGGTAAGATG 58.240 43.478 0.00 0.00 0.00 2.90
4546 6168 8.233692 TGGTTTTTATGACATTGTTTATTCGC 57.766 30.769 0.00 0.00 0.00 4.70
4561 6186 1.344065 TTCGCCACTTGGGACTAAGA 58.656 50.000 2.29 0.00 40.01 2.10
4568 6193 2.028020 CACTTGGGACTAAGACAGGGAC 60.028 54.545 2.29 0.00 0.00 4.46
4577 6202 2.435372 AAGACAGGGACTTGTTGCAA 57.565 45.000 0.00 0.00 34.60 4.08
4581 6206 1.212935 ACAGGGACTTGTTGCAACTCT 59.787 47.619 28.61 11.97 34.60 3.24
4585 6210 1.312815 GACTTGTTGCAACTCTGGCT 58.687 50.000 28.61 6.78 0.00 4.75
4599 6224 7.663905 TGCAACTCTGGCTTTCTATTAAAACTA 59.336 33.333 0.00 0.00 0.00 2.24
4600 6225 8.678199 GCAACTCTGGCTTTCTATTAAAACTAT 58.322 33.333 0.00 0.00 0.00 2.12
4605 6230 9.959721 TCTGGCTTTCTATTAAAACTATCTTGT 57.040 29.630 0.00 0.00 0.00 3.16
4606 6231 9.994432 CTGGCTTTCTATTAAAACTATCTTGTG 57.006 33.333 0.00 0.00 0.00 3.33
4607 6232 8.458843 TGGCTTTCTATTAAAACTATCTTGTGC 58.541 33.333 0.00 0.00 0.00 4.57
4608 6233 8.458843 GGCTTTCTATTAAAACTATCTTGTGCA 58.541 33.333 0.00 0.00 0.00 4.57
4617 6242 9.677567 TTAAAACTATCTTGTGCATTTCTGTTC 57.322 29.630 0.00 0.00 0.00 3.18
4627 6252 6.962686 TGTGCATTTCTGTTCTGCATATATC 58.037 36.000 0.00 0.00 46.52 1.63
4635 6260 8.442632 TTCTGTTCTGCATATATCAGGAAAAG 57.557 34.615 10.42 6.95 32.63 2.27
4746 6371 3.759815 TCTAGGTAAGAGAAGCAGGGT 57.240 47.619 0.00 0.00 0.00 4.34
4748 6373 5.405063 TCTAGGTAAGAGAAGCAGGGTAT 57.595 43.478 0.00 0.00 0.00 2.73
4789 6414 6.929049 TCATCAAACTCTGTTTACTGTAGTGG 59.071 38.462 0.00 0.00 0.00 4.00
4807 6432 7.914465 TGTAGTGGATTTCATTTTGTTTTTGC 58.086 30.769 0.00 0.00 0.00 3.68
4809 6434 6.121590 AGTGGATTTCATTTTGTTTTTGCCT 58.878 32.000 0.00 0.00 0.00 4.75
4815 6440 7.784633 TTTCATTTTGTTTTTGCCTAGAAGG 57.215 32.000 0.00 0.00 38.80 3.46
4826 6451 8.547894 GTTTTTGCCTAGAAGGTTTTATTTGTG 58.452 33.333 0.00 0.00 37.80 3.33
4828 6453 6.569179 TGCCTAGAAGGTTTTATTTGTGTC 57.431 37.500 0.00 0.00 37.80 3.67
4845 6470 7.589958 TTTGTGTCATACCTTAAATTGGTGT 57.410 32.000 0.00 0.00 38.42 4.16
4861 6486 7.581213 AATTGGTGTTCTGACAGAAAATGTA 57.419 32.000 19.32 6.30 44.17 2.29
4900 6528 9.282247 CATAAAGTGCTTAGCAAAATAAGACAG 57.718 33.333 9.05 0.00 41.47 3.51
4901 6529 5.302357 AGTGCTTAGCAAAATAAGACAGC 57.698 39.130 9.05 0.00 41.47 4.40
4909 6537 5.299949 AGCAAAATAAGACAGCCCTTTTTG 58.700 37.500 0.00 0.00 31.78 2.44
4984 6612 3.758554 CACCAATGCTTAGTAGGTGCTTT 59.241 43.478 0.00 0.00 42.68 3.51
4985 6613 4.218417 CACCAATGCTTAGTAGGTGCTTTT 59.782 41.667 0.00 0.00 42.68 2.27
5054 6682 1.573108 GTTCCCTGAGAGGTCATGGA 58.427 55.000 0.00 0.00 43.59 3.41
5058 6686 2.573462 TCCCTGAGAGGTCATGGAAAAG 59.427 50.000 0.00 0.00 42.66 2.27
5064 6692 3.403038 AGAGGTCATGGAAAAGTGAACG 58.597 45.455 0.00 0.00 37.15 3.95
5118 6746 0.033920 CAAACTTGGGCCTCCTTTGC 59.966 55.000 4.53 0.00 0.00 3.68
5121 6749 0.105504 ACTTGGGCCTCCTTTGCTTT 60.106 50.000 4.53 0.00 0.00 3.51
5123 6751 1.546029 CTTGGGCCTCCTTTGCTTTAC 59.454 52.381 4.53 0.00 0.00 2.01
5128 6756 2.514803 GCCTCCTTTGCTTTACAGGAA 58.485 47.619 0.00 0.00 36.23 3.36
5129 6757 3.092301 GCCTCCTTTGCTTTACAGGAAT 58.908 45.455 0.00 0.00 36.23 3.01
5130 6758 3.511540 GCCTCCTTTGCTTTACAGGAATT 59.488 43.478 0.00 0.00 36.23 2.17
5131 6759 4.021104 GCCTCCTTTGCTTTACAGGAATTT 60.021 41.667 0.00 0.00 36.23 1.82
5132 6760 5.511373 GCCTCCTTTGCTTTACAGGAATTTT 60.511 40.000 0.00 0.00 36.23 1.82
5133 6761 5.928264 CCTCCTTTGCTTTACAGGAATTTTG 59.072 40.000 0.00 0.00 36.23 2.44
5134 6762 6.462909 CCTCCTTTGCTTTACAGGAATTTTGT 60.463 38.462 2.66 2.66 36.23 2.83
5135 6763 7.255801 CCTCCTTTGCTTTACAGGAATTTTGTA 60.256 37.037 1.00 1.00 36.23 2.41
5136 6764 7.657336 TCCTTTGCTTTACAGGAATTTTGTAG 58.343 34.615 4.58 0.00 33.53 2.74
5137 6765 6.868339 CCTTTGCTTTACAGGAATTTTGTAGG 59.132 38.462 4.58 0.00 33.00 3.18
5138 6766 7.255801 CCTTTGCTTTACAGGAATTTTGTAGGA 60.256 37.037 4.58 0.00 33.00 2.94
5139 6767 7.589958 TTGCTTTACAGGAATTTTGTAGGAA 57.410 32.000 4.58 2.17 33.00 3.36
5140 6768 7.775053 TGCTTTACAGGAATTTTGTAGGAAT 57.225 32.000 4.58 0.00 33.00 3.01
5141 6769 8.189119 TGCTTTACAGGAATTTTGTAGGAATT 57.811 30.769 4.58 0.00 33.00 2.17
5142 6770 8.303876 TGCTTTACAGGAATTTTGTAGGAATTC 58.696 33.333 0.00 0.00 40.88 2.17
5143 6771 8.523658 GCTTTACAGGAATTTTGTAGGAATTCT 58.476 33.333 5.23 0.00 41.19 2.40
5144 6772 9.846248 CTTTACAGGAATTTTGTAGGAATTCTG 57.154 33.333 5.23 7.85 41.19 3.02
5145 6773 9.581289 TTTACAGGAATTTTGTAGGAATTCTGA 57.419 29.630 5.23 0.00 41.19 3.27
5146 6774 9.581289 TTACAGGAATTTTGTAGGAATTCTGAA 57.419 29.630 5.23 0.00 41.19 3.02
5147 6775 8.115490 ACAGGAATTTTGTAGGAATTCTGAAG 57.885 34.615 5.23 1.82 41.19 3.02
5148 6776 7.177392 ACAGGAATTTTGTAGGAATTCTGAAGG 59.823 37.037 5.23 0.26 41.19 3.46
5149 6777 7.394359 CAGGAATTTTGTAGGAATTCTGAAGGA 59.606 37.037 5.23 0.00 41.19 3.36
5150 6778 8.118600 AGGAATTTTGTAGGAATTCTGAAGGAT 58.881 33.333 5.23 0.00 41.19 3.24
