Multiple sequence alignment - TraesCS1D01G083700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G083700 chr1D 100.000 3401 0 0 1 3401 66630592 66627192 0.000000e+00 6281.0
1 TraesCS1D01G083700 chr1D 93.689 206 13 0 1 206 66658778 66658573 3.300000e-80 309.0
2 TraesCS1D01G083700 chr1D 93.689 206 13 0 1 206 480489069 480489274 3.300000e-80 309.0
3 TraesCS1D01G083700 chr1D 93.659 205 13 0 1 205 61374612 61374408 1.190000e-79 307.0
4 TraesCS1D01G083700 chr1D 93.689 206 12 1 1 206 112975136 112974932 1.190000e-79 307.0
5 TraesCS1D01G083700 chr1D 92.891 211 14 1 1 210 399251374 399251164 4.260000e-79 305.0
6 TraesCS1D01G083700 chr1D 94.388 196 11 0 10 205 47726270 47726075 5.520000e-78 302.0
7 TraesCS1D01G083700 chr1D 93.204 206 13 1 1 206 58751613 58751409 5.520000e-78 302.0
8 TraesCS1D01G083700 chr1D 93.237 207 11 2 1 206 63963718 63963514 5.520000e-78 302.0
9 TraesCS1D01G083700 chr1D 93.171 205 14 0 1 205 291962942 291963146 5.520000e-78 302.0
10 TraesCS1D01G083700 chr1D 94.819 193 7 3 1384 1575 425080090 425080280 7.130000e-77 298.0
11 TraesCS1D01G083700 chr1D 94.595 185 9 1 1391 1575 38867382 38867565 5.550000e-73 285.0
12 TraesCS1D01G083700 chr1D 90.698 129 12 0 2839 2967 66597793 66597665 4.510000e-39 172.0
13 TraesCS1D01G083700 chr1B 94.680 1015 31 7 2406 3401 107152290 107151280 0.000000e+00 1554.0
14 TraesCS1D01G083700 chr1B 89.094 1137 60 29 958 2068 107153816 107152718 0.000000e+00 1354.0
15 TraesCS1D01G083700 chr1B 88.151 557 42 8 328 864 107166074 107165522 2.860000e-180 641.0
16 TraesCS1D01G083700 chr1B 96.012 326 13 0 2084 2409 107152737 107152412 6.460000e-147 531.0
17 TraesCS1D01G083700 chr1B 93.939 99 6 0 231 329 614972530 614972628 2.110000e-32 150.0
18 TraesCS1D01G083700 chr1B 79.208 101 15 6 232 329 377009467 377009370 7.880000e-07 65.8
19 TraesCS1D01G083700 chr1A 92.028 1129 48 14 978 2073 65393533 65392414 0.000000e+00 1548.0
20 TraesCS1D01G083700 chr1A 91.591 773 32 8 2084 2824 65392438 65391667 0.000000e+00 1037.0
21 TraesCS1D01G083700 chr1A 90.196 765 40 20 2084 2824 65276695 65275942 0.000000e+00 965.0
22 TraesCS1D01G083700 chr1A 96.454 564 19 1 2838 3401 65275959 65275397 0.000000e+00 929.0
23 TraesCS1D01G083700 chr1A 94.861 467 20 3 2838 3304 65391684 65391222 0.000000e+00 726.0
24 TraesCS1D01G083700 chr1A 95.395 456 17 3 2849 3304 65334077 65333626 0.000000e+00 723.0
25 TraesCS1D01G083700 chr1A 95.771 402 16 1 2838 3239 65330417 65330017 0.000000e+00 647.0
26 TraesCS1D01G083700 chr1A 95.522 402 17 1 2838 3239 65385226 65384826 2.860000e-180 641.0
27 TraesCS1D01G083700 chr1A 95.274 402 18 1 2838 3239 65381850 65381450 1.330000e-178 636.0
28 TraesCS1D01G083700 chr1A 87.791 516 15 9 2342 2824 65382333 65381833 8.240000e-156 560.0
29 TraesCS1D01G083700 chr1A 87.791 516 15 10 2342 2824 65385709 65385209 8.240000e-156 560.0
30 TraesCS1D01G083700 chr1A 87.621 517 15 10 2342 2824 65330901 65330400 3.830000e-154 555.0
31 TraesCS1D01G083700 chr1A 87.597 516 16 9 2342 2824 65388512 65388012 3.830000e-154 555.0
32 TraesCS1D01G083700 chr1A 95.312 256 12 0 2838 3093 65381418 65381163 1.140000e-109 407.0
33 TraesCS1D01G083700 chr1A 95.312 256 12 0 2838 3093 65384794 65384539 1.140000e-109 407.0
34 TraesCS1D01G083700 chr1A 94.531 256 14 0 2838 3093 65329985 65329730 2.460000e-106 396.0
35 TraesCS1D01G083700 chr1A 88.298 282 24 2 3127 3399 65360854 65360573 2.530000e-86 329.0
36 TraesCS1D01G083700 chr1A 87.986 283 23 6 3127 3399 65322233 65321952 1.180000e-84 324.0
37 TraesCS1D01G083700 chr1A 86.577 298 8 8 2545 2810 65334372 65334075 1.980000e-77 300.0
38 TraesCS1D01G083700 chr1A 91.324 219 17 2 1832 2049 65277052 65276835 7.130000e-77 298.0
39 TraesCS1D01G083700 chr1A 91.324 219 17 2 1832 2049 65334874 65334657 7.130000e-77 298.0
40 TraesCS1D01G083700 chr1A 92.386 197 4 4 1649 1834 65308342 65308146 1.560000e-68 270.0
41 TraesCS1D01G083700 chr1A 91.371 197 6 4 1649 1834 65355723 65355527 3.370000e-65 259.0
42 TraesCS1D01G083700 chr1A 89.474 152 11 1 2084 2235 65334517 65334371 1.610000e-43 187.0
43 TraesCS1D01G083700 chr1A 91.176 102 9 0 230 331 474641674 474641775 4.580000e-29 139.0
44 TraesCS1D01G083700 chr1A 100.000 53 0 0 2772 2824 65330020 65329968 7.770000e-17 99.0
45 TraesCS1D01G083700 chr1A 100.000 53 0 0 2772 2824 65381453 65381401 7.770000e-17 99.0
46 TraesCS1D01G083700 chr1A 100.000 36 0 0 816 851 65393596 65393561 2.190000e-07 67.6
47 TraesCS1D01G083700 chr2D 95.694 209 9 0 1392 1600 425602039 425602247 1.510000e-88 337.0
48 TraesCS1D01G083700 chr2D 95.074 203 10 0 4 206 637540507 637540305 1.520000e-83 320.0
49 TraesCS1D01G083700 chr2D 93.750 208 12 1 1 208 651357789 651357583 9.160000e-81 311.0
50 TraesCS1D01G083700 chr2D 94.089 203 12 0 1 203 156609028 156609230 3.300000e-80 309.0
51 TraesCS1D01G083700 chr2D 84.746 118 13 5 213 329 169180961 169181074 2.770000e-21 113.0
52 TraesCS1D01G083700 chr2D 92.308 39 3 0 233 271 625150416 625150378 4.740000e-04 56.5
53 TraesCS1D01G083700 chr3D 94.258 209 12 0 1392 1600 517388525 517388733 1.520000e-83 320.0
54 TraesCS1D01G083700 chr3D 94.258 209 12 0 1392 1600 603158727 603158935 1.520000e-83 320.0
55 TraesCS1D01G083700 chr3D 94.175 206 12 0 1392 1597 611641563 611641768 7.080000e-82 315.0
56 TraesCS1D01G083700 chr7D 94.175 206 12 0 1 206 8761960 8762165 7.080000e-82 315.0
57 TraesCS1D01G083700 chr7D 94.146 205 12 0 1 205 401804584 401804380 2.550000e-81 313.0
58 TraesCS1D01G083700 chr7D 90.385 104 10 0 233 336 168580015 168579912 1.650000e-28 137.0
59 TraesCS1D01G083700 chr4D 94.175 206 12 0 1 206 398613730 398613525 7.080000e-82 315.0
60 TraesCS1D01G083700 chr4D 93.659 205 13 0 1 205 165955155 165955359 1.190000e-79 307.0
61 TraesCS1D01G083700 chr4D 93.689 206 12 1 1 206 372564016 372564220 1.190000e-79 307.0
62 TraesCS1D01G083700 chr2A 94.581 203 11 0 1 203 303235320 303235522 7.080000e-82 315.0
63 TraesCS1D01G083700 chr2A 93.396 212 12 2 1 212 337888229 337888020 2.550000e-81 313.0
64 TraesCS1D01G083700 chr2A 90.741 108 7 3 225 329 728602674 728602567 1.270000e-29 141.0
65 TraesCS1D01G083700 chr5D 94.146 205 12 0 1 205 15491399 15491603 2.550000e-81 313.0
66 TraesCS1D01G083700 chr5D 94.146 205 11 1 1 205 415206194 415205991 9.160000e-81 311.0
67 TraesCS1D01G083700 chr5D 92.746 193 12 2 1384 1575 254080093 254080284 9.290000e-71 278.0
68 TraesCS1D01G083700 chr5D 80.488 123 13 9 212 329 416422250 416422366 2.170000e-12 84.2
69 TraesCS1D01G083700 chr6D 90.732 205 19 0 1 205 295267987 295268191 1.200000e-69 274.0
70 TraesCS1D01G083700 chr6D 89.151 212 22 1 1 212 338347271 338347061 2.600000e-66 263.0
71 TraesCS1D01G083700 chr6D 88.235 221 18 6 1 219 148964334 148964120 1.210000e-64 257.0
72 TraesCS1D01G083700 chr6D 88.128 219 22 3 1 218 383531638 383531853 1.210000e-64 257.0
73 TraesCS1D01G083700 chr6D 88.517 209 20 4 10 218 421546075 421545871 2.030000e-62 250.0
74 TraesCS1D01G083700 chr6D 88.406 207 21 2 1 207 6533586 6533789 2.620000e-61 246.0
75 TraesCS1D01G083700 chr6D 86.937 222 15 11 1 213 126808950 126809166 1.580000e-58 237.0
76 TraesCS1D01G083700 chr6D 85.593 236 20 12 1 226 69874273 69874042 5.670000e-58 235.0