5151 6779 9.408648 GGAATTTTGTAGGAATTCTGAAGGATA 57.591 33.333 5.23 0.00 41.19 2.59
5161 6789 9.539194 AGGAATTCTGAAGGATAGAAATTTTGT 57.461 29.630 5.23 0.00 37.67 2.83
5183 6811 7.754851 TGTAGTTAAAATTCCTTTGGAGACC 57.245 36.000 0.00 0.00 31.21 3.85
5184 6812 7.523415 TGTAGTTAAAATTCCTTTGGAGACCT 58.477 34.615 0.00 0.00 31.21 3.85
5185 6813 8.002459 TGTAGTTAAAATTCCTTTGGAGACCTT 58.998 33.333 0.00 0.00 31.21 3.50
5186 6814 7.914427 AGTTAAAATTCCTTTGGAGACCTTT 57.086 32.000 0.00 0.00 31.21 3.11
5187 6815 7.726216 AGTTAAAATTCCTTTGGAGACCTTTG 58.274 34.615 0.00 0.00 31.21 2.77
5188 6816 5.551305 AAAATTCCTTTGGAGACCTTTGG 57.449 39.130 0.00 0.00 31.21 3.28
5189 6817 3.903530 ATTCCTTTGGAGACCTTTGGT 57.096 42.857 0.00 0.00 39.44 3.67
5190 6818 3.680777 TTCCTTTGGAGACCTTTGGTT 57.319 42.857 0.00 0.00 35.25 3.67
5191 6819 3.680777 TCCTTTGGAGACCTTTGGTTT 57.319 42.857 0.00 0.00 35.25 3.27
5192 6820 3.295973 TCCTTTGGAGACCTTTGGTTTG 58.704 45.455 0.00 0.00 35.25 2.93
5193 6821 3.031013 CCTTTGGAGACCTTTGGTTTGT 58.969 45.455 0.00 0.00 35.25 2.83
5194 6822 4.079672 TCCTTTGGAGACCTTTGGTTTGTA 60.080 41.667 0.00 0.00 35.25 2.41
5195 6823 4.278419 CCTTTGGAGACCTTTGGTTTGTAG 59.722 45.833 0.00 0.00 35.25 2.74
5196 6824 3.502123 TGGAGACCTTTGGTTTGTAGG 57.498 47.619 0.00 0.00 35.25 3.18
5197 6825 3.050089 TGGAGACCTTTGGTTTGTAGGA 58.950 45.455 0.00 0.00 35.25 2.94
5198 6826 3.460340 TGGAGACCTTTGGTTTGTAGGAA 59.540 43.478 0.00 0.00 35.25 3.36
5199 6827 4.105697 TGGAGACCTTTGGTTTGTAGGAAT 59.894 41.667 0.00 0.00 35.25 3.01
5200 6828 4.700692 GGAGACCTTTGGTTTGTAGGAATC 59.299 45.833 0.00 0.00 35.25 2.52
5201 6829 4.324267 AGACCTTTGGTTTGTAGGAATCG 58.676 43.478 0.00 0.00 35.25 3.34
5202 6830 4.041198 AGACCTTTGGTTTGTAGGAATCGA 59.959 41.667 0.00 0.00 35.25 3.59
5203 6831 4.918588 ACCTTTGGTTTGTAGGAATCGAT 58.081 39.130 0.00 0.00 27.29 3.59
5204 6832 5.321927 ACCTTTGGTTTGTAGGAATCGATT 58.678 37.500 11.20 11.20 27.29 3.34
5205 6833 5.414765 ACCTTTGGTTTGTAGGAATCGATTC 59.585 40.000 26.64 26.64 31.58 2.52
5206 6834 7.523394 ACCTTTGGTTTGTAGGAATCGATTCC 61.523 42.308 38.92 38.92 44.60 3.01
5220 6848 7.602517 GAATCGATTCCTATTTCCATGTAGG 57.397 40.000 24.74 1.47 39.06 3.18
5235 6863 7.878621 TCCATGTAGGATAGAAATCAATCCT 57.121 36.000 8.78 8.78 43.07 3.24
5236 6864 8.280258 TCCATGTAGGATAGAAATCAATCCTT 57.720 34.615 9.03 0.00 43.07 3.36
5237 6865 8.378565 TCCATGTAGGATAGAAATCAATCCTTC 58.621 37.037 9.03 5.31 43.07 3.46
5238 6866 8.159447 CCATGTAGGATAGAAATCAATCCTTCA 58.841 37.037 9.03 10.41 42.91 3.02
5239 6867 8.997323 CATGTAGGATAGAAATCAATCCTTCAC 58.003 37.037 9.03 3.79 41.26 3.18
5240 6868 8.089625 TGTAGGATAGAAATCAATCCTTCACA 57.910 34.615 9.03 6.12 42.91 3.58
5241 6869 8.717717 TGTAGGATAGAAATCAATCCTTCACAT 58.282 33.333 9.03 0.00 42.91 3.21
5242 6870 9.566432 GTAGGATAGAAATCAATCCTTCACATT 57.434 33.333 9.03 0.00 42.91 2.71
5244 6872 9.129532 AGGATAGAAATCAATCCTTCACATTTC 57.870 33.333 0.00 0.00 40.39 2.17
5245 6873 8.906867 GGATAGAAATCAATCCTTCACATTTCA 58.093 33.333 0.00 0.00 36.38 2.69
5248 6876 8.997621 AGAAATCAATCCTTCACATTTCAATG 57.002 30.769 0.00 0.00 42.10 2.82
5249 6877 8.038944 AGAAATCAATCCTTCACATTTCAATGG 58.961 33.333 4.58 0.00 40.70 3.16
5250 6878 7.484993 AATCAATCCTTCACATTTCAATGGA 57.515 32.000 4.58 0.00 40.70 3.41
5251 6879 6.914654 TCAATCCTTCACATTTCAATGGAA 57.085 33.333 4.58 4.49 40.70 3.53
5252 6880 7.300556 TCAATCCTTCACATTTCAATGGAAA 57.699 32.000 0.00 0.00 46.36 3.13
5253 6881 7.733969 TCAATCCTTCACATTTCAATGGAAAA 58.266 30.769 0.00 0.00 45.52 2.29
5254 6882 7.656948 TCAATCCTTCACATTTCAATGGAAAAC 59.343 33.333 0.00 0.00 45.52 2.43
5255 6883 6.729690 TCCTTCACATTTCAATGGAAAACT 57.270 33.333 0.00 0.00 45.52 2.66
5256 6884 7.831691 TCCTTCACATTTCAATGGAAAACTA 57.168 32.000 0.00 0.00 45.52 2.24
5257 6885 8.243961 TCCTTCACATTTCAATGGAAAACTAA 57.756 30.769 0.00 0.00 45.52 2.24
5258 6886 8.141268 TCCTTCACATTTCAATGGAAAACTAAC 58.859 33.333 0.00 0.00 45.52 2.34
5259 6887 7.925483 CCTTCACATTTCAATGGAAAACTAACA 59.075 33.333 0.00 0.00 45.52 2.41
5260 6888 9.480053 CTTCACATTTCAATGGAAAACTAACAT 57.520 29.630 0.00 0.00 45.52 2.71
5261 6889 9.829507 TTCACATTTCAATGGAAAACTAACATT 57.170 25.926 0.00 0.00 45.52 2.71
5272 6900 9.668497 ATGGAAAACTAACATTAACCTAGACTC 57.332 33.333 0.00 0.00 0.00 3.36
5273 6901 8.653191 TGGAAAACTAACATTAACCTAGACTCA 58.347 33.333 0.00 0.00 0.00 3.41
5274 6902 9.498176 GGAAAACTAACATTAACCTAGACTCAA 57.502 33.333 0.00 0.00 0.00 3.02
5310 6938 9.881649 TCTATCCTATGCATCAAATAACATCTC 57.118 33.333 0.19 0.00 0.00 2.75
5311 6939 9.887629 CTATCCTATGCATCAAATAACATCTCT 57.112 33.333 0.19 0.00 0.00 3.10
5313 6941 8.985315 TCCTATGCATCAAATAACATCTCTTT 57.015 30.769 0.19 0.00 0.00 2.52
5314 6942 9.060347 TCCTATGCATCAAATAACATCTCTTTC 57.940 33.333 0.19 0.00 0.00 2.62
5315 6943 8.295288 CCTATGCATCAAATAACATCTCTTTCC 58.705 37.037 0.19 0.00 0.00 3.13
5316 6944 6.455360 TGCATCAAATAACATCTCTTTCCC 57.545 37.500 0.00 0.00 0.00 3.97
5317 6945 6.189859 TGCATCAAATAACATCTCTTTCCCT 58.810 36.000 0.00 0.00 0.00 4.20
5318 6946 7.345691 TGCATCAAATAACATCTCTTTCCCTA 58.654 34.615 0.00 0.00 0.00 3.53
5319 6947 7.500227 TGCATCAAATAACATCTCTTTCCCTAG 59.500 37.037 0.00 0.00 0.00 3.02
5320 6948 7.716998 GCATCAAATAACATCTCTTTCCCTAGA 59.283 37.037 0.00 0.00 0.00 2.43
5321 6949 9.270640 CATCAAATAACATCTCTTTCCCTAGAG 57.729 37.037 0.00 0.00 42.46 2.43
5322 6950 7.275920 TCAAATAACATCTCTTTCCCTAGAGC 58.724 38.462 0.00 0.00 41.18 4.09
5323 6951 5.816955 ATAACATCTCTTTCCCTAGAGCC 57.183 43.478 0.00 0.00 41.18 4.70
5324 6952 3.121929 ACATCTCTTTCCCTAGAGCCA 57.878 47.619 0.00 0.00 41.18 4.75
5325 6953 3.663198 ACATCTCTTTCCCTAGAGCCAT 58.337 45.455 0.00 0.00 41.18 4.40
5326 6954 4.043596 ACATCTCTTTCCCTAGAGCCATT 58.956 43.478 0.00 0.00 41.18 3.16
5327 6955 4.141528 ACATCTCTTTCCCTAGAGCCATTG 60.142 45.833 0.00 0.00 41.18 2.82
5328 6956 3.724478 TCTCTTTCCCTAGAGCCATTGA 58.276 45.455 0.00 0.00 41.18 2.57
5329 6957 3.708631 TCTCTTTCCCTAGAGCCATTGAG 59.291 47.826 0.00 0.00 41.18 3.02
5330 6958 3.708631 CTCTTTCCCTAGAGCCATTGAGA 59.291 47.826 0.00 0.00 35.64 3.27
5331 6959 4.302067 TCTTTCCCTAGAGCCATTGAGAT 58.698 43.478 0.00 0.00 0.00 2.75
5332 6960 4.102210 TCTTTCCCTAGAGCCATTGAGATG 59.898 45.833 0.00 0.00 0.00 2.90
5333 6961 1.696336 TCCCTAGAGCCATTGAGATGC 59.304 52.381 0.00 0.00 31.67 3.91
5334 6962 1.419012 CCCTAGAGCCATTGAGATGCA 59.581 52.381 0.00 0.00 31.67 3.96
5335 6963 2.040012 CCCTAGAGCCATTGAGATGCAT 59.960 50.000 0.00 0.00 31.67 3.96
5336 6964 3.075148 CCTAGAGCCATTGAGATGCATG 58.925 50.000 2.46 0.00 31.67 4.06
5337 6965 2.730934 AGAGCCATTGAGATGCATGT 57.269 45.000 2.46 0.00 31.67 3.21
5338 6966 2.573369 AGAGCCATTGAGATGCATGTC 58.427 47.619 16.63 16.63 31.67 3.06
5339 6967 2.092592 AGAGCCATTGAGATGCATGTCA 60.093 45.455 21.70 21.70 31.67 3.58
5340 6968 2.885266 GAGCCATTGAGATGCATGTCAT 59.115 45.455 25.41 11.62 38.32 3.06
5350 6978 3.806380 GATGCATGTCATCTCACTTCCT 58.194 45.455 2.46 0.00 46.29 3.36
5351 6979 4.953667 GATGCATGTCATCTCACTTCCTA 58.046 43.478 2.46 0.00 46.29 2.94
5352 6980 5.549347 GATGCATGTCATCTCACTTCCTAT 58.451 41.667 2.46 0.00 46.29 2.57
5353 6981 4.700700 TGCATGTCATCTCACTTCCTATG 58.299 43.478 0.00 0.00 0.00 2.23
5354 6982 4.406649 TGCATGTCATCTCACTTCCTATGA 59.593 41.667 0.00 0.00 0.00 2.15
5355 6983 5.071384 TGCATGTCATCTCACTTCCTATGAT 59.929 40.000 0.00 0.00 31.49 2.45
5356 6984 5.996513 GCATGTCATCTCACTTCCTATGATT 59.003 40.000 0.00 0.00 31.49 2.57
5357 6985 6.485984 GCATGTCATCTCACTTCCTATGATTT 59.514 38.462 0.00 0.00 31.49 2.17
5358 6986 7.013083 GCATGTCATCTCACTTCCTATGATTTT 59.987 37.037 0.00 0.00 31.49 1.82
5359 6987 8.557864 CATGTCATCTCACTTCCTATGATTTTC 58.442 37.037 0.00 0.00 31.49 2.29
5360 6988 7.050377 TGTCATCTCACTTCCTATGATTTTCC 58.950 38.462 0.00 0.00 31.49 3.13
5361 6989 7.092712 TGTCATCTCACTTCCTATGATTTTCCT 60.093 37.037 0.00 0.00 31.49 3.36
5362 6990 8.424918 GTCATCTCACTTCCTATGATTTTCCTA 58.575 37.037 0.00 0.00 31.49 2.94
5363 6991 9.163894 TCATCTCACTTCCTATGATTTTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
5364 6992 9.790344 CATCTCACTTCCTATGATTTTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
5366 6994 8.432805 TCTCACTTCCTATGATTTTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
5367 6995 8.337118 TCACTTCCTATGATTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
5368 6996 9.447279 TCACTTCCTATGATTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
5378 7006 8.531982 TGATTTTCCTATTCCTATGATACGAGG 58.468 37.037 0.00 0.00 0.00 4.63
5379 7007 8.666129 ATTTTCCTATTCCTATGATACGAGGA 57.334 34.615 0.00 0.00 40.20 3.71
5892 7520 9.881649 TCTATCCTATGCATCAAATAACATCTC 57.118 33.333 0.19 0.00 0.00 2.75
5893 7521 9.887629 CTATCCTATGCATCAAATAACATCTCT 57.112 33.333 0.19 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.666190 TGACTTGGCGCAGTCTGC 60.666 61.111 23.51 15.22 43.32 4.26
225 238 5.815222 AGACATGGCAACTTTTAACCAAAAC 59.185 36.000 0.00 0.00 35.41 2.43
265 284 6.765512 TGACAACTTCAGTGTAAACATCATGA 59.234 34.615 0.00 0.00 0.00 3.07
467 491 9.076781 TGACATTTTTAGTTCTTTGATGATGGA 57.923 29.630 0.00 0.00 0.00 3.41
488 514 7.756722 GCAATTTTAGTTTGTAGAGCATGACAT 59.243 33.333 0.00 0.00 0.00 3.06
538 564 4.693566 TGTTTACACTGTAGTTGCCATAGC 59.306 41.667 0.00 0.00 40.48 2.97
609 642 6.347859 ACGAGATCTTCAAAACTAGACCTT 57.652 37.500 0.00 0.00 0.00 3.50
752 788 2.639347 ACACACCTTCATCATCACTCCA 59.361 45.455 0.00 0.00 0.00 3.86
753 789 3.005554 CACACACCTTCATCATCACTCC 58.994 50.000 0.00 0.00 0.00 3.85
784 820 1.576920 CCGCACGTGTGGCATTTTA 59.423 52.632 33.26 0.00 39.04 1.52
850 886 9.449719 TTTAAACAAAATGCACTTCCCTAAAAA 57.550 25.926 0.00 0.00 0.00 1.94
851 887 9.620259 ATTTAAACAAAATGCACTTCCCTAAAA 57.380 25.926 0.00 0.00 36.41 1.52
852 888 9.050601 CATTTAAACAAAATGCACTTCCCTAAA 57.949 29.630 0.00 0.00 45.87 1.85