77 TraesCS1D01G083700 chr7B 90.000 110 10 1 228 337 425252173 425252065 1.270000e-29 141.0
78 TraesCS1D01G083700 chr7A 90.566 106 8 2 228 332 205167760 205167864 4.580000e-29 139.0
79 TraesCS1D01G083700 chr7A 91.919 99 8 0 233 331 466253073 466252975 4.580000e-29 139.0
80 TraesCS1D01G083700 chr4A 89.091 110 9 3 229 338 41591242 41591348 2.130000e-27 134.0
81 TraesCS1D01G083700 chr4A 81.522 92 15 2 212 301 714339007 714338916 1.310000e-09 75.0
82 TraesCS1D01G083700 chr4B 88.785 107 12 0 233 339 621424792 621424686 7.660000e-27 132.0
83 TraesCS1D01G083700 chr4B 83.621 116 13 6 213 326 542626598 542626487 1.670000e-18 104.0
84 TraesCS1D01G083700 chr6A 77.311 119 21 6 213 329 545822067 545821953 7.880000e-07 65.8
85 TraesCS1D01G083700 chr5B 79.208 101 15 6 232 329 175223907 175223810 7.880000e-07 65.8
86 TraesCS1D01G083700 chr2B 86.275 51 5 1 210 260 561106898 561106946 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G083700 chr1D 66627192 66630592 3400 True 6281.000000 6281 100.000000 1 3401 1 chr1D.!!$R6 3400
1 TraesCS1D01G083700 chr1B 107151280 107153816 2536 True 1146.333333 1554 93.262000 958 3401 3 chr1B.!!$R3 2443
2 TraesCS1D01G083700 chr1B 107165522 107166074 552 True 641.000000 641 88.151000 328 864 1 chr1B.!!$R1 536
3 TraesCS1D01G083700 chr1A 65275397 65277052 1655 True 730.666667 965 92.658000 1832 3401 3 chr1A.!!$R5 1569
4 TraesCS1D01G083700 chr1A 65381163 65393596 12433 True 603.633333 1548 93.589917 816 3304 12 chr1A.!!$R7 2488
5 TraesCS1D01G083700 chr1A 65329730 65334874 5144 True 400.625000 723 92.586625 1832 3304 8 chr1A.!!$R6 1472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.036010 CACTCTCCCCGCTTGTTGAT 60.036 55.000 0.0 0.0 0.0 2.57 F
1024 1051 0.101759 TTATCGTCTTCCTTCCGCCG 59.898 55.000 0.0 0.0 0.0 6.46 F
1339 1373 1.220749 GACGCCTTGCCAGACCATA 59.779 57.895 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 2010 0.162507 CGTCACTTTCTTGCGCAGAG 59.837 55.000 11.31 11.6 31.12 3.35 R
1958 2046 2.098117 GGTTAATCATGGACTGCTGCAC 59.902 50.000 0.00 0.0 0.00 4.57 R
2895 6686 2.202987 CCGGCATGGAGAGTGAGC 60.203 66.667 0.00 0.0 42.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.577059 CACGGAGGTGCCATACGT 59.423 61.111 0.00 0.00 37.35 3.57
25 26 1.079405 CACGGAGGTGCCATACGTT 60.079 57.895 0.00 0.00 37.35 3.99
26 27 1.082117 CACGGAGGTGCCATACGTTC 61.082 60.000 0.00 0.00 37.35 3.95
27 28 1.876714 CGGAGGTGCCATACGTTCG 60.877 63.158 0.00 0.00 39.50 3.95
28 29 1.520787 GGAGGTGCCATACGTTCGG 60.521 63.158 0.00 0.00 36.34 4.30
29 30 1.217244 GAGGTGCCATACGTTCGGT 59.783 57.895 0.00 0.00 0.00 4.69
30 31 1.079405 AGGTGCCATACGTTCGGTG 60.079 57.895 0.00 0.00 0.00 4.94
31 32 1.375013 GGTGCCATACGTTCGGTGT 60.375 57.895 0.00 0.00 0.00 4.16
32 33 0.952010 GGTGCCATACGTTCGGTGTT 60.952 55.000 0.00 0.00 0.00 3.32
33 34 0.869730 GTGCCATACGTTCGGTGTTT 59.130 50.000 0.00 0.00 0.00 2.83
34 35 0.869068 TGCCATACGTTCGGTGTTTG 59.131 50.000 0.00 0.00 0.00 2.93
35 36 0.167251 GCCATACGTTCGGTGTTTGG 59.833 55.000 0.00 7.39 40.22 3.28
36 37 1.798283 CCATACGTTCGGTGTTTGGA 58.202 50.000 0.00 0.00 39.81 3.53
37 38 2.352388 CCATACGTTCGGTGTTTGGAT 58.648 47.619 0.00 0.00 39.81 3.41
38 39 3.523547 CCATACGTTCGGTGTTTGGATA 58.476 45.455 0.00 0.00 39.81 2.59
39 40 3.554324 CCATACGTTCGGTGTTTGGATAG 59.446 47.826 0.00 0.00 39.81 2.08
40 41 2.088950 ACGTTCGGTGTTTGGATAGG 57.911 50.000 0.00 0.00 0.00 2.57
41 42 1.345415 ACGTTCGGTGTTTGGATAGGT 59.655 47.619 0.00 0.00 0.00 3.08
42 43 2.224354 ACGTTCGGTGTTTGGATAGGTT 60.224 45.455 0.00 0.00 0.00 3.50
43 44 2.158841 CGTTCGGTGTTTGGATAGGTTG 59.841 50.000 0.00 0.00 0.00 3.77
44 45 2.483014 TCGGTGTTTGGATAGGTTGG 57.517 50.000 0.00 0.00 0.00 3.77
45 46 1.979308 TCGGTGTTTGGATAGGTTGGA 59.021 47.619 0.00 0.00 0.00 3.53
46 47 2.574369 TCGGTGTTTGGATAGGTTGGAT 59.426 45.455 0.00 0.00 0.00 3.41
47 48 2.943033 CGGTGTTTGGATAGGTTGGATC 59.057 50.000 0.00 0.00 0.00 3.36
48 49 2.943033 GGTGTTTGGATAGGTTGGATCG 59.057 50.000 0.00 0.00 0.00 3.69
49 50 3.606687 GTGTTTGGATAGGTTGGATCGT 58.393 45.455 0.00 0.00 0.00 3.73
50 51 3.374058 GTGTTTGGATAGGTTGGATCGTG 59.626 47.826 0.00 0.00 0.00 4.35
51 52 3.262151 TGTTTGGATAGGTTGGATCGTGA 59.738 43.478 0.00 0.00 0.00 4.35
52 53 4.258543 GTTTGGATAGGTTGGATCGTGAA 58.741 43.478 0.00 0.00 0.00 3.18
53 54 3.819564 TGGATAGGTTGGATCGTGAAG 57.180 47.619 0.00 0.00 0.00 3.02
54 55 3.371034 TGGATAGGTTGGATCGTGAAGA 58.629 45.455 0.00 0.00 0.00 2.87
55 56 3.132289 TGGATAGGTTGGATCGTGAAGAC 59.868 47.826 0.00 0.00 0.00 3.01
57 58 0.966920 AGGTTGGATCGTGAAGACGT 59.033 50.000 0.00 0.00 46.20 4.34
58 59 1.343465 AGGTTGGATCGTGAAGACGTT 59.657 47.619 0.00 0.00 46.20 3.99
59 60 1.725164 GGTTGGATCGTGAAGACGTTC 59.275 52.381 0.00 0.00 46.20 3.95
60 61 1.385743 GTTGGATCGTGAAGACGTTCG 59.614 52.381 0.00 0.00 46.20 3.95
61 62 0.876399 TGGATCGTGAAGACGTTCGA 59.124 50.000 0.00 0.00 46.20 3.71
62 63 1.257539 GGATCGTGAAGACGTTCGAC 58.742 55.000 0.00 0.00 46.20 4.20
63 64 1.135746 GGATCGTGAAGACGTTCGACT 60.136 52.381 0.00 0.00 46.20 4.18
64 65 2.094894 GGATCGTGAAGACGTTCGACTA 59.905 50.000 0.00 0.00 46.20 2.59
65 66 2.584166 TCGTGAAGACGTTCGACTAC 57.416 50.000 0.00 0.00 46.20 2.73
66 67 1.866601 TCGTGAAGACGTTCGACTACA 59.133 47.619 0.00 0.00 46.20 2.74
67 68 2.481568 TCGTGAAGACGTTCGACTACAT 59.518 45.455 0.00 0.00 46.20 2.29
68 69 2.839026 CGTGAAGACGTTCGACTACATC 59.161 50.000 0.00 0.00 40.91 3.06
69 70 3.666111 CGTGAAGACGTTCGACTACATCA 60.666 47.826 0.00 0.00 40.91 3.07
70 71 4.224433 GTGAAGACGTTCGACTACATCAA 58.776 43.478 0.00 0.00 35.17 2.57
71 72 4.088213 GTGAAGACGTTCGACTACATCAAC 59.912 45.833 0.00 0.00 35.17 3.18
72 73 3.213249 AGACGTTCGACTACATCAACC 57.787 47.619 0.00 0.00 0.00 3.77
73 74 1.909532 GACGTTCGACTACATCAACCG 59.090 52.381 0.00 0.00 0.00 4.44
74 75 0.638746 CGTTCGACTACATCAACCGC 59.361 55.000 0.00 0.00 0.00 5.68
75 76 0.638746 GTTCGACTACATCAACCGCG 59.361 55.000 0.00 0.00 0.00 6.46
76 77 0.241749 TTCGACTACATCAACCGCGT 59.758 50.000 4.92 0.00 0.00 6.01
77 78 0.241749 TCGACTACATCAACCGCGTT 59.758 50.000 4.92 0.00 0.00 4.84
78 79 1.468127 TCGACTACATCAACCGCGTTA 59.532 47.619 4.92 0.00 0.00 3.18
79 80 1.580704 CGACTACATCAACCGCGTTAC 59.419 52.381 4.92 0.00 0.00 2.50
80 81 2.730090 CGACTACATCAACCGCGTTACT 60.730 50.000 4.92 0.00 0.00 2.24
81 82 3.485711 CGACTACATCAACCGCGTTACTA 60.486 47.826 4.92 0.00 0.00 1.82
82 83 4.414852 GACTACATCAACCGCGTTACTAA 58.585 43.478 4.92 0.00 0.00 2.24
83 84 4.808558 ACTACATCAACCGCGTTACTAAA 58.191 39.130 4.92 0.00 0.00 1.85
84 85 4.622740 ACTACATCAACCGCGTTACTAAAC 59.377 41.667 4.92 0.00 0.00 2.01
85 86 3.391965 ACATCAACCGCGTTACTAAACA 58.608 40.909 4.92 0.00 35.16 2.83
86 87 3.184986 ACATCAACCGCGTTACTAAACAC 59.815 43.478 4.92 0.00 35.16 3.32
87 88 3.096489 TCAACCGCGTTACTAAACACT 57.904 42.857 4.92 0.00 35.16 3.55
88 89 3.456280 TCAACCGCGTTACTAAACACTT 58.544 40.909 4.92 0.00 35.16 3.16
89 90 3.490526 TCAACCGCGTTACTAAACACTTC 59.509 43.478 4.92 0.00 35.16 3.01
90 91 2.407090 ACCGCGTTACTAAACACTTCC 58.593 47.619 4.92 0.00 35.16 3.46
91 92 1.387756 CCGCGTTACTAAACACTTCCG 59.612 52.381 4.92 0.00 35.16 4.30
92 93 1.201736 CGCGTTACTAAACACTTCCGC 60.202 52.381 0.00 0.00 35.16 5.54
93 94 2.064014 GCGTTACTAAACACTTCCGCT 58.936 47.619 0.00 0.00 37.14 5.52