853 889 8.600449 CATTTAAACAAAATGCACTTCCCTAA 57.400 30.769 0.00 0.00 45.87 2.69
880 916 9.227777 GCCCAGTATTAATCCGTATTCTAATTT 57.772 33.333 0.00 0.00 0.00 1.82
881 917 7.827729 GGCCCAGTATTAATCCGTATTCTAATT 59.172 37.037 0.00 0.00 0.00 1.40
882 918 7.336396 GGCCCAGTATTAATCCGTATTCTAAT 58.664 38.462 0.00 0.00 0.00 1.73
883 919 6.572898 CGGCCCAGTATTAATCCGTATTCTAA 60.573 42.308 0.00 0.00 32.93 2.10
884 920 5.105635 CGGCCCAGTATTAATCCGTATTCTA 60.106 44.000 0.00 0.00 32.93 2.10
885 921 4.322499 CGGCCCAGTATTAATCCGTATTCT 60.322 45.833 0.00 0.00 32.93 2.40
886 922 3.930848 CGGCCCAGTATTAATCCGTATTC 59.069 47.826 0.00 0.00 32.93 1.75
887 923 3.325716 ACGGCCCAGTATTAATCCGTATT 59.674 43.478 13.27 0.00 46.79 1.89
888 924 2.901839 ACGGCCCAGTATTAATCCGTAT 59.098 45.455 13.27 0.00 46.79 3.06
889 925 2.318908 ACGGCCCAGTATTAATCCGTA 58.681 47.619 13.27 0.00 46.79 4.02
890 926 1.125633 ACGGCCCAGTATTAATCCGT 58.874 50.000 10.04 10.04 44.32 4.69
891 927 2.140717 GAACGGCCCAGTATTAATCCG 58.859 52.381 8.91 8.91 42.24 4.18
892 928 3.181458 TGAGAACGGCCCAGTATTAATCC 60.181 47.826 0.00 0.00 0.00 3.01
893 929 4.067972 TGAGAACGGCCCAGTATTAATC 57.932 45.455 0.00 0.00 0.00 1.75
894 930 4.706842 ATGAGAACGGCCCAGTATTAAT 57.293 40.909 0.00 0.00 0.00 1.40
895 931 4.497291 AATGAGAACGGCCCAGTATTAA 57.503 40.909 0.00 0.00 0.00 1.40
896 932 5.566032 CGATAATGAGAACGGCCCAGTATTA 60.566 44.000 0.00 0.00 0.00 0.98
897 933 4.642429 GATAATGAGAACGGCCCAGTATT 58.358 43.478 0.00 0.00 0.00 1.89
898 934 3.306088 CGATAATGAGAACGGCCCAGTAT 60.306 47.826 0.00 0.00 0.00 2.12
899 935 2.035449 CGATAATGAGAACGGCCCAGTA 59.965 50.000 0.00 0.00 0.00 2.74
900 936 1.202533 CGATAATGAGAACGGCCCAGT 60.203 52.381 0.00 0.00 0.00 4.00
901 937 1.502231 CGATAATGAGAACGGCCCAG 58.498 55.000 0.00 0.00 0.00 4.45
902 938 0.531974 GCGATAATGAGAACGGCCCA 60.532 55.000 0.00 0.00 0.00 5.36
903 939 1.557443 CGCGATAATGAGAACGGCCC 61.557 60.000 0.00 0.00 0.00 5.80
904 940 1.557443 CCGCGATAATGAGAACGGCC 61.557 60.000 8.23 0.00 33.46 6.13
905 941 0.874607 ACCGCGATAATGAGAACGGC 60.875 55.000 8.23 0.00 44.31 5.68
906 942 1.567504 AACCGCGATAATGAGAACGG 58.432 50.000 8.23 0.00 45.86 4.44
907 943 2.858344 AGAAACCGCGATAATGAGAACG 59.142 45.455 8.23 0.00 0.00 3.95
908 944 4.494199 CCAAGAAACCGCGATAATGAGAAC 60.494 45.833 8.23 0.00 0.00 3.01
909 945 3.621268 CCAAGAAACCGCGATAATGAGAA 59.379 43.478 8.23 0.00 0.00 2.87
910 946 3.194861 CCAAGAAACCGCGATAATGAGA 58.805 45.455 8.23 0.00 0.00 3.27
911 947 2.287915 CCCAAGAAACCGCGATAATGAG 59.712 50.000 8.23 0.00 0.00 2.90
912 948 2.285083 CCCAAGAAACCGCGATAATGA 58.715 47.619 8.23 0.00 0.00 2.57
913 949 1.268539 GCCCAAGAAACCGCGATAATG 60.269 52.381 8.23 0.00 0.00 1.90
914 950 1.021968 GCCCAAGAAACCGCGATAAT 58.978 50.000 8.23 0.00 0.00 1.28
915 951 0.035820 AGCCCAAGAAACCGCGATAA 60.036 50.000 8.23 0.00 0.00 1.75
916 952 0.742990 CAGCCCAAGAAACCGCGATA 60.743 55.000 8.23 0.00 0.00 2.92
917 953 2.040544 CAGCCCAAGAAACCGCGAT 61.041 57.895 8.23 0.00 0.00 4.58
918 954 2.668212 CAGCCCAAGAAACCGCGA 60.668 61.111 8.23 0.00 0.00 5.87
919 955 3.737172 CCAGCCCAAGAAACCGCG 61.737 66.667 0.00 0.00 0.00 6.46
920 956 4.056125 GCCAGCCCAAGAAACCGC 62.056 66.667 0.00 0.00 0.00 5.68
921 957 1.002624 TAGCCAGCCCAAGAAACCG 60.003 57.895 0.00 0.00 0.00 4.44
922 958 0.328258 TCTAGCCAGCCCAAGAAACC 59.672 55.000 0.00 0.00 0.00 3.27
923 959 1.454201 GTCTAGCCAGCCCAAGAAAC 58.546 55.000 0.00 0.00 0.00 2.78
924 960 0.328258 GGTCTAGCCAGCCCAAGAAA 59.672 55.000 0.00 0.00 37.17 2.52
925 961 0.840288 TGGTCTAGCCAGCCCAAGAA 60.840 55.000 2.19 0.00 43.61 2.52
926 962 1.229496 TGGTCTAGCCAGCCCAAGA 60.229 57.895 2.19 0.00 43.61 3.02
927 963 3.403624 TGGTCTAGCCAGCCCAAG 58.596 61.111 2.19 0.00 43.61 3.61
934 970 2.758327 ATCGCGGTGGTCTAGCCA 60.758 61.111 6.13 2.19 46.95 4.75
935 971 2.027751 GATCGCGGTGGTCTAGCC 59.972 66.667 6.13 0.00 37.90 3.93
936 972 2.353607 CGATCGCGGTGGTCTAGC 60.354 66.667 6.13 0.00 0.00 3.42
946 982 1.335964 ACTCATATTGGACCGATCGCG 60.336 52.381 10.32 0.00 37.24 5.87
947 983 2.329379 GACTCATATTGGACCGATCGC 58.671 52.381 10.32 0.00 0.00 4.58
948 984 2.296190 TGGACTCATATTGGACCGATCG 59.704 50.000 8.51 8.51 0.00 3.69
949 985 3.069586 TGTGGACTCATATTGGACCGATC 59.930 47.826 0.00 0.00 0.00 3.69
950 986 3.038280 TGTGGACTCATATTGGACCGAT 58.962 45.455 0.00 0.00 0.00 4.18
951 987 2.462723 TGTGGACTCATATTGGACCGA 58.537 47.619 0.00 0.00 0.00 4.69
952 988 2.979814 TGTGGACTCATATTGGACCG 57.020 50.000 0.00 0.00 0.00 4.79
953 989 6.174720 TCTAATGTGGACTCATATTGGACC 57.825 41.667 0.00 0.00 37.18 4.46
954 990 7.601886 CAGATCTAATGTGGACTCATATTGGAC 59.398 40.741 0.00 1.47 41.77 4.02
955 991 7.256439 CCAGATCTAATGTGGACTCATATTGGA 60.256 40.741 0.00 4.92 46.04 3.53
956 992 6.877855 CCAGATCTAATGTGGACTCATATTGG 59.122 42.308 0.00 0.00 46.04 3.16
957 993 6.877855 CCCAGATCTAATGTGGACTCATATTG 59.122 42.308 4.77 0.00 46.04 1.90
958 994 6.521427 GCCCAGATCTAATGTGGACTCATATT 60.521 42.308 4.77 0.00 46.04 1.28