94 95 2.477754 GCGTTACTAAACACTTCCGCTT 59.522 45.455 0.00 0.00 37.14 4.68
95 96 3.059393 GCGTTACTAAACACTTCCGCTTT 60.059 43.478 0.00 0.00 37.14 3.51
96 97 4.695200 CGTTACTAAACACTTCCGCTTTC 58.305 43.478 0.00 0.00 35.16 2.62
97 98 4.662394 CGTTACTAAACACTTCCGCTTTCG 60.662 45.833 0.00 0.00 35.16 3.46
98 99 4.376717 GTTACTAAACACTTCCGCTTTCGG 60.377 45.833 0.00 0.00 44.90 4.30
99 100 6.752971 GTTACTAAACACTTCCGCTTTCGGT 61.753 44.000 3.54 0.00 44.40 4.69
100 101 8.452036 GTTACTAAACACTTCCGCTTTCGGTC 62.452 46.154 3.54 0.00 44.40 4.79
108 109 3.274393 CGCTTTCGGTCTATGAGGG 57.726 57.895 0.00 0.00 0.00 4.30
109 110 0.460311 CGCTTTCGGTCTATGAGGGT 59.540 55.000 0.00 0.00 0.00 4.34
110 111 1.802880 CGCTTTCGGTCTATGAGGGTG 60.803 57.143 0.00 0.00 0.00 4.61
111 112 1.941325 CTTTCGGTCTATGAGGGTGC 58.059 55.000 0.00 0.00 0.00 5.01
112 113 0.174845 TTTCGGTCTATGAGGGTGCG 59.825 55.000 0.00 0.00 0.00 5.34
113 114 0.968901 TTCGGTCTATGAGGGTGCGT 60.969 55.000 0.00 0.00 0.00 5.24
114 115 1.226974 CGGTCTATGAGGGTGCGTG 60.227 63.158 0.00 0.00 0.00 5.34
115 116 1.144057 GGTCTATGAGGGTGCGTGG 59.856 63.158 0.00 0.00 0.00 4.94
116 117 1.327690 GGTCTATGAGGGTGCGTGGA 61.328 60.000 0.00 0.00 0.00 4.02
117 118 0.179108 GTCTATGAGGGTGCGTGGAC 60.179 60.000 0.00 0.00 0.00 4.02
118 119 0.613572 TCTATGAGGGTGCGTGGACA 60.614 55.000 0.00 0.00 0.00 4.02
119 120 0.460284 CTATGAGGGTGCGTGGACAC 60.460 60.000 0.00 0.00 39.94 3.67
120 121 1.188871 TATGAGGGTGCGTGGACACA 61.189 55.000 3.12 0.00 42.55 3.72
121 122 2.665185 GAGGGTGCGTGGACACAC 60.665 66.667 3.12 0.00 44.64 3.82
123 124 2.665185 GGGTGCGTGGACACACTC 60.665 66.667 3.12 0.00 45.50 3.51
124 125 2.421739 GGTGCGTGGACACACTCT 59.578 61.111 3.12 0.00 45.50 3.24
125 126 1.664965 GGTGCGTGGACACACTCTC 60.665 63.158 3.12 0.00 45.50 3.20
126 127 1.664965 GTGCGTGGACACACTCTCC 60.665 63.158 3.12 0.00 45.50 3.71
127 128 2.048127 GCGTGGACACACTCTCCC 60.048 66.667 3.12 0.00 45.50 4.30
128 129 2.657237 CGTGGACACACTCTCCCC 59.343 66.667 3.12 0.00 45.50 4.81
129 130 2.657237 GTGGACACACTCTCCCCG 59.343 66.667 0.00 0.00 44.29 5.73
130 131 3.311110 TGGACACACTCTCCCCGC 61.311 66.667 0.00 0.00 0.00 6.13
131 132 2.997897 GGACACACTCTCCCCGCT 60.998 66.667 0.00 0.00 0.00 5.52
132 133 2.584391 GGACACACTCTCCCCGCTT 61.584 63.158 0.00 0.00 0.00 4.68
133 134 1.374758 GACACACTCTCCCCGCTTG 60.375 63.158 0.00 0.00 0.00 4.01
134 135 2.100879 GACACACTCTCCCCGCTTGT 62.101 60.000 0.00 0.00 0.00 3.16
135 136 1.071471 CACACTCTCCCCGCTTGTT 59.929 57.895 0.00 0.00 0.00 2.83
136 137 1.071471 ACACTCTCCCCGCTTGTTG 59.929 57.895 0.00 0.00 0.00 3.33
137 138 1.371183 CACTCTCCCCGCTTGTTGA 59.629 57.895 0.00 0.00 0.00 3.18
138 139 0.036010 CACTCTCCCCGCTTGTTGAT 60.036 55.000 0.00 0.00 0.00 2.57
139 140 1.207089 CACTCTCCCCGCTTGTTGATA 59.793 52.381 0.00 0.00 0.00 2.15
140 141 2.119495 ACTCTCCCCGCTTGTTGATAT 58.881 47.619 0.00 0.00 0.00 1.63
141 142 2.158900 ACTCTCCCCGCTTGTTGATATG 60.159 50.000 0.00 0.00 0.00 1.78
142 143 0.947244 CTCCCCGCTTGTTGATATGC 59.053 55.000 0.00 0.00 0.00 3.14
143 144 0.254462 TCCCCGCTTGTTGATATGCA 59.746 50.000 0.00 0.00 0.00 3.96
144 145 1.133823 TCCCCGCTTGTTGATATGCAT 60.134 47.619 3.79 3.79 0.00 3.96
145 146 1.267806 CCCCGCTTGTTGATATGCATC 59.732 52.381 0.19 0.00 0.00 3.91
146 147 2.224606 CCCGCTTGTTGATATGCATCT 58.775 47.619 0.19 0.00 31.93 2.90
147 148 2.225019 CCCGCTTGTTGATATGCATCTC 59.775 50.000 0.19 3.24 31.93 2.75
148 149 2.225019 CCGCTTGTTGATATGCATCTCC 59.775 50.000 0.19 0.00 31.93 3.71
149 150 3.136763 CGCTTGTTGATATGCATCTCCT 58.863 45.455 0.19 0.00 31.93 3.69
150 151 4.309933 CGCTTGTTGATATGCATCTCCTA 58.690 43.478 0.19 0.00 31.93 2.94
151 152 4.388165 CGCTTGTTGATATGCATCTCCTAG 59.612 45.833 0.19 0.00 31.93 3.02
152 153 5.545588 GCTTGTTGATATGCATCTCCTAGA 58.454 41.667 0.19 0.00 31.93 2.43
153 154 6.171921 GCTTGTTGATATGCATCTCCTAGAT 58.828 40.000 0.19 0.00 34.74 1.98
154 155 7.326454 GCTTGTTGATATGCATCTCCTAGATA 58.674 38.462 0.19 0.00 32.12 1.98
155 156 7.492020 GCTTGTTGATATGCATCTCCTAGATAG 59.508 40.741 0.19 0.00 32.12 2.08
156 157 8.655935 TTGTTGATATGCATCTCCTAGATAGA 57.344 34.615 0.19 0.00 32.12 1.98
157 158 8.835550 TGTTGATATGCATCTCCTAGATAGAT 57.164 34.615 0.19 0.00 32.12 1.98
158 159 8.911965 TGTTGATATGCATCTCCTAGATAGATC 58.088 37.037 0.19 0.00 32.12 2.75
159 160 9.135189 GTTGATATGCATCTCCTAGATAGATCT 57.865 37.037 0.19 0.00 32.12 2.75
160 161 9.712250 TTGATATGCATCTCCTAGATAGATCTT 57.288 33.333 0.19 0.00 32.12 2.40
161 162 9.134055 TGATATGCATCTCCTAGATAGATCTTG 57.866 37.037 0.19 0.00 32.12 3.02
162 163 5.657826 TGCATCTCCTAGATAGATCTTGC 57.342 43.478 0.00 0.69 38.32 4.01
163 164 4.157472 TGCATCTCCTAGATAGATCTTGCG 59.843 45.833 0.00 0.00 36.48 4.85
164 165 4.157656 GCATCTCCTAGATAGATCTTGCGT 59.842 45.833 0.00 0.00 38.32 5.24
165 166 5.639757 CATCTCCTAGATAGATCTTGCGTG 58.360 45.833 0.00 0.00 38.32 5.34
166 167 4.974399 TCTCCTAGATAGATCTTGCGTGA 58.026 43.478 0.00 0.00 38.32 4.35
167 168 5.565509 TCTCCTAGATAGATCTTGCGTGAT 58.434 41.667 0.00 0.00 38.32 3.06
168 169 5.645929 TCTCCTAGATAGATCTTGCGTGATC 59.354 44.000 0.00 9.82 42.18 2.92
169 170 4.393371 TCCTAGATAGATCTTGCGTGATCG 59.607 45.833 0.00 0.00 45.35 3.69
170 171 4.155099 CCTAGATAGATCTTGCGTGATCGT 59.845 45.833 0.00 6.35 45.35 3.73
171 172 5.351740 CCTAGATAGATCTTGCGTGATCGTA 59.648 44.000 0.00 6.70 45.35 3.43
172 173 5.289917 AGATAGATCTTGCGTGATCGTAG 57.710 43.478 0.00 0.00 45.35 3.51
173 174 2.783828 AGATCTTGCGTGATCGTAGG 57.216 50.000 11.44 0.00 45.35 3.18
174 175 2.025155 AGATCTTGCGTGATCGTAGGT 58.975 47.619 11.44 0.00 45.35 3.08
175 176 3.211865 AGATCTTGCGTGATCGTAGGTA 58.788 45.455 11.44 0.00 45.35 3.08
176 177 3.630769 AGATCTTGCGTGATCGTAGGTAA 59.369 43.478 11.44 0.00 45.35 2.85
177 178 3.853831 TCTTGCGTGATCGTAGGTAAA 57.146 42.857 0.00 0.00 39.49 2.01
178 179 4.380841 TCTTGCGTGATCGTAGGTAAAT 57.619 40.909 0.00 0.00 39.49 1.40
179 180 4.751060 TCTTGCGTGATCGTAGGTAAATT 58.249 39.130 0.00 0.00 39.49 1.82
180 181 5.172934 TCTTGCGTGATCGTAGGTAAATTT 58.827 37.500 0.00 0.00 39.49 1.82
181 182 5.640357 TCTTGCGTGATCGTAGGTAAATTTT 59.360 36.000 0.00 0.00 39.49 1.82
182 183 5.866335 TGCGTGATCGTAGGTAAATTTTT 57.134 34.783 0.00 0.00 39.49 1.94
199 200 2.147436 TTTTGAAATGCTGCGTTCCC 57.853 45.000 7.67 4.02 0.00 3.97
200 201 0.316841 TTTGAAATGCTGCGTTCCCC 59.683 50.000 7.67 1.62 0.00 4.81
201 202 0.825425 TTGAAATGCTGCGTTCCCCA 60.825 50.000 7.67 4.15 0.00 4.96
202 203 0.825425 TGAAATGCTGCGTTCCCCAA 60.825 50.000 7.67 0.00 0.00 4.12
203 204 0.388520 GAAATGCTGCGTTCCCCAAC 60.389 55.000 7.67 0.00 0.00 3.77
204 205 1.112315 AAATGCTGCGTTCCCCAACA 61.112 50.000 7.67 0.00 32.14 3.33
205 206 1.526575 AATGCTGCGTTCCCCAACAG 61.527 55.000 0.24 0.00 32.14 3.16
207 208 2.594303 CTGCGTTCCCCAACAGCA 60.594 61.111 0.00 0.00 38.70 4.41
208 209 2.904866 TGCGTTCCCCAACAGCAC 60.905 61.111 0.00 0.00 37.22 4.40
209 210 2.594592 GCGTTCCCCAACAGCACT 60.595 61.111 0.00 0.00 34.31 4.40
210 211 2.908073 GCGTTCCCCAACAGCACTG 61.908 63.158 0.00 0.00 34.31 3.66
211 212 1.227823 CGTTCCCCAACAGCACTGA 60.228 57.895 4.31 0.00 32.14 3.41
212 213 1.507141 CGTTCCCCAACAGCACTGAC 61.507 60.000 4.31 0.00 32.14 3.51
213 214 0.179018 GTTCCCCAACAGCACTGACT 60.179 55.000 4.31 0.00 32.14 3.41
214 215 1.071699 GTTCCCCAACAGCACTGACTA 59.928 52.381 4.31 0.00 32.14 2.59
215 216 1.656587 TCCCCAACAGCACTGACTAT 58.343 50.000 4.31 0.00 0.00 2.12
216 217 1.278985 TCCCCAACAGCACTGACTATG 59.721 52.381 4.31 0.00 0.00 2.23
217 218 1.278985 CCCCAACAGCACTGACTATGA 59.721 52.381 4.31 0.00 0.00 2.15
218 219 2.625737 CCCAACAGCACTGACTATGAG 58.374 52.381 4.31 0.00 0.00 2.90
219 220 2.005451 CCAACAGCACTGACTATGAGC 58.995 52.381 4.31 0.00 0.00 4.26
220 221 2.613725 CCAACAGCACTGACTATGAGCA 60.614 50.000 4.31 0.00 0.00 4.26
221 222 2.376808 ACAGCACTGACTATGAGCAC 57.623 50.000 4.31 0.00 0.00 4.40
222 223 1.898472 ACAGCACTGACTATGAGCACT 59.102 47.619 4.31 0.00 0.00 4.40
223 224 2.094286 ACAGCACTGACTATGAGCACTC 60.094 50.000 4.31 0.00 0.00 3.51
224 225 1.480137 AGCACTGACTATGAGCACTCC 59.520 52.381 0.00 0.00 0.00 3.85
225 226 1.205655 GCACTGACTATGAGCACTCCA 59.794 52.381 0.00 0.00 0.00 3.86
226 227 2.738000 GCACTGACTATGAGCACTCCAG 60.738 54.545 0.00 0.00 0.00 3.86
227 228 2.106566 ACTGACTATGAGCACTCCAGG 58.893 52.381 0.00 0.00 0.00 4.45
228 229 2.106566 CTGACTATGAGCACTCCAGGT 58.893 52.381 0.00 0.00 0.00 4.00
229 230 2.499289 CTGACTATGAGCACTCCAGGTT 59.501 50.000 0.00 0.00 0.00 3.50
230 231 3.701542 CTGACTATGAGCACTCCAGGTTA 59.298 47.826 0.00 0.00 0.00 2.85
231 232 3.447586 TGACTATGAGCACTCCAGGTTAC 59.552 47.826 0.00 0.00 0.00 2.50
232 233 3.702045 GACTATGAGCACTCCAGGTTACT 59.298 47.826 0.00 0.00 0.00 2.24
233 234 4.868268 ACTATGAGCACTCCAGGTTACTA 58.132 43.478 0.00 0.00 0.00 1.82
234 235 4.645588 ACTATGAGCACTCCAGGTTACTAC 59.354 45.833 0.00 0.00 0.00 2.73
235 236 3.170991 TGAGCACTCCAGGTTACTACT 57.829 47.619 0.00 0.00 0.00 2.57
236 237 3.090037 TGAGCACTCCAGGTTACTACTC 58.910 50.000 0.00 0.00 0.00 2.59
237 238 2.427812 GAGCACTCCAGGTTACTACTCC 59.572 54.545 0.00 0.00 0.00 3.85
238 239 1.481363 GCACTCCAGGTTACTACTCCC 59.519 57.143 0.00 0.00 0.00 4.30
239 240 2.888911 GCACTCCAGGTTACTACTCCCT 60.889 54.545 0.00 0.00 0.00 4.20
240 241 3.025262 CACTCCAGGTTACTACTCCCTC 58.975 54.545 0.00 0.00 0.00 4.30
241 242 2.024177 ACTCCAGGTTACTACTCCCTCC 60.024 54.545 0.00 0.00 0.00 4.30
242 243 1.064166 TCCAGGTTACTACTCCCTCCG 60.064 57.143 0.00 0.00 0.00 4.63
243 244 1.341778 CCAGGTTACTACTCCCTCCGT 60.342 57.143 0.00 0.00 0.00 4.69
244 245 2.022934 CAGGTTACTACTCCCTCCGTC 58.977 57.143 0.00 0.00 0.00 4.79
245 246 1.064091 AGGTTACTACTCCCTCCGTCC 60.064 57.143 0.00 0.00 0.00 4.79
246 247 1.397672 GTTACTACTCCCTCCGTCCC 58.602 60.000 0.00 0.00 0.00 4.46
247 248 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
248 249 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
249 250 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
250 251 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
251 252 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
252 253 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
253 254 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
254 255 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
255 256 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
256 257 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
257 258 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
258 259 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
259 260 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
260 261 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
261 262 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
262 263 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
263 264 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
264 265 5.106436 CCGTCCCAAAATAAGTGTCTTAACC 60.106 44.000 0.00 0.00 0.00 2.85
265 266 5.704053 CGTCCCAAAATAAGTGTCTTAACCT 59.296 40.000 0.00 0.00 0.00 3.50
266 267 6.206048 CGTCCCAAAATAAGTGTCTTAACCTT 59.794 38.462 0.00 0.00 0.00 3.50
267 268 7.388500 CGTCCCAAAATAAGTGTCTTAACCTTA 59.612 37.037 0.00 0.00 0.00 2.69
268 269 9.070179 GTCCCAAAATAAGTGTCTTAACCTTAA 57.930 33.333 0.00 0.00 0.00 1.85
269 270 9.816787 TCCCAAAATAAGTGTCTTAACCTTAAT 57.183 29.630 0.00 0.00 0.00 1.40
315 316 9.528018 AATACAAAGTTGTGACACTTATTTTGG 57.472 29.630 21.37 11.44 42.31 3.28
316 317 7.164230 ACAAAGTTGTGACACTTATTTTGGA 57.836 32.000 21.37 0.00 40.49 3.53
317 318 7.607250 ACAAAGTTGTGACACTTATTTTGGAA 58.393 30.769 21.37 1.50 40.49 3.53
318 319 7.544217 ACAAAGTTGTGACACTTATTTTGGAAC 59.456 33.333 21.37 10.70 40.49 3.62
319 320 5.816919 AGTTGTGACACTTATTTTGGAACG 58.183 37.500 7.20 0.00 0.00 3.95
320 321 4.822036 TGTGACACTTATTTTGGAACGG 57.178 40.909 7.20 0.00 0.00 4.44
321 322 4.452825 TGTGACACTTATTTTGGAACGGA 58.547 39.130 7.20 0.00 0.00 4.69
322 323 4.513692 TGTGACACTTATTTTGGAACGGAG 59.486 41.667 7.20 0.00 0.00 4.63
323 324 4.753107 GTGACACTTATTTTGGAACGGAGA 59.247 41.667 0.00 0.00 0.00 3.71
324 325 4.994852 TGACACTTATTTTGGAACGGAGAG 59.005 41.667 0.00 0.00 0.00 3.20
325 326 5.221561 TGACACTTATTTTGGAACGGAGAGA 60.222 40.000 0.00 0.00 0.00 3.10
326 327 5.238583 ACACTTATTTTGGAACGGAGAGAG 58.761 41.667 0.00 0.00 0.00 3.20
394 395 6.389906 GGTAAACATGCTCACTTTATTGCTT 58.610 36.000 0.00 0.00 0.00 3.91
399 400 9.793252 AAACATGCTCACTTTATTGCTTAATAG 57.207 29.630 0.00 0.00 0.00 1.73
400 401 8.737168 ACATGCTCACTTTATTGCTTAATAGA 57.263 30.769 0.00 0.00 0.00 1.98
444 445 5.890752 AGGGTTATCTAGGCTTAAGAACC 57.109 43.478 6.67 13.84 0.00 3.62
454 455 2.673368 GGCTTAAGAACCAGACATGACG 59.327 50.000 6.67 0.00 0.00 4.35
457 458 0.687354 AAGAACCAGACATGACGCCT 59.313 50.000 0.00 0.00 0.00 5.52
474 475 3.561725 ACGCCTTTGTGAAAGAGAAAGAG 59.438 43.478 0.00 0.00 41.02 2.85
479 480 4.494350 TTGTGAAAGAGAAAGAGCATGC 57.506 40.909 10.51 10.51 0.00 4.06
520 521 6.595716 ACCTCTACATTAGACATGCAAACTTC 59.404 38.462 0.00 0.00 0.00 3.01
570 571 4.991056 CCATAATCCGGTGTTGTATCTCTG 59.009 45.833 0.00 0.00 0.00 3.35
594 595 2.956132 TGATGGTGGTGTTGTTTCCAT 58.044 42.857 0.00 0.00 40.92 3.41
595 596 3.303938 TGATGGTGGTGTTGTTTCCATT 58.696 40.909 0.00 0.00 38.74 3.16
596 597 3.320541 TGATGGTGGTGTTGTTTCCATTC 59.679 43.478 0.00 0.00 38.74 2.67
597 598 2.739943 TGGTGGTGTTGTTTCCATTCA 58.260 42.857 0.00 0.00 36.09 2.57
612 613 4.442706 TCCATTCATTCGAGCCTTTACTC 58.557 43.478 0.00 0.00 0.00 2.59
634 635 7.593825 ACTCAAATCAGTAACCAAACTATTGC 58.406 34.615 0.00 0.00 35.10 3.56
638 639 8.863049 CAAATCAGTAACCAAACTATTGCAATC 58.137 33.333 16.86 0.00 35.10 2.67
650 651 2.205022 TTGCAATCAGTGGCTAGCTT 57.795 45.000 15.72 0.00 0.00 3.74
658 659 2.093816 TCAGTGGCTAGCTTGATGTGAG 60.094 50.000 15.72 0.00 0.00 3.51
661 662 1.901833 TGGCTAGCTTGATGTGAGTCA 59.098 47.619 15.72 0.00 0.00 3.41
676 677 4.081697 TGTGAGTCAAATTGAGATCCGCTA 60.082 41.667 0.00 0.00 0.00 4.26
677 678 4.268884 GTGAGTCAAATTGAGATCCGCTAC 59.731 45.833 0.00 0.00 0.00 3.58
692 693 5.252586 TCCGCTACTACTACCTGGAATAT 57.747 43.478 0.00 0.00 0.00 1.28
711 712 2.715737 TGGGATACTTGCGCAAAAAC 57.284 45.000 25.01 13.35 0.00 2.43
728 729 5.559417 GCAAAAACAAGAATGCACATTGGAG 60.559 40.000 0.00 0.00 38.63 3.86
739 740 3.071312 TGCACATTGGAGCAAAAGGAAAT 59.929 39.130 3.90 0.00 37.68 2.17
748 749 3.160269 AGCAAAAGGAAATGGGAGACAG 58.840 45.455 0.00 0.00 0.00 3.51
749 750 2.353109 GCAAAAGGAAATGGGAGACAGC 60.353 50.000 0.00 0.00 0.00 4.40