959 995 5.046014 GCCCAGATCTAATGTGGACTCATAT 60.046 44.000 4.77 0.00 46.04 1.78
960 996 4.284490 GCCCAGATCTAATGTGGACTCATA 59.716 45.833 4.77 0.00 46.04 2.15
961 997 3.072184 GCCCAGATCTAATGTGGACTCAT 59.928 47.826 4.77 0.00 46.04 2.90
976 1012 1.500474 TCGGATTTCAGAGCCCAGAT 58.500 50.000 0.00 0.00 0.00 2.90
1011 1047 2.124819 CTCTGCTTGAGCCGCCAT 60.125 61.111 0.00 0.00 41.18 4.40
1012 1048 4.399395 CCTCTGCTTGAGCCGCCA 62.399 66.667 0.00 0.00 41.35 5.69
1013 1049 4.087892 TCCTCTGCTTGAGCCGCC 62.088 66.667 0.00 0.00 41.35 6.13
1015 1051 1.447489 CTGTCCTCTGCTTGAGCCG 60.447 63.158 0.00 0.00 41.35 5.52
1016 1052 1.744741 GCTGTCCTCTGCTTGAGCC 60.745 63.158 0.00 0.00 41.35 4.70
1019 1055 0.251354 GATGGCTGTCCTCTGCTTGA 59.749 55.000 0.00 0.00 38.34 3.02
1020 1056 1.088340 CGATGGCTGTCCTCTGCTTG 61.088 60.000 0.00 0.00 38.34 4.01
1021 1057 1.220206 CGATGGCTGTCCTCTGCTT 59.780 57.895 0.00 0.00 38.34 3.91
1022 1058 2.729479 CCGATGGCTGTCCTCTGCT 61.729 63.158 0.00 0.00 38.34 4.24
1023 1059 2.202987 CCGATGGCTGTCCTCTGC 60.203 66.667 0.00 0.00 37.71 4.26
1024 1060 2.202987 GCCGATGGCTGTCCTCTG 60.203 66.667 0.00 0.00 46.69 3.35
1131 1167 0.719465 GGTACATGCGGAACTTCACG 59.281 55.000 0.00 0.00 0.00 4.35
1187 1243 1.288508 CCCATCCCCCAACAGATCCA 61.289 60.000 0.00 0.00 0.00 3.41
1235 1291 4.988716 TGTCCCTCGTCGGCCTGT 62.989 66.667 0.00 0.00 0.00 4.00
1431 1497 1.004918 CGTCCTCTTGGCGAAGGTT 60.005 57.895 8.73 0.00 35.80 3.50
1491 1557 1.343075 GGTACCTGGATGGACTGGAGA 60.343 57.143 4.06 0.00 39.71 3.71
1575 1641 9.982651 GATAGCAATACAAACTAATACTCTGGA 57.017 33.333 0.00 0.00 0.00 3.86
1576 1642 9.209175 GGATAGCAATACAAACTAATACTCTGG 57.791 37.037 0.00 0.00 0.00 3.86
1577 1643 9.988815 AGGATAGCAATACAAACTAATACTCTG 57.011 33.333 0.00 0.00 0.00 3.35
1578 1644 9.988815 CAGGATAGCAATACAAACTAATACTCT 57.011 33.333 0.00 0.00 0.00 3.24
1757 1831 6.015180 AGTGCACATGTGAATTTCAAGGTTAT 60.015 34.615 29.80 0.00 0.00 1.89
1762 1836 4.613944 ACAGTGCACATGTGAATTTCAAG 58.386 39.130 29.80 14.25 0.00 3.02
1763 1837 4.652421 ACAGTGCACATGTGAATTTCAA 57.348 36.364 29.80 2.25 0.00 2.69
1765 1839 4.445385 GGAAACAGTGCACATGTGAATTTC 59.555 41.667 29.80 22.69 0.00 2.17
1766 1840 4.141981 TGGAAACAGTGCACATGTGAATTT 60.142 37.500 29.80 16.17 35.01 1.82
1767 1841 3.384146 TGGAAACAGTGCACATGTGAATT 59.616 39.130 29.80 13.62 35.01 2.17
1768 1842 2.957680 TGGAAACAGTGCACATGTGAAT 59.042 40.909 29.80 10.88 35.01 2.57
1769 1843 2.373224 TGGAAACAGTGCACATGTGAA 58.627 42.857 29.80 17.53 35.01 3.18
1770 1844 2.049888 TGGAAACAGTGCACATGTGA 57.950 45.000 29.80 11.67 35.01 3.58
1788 1862 4.685165 TGTGAATTCAAACGAAATGGCATG 59.315 37.500 10.35 0.00 0.00 4.06
1789 1863 4.880759 TGTGAATTCAAACGAAATGGCAT 58.119 34.783 10.35 0.00 0.00 4.40
1906 1981 5.064452 CAGCCTGATAAAGCAAACAGTCTAG 59.936 44.000 0.00 0.00 0.00 2.43
2184 2260 0.744874 GTGTACTAGCGCCTGGATCA 59.255 55.000 2.29 0.00 0.00 2.92
2304 2389 6.597672 TGCAAATACTACTGGTATGAAACTGG 59.402 38.462 0.00 0.00 40.62 4.00
2332 2417 7.012421 CGCAGTGCTGGTATAGATATGTCTATA 59.988 40.741 14.33 13.54 44.05 1.31
2355 2447 1.872234 GTAGAGCACGAATCGCGCA 60.872 57.895 17.98 0.00 46.04 6.09
2364 2457 1.064296 CGGCCACTAGTAGAGCACG 59.936 63.158 2.24 12.85 0.00 5.34
2417 2510 2.861364 GTGTTCACCCACACACACA 58.139 52.632 0.00 0.00 45.57 3.72
2471 3702 1.153329 AAACGGTCGAGGTTGCACA 60.153 52.632 2.81 0.00 0.00 4.57
2499 3730 5.470098 TGGAAGAAATTTCTCGGAAGAAGTG 59.530 40.000 20.71 0.00 42.36 3.16
2501 3732 5.703130 AGTGGAAGAAATTTCTCGGAAGAAG 59.297 40.000 20.71 0.00 42.36 2.85
2502 3733 5.621193 AGTGGAAGAAATTTCTCGGAAGAA 58.379 37.500 20.71 1.15 41.32 2.52
2506 3737 4.041691 AGGAAGTGGAAGAAATTTCTCGGA 59.958 41.667 20.71 5.18 36.28 4.55
2536 3767 2.965147 GAGGAAGGAGAGGATGAGAAGG 59.035 54.545 0.00 0.00 0.00 3.46
2591 3822 0.259938 GCCTCCTCAACCCCATTGAT 59.740 55.000 0.00 0.00 46.37 2.57
2623 3854 4.980592 TCTGCCACAGCCCCTCCA 62.981 66.667 0.00 0.00 38.69 3.86
2666 3897 1.815421 CAATCTCCACGAAGGCCGG 60.815 63.158 0.00 0.00 43.93 6.13
2673 3904 2.297895 CCCCCACCAATCTCCACGA 61.298 63.158 0.00 0.00 0.00 4.35
2674 3905 2.272146 CCCCCACCAATCTCCACG 59.728 66.667 0.00 0.00 0.00 4.94
2715 3946 3.554692 GCCATTCTCGTCGTGCGG 61.555 66.667 0.00 0.00 41.72 5.69
2738 3969 1.091537 CAACAAACACACGTCCCAGT 58.908 50.000 0.00 0.00 0.00 4.00
2740 3971 0.035343 TCCAACAAACACACGTCCCA 60.035 50.000 0.00 0.00 0.00 4.37
2747 3978 3.492309 GCATCCAACATCCAACAAACACA 60.492 43.478 0.00 0.00 0.00 3.72
2835 4066 0.038526 CAGTGTTACGTCGCCCTCTT 60.039 55.000 0.00 0.00 0.00 2.85
2909 4140 3.385755 GGCAAATCAGCAGGGATACAAAT 59.614 43.478 0.00 0.00 34.96 2.32
2957 4190 7.214467 ACATCGGGGCAAATAAATTACTATG 57.786 36.000 0.00 0.00 0.00 2.23
2958 4191 7.833285 AACATCGGGGCAAATAAATTACTAT 57.167 32.000 0.00 0.00 0.00 2.12
2976 4209 2.549754 ACAGAAGCAACTCCAAACATCG 59.450 45.455 0.00 0.00 0.00 3.84