754 755 2.092538 AGGAAATGGGAGACAGCAGATG 60.093 50.000 0.00 0.00 0.00 2.90
798 811 5.013495 TGAGAATGAGAGGTCCAATCAACTT 59.987 40.000 0.59 0.00 0.00 2.66
871 892 3.061848 GTGGCCCACACCATTCCG 61.062 66.667 9.55 0.00 44.49 4.30
873 894 4.740822 GGCCCACACCATTCCGCT 62.741 66.667 0.00 0.00 0.00 5.52
874 895 3.443045 GCCCACACCATTCCGCTG 61.443 66.667 0.00 0.00 0.00 5.18
875 896 2.350895 CCCACACCATTCCGCTGA 59.649 61.111 0.00 0.00 0.00 4.26
876 897 1.077501 CCCACACCATTCCGCTGAT 60.078 57.895 0.00 0.00 0.00 2.90
877 898 0.680921 CCCACACCATTCCGCTGATT 60.681 55.000 0.00 0.00 0.00 2.57
878 899 1.176527 CCACACCATTCCGCTGATTT 58.823 50.000 0.00 0.00 0.00 2.17
879 900 1.545582 CCACACCATTCCGCTGATTTT 59.454 47.619 0.00 0.00 0.00 1.82
880 901 2.598589 CACACCATTCCGCTGATTTTG 58.401 47.619 0.00 0.00 0.00 2.44
881 902 1.067635 ACACCATTCCGCTGATTTTGC 60.068 47.619 0.00 0.00 0.00 3.68
882 903 0.532115 ACCATTCCGCTGATTTTGCC 59.468 50.000 0.00 0.00 0.00 4.52
883 904 0.819582 CCATTCCGCTGATTTTGCCT 59.180 50.000 0.00 0.00 0.00 4.75
884 905 2.023673 CCATTCCGCTGATTTTGCCTA 58.976 47.619 0.00 0.00 0.00 3.93
885 906 2.426738 CCATTCCGCTGATTTTGCCTAA 59.573 45.455 0.00 0.00 0.00 2.69
886 907 3.068590 CCATTCCGCTGATTTTGCCTAAT 59.931 43.478 0.00 0.00 0.00 1.73
887 908 4.278170 CCATTCCGCTGATTTTGCCTAATA 59.722 41.667 0.00 0.00 0.00 0.98
888 909 5.221224 CCATTCCGCTGATTTTGCCTAATAA 60.221 40.000 0.00 0.00 0.00 1.40
889 910 5.906113 TTCCGCTGATTTTGCCTAATAAA 57.094 34.783 0.00 0.00 0.00 1.40
890 911 5.906113 TCCGCTGATTTTGCCTAATAAAA 57.094 34.783 0.00 0.00 0.00 1.52
891 912 6.274157 TCCGCTGATTTTGCCTAATAAAAA 57.726 33.333 0.00 0.00 31.54 1.94
912 933 3.302365 AAACAAGAAACATCCCATGCG 57.698 42.857 0.00 0.00 0.00 4.73
913 934 1.176527 ACAAGAAACATCCCATGCGG 58.823 50.000 0.00 0.00 0.00 5.69
915 936 1.818060 CAAGAAACATCCCATGCGGAA 59.182 47.619 6.97 0.00 46.47 4.30
916 937 2.214376 AGAAACATCCCATGCGGAAA 57.786 45.000 6.97 0.00 46.47 3.13
917 938 2.738743 AGAAACATCCCATGCGGAAAT 58.261 42.857 6.97 0.00 46.47 2.17
918 939 3.897239 AGAAACATCCCATGCGGAAATA 58.103 40.909 6.97 0.00 46.47 1.40
919 940 4.277476 AGAAACATCCCATGCGGAAATAA 58.723 39.130 6.97 0.00 46.47 1.40
920 941 4.097892 AGAAACATCCCATGCGGAAATAAC 59.902 41.667 6.97 1.39 46.47 1.89
921 942 3.297134 ACATCCCATGCGGAAATAACT 57.703 42.857 6.97 0.00 46.47 2.24
922 943 3.214328 ACATCCCATGCGGAAATAACTC 58.786 45.455 6.97 0.00 46.47 3.01
923 944 2.341846 TCCCATGCGGAAATAACTCC 57.658 50.000 0.84 0.00 37.88 3.85
924 945 1.843851 TCCCATGCGGAAATAACTCCT 59.156 47.619 0.84 0.00 37.88 3.69
925 946 2.241176 TCCCATGCGGAAATAACTCCTT 59.759 45.455 0.84 0.00 37.88 3.36
926 947 3.023832 CCCATGCGGAAATAACTCCTTT 58.976 45.455 0.00 0.00 32.82 3.11
927 948 3.447229 CCCATGCGGAAATAACTCCTTTT 59.553 43.478 0.00 0.00 32.82 2.27
928 949 4.081697 CCCATGCGGAAATAACTCCTTTTT 60.082 41.667 0.00 0.00 32.82 1.94
949 970 5.585820 TTTTTAGGGGATGCGGAAATAAC 57.414 39.130 0.00 0.00 0.00 1.89
950 971 4.513406 TTTAGGGGATGCGGAAATAACT 57.487 40.909 0.00 0.00 0.00 2.24
951 972 2.640316 AGGGGATGCGGAAATAACTC 57.360 50.000 0.00 0.00 0.00 3.01
952 973 1.143073 AGGGGATGCGGAAATAACTCC 59.857 52.381 0.00 0.00 0.00 3.85
953 974 1.143073 GGGGATGCGGAAATAACTCCT 59.857 52.381 0.00 0.00 32.82 3.69
954 975 2.222027 GGGATGCGGAAATAACTCCTG 58.778 52.381 0.00 0.00 32.82 3.86
972 993 3.515502 TCCTGAGGACGAATTTGATGTCT 59.484 43.478 0.00 0.00 33.21 3.41
973 994 4.020218 TCCTGAGGACGAATTTGATGTCTT 60.020 41.667 0.00 0.00 33.21 3.01
974 995 4.093998 CCTGAGGACGAATTTGATGTCTTG 59.906 45.833 0.00 0.00 33.21 3.02
975 996 4.641396 TGAGGACGAATTTGATGTCTTGT 58.359 39.130 0.00 0.00 33.21 3.16
976 997 5.063204 TGAGGACGAATTTGATGTCTTGTT 58.937 37.500 0.00 0.00 33.21 2.83
1021 1048 1.197910 GCGTTATCGTCTTCCTTCCG 58.802 55.000 0.00 0.00 39.49 4.30
1022 1049 1.197910 CGTTATCGTCTTCCTTCCGC 58.802 55.000 0.00 0.00 0.00 5.54
1023 1050 1.568606 GTTATCGTCTTCCTTCCGCC 58.431 55.000 0.00 0.00 0.00 6.13
1024 1051 0.101759 TTATCGTCTTCCTTCCGCCG 59.898 55.000 0.00 0.00 0.00 6.46
1339 1373 1.220749 GACGCCTTGCCAGACCATA 59.779 57.895 0.00 0.00 0.00 2.74
1352 1386 5.130311 TGCCAGACCATATGTGTATGTACTT 59.870 40.000 14.04 0.00 36.72 2.24
1376 1410 3.187700 GCCGTGATCGTCTTAATCAGTT 58.812 45.455 0.00 0.00 33.94 3.16
1527 1561 1.308069 CCATCAACCACCTCAAGCCG 61.308 60.000 0.00 0.00 0.00 5.52
1626 1662 2.785562 TCCAACACAACTTTATCCCCG 58.214 47.619 0.00 0.00 0.00 5.73
1904 1989 6.869421 AACACATTTCTCTTTTCAAACACG 57.131 33.333 0.00 0.00 0.00 4.49
1922 2010 6.510746 AACACGCTAAAAGAAGAAAAATGC 57.489 33.333 0.00 0.00 0.00 3.56
1958 2046 2.434336 TGACGGATGGGGTCAGATTAAG 59.566 50.000 0.00 0.00 39.36 1.85
2013 2101 4.090498 CACGTATCATGCTGTCGGAATATG 59.910 45.833 0.00 0.00 0.00 1.78
2068 2296 7.119699 ACAATTATAGATGTGCATATGGTTCCG 59.880 37.037 0.00 0.00 0.00 4.30
2069 2297 4.623932 ATAGATGTGCATATGGTTCCGT 57.376 40.909 0.00 0.00 0.00 4.69
2070 2298 3.281727 AGATGTGCATATGGTTCCGTT 57.718 42.857 0.00 0.00 0.00 4.44
2071 2299 3.620488 AGATGTGCATATGGTTCCGTTT 58.380 40.909 0.00 0.00 0.00 3.60
2072 2300 3.627577 AGATGTGCATATGGTTCCGTTTC 59.372 43.478 0.00 0.00 0.00 2.78
2073 2301 2.784347 TGTGCATATGGTTCCGTTTCA 58.216 42.857 4.56 0.00 0.00 2.69
2074 2302 3.149981 TGTGCATATGGTTCCGTTTCAA 58.850 40.909 4.56 0.00 0.00 2.69
2075 2303 3.570125 TGTGCATATGGTTCCGTTTCAAA 59.430 39.130 4.56 0.00 0.00 2.69
2076 2304 4.038042 TGTGCATATGGTTCCGTTTCAAAA 59.962 37.500 4.56 0.00 0.00 2.44
2077 2305 4.985409 GTGCATATGGTTCCGTTTCAAAAA 59.015 37.500 4.56 0.00 0.00 1.94
2101 2329 9.918630 AAAAATAAATAGATGTGCATATGGCTC 57.081 29.630 0.00 0.00 45.15 4.70
2102 2330 7.636150 AATAAATAGATGTGCATATGGCTCC 57.364 36.000 0.00 0.00 45.15 4.70
2157 2385 6.746104 TTCAGTTATTTGCACAATTTGTCG 57.254 33.333 0.00 0.00 0.00 4.35
2163 2391 2.772568 TGCACAATTTGTCGGTCAAG 57.227 45.000 0.00 0.00 37.35 3.02
2168 2396 3.559655 CACAATTTGTCGGTCAAGAGTGA 59.440 43.478 0.00 0.00 36.72 3.41
2184 2412 8.621532 TCAAGAGTGACTGTATTTGCTAAAAT 57.378 30.769 0.00 0.00 39.38 1.82
2185 2413 9.719355 TCAAGAGTGACTGTATTTGCTAAAATA 57.281 29.630 0.00 0.00 37.23 1.40
2303 3118 2.032030 CCTGCTAACCAACTTGTCAACG 60.032 50.000 0.00 0.00 0.00 4.10
2712 6459 9.898152 ATCACTTTTTGGGAAACTAATGAAAAA 57.102 25.926 0.00 0.00 0.00 1.94
2823 6583 9.481340 GAGCCTATTGAAAAAGAAGAAAACATT 57.519 29.630 0.00 0.00 0.00 2.71
2824 6584 9.481340 AGCCTATTGAAAAAGAAGAAAACATTC 57.519 29.630 0.00 0.00 0.00 2.67
2825 6585 9.260002 GCCTATTGAAAAAGAAGAAAACATTCA 57.740 29.630 0.00 0.00 0.00 2.57
2829 6589 9.874205 ATTGAAAAAGAAGAAAACATTCAGTCA 57.126 25.926 0.00 0.00 0.00 3.41
2830 6590 9.703892 TTGAAAAAGAAGAAAACATTCAGTCAA 57.296 25.926 0.00 0.00 0.00 3.18
2831 6591 9.703892 TGAAAAAGAAGAAAACATTCAGTCAAA 57.296 25.926 0.00 0.00 0.00 2.69
3033 6824 6.472887 AGTTTTGACCGGAAGAAATGATAGA 58.527 36.000 9.46 0.00 0.00 1.98
3334 8480 9.566530 TTGGACATACGATCATGTTAAAATTTG 57.433 29.630 0.63 0.00 39.25 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.280797 GCACCTCCGTGTTCAGCA 60.281 61.111 0.00 0.00 42.39 4.41
1 2 3.050275 GGCACCTCCGTGTTCAGC 61.050 66.667 0.00 0.00 42.39 4.26
2 3 0.249120 TATGGCACCTCCGTGTTCAG 59.751 55.000 0.00 0.00 42.39 3.02
3 4 0.036765 GTATGGCACCTCCGTGTTCA 60.037 55.000 0.00 0.00 42.39 3.18
4 5 1.082117 CGTATGGCACCTCCGTGTTC 61.082 60.000 0.00 0.00 42.39 3.18
5 6 1.079405 CGTATGGCACCTCCGTGTT 60.079 57.895 0.00 0.00 42.39 3.32
6 7 1.823169 AACGTATGGCACCTCCGTGT 61.823 55.000 0.00 0.00 42.39 4.49
7 8 1.079405 AACGTATGGCACCTCCGTG 60.079 57.895 0.00 0.00 43.35 4.94
8 9 1.217244 GAACGTATGGCACCTCCGT 59.783 57.895 0.00 0.00 37.80 4.69
9 10 1.876714 CGAACGTATGGCACCTCCG 60.877 63.158 0.00 0.00 37.80 4.63
10 11 1.520787 CCGAACGTATGGCACCTCC 60.521 63.158 0.00 0.00 0.00 4.30
11 12 1.082117 CACCGAACGTATGGCACCTC 61.082 60.000 5.93 0.00 0.00 3.85
12 13 1.079405 CACCGAACGTATGGCACCT 60.079 57.895 5.93 0.00 0.00 4.00
13 14 0.952010 AACACCGAACGTATGGCACC 60.952 55.000 5.93 0.00 0.00 5.01
14 15 0.869730 AAACACCGAACGTATGGCAC 59.130 50.000 5.93 0.00 0.00 5.01
15 16 0.869068 CAAACACCGAACGTATGGCA 59.131 50.000 5.93 0.00 0.00 4.92
16 17 0.167251 CCAAACACCGAACGTATGGC 59.833 55.000 5.93 0.00 0.00 4.40
17 18 1.798283 TCCAAACACCGAACGTATGG 58.202 50.000 4.54 4.54 0.00 2.74
18 19 3.554324 CCTATCCAAACACCGAACGTATG 59.446 47.826 0.00 0.00 0.00 2.39
19 20 3.196254 ACCTATCCAAACACCGAACGTAT 59.804 43.478 0.00 0.00 0.00 3.06
20 21 2.562298 ACCTATCCAAACACCGAACGTA 59.438 45.455 0.00 0.00 0.00 3.57
21 22 1.345415 ACCTATCCAAACACCGAACGT 59.655 47.619 0.00 0.00 0.00 3.99
22 23 2.088950 ACCTATCCAAACACCGAACG 57.911 50.000 0.00 0.00 0.00 3.95
23 24 2.486592 CCAACCTATCCAAACACCGAAC 59.513 50.000 0.00 0.00 0.00 3.95
24 25 2.372504 TCCAACCTATCCAAACACCGAA 59.627 45.455 0.00 0.00 0.00 4.30
25 26 1.979308 TCCAACCTATCCAAACACCGA 59.021 47.619 0.00 0.00 0.00 4.69
26 27 2.483014 TCCAACCTATCCAAACACCG 57.517 50.000 0.00 0.00 0.00 4.94
27 28 2.943033 CGATCCAACCTATCCAAACACC 59.057 50.000 0.00 0.00 0.00 4.16
28 29 3.374058 CACGATCCAACCTATCCAAACAC 59.626 47.826 0.00 0.00 0.00 3.32
29 30 3.262151 TCACGATCCAACCTATCCAAACA 59.738 43.478 0.00 0.00 0.00 2.83
30 31 3.869065 TCACGATCCAACCTATCCAAAC 58.131 45.455 0.00 0.00 0.00 2.93
31 32 4.224147 TCTTCACGATCCAACCTATCCAAA 59.776 41.667 0.00 0.00 0.00 3.28
32 33 3.772572 TCTTCACGATCCAACCTATCCAA 59.227 43.478 0.00 0.00 0.00 3.53
33 34 3.132289 GTCTTCACGATCCAACCTATCCA 59.868 47.826 0.00 0.00 0.00 3.41
34 35 3.718815 GTCTTCACGATCCAACCTATCC 58.281 50.000 0.00 0.00 0.00 2.59
48 49 3.818387 TGATGTAGTCGAACGTCTTCAC 58.182 45.455 10.09 0.00 36.53 3.18
49 50 4.224433 GTTGATGTAGTCGAACGTCTTCA 58.776 43.478 10.09 1.94 36.53 3.02
50 51 3.607209 GGTTGATGTAGTCGAACGTCTTC 59.393 47.826 10.09 4.37 36.53 2.87
51 52 3.572584 GGTTGATGTAGTCGAACGTCTT 58.427 45.455 10.09 0.00 36.53 3.01
52 53 2.413765 CGGTTGATGTAGTCGAACGTCT 60.414 50.000 10.09 0.00 44.71 4.18
53 54 1.909532 CGGTTGATGTAGTCGAACGTC 59.090 52.381 3.01 3.01 44.71 4.34
54 55 1.973138 CGGTTGATGTAGTCGAACGT 58.027 50.000 0.00 0.00 44.71 3.99
56 57 0.638746 CGCGGTTGATGTAGTCGAAC 59.361 55.000 0.00 0.00 0.00 3.95
57 58 0.241749 ACGCGGTTGATGTAGTCGAA 59.758 50.000 12.47 0.00 0.00 3.71
58 59 0.241749 AACGCGGTTGATGTAGTCGA 59.758 50.000 12.47 0.00 0.00 4.20
59 60 1.580704 GTAACGCGGTTGATGTAGTCG 59.419 52.381 12.47 0.00 0.00 4.18
60 61 2.872370 AGTAACGCGGTTGATGTAGTC 58.128 47.619 12.47 0.00 0.00 2.59
61 62 4.439305 TTAGTAACGCGGTTGATGTAGT 57.561 40.909 12.47 0.00 0.00 2.73
62 63 4.622313 TGTTTAGTAACGCGGTTGATGTAG 59.378 41.667 12.47 0.00 37.06 2.74
63 64 4.385447 GTGTTTAGTAACGCGGTTGATGTA 59.615 41.667 12.47 0.00 37.06 2.29
64 65 3.184986 GTGTTTAGTAACGCGGTTGATGT 59.815 43.478 12.47 0.00 37.06 3.06
65 66 3.430895 AGTGTTTAGTAACGCGGTTGATG 59.569 43.478 12.47 0.00 46.77 3.07
66 67 3.656559 AGTGTTTAGTAACGCGGTTGAT 58.343 40.909 12.47 0.00 46.77 2.57
67 68 3.096489 AGTGTTTAGTAACGCGGTTGA 57.904 42.857 12.47 0.00 46.77 3.18
68 69 3.363280 GGAAGTGTTTAGTAACGCGGTTG 60.363 47.826 12.47 0.00 46.77 3.77
69 70 2.802247 GGAAGTGTTTAGTAACGCGGTT 59.198 45.455 12.47 5.03 46.77 4.44
70 71 2.407090 GGAAGTGTTTAGTAACGCGGT 58.593 47.619 12.47 6.42 46.77 5.68
71 72 1.387756 CGGAAGTGTTTAGTAACGCGG 59.612 52.381 12.47 0.00 46.77 6.46
72 73 1.201736 GCGGAAGTGTTTAGTAACGCG 60.202 52.381 3.53 3.53 46.77 6.01
73 74 2.064014 AGCGGAAGTGTTTAGTAACGC 58.936 47.619 0.00 0.00 43.50 4.84
74 75 4.662394 CGAAAGCGGAAGTGTTTAGTAACG 60.662 45.833 0.00 0.00 37.06 3.18
75 76 4.695200 CGAAAGCGGAAGTGTTTAGTAAC 58.305 43.478 0.00 0.00 34.75 2.50
76 77 4.977741 CGAAAGCGGAAGTGTTTAGTAA 57.022 40.909 0.00 0.00 0.00 2.24
90 91 0.460311 ACCCTCATAGACCGAAAGCG 59.540 55.000 0.00 0.00 37.24 4.68
91 92 1.941325 CACCCTCATAGACCGAAAGC 58.059 55.000 0.00 0.00 0.00 3.51
92 93 1.802880 CGCACCCTCATAGACCGAAAG 60.803 57.143 0.00 0.00 0.00 2.62
93 94 0.174845 CGCACCCTCATAGACCGAAA 59.825 55.000 0.00 0.00 0.00 3.46
94 95 0.968901 ACGCACCCTCATAGACCGAA 60.969 55.000 0.00 0.00 0.00 4.30
95 96 1.379443 ACGCACCCTCATAGACCGA 60.379 57.895 0.00 0.00 0.00 4.69
96 97 1.226974 CACGCACCCTCATAGACCG 60.227 63.158 0.00 0.00 0.00 4.79
97 98 1.144057 CCACGCACCCTCATAGACC 59.856 63.158 0.00 0.00 0.00 3.85
98 99 0.179108 GTCCACGCACCCTCATAGAC 60.179 60.000 0.00 0.00 0.00 2.59
99 100 0.613572 TGTCCACGCACCCTCATAGA 60.614 55.000 0.00 0.00 0.00 1.98
100 101 0.460284 GTGTCCACGCACCCTCATAG 60.460 60.000 0.00 0.00 33.53 2.23
101 102 1.188871 TGTGTCCACGCACCCTCATA 61.189 55.000 0.00 0.00 38.52 2.15
102 103 2.347490 GTGTCCACGCACCCTCAT 59.653 61.111 0.00 0.00 33.53 2.90
103 104 3.157949 TGTGTCCACGCACCCTCA 61.158 61.111 0.00 0.00 38.52 3.86
109 110 2.734591 GGAGAGTGTGTCCACGCA 59.265 61.111 12.97 0.00 46.56 5.24
110 111 2.048127 GGGAGAGTGTGTCCACGC 60.048 66.667 2.81 2.81 46.56 5.34
111 112 2.657237 GGGGAGAGTGTGTCCACG 59.343 66.667 0.00 0.00 46.56 4.94
112 113 2.657237 CGGGGAGAGTGTGTCCAC 59.343 66.667 0.00 0.00 42.17 4.02
113 114 3.311110 GCGGGGAGAGTGTGTCCA 61.311 66.667 0.00 0.00 35.57 4.02
114 115 2.584391 AAGCGGGGAGAGTGTGTCC 61.584 63.158 0.00 0.00 0.00 4.02
115 116 1.374758 CAAGCGGGGAGAGTGTGTC 60.375 63.158 0.00 0.00 0.00 3.67
116 117 1.696097 AACAAGCGGGGAGAGTGTGT 61.696 55.000 0.00 0.00 0.00 3.72
117 118 1.071471 AACAAGCGGGGAGAGTGTG 59.929 57.895 0.00 0.00 0.00 3.82
118 119 1.071471 CAACAAGCGGGGAGAGTGT 59.929 57.895 0.00 0.00 0.00 3.55
119 120 0.036010 ATCAACAAGCGGGGAGAGTG 60.036 55.000 0.00 0.00 0.00 3.51
120 121 1.568504 TATCAACAAGCGGGGAGAGT 58.431 50.000 0.00 0.00 0.00 3.24
121 122 2.487934 CATATCAACAAGCGGGGAGAG 58.512 52.381 0.00 0.00 0.00 3.20
122 123 1.475034 GCATATCAACAAGCGGGGAGA 60.475 52.381 0.00 0.00 0.00 3.71
123 124 0.947244 GCATATCAACAAGCGGGGAG 59.053 55.000 0.00 0.00 0.00 4.30
124 125 0.254462 TGCATATCAACAAGCGGGGA 59.746 50.000 0.00 0.00 0.00 4.81
125 126 1.267806 GATGCATATCAACAAGCGGGG 59.732 52.381 0.00 0.00 33.38 5.73
126 127 2.224606 AGATGCATATCAACAAGCGGG 58.775 47.619 0.00 0.00 35.70 6.13
127 128 2.225019 GGAGATGCATATCAACAAGCGG 59.775 50.000 22.04 0.00 35.70 5.52
128 129 3.136763 AGGAGATGCATATCAACAAGCG 58.863 45.455 22.04 0.00 35.70 4.68
129 130 5.545588 TCTAGGAGATGCATATCAACAAGC 58.454 41.667 22.04 4.46 35.70 4.01
130 131 8.747471 TCTATCTAGGAGATGCATATCAACAAG 58.253 37.037 22.04 12.76 35.37 3.16
131 132 8.655935 TCTATCTAGGAGATGCATATCAACAA 57.344 34.615 22.04 5.99 35.37 2.83
132 133 8.835550 ATCTATCTAGGAGATGCATATCAACA 57.164 34.615 22.04 6.18 35.37 3.33