3001 4234 2.440539 ACTCGAAGCAACTACCTGTG 57.559 50.000 0.00 0.00 0.00 3.66
3002 4235 2.628657 AGAACTCGAAGCAACTACCTGT 59.371 45.455 0.00 0.00 0.00 4.00
3005 4238 2.231721 AGGAGAACTCGAAGCAACTACC 59.768 50.000 0.00 0.00 0.00 3.18
3014 4247 4.340097 TGTAGTTGTCAAGGAGAACTCGAA 59.660 41.667 11.42 0.00 41.27 3.71
3030 4263 4.247258 TGTTACTAACCGGCATGTAGTTG 58.753 43.478 0.00 0.00 0.00 3.16
3035 4268 3.343941 ACATGTTACTAACCGGCATGT 57.656 42.857 13.73 13.73 43.36 3.21
3042 4275 7.263496 ACGAAGAGGATAACATGTTACTAACC 58.737 38.462 20.26 18.60 0.00 2.85
3049 4289 6.574350 CCTTCTACGAAGAGGATAACATGTT 58.426 40.000 16.68 16.68 30.47 2.71
3050 4290 5.452077 GCCTTCTACGAAGAGGATAACATGT 60.452 44.000 5.24 0.00 30.47 3.21
3052 4292 4.649674 TGCCTTCTACGAAGAGGATAACAT 59.350 41.667 5.24 0.00 30.47 2.71
3114 4354 0.100503 GCACAAAGCACACGGAAAGT 59.899 50.000 0.00 0.00 44.79 2.66
3354 4610 2.683768 CTGCCTCCTTGTAGGTATCCT 58.316 52.381 0.00 0.00 39.02 3.24
3381 4637 3.046374 TCTAGAAAGAGGCAATACCCCC 58.954 50.000 0.00 0.00 40.58 5.40
3382 4638 4.344359 CTCTAGAAAGAGGCAATACCCC 57.656 50.000 0.00 0.00 44.82 4.95
3401 4657 2.134933 GTCGTCCCCCATCCCTCTC 61.135 68.421 0.00 0.00 0.00 3.20
3416 4672 0.249489 CCCTATTTGCTCGGGAGTCG 60.249 60.000 0.00 0.00 40.55 4.18
3423 4679 0.179045 CCAGGTCCCCTATTTGCTCG 60.179 60.000 0.00 0.00 29.64 5.03
3568 5168 6.237861 CGCTCAACTTGTTAGTATTCTTAGGC 60.238 42.308 0.00 0.00 33.17 3.93
3632 5234 9.330063 TGCTGTAGGAACATCAATATCTAAAAG 57.670 33.333 0.00 0.00 34.37 2.27
3690 5292 5.465724 GGTTATAGCGGAAACATCTACAAGG 59.534 44.000 0.00 0.00 0.00 3.61
3734 5336 5.490139 TTCAACAAAGCTTCAGAAGTCAG 57.510 39.130 11.94 2.85 0.00 3.51
3735 5337 6.455360 AATTCAACAAAGCTTCAGAAGTCA 57.545 33.333 11.94 0.00 0.00 3.41
3736 5338 8.856490 TTAAATTCAACAAAGCTTCAGAAGTC 57.144 30.769 11.94 4.48 0.00 3.01
3737 5339 9.822185 AATTAAATTCAACAAAGCTTCAGAAGT 57.178 25.926 11.94 0.00 0.00 3.01
3792 5394 6.438425 ACTGCTGTCAAATCCCAGAAAAATAT 59.562 34.615 0.00 0.00 0.00 1.28
3915 5517 6.825213 CCACACCATCTATTCAAAGAGAATGA 59.175 38.462 0.85 0.00 46.24 2.57
3924 5526 7.629157 TCTGAAATACCACACCATCTATTCAA 58.371 34.615 0.00 0.00 0.00 2.69
3956 5560 9.941325 ATTGGCATGATTTTATCAGTGTAAAAA 57.059 25.926 0.00 9.80 43.53 1.94
3979 5583 3.044809 GCAGGCTGCACATCAATTG 57.955 52.632 33.33 0.00 44.26 2.32
4123 5727 7.700846 TGACCCTATCCAATAACTGGTTAAAA 58.299 34.615 0.00 0.00 46.51 1.52
4127 5731 5.994416 ATGACCCTATCCAATAACTGGTT 57.006 39.130 0.00 0.00 46.51 3.67
4130 5734 7.416664 CCAACAAATGACCCTATCCAATAACTG 60.417 40.741 0.00 0.00 0.00 3.16
4165 5769 6.017026 TGCCAAGTTCATGTCGTTTGTTTATA 60.017 34.615 0.00 0.00 0.00 0.98
4188 5792 3.244033 ACAGTCTGACTAGCAATCTGC 57.756 47.619 10.47 0.00 45.46 4.26
4263 5867 3.682858 GCACTTGCACGAACCTATTAGAA 59.317 43.478 0.00 0.00 41.59 2.10
4279 5883 6.372659 ACAGAAATAACATCAGTAGGCACTTG 59.627 38.462 0.00 0.00 41.75 3.16
4301 5905 6.202954 CAGTCCTGTAGTTCCACTAAAAACAG 59.797 42.308 0.00 0.00 31.62 3.16
4337 5956 3.737559 AAGGGATGTGGCATAGTTTGA 57.262 42.857 0.00 0.00 0.00 2.69
4376 5998 6.730960 AACATGAGCATGCCATTTTAAAAG 57.269 33.333 15.66 6.48 42.39 2.27
4388 6010 5.389098 GCTTTACTGCAAAAACATGAGCATG 60.389 40.000 8.82 8.82 44.15 4.06
4389 6011 4.687483 GCTTTACTGCAAAAACATGAGCAT 59.313 37.500 0.00 0.00 36.28 3.79
4393 6015 4.662468 TGGCTTTACTGCAAAAACATGA 57.338 36.364 0.00 0.00 34.04 3.07
4431 6053 5.389859 TGCTCCCAAAATACTTGAACATG 57.610 39.130 0.00 0.00 0.00 3.21
4531 6153 4.165779 CCAAGTGGCGAATAAACAATGTC 58.834 43.478 0.00 0.00 0.00 3.06
4535 6157 2.554893 GTCCCAAGTGGCGAATAAACAA 59.445 45.455 0.00 0.00 0.00 2.83
4545 6167 1.339151 CCTGTCTTAGTCCCAAGTGGC 60.339 57.143 0.00 0.00 0.00 5.01
4546 6168 1.279271 CCCTGTCTTAGTCCCAAGTGG 59.721 57.143 0.00 0.00 0.00 4.00
4561 6186 1.212935 AGAGTTGCAACAAGTCCCTGT 59.787 47.619 30.11 7.13 0.00 4.00
4568 6193 2.360165 AGAAAGCCAGAGTTGCAACAAG 59.640 45.455 30.11 18.43 0.00 3.16
4581 6206 8.458843 GCACAAGATAGTTTTAATAGAAAGCCA 58.541 33.333 0.00 0.00 0.00 4.75
4599 6224 3.570975 TGCAGAACAGAAATGCACAAGAT 59.429 39.130 0.00 0.00 44.56 2.40
4600 6225 2.950975 TGCAGAACAGAAATGCACAAGA 59.049 40.909 0.00 0.00 44.56 3.02
4601 6226 3.358707 TGCAGAACAGAAATGCACAAG 57.641 42.857 0.00 0.00 44.56 3.16
4606 6231 6.429078 TCCTGATATATGCAGAACAGAAATGC 59.571 38.462 12.69 0.00 40.40 3.56
4607 6232 7.974482 TCCTGATATATGCAGAACAGAAATG 57.026 36.000 12.69 0.66 35.39 2.32
4608 6233 8.985315 TTTCCTGATATATGCAGAACAGAAAT 57.015 30.769 12.69 0.00 35.39 2.17
4609 6234 8.806429 TTTTCCTGATATATGCAGAACAGAAA 57.194 30.769 12.69 9.79 35.39 2.52
4610 6235 7.500227 CCTTTTCCTGATATATGCAGAACAGAA 59.500 37.037 12.69 5.99 35.39 3.02
4617 6242 6.537355 TCCTTCCTTTTCCTGATATATGCAG 58.463 40.000 0.00 0.00 0.00 4.41
4627 6252 2.959465 ACCACTCCTTCCTTTTCCTG 57.041 50.000 0.00 0.00 0.00 3.86
4635 6260 1.475682 CGTACAGGTACCACTCCTTCC 59.524 57.143 15.94 0.00 32.37 3.46
4776 6401 9.744468 AACAAAATGAAATCCACTACAGTAAAC 57.256 29.630 0.00 0.00 0.00 2.01
4789 6414 8.498358 CCTTCTAGGCAAAAACAAAATGAAATC 58.502 33.333 0.00 0.00 0.00 2.17
4807 6432 8.674607 GGTATGACACAAATAAAACCTTCTAGG 58.325 37.037 0.00 0.00 42.49 3.02
4809 6434 9.802039 AAGGTATGACACAAATAAAACCTTCTA 57.198 29.630 0.00 0.00 41.09 2.10
4826 6451 7.174253 TGTCAGAACACCAATTTAAGGTATGAC 59.826 37.037 6.63 6.63 37.23 3.06
4828 6453 7.390440 TCTGTCAGAACACCAATTTAAGGTATG 59.610 37.037 0.00 0.00 37.23 2.39
4845 6470 6.126863 AGGGACATACATTTTCTGTCAGAA 57.873 37.500 11.36 11.36 40.80 3.02
4883 6511 5.904362 AAGGGCTGTCTTATTTTGCTAAG 57.096 39.130 0.00 0.00 0.00 2.18
4909 6537 2.024414 GCACCAATGATCCTAACACCC 58.976 52.381 0.00 0.00 0.00 4.61
4913 6541 7.771183 TCAAAATAAGCACCAATGATCCTAAC 58.229 34.615 0.00 0.00 0.00 2.34
4914 6542 7.953005 TCAAAATAAGCACCAATGATCCTAA 57.047 32.000 0.00 0.00 0.00 2.69
5007 6635 8.100791 TCAGCACAATAACATTCCCCTATATAC 58.899 37.037 0.00 0.00 0.00 1.47
5089 6717 0.609131 CCCAAGTTTGCCATCCTCGT 60.609 55.000 0.00 0.00 0.00 4.18
5092 6720 4.118584 GCCCAAGTTTGCCATCCT 57.881 55.556 0.00 0.00 0.00 3.24
5103 6731 1.546029 GTAAAGCAAAGGAGGCCCAAG 59.454 52.381 0.00 0.00 33.88 3.61
5118 6746 9.846248 CAGAATTCCTACAAAATTCCTGTAAAG 57.154 33.333 0.65 0.00 41.82 1.85
5121 6749 9.231297 CTTCAGAATTCCTACAAAATTCCTGTA 57.769 33.333 0.65 1.61 41.82 2.74
5123 6751 7.394359 TCCTTCAGAATTCCTACAAAATTCCTG 59.606 37.037 0.65 0.00 41.82 3.86
5135 6763 9.539194 ACAAAATTTCTATCCTTCAGAATTCCT 57.461 29.630 0.65 0.00 32.27 3.36
5157 6785 8.635328 GGTCTCCAAAGGAATTTTAACTACAAA 58.365 33.333 0.00 0.00 0.00 2.83
5158 6786 8.002459 AGGTCTCCAAAGGAATTTTAACTACAA 58.998 33.333 0.00 0.00 0.00 2.41
5159 6787 7.523415 AGGTCTCCAAAGGAATTTTAACTACA 58.477 34.615 0.00 0.00 0.00 2.74
5160 6788 7.997773 AGGTCTCCAAAGGAATTTTAACTAC 57.002 36.000 0.00 0.00 0.00 2.73
5161 6789 8.856103 CAAAGGTCTCCAAAGGAATTTTAACTA 58.144 33.333 0.00 0.00 0.00 2.24
5162 6790 7.202001 CCAAAGGTCTCCAAAGGAATTTTAACT 60.202 37.037 0.00 0.00 0.00 2.24
5163 6791 6.929049 CCAAAGGTCTCCAAAGGAATTTTAAC 59.071 38.462 0.00 0.00 0.00 2.01
5164 6792 6.613679 ACCAAAGGTCTCCAAAGGAATTTTAA 59.386 34.615 0.00 0.00 0.00 1.52
5165 6793 6.140377 ACCAAAGGTCTCCAAAGGAATTTTA 58.860 36.000 0.00 0.00 0.00 1.52
5166 6794 4.968719 ACCAAAGGTCTCCAAAGGAATTTT 59.031 37.500 0.00 0.00 0.00 1.82
5167 6795 4.556697 ACCAAAGGTCTCCAAAGGAATTT 58.443 39.130 0.00 0.00 0.00 1.82
5168 6796 4.199002 ACCAAAGGTCTCCAAAGGAATT 57.801 40.909 0.00 0.00 0.00 2.17
5169 6797 3.903530 ACCAAAGGTCTCCAAAGGAAT 57.096 42.857 0.00 0.00 0.00 3.01
5170 6798 3.680777 AACCAAAGGTCTCCAAAGGAA 57.319 42.857 0.00 0.00 33.12 3.36
5171 6799 3.295973 CAAACCAAAGGTCTCCAAAGGA 58.704 45.455 0.00 0.00 33.12 3.36
5172 6800 3.031013 ACAAACCAAAGGTCTCCAAAGG 58.969 45.455 0.00 0.00 33.12 3.11
5173 6801 4.278419 CCTACAAACCAAAGGTCTCCAAAG 59.722 45.833 0.00 0.00 33.12 2.77
5174 6802 4.079672 TCCTACAAACCAAAGGTCTCCAAA 60.080 41.667 0.00 0.00 33.12 3.28
5175 6803 3.460340 TCCTACAAACCAAAGGTCTCCAA 59.540 43.478 0.00 0.00 33.12 3.53
5176 6804 3.050089 TCCTACAAACCAAAGGTCTCCA 58.950 45.455 0.00 0.00 33.12 3.86
5177 6805 3.782656 TCCTACAAACCAAAGGTCTCC 57.217 47.619 0.00 0.00 33.12 3.71
5178 6806 4.392138 CGATTCCTACAAACCAAAGGTCTC 59.608 45.833 0.00 0.00 33.12 3.36
5179 6807 4.041198 TCGATTCCTACAAACCAAAGGTCT 59.959 41.667 0.00 0.00 33.12 3.85
5180 6808 4.320870 TCGATTCCTACAAACCAAAGGTC 58.679 43.478 0.00 0.00 33.12 3.85
5181 6809 4.360951 TCGATTCCTACAAACCAAAGGT 57.639 40.909 0.00 0.00 37.65 3.50
5182 6810 5.880341 GAATCGATTCCTACAAACCAAAGG 58.120 41.667 24.74 0.00 0.00 3.11
5195 6823 6.595716 CCTACATGGAAATAGGAATCGATTCC 59.404 42.308 38.92 38.92 46.73 3.01
5196 6824 7.386851 TCCTACATGGAAATAGGAATCGATTC 58.613 38.462 26.64 26.64 43.26 2.52
5197 6825 7.316393 TCCTACATGGAAATAGGAATCGATT 57.684 36.000 11.20 11.20 43.26 3.34
5198 6826 6.935240 TCCTACATGGAAATAGGAATCGAT 57.065 37.500 7.23 0.00 43.26 3.59
5219 6847 8.906867 TGAAATGTGAAGGATTGATTTCTATCC 58.093 33.333 11.62 11.62 44.86 2.59
5223 6851 8.038944 CCATTGAAATGTGAAGGATTGATTTCT 58.961 33.333 0.00 0.00 35.15 2.52
5224 6852 8.036575 TCCATTGAAATGTGAAGGATTGATTTC 58.963 33.333 2.55 0.00 34.60 2.17
5225 6853 7.909518 TCCATTGAAATGTGAAGGATTGATTT 58.090 30.769 2.55 0.00 34.60 2.17
5226 6854 7.484993 TCCATTGAAATGTGAAGGATTGATT 57.515 32.000 2.55 0.00 34.60 2.57
5227 6855 7.484993 TTCCATTGAAATGTGAAGGATTGAT 57.515 32.000 2.55 0.00 34.60 2.57
5228 6856 6.914654 TTCCATTGAAATGTGAAGGATTGA 57.085 33.333 2.55 0.00 34.60 2.57
5229 6857 7.658575 AGTTTTCCATTGAAATGTGAAGGATTG 59.341 33.333 2.55 0.00 40.08 2.67
5230 6858 7.738847 AGTTTTCCATTGAAATGTGAAGGATT 58.261 30.769 2.55 0.00 40.08 3.01
5231 6859 7.307131 AGTTTTCCATTGAAATGTGAAGGAT 57.693 32.000 2.55 0.00 40.08 3.24
5232 6860 6.729690 AGTTTTCCATTGAAATGTGAAGGA 57.270 33.333 2.55 0.00 40.08 3.36