133 134 9.135189 AGATCTATCTAGGAGATGCATATCAAC 57.865 37.037 22.04 6.57 35.37 3.18
134 135 9.712250 AAGATCTATCTAGGAGATGCATATCAA 57.288 33.333 22.04 9.20 35.37 2.57
135 136 9.134055 CAAGATCTATCTAGGAGATGCATATCA 57.866 37.037 22.04 2.64 35.37 2.15
136 137 8.084073 GCAAGATCTATCTAGGAGATGCATATC 58.916 40.741 13.00 13.00 35.37 1.63
137 138 7.255555 CGCAAGATCTATCTAGGAGATGCATAT 60.256 40.741 0.00 0.00 35.65 1.78
138 139 6.039159 CGCAAGATCTATCTAGGAGATGCATA 59.961 42.308 0.00 0.00 35.65 3.14
139 140 5.163530 CGCAAGATCTATCTAGGAGATGCAT 60.164 44.000 0.00 0.00 35.65 3.96
140 141 4.157472 CGCAAGATCTATCTAGGAGATGCA 59.843 45.833 11.48 0.00 35.65 3.96
141 142 4.157656 ACGCAAGATCTATCTAGGAGATGC 59.842 45.833 11.48 9.81 36.70 3.91
142 143 5.414144 TCACGCAAGATCTATCTAGGAGATG 59.586 44.000 11.48 2.82 36.70 2.90
143 144 5.565509 TCACGCAAGATCTATCTAGGAGAT 58.434 41.667 0.00 7.55 38.77 2.75
144 145 4.974399 TCACGCAAGATCTATCTAGGAGA 58.026 43.478 0.00 0.00 43.62 3.71
145 146 5.447144 CGATCACGCAAGATCTATCTAGGAG 60.447 48.000 12.06 0.00 41.74 3.69
146 147 4.393371 CGATCACGCAAGATCTATCTAGGA 59.607 45.833 12.06 0.00 41.74 2.94
147 148 4.155099 ACGATCACGCAAGATCTATCTAGG 59.845 45.833 12.06 0.32 41.74 3.02
148 149 5.289917 ACGATCACGCAAGATCTATCTAG 57.710 43.478 12.06 0.00 41.74 2.43
149 150 5.351740 CCTACGATCACGCAAGATCTATCTA 59.648 44.000 12.06 0.00 41.74 1.98
150 151 4.155099 CCTACGATCACGCAAGATCTATCT 59.845 45.833 12.06 0.00 41.74 1.98
151 152 4.083217 ACCTACGATCACGCAAGATCTATC 60.083 45.833 12.06 0.00 41.74 2.08
152 153 3.821600 ACCTACGATCACGCAAGATCTAT 59.178 43.478 12.06 4.73 41.74 1.98
153 154 3.211865 ACCTACGATCACGCAAGATCTA 58.788 45.455 12.06 4.90 41.74 1.98
154 155 2.025155 ACCTACGATCACGCAAGATCT 58.975 47.619 12.06 0.00 41.74 2.75
155 156 2.493713 ACCTACGATCACGCAAGATC 57.506 50.000 5.52 5.52 43.96 2.75
156 157 4.380841 TTTACCTACGATCACGCAAGAT 57.619 40.909 0.00 0.00 43.96 2.40
157 158 3.853831 TTTACCTACGATCACGCAAGA 57.146 42.857 0.00 0.00 43.96 3.02
158 159 5.464965 AAATTTACCTACGATCACGCAAG 57.535 39.130 0.00 0.00 43.96 4.01
159 160 5.866335 AAAATTTACCTACGATCACGCAA 57.134 34.783 0.00 0.00 43.96 4.85
160 161 5.866335 AAAAATTTACCTACGATCACGCA 57.134 34.783 0.00 0.00 43.96 5.24
179 180 2.478831 GGGAACGCAGCATTTCAAAAA 58.521 42.857 6.17 0.00 0.00 1.94
180 181 1.270041 GGGGAACGCAGCATTTCAAAA 60.270 47.619 6.17 0.00 42.57 2.44
181 182 0.316841 GGGGAACGCAGCATTTCAAA 59.683 50.000 6.17 0.00 42.57 2.69
182 183 1.963679 GGGGAACGCAGCATTTCAA 59.036 52.632 6.17 0.00 42.57 2.69
183 184 3.680156 GGGGAACGCAGCATTTCA 58.320 55.556 6.17 0.00 42.57 2.69
192 193 2.594592 AGTGCTGTTGGGGAACGC 60.595 61.111 0.00 0.00 43.69 4.84
193 194 1.227823 TCAGTGCTGTTGGGGAACG 60.228 57.895 0.00 0.00 0.00 3.95
194 195 0.179018 AGTCAGTGCTGTTGGGGAAC 60.179 55.000 0.00 0.00 0.00 3.62
195 196 1.429930 TAGTCAGTGCTGTTGGGGAA 58.570 50.000 0.00 0.00 0.00 3.97
196 197 1.278985 CATAGTCAGTGCTGTTGGGGA 59.721 52.381 0.00 0.00 0.00 4.81
197 198 1.278985 TCATAGTCAGTGCTGTTGGGG 59.721 52.381 0.00 0.00 0.00 4.96
198 199 2.625737 CTCATAGTCAGTGCTGTTGGG 58.374 52.381 0.00 0.00 0.00 4.12
199 200 2.005451 GCTCATAGTCAGTGCTGTTGG 58.995 52.381 0.00 0.00 0.00 3.77
200 201 2.414481 GTGCTCATAGTCAGTGCTGTTG 59.586 50.000 0.00 0.00 0.00 3.33
201 202 2.301296 AGTGCTCATAGTCAGTGCTGTT 59.699 45.455 0.00 0.00 0.00 3.16
202 203 1.898472 AGTGCTCATAGTCAGTGCTGT 59.102 47.619 0.00 0.00 0.00 4.40
203 204 2.538437 GAGTGCTCATAGTCAGTGCTG 58.462 52.381 0.00 0.00 0.00 4.41
204 205 1.480137 GGAGTGCTCATAGTCAGTGCT 59.520 52.381 1.41 0.00 0.00 4.40
205 206 1.205655 TGGAGTGCTCATAGTCAGTGC 59.794 52.381 1.41 0.00 0.00 4.40
206 207 2.159128 CCTGGAGTGCTCATAGTCAGTG 60.159 54.545 1.41 0.00 0.00 3.66
207 208 2.106566 CCTGGAGTGCTCATAGTCAGT 58.893 52.381 1.41 0.00 0.00 3.41
208 209 2.106566 ACCTGGAGTGCTCATAGTCAG 58.893 52.381 0.00 0.00 0.00 3.51
209 210 2.238084 ACCTGGAGTGCTCATAGTCA 57.762 50.000 0.00 0.00 0.00 3.41
210 211 3.702045 AGTAACCTGGAGTGCTCATAGTC 59.298 47.826 0.00 0.00 0.00 2.59
211 212 3.714144 AGTAACCTGGAGTGCTCATAGT 58.286 45.455 0.00 0.00 0.00 2.12
212 213 4.890581 AGTAGTAACCTGGAGTGCTCATAG 59.109 45.833 0.00 0.00 0.00 2.23
213 214 4.868268 AGTAGTAACCTGGAGTGCTCATA 58.132 43.478 0.00 0.00 0.00 2.15
214 215 3.702045 GAGTAGTAACCTGGAGTGCTCAT 59.298 47.826 0.00 0.00 31.42 2.90
215 216 3.090037 GAGTAGTAACCTGGAGTGCTCA 58.910 50.000 0.00 0.00 31.42 4.26
216 217 2.427812 GGAGTAGTAACCTGGAGTGCTC 59.572 54.545 0.00 0.05 0.00 4.26
217 218 2.458620 GGAGTAGTAACCTGGAGTGCT 58.541 52.381 0.00 0.00 0.00 4.40
218 219 1.481363 GGGAGTAGTAACCTGGAGTGC 59.519 57.143 0.00 0.00 0.00 4.40
219 220 3.025262 GAGGGAGTAGTAACCTGGAGTG 58.975 54.545 0.00 0.00 34.02 3.51
220 221 2.024177 GGAGGGAGTAGTAACCTGGAGT 60.024 54.545 0.00 0.00 34.02 3.85
221 222 2.668625 GGAGGGAGTAGTAACCTGGAG 58.331 57.143 0.00 0.00 34.02 3.86
222 223 1.064166 CGGAGGGAGTAGTAACCTGGA 60.064 57.143 0.00 0.00 34.02 3.86
223 224 1.341778 ACGGAGGGAGTAGTAACCTGG 60.342 57.143 0.00 0.00 34.02 4.45
224 225 2.022934 GACGGAGGGAGTAGTAACCTG 58.977 57.143 0.00 0.00 34.02 4.00
225 226 1.064091 GGACGGAGGGAGTAGTAACCT 60.064 57.143 0.00 0.00 37.31 3.50
226 227 1.397672 GGACGGAGGGAGTAGTAACC 58.602 60.000 0.00 0.00 0.00 2.85
227 228 1.341383 TGGGACGGAGGGAGTAGTAAC 60.341 57.143 0.00 0.00 0.00 2.50
228 229 1.002069 TGGGACGGAGGGAGTAGTAA 58.998 55.000 0.00 0.00 0.00 2.24
229 230 1.002069 TTGGGACGGAGGGAGTAGTA 58.998 55.000 0.00 0.00 0.00 1.82
230 231 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.000 0.00 0.00 0.00 2.73
231 232 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
232 233 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
233 234 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
234 235 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
235 236 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
236 237 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
237 238 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
238 239 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
239 240 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
240 241 5.106436 GGTTAAGACACTTATTTTGGGACGG 60.106 44.000 0.00 0.00 0.00 4.79
241 242 5.704053 AGGTTAAGACACTTATTTTGGGACG 59.296 40.000 0.00 0.00 0.00 4.79
242 243 7.520451 AAGGTTAAGACACTTATTTTGGGAC 57.480 36.000 0.00 0.00 0.00 4.46
243 244 9.816787 ATTAAGGTTAAGACACTTATTTTGGGA 57.183 29.630 0.00 0.00 0.00 4.37
289 290 9.528018 CCAAAATAAGTGTCACAACTTTGTATT 57.472 29.630 5.62 0.00 40.77 1.89
290 291 8.908903 TCCAAAATAAGTGTCACAACTTTGTAT 58.091 29.630 5.62 0.00 40.77 2.29
291 292 8.282455 TCCAAAATAAGTGTCACAACTTTGTA 57.718 30.769 5.62 0.00 40.77 2.41
292 293 7.164230 TCCAAAATAAGTGTCACAACTTTGT 57.836 32.000 5.62 0.00 40.77 2.83
293 294 7.253618 CGTTCCAAAATAAGTGTCACAACTTTG 60.254 37.037 5.62 8.79 40.77 2.77
294 295 6.750039 CGTTCCAAAATAAGTGTCACAACTTT 59.250 34.615 5.62 0.00 40.77 2.66
295 296 6.262601 CGTTCCAAAATAAGTGTCACAACTT 58.737 36.000 5.62 0.00 42.89 2.66
296 297 5.220970 CCGTTCCAAAATAAGTGTCACAACT 60.221 40.000 5.62 0.00 0.00 3.16
297 298 4.973663 CCGTTCCAAAATAAGTGTCACAAC 59.026 41.667 5.62 0.00 0.00 3.32
298 299 4.882427 TCCGTTCCAAAATAAGTGTCACAA 59.118 37.500 5.62 0.00 0.00 3.33