5233 6861 7.925483 TGTTAGTTTTCCATTGAAATGTGAAGG 59.075 33.333 2.55 0.00 40.08 3.46
5234 6862 8.870160 TGTTAGTTTTCCATTGAAATGTGAAG 57.130 30.769 2.55 0.00 40.08 3.02
5235 6863 9.829507 AATGTTAGTTTTCCATTGAAATGTGAA 57.170 25.926 2.55 3.41 40.08 3.18
5246 6874 9.668497 GAGTCTAGGTTAATGTTAGTTTTCCAT 57.332 33.333 0.00 0.00 0.00 3.41
5247 6875 8.653191 TGAGTCTAGGTTAATGTTAGTTTTCCA 58.347 33.333 0.00 0.00 0.00 3.53
5248 6876 9.498176 TTGAGTCTAGGTTAATGTTAGTTTTCC 57.502 33.333 0.00 0.00 0.00 3.13
5284 6912 9.881649 GAGATGTTATTTGATGCATAGGATAGA 57.118 33.333 0.00 0.00 0.00 1.98
5285 6913 9.887629 AGAGATGTTATTTGATGCATAGGATAG 57.112 33.333 0.00 0.00 0.00 2.08
5287 6915 9.584008 AAAGAGATGTTATTTGATGCATAGGAT 57.416 29.630 0.00 0.00 0.00 3.24
5288 6916 8.985315 AAAGAGATGTTATTTGATGCATAGGA 57.015 30.769 0.00 0.00 0.00 2.94
5289 6917 8.295288 GGAAAGAGATGTTATTTGATGCATAGG 58.705 37.037 0.00 0.00 0.00 2.57
5290 6918 8.295288 GGGAAAGAGATGTTATTTGATGCATAG 58.705 37.037 0.00 0.00 0.00 2.23
5291 6919 8.000709 AGGGAAAGAGATGTTATTTGATGCATA 58.999 33.333 0.00 0.00 0.00 3.14
5292 6920 6.837568 AGGGAAAGAGATGTTATTTGATGCAT 59.162 34.615 0.00 0.00 0.00 3.96
5293 6921 6.189859 AGGGAAAGAGATGTTATTTGATGCA 58.810 36.000 0.00 0.00 0.00 3.96
5294 6922 6.705863 AGGGAAAGAGATGTTATTTGATGC 57.294 37.500 0.00 0.00 0.00 3.91
5295 6923 9.270640 CTCTAGGGAAAGAGATGTTATTTGATG 57.729 37.037 0.00 0.00 44.93 3.07
5296 6924 7.936301 GCTCTAGGGAAAGAGATGTTATTTGAT 59.064 37.037 5.09 0.00 44.93 2.57
5297 6925 7.275920 GCTCTAGGGAAAGAGATGTTATTTGA 58.724 38.462 5.09 0.00 44.93 2.69
5298 6926 6.484977 GGCTCTAGGGAAAGAGATGTTATTTG 59.515 42.308 5.09 0.00 44.93 2.32
5299 6927 6.158695 TGGCTCTAGGGAAAGAGATGTTATTT 59.841 38.462 5.09 0.00 44.93 1.40
5300 6928 5.667626 TGGCTCTAGGGAAAGAGATGTTATT 59.332 40.000 5.09 0.00 44.93 1.40
5301 6929 5.219739 TGGCTCTAGGGAAAGAGATGTTAT 58.780 41.667 5.09 0.00 44.93 1.89
5302 6930 4.620723 TGGCTCTAGGGAAAGAGATGTTA 58.379 43.478 5.09 0.00 44.93 2.41
5303 6931 3.454858 TGGCTCTAGGGAAAGAGATGTT 58.545 45.455 5.09 0.00 44.93 2.71
5304 6932 3.121929 TGGCTCTAGGGAAAGAGATGT 57.878 47.619 5.09 0.00 44.93 3.06
5305 6933 4.102210 TCAATGGCTCTAGGGAAAGAGATG 59.898 45.833 5.09 0.00 44.93 2.90
5306 6934 4.302067 TCAATGGCTCTAGGGAAAGAGAT 58.698 43.478 5.09 0.00 44.93 2.75
5307 6935 3.708631 CTCAATGGCTCTAGGGAAAGAGA 59.291 47.826 5.09 0.00 44.93 3.10
5308 6936 3.708631 TCTCAATGGCTCTAGGGAAAGAG 59.291 47.826 0.00 0.00 44.92 2.85
5309 6937 3.724478 TCTCAATGGCTCTAGGGAAAGA 58.276 45.455 0.00 0.00 0.00 2.52
5310 6938 4.387598 CATCTCAATGGCTCTAGGGAAAG 58.612 47.826 0.00 0.00 0.00 2.62
5311 6939 3.434167 GCATCTCAATGGCTCTAGGGAAA 60.434 47.826 0.00 0.00 33.19 3.13
5312 6940 2.105477 GCATCTCAATGGCTCTAGGGAA 59.895 50.000 0.00 0.00 33.19 3.97
5313 6941 1.696336 GCATCTCAATGGCTCTAGGGA 59.304 52.381 0.00 0.00 33.19 4.20
5314 6942 1.419012 TGCATCTCAATGGCTCTAGGG 59.581 52.381 0.00 0.00 33.19 3.53
5315 6943 2.924757 TGCATCTCAATGGCTCTAGG 57.075 50.000 0.00 0.00 33.19 3.02
5316 6944 3.741249 ACATGCATCTCAATGGCTCTAG 58.259 45.455 0.00 0.00 33.19 2.43
5317 6945 3.135167 TGACATGCATCTCAATGGCTCTA 59.865 43.478 1.73 0.00 33.19 2.43
5318 6946 2.092592 TGACATGCATCTCAATGGCTCT 60.093 45.455 1.73 0.00 33.19 4.09
5319 6947 2.294979 TGACATGCATCTCAATGGCTC 58.705 47.619 1.73 0.00 33.19 4.70
5320 6948 2.430248 TGACATGCATCTCAATGGCT 57.570 45.000 1.73 0.00 33.19 4.75
5330 6958 3.928005 AGGAAGTGAGATGACATGCAT 57.072 42.857 0.00 0.00 40.77 3.96
5331 6959 4.406649 TCATAGGAAGTGAGATGACATGCA 59.593 41.667 0.00 0.00 0.00 3.96
5332 6960 4.953667 TCATAGGAAGTGAGATGACATGC 58.046 43.478 0.00 0.00 0.00 4.06
5333 6961 8.447924 AAAATCATAGGAAGTGAGATGACATG 57.552 34.615 0.00 0.00 31.41 3.21
5334 6962 7.718753 GGAAAATCATAGGAAGTGAGATGACAT 59.281 37.037 0.00 0.00 31.41 3.06
5335 6963 7.050377 GGAAAATCATAGGAAGTGAGATGACA 58.950 38.462 0.00 0.00 31.41 3.58
5336 6964 7.278875 AGGAAAATCATAGGAAGTGAGATGAC 58.721 38.462 0.00 0.00 31.41 3.06
5337 6965 7.443302 AGGAAAATCATAGGAAGTGAGATGA 57.557 36.000 0.00 0.00 33.09 2.92
5338 6966 9.790344 AATAGGAAAATCATAGGAAGTGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
5340 6968 8.432805 GGAATAGGAAAATCATAGGAAGTGAGA 58.567 37.037 0.00 0.00 0.00 3.27
5341 6969 8.435982 AGGAATAGGAAAATCATAGGAAGTGAG 58.564 37.037 0.00 0.00 0.00 3.51
5342 6970 8.337118 AGGAATAGGAAAATCATAGGAAGTGA 57.663 34.615 0.00 0.00 0.00 3.41
5352 6980 8.531982 CCTCGTATCATAGGAATAGGAAAATCA 58.468 37.037 0.00 0.00 34.58 2.57
5353 6981 8.750298 TCCTCGTATCATAGGAATAGGAAAATC 58.250 37.037 0.00 0.00 38.97 2.17
5354 6982 8.666129 TCCTCGTATCATAGGAATAGGAAAAT 57.334 34.615 0.00 0.00 38.97 1.82
5866 7494 9.881649 GAGATGTTATTTGATGCATAGGATAGA 57.118 33.333 0.00 0.00 0.00 1.98
5867 7495 9.887629 AGAGATGTTATTTGATGCATAGGATAG 57.112 33.333 0.00 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.