299 300 4.452825 TCCGTTCCAAAATAAGTGTCACA 58.547 39.130 5.62 0.00 0.00 3.58
300 301 4.753107 TCTCCGTTCCAAAATAAGTGTCAC 59.247 41.667 0.00 0.00 0.00 3.67
301 302 4.963373 TCTCCGTTCCAAAATAAGTGTCA 58.037 39.130 0.00 0.00 0.00 3.58
302 303 5.235516 TCTCTCCGTTCCAAAATAAGTGTC 58.764 41.667 0.00 0.00 0.00 3.67
303 304 5.221661 ACTCTCTCCGTTCCAAAATAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
304 305 5.238583 ACTCTCTCCGTTCCAAAATAAGTG 58.761 41.667 0.00 0.00 0.00 3.16
305 306 5.485209 ACTCTCTCCGTTCCAAAATAAGT 57.515 39.130 0.00 0.00 0.00 2.24
306 307 6.631962 AGTACTCTCTCCGTTCCAAAATAAG 58.368 40.000 0.00 0.00 0.00 1.73
307 308 6.600882 AGTACTCTCTCCGTTCCAAAATAA 57.399 37.500 0.00 0.00 0.00 1.40
308 309 6.888632 AGTAGTACTCTCTCCGTTCCAAAATA 59.111 38.462 0.00 0.00 0.00 1.40
309 310 5.715753 AGTAGTACTCTCTCCGTTCCAAAAT 59.284 40.000 0.00 0.00 0.00 1.82
310 311 5.075493 AGTAGTACTCTCTCCGTTCCAAAA 58.925 41.667 0.00 0.00 0.00 2.44
311 312 4.660168 AGTAGTACTCTCTCCGTTCCAAA 58.340 43.478 0.00 0.00 0.00 3.28
312 313 4.298103 AGTAGTACTCTCTCCGTTCCAA 57.702 45.455 0.00 0.00 0.00 3.53
313 314 3.996921 AGTAGTACTCTCTCCGTTCCA 57.003 47.619 0.00 0.00 0.00 3.53
314 315 5.641783 AAAAGTAGTACTCTCTCCGTTCC 57.358 43.478 2.58 0.00 0.00 3.62
339 340 7.685849 AAAACTTAGTGATGGCCCTACTATA 57.314 36.000 0.00 0.00 0.00 1.31
411 412 7.073854 AGCCTAGATAACCCTACTGTAATTCA 58.926 38.462 0.00 0.00 0.00 2.57
420 421 6.325804 TGGTTCTTAAGCCTAGATAACCCTAC 59.674 42.308 14.20 0.00 0.00 3.18
427 428 6.839134 TCATGTCTGGTTCTTAAGCCTAGATA 59.161 38.462 9.94 8.45 0.00 1.98
432 433 3.617531 CGTCATGTCTGGTTCTTAAGCCT 60.618 47.826 0.00 0.00 0.00 4.58
444 445 1.511850 TCACAAAGGCGTCATGTCTG 58.488 50.000 0.00 0.00 28.45 3.51
454 455 3.316308 TGCTCTTTCTCTTTCACAAAGGC 59.684 43.478 0.00 0.00 39.01 4.35
457 458 4.581824 AGCATGCTCTTTCTCTTTCACAAA 59.418 37.500 16.30 0.00 0.00 2.83
474 475 2.620115 TGCATTCCTTAGCTAAGCATGC 59.380 45.455 35.16 35.16 42.64 4.06
479 480 4.414337 AGAGGTGCATTCCTTAGCTAAG 57.586 45.455 24.11 24.11 38.02 2.18
520 521 0.830648 TTCCTGCTCTATGGTTCCCG 59.169 55.000 0.00 0.00 0.00 5.14
559 560 4.813161 CCACCATCATCACAGAGATACAAC 59.187 45.833 0.00 0.00 34.43 3.32
565 566 2.259917 ACACCACCATCATCACAGAGA 58.740 47.619 0.00 0.00 0.00 3.10
570 571 3.305335 GGAAACAACACCACCATCATCAC 60.305 47.826 0.00 0.00 0.00 3.06
594 595 5.937540 TGATTTGAGTAAAGGCTCGAATGAA 59.062 36.000 11.86 0.63 44.99 2.57
595 596 5.487433 TGATTTGAGTAAAGGCTCGAATGA 58.513 37.500 11.86 3.00 44.99 2.57
596 597 5.352569 ACTGATTTGAGTAAAGGCTCGAATG 59.647 40.000 11.86 3.65 44.99 2.67
597 598 5.491982 ACTGATTTGAGTAAAGGCTCGAAT 58.508 37.500 7.94 7.94 46.63 3.34
612 613 8.761575 ATTGCAATAGTTTGGTTACTGATTTG 57.238 30.769 11.02 0.00 33.22 2.32
634 635 3.064958 CACATCAAGCTAGCCACTGATTG 59.935 47.826 17.53 12.18 0.00 2.67
638 639 2.277969 CTCACATCAAGCTAGCCACTG 58.722 52.381 12.13 6.92 0.00 3.66
650 651 4.872124 CGGATCTCAATTTGACTCACATCA 59.128 41.667 0.00 0.00 0.00 3.07
658 659 5.593010 AGTAGTAGCGGATCTCAATTTGAC 58.407 41.667 0.00 0.00 0.00 3.18
661 662 5.834204 AGGTAGTAGTAGCGGATCTCAATTT 59.166 40.000 1.22 0.00 0.00 1.82
676 677 7.117331 AGTATCCCATATTCCAGGTAGTAGT 57.883 40.000 0.00 0.00 0.00 2.73
677 678 7.579723 GCAAGTATCCCATATTCCAGGTAGTAG 60.580 44.444 0.00 0.00 0.00 2.57
692 693 1.957177 TGTTTTTGCGCAAGTATCCCA 59.043 42.857 23.68 12.10 41.68 4.37
711 712 3.306917 TTGCTCCAATGTGCATTCTTG 57.693 42.857 0.00 0.00 40.38 3.02
728 729 2.353109 GCTGTCTCCCATTTCCTTTTGC 60.353 50.000 0.00 0.00 0.00 3.68
771 772 5.879763 TGATTGGACCTCTCATTCTCAAAA 58.120 37.500 0.00 0.00 0.00 2.44
775 776 5.096443 AGTTGATTGGACCTCTCATTCTC 57.904 43.478 0.00 0.00 0.00 2.87
776 777 5.511386 AAGTTGATTGGACCTCTCATTCT 57.489 39.130 0.00 0.00 0.00 2.40
777 778 5.942826 AGAAAGTTGATTGGACCTCTCATTC 59.057 40.000 0.00 0.00 0.00 2.67
781 794 6.000840 AGAAAGAAAGTTGATTGGACCTCTC 58.999 40.000 0.00 0.00 0.00 3.20
798 811 6.210796 TGAATCGTAGACGTTGAAGAAAGAA 58.789 36.000 1.46 0.00 42.51 2.52
856 877 4.740822 AGCGGAATGGTGTGGGCC 62.741 66.667 0.00 0.00 0.00 5.80
859 880 1.176527 AAATCAGCGGAATGGTGTGG 58.823 50.000 0.00 0.00 46.24 4.17
864 885 0.819582 AGGCAAAATCAGCGGAATGG 59.180 50.000 0.00 0.00 0.00 3.16
865 886 3.781079 TTAGGCAAAATCAGCGGAATG 57.219 42.857 0.00 0.00 0.00 2.67
866 887 6.463995 TTTATTAGGCAAAATCAGCGGAAT 57.536 33.333 0.00 0.00 0.00 3.01
867 888 5.906113 TTTATTAGGCAAAATCAGCGGAA 57.094 34.783 0.00 0.00 0.00 4.30
868 889 5.906113 TTTTATTAGGCAAAATCAGCGGA 57.094 34.783 0.00 0.00 0.00 5.54
890 911 4.057432 CGCATGGGATGTTTCTTGTTTTT 58.943 39.130 3.11 0.00 0.00 1.94
891 912 3.554752 CCGCATGGGATGTTTCTTGTTTT 60.555 43.478 12.02 0.00 38.47 2.43
892 913 2.029110 CCGCATGGGATGTTTCTTGTTT 60.029 45.455 12.02 0.00 38.47 2.83
893 914 1.545582 CCGCATGGGATGTTTCTTGTT 59.454 47.619 12.02 0.00 38.47 2.83
894 915 1.176527 CCGCATGGGATGTTTCTTGT 58.823 50.000 12.02 0.00 38.47 3.16
895 916 1.462616 TCCGCATGGGATGTTTCTTG 58.537 50.000 12.02 0.00 40.94 3.02
896 917 2.214376 TTCCGCATGGGATGTTTCTT 57.786 45.000 12.02 0.00 46.62 2.52
897 918 2.214376 TTTCCGCATGGGATGTTTCT 57.786 45.000 12.02 0.00 46.62 2.52
898 919 4.097892 AGTTATTTCCGCATGGGATGTTTC 59.902 41.667 12.02 0.58 46.62 2.78
899 920 4.023291 AGTTATTTCCGCATGGGATGTTT 58.977 39.130 12.02 0.00 46.62 2.83
900 921 3.631250 AGTTATTTCCGCATGGGATGTT 58.369 40.909 12.02 0.00 46.62 2.71
901 922 3.214328 GAGTTATTTCCGCATGGGATGT 58.786 45.455 12.02 2.86 46.62 3.06
902 923 2.554032 GGAGTTATTTCCGCATGGGATG 59.446 50.000 12.02 0.00 46.62 3.51
903 924 2.443255 AGGAGTTATTTCCGCATGGGAT 59.557 45.455 12.02 0.00 46.62 3.85
904 925 1.843851 AGGAGTTATTTCCGCATGGGA 59.156 47.619 12.02 5.03 45.40 4.37
905 926 2.348411 AGGAGTTATTTCCGCATGGG 57.652 50.000 2.06 2.06 42.29 4.00
906 927 4.718940 AAAAGGAGTTATTTCCGCATGG 57.281 40.909 0.00 0.00 42.29 3.66
927 948 5.265989 AGTTATTTCCGCATCCCCTAAAAA 58.734 37.500 0.00 0.00 0.00 1.94
928 949 4.862371 AGTTATTTCCGCATCCCCTAAAA 58.138 39.130 0.00 0.00 0.00 1.52
929 950 4.457466 GAGTTATTTCCGCATCCCCTAAA 58.543 43.478 0.00 0.00 0.00 1.85
930 951 3.181448 GGAGTTATTTCCGCATCCCCTAA 60.181 47.826 0.00 0.00 0.00 2.69
931 952 2.370849 GGAGTTATTTCCGCATCCCCTA 59.629 50.000 0.00 0.00 0.00 3.53
932 953 1.143073 GGAGTTATTTCCGCATCCCCT 59.857 52.381 0.00 0.00 0.00 4.79
933 954 1.143073 AGGAGTTATTTCCGCATCCCC 59.857 52.381 0.00 0.00 42.29 4.81
934 955 2.158813 TCAGGAGTTATTTCCGCATCCC 60.159 50.000 0.00 0.00 42.29 3.85
935 956 3.134458 CTCAGGAGTTATTTCCGCATCC 58.866 50.000 0.00 0.00 42.29 3.51
936 957 3.134458 CCTCAGGAGTTATTTCCGCATC 58.866 50.000 0.00 0.00 42.29 3.91
937 958 2.771943 TCCTCAGGAGTTATTTCCGCAT 59.228 45.455 0.00 0.00 42.29 4.73
938 959 2.093658 GTCCTCAGGAGTTATTTCCGCA 60.094 50.000 0.00 0.00 42.29 5.69
939 960 2.552031 GTCCTCAGGAGTTATTTCCGC 58.448 52.381 0.00 0.00 42.29 5.54
940 961 2.426024 TCGTCCTCAGGAGTTATTTCCG 59.574 50.000 0.00 0.00 42.29 4.30
941 962 4.467198 TTCGTCCTCAGGAGTTATTTCC 57.533 45.455 0.00 0.00 37.52 3.13
942 963 6.594159 TCAAATTCGTCCTCAGGAGTTATTTC 59.406 38.462 0.00 0.00 29.39 2.17
943 964 6.472887 TCAAATTCGTCCTCAGGAGTTATTT 58.527 36.000 0.00 0.00 29.39 1.40
944 965 6.049955 TCAAATTCGTCCTCAGGAGTTATT 57.950 37.500 0.00 0.00 29.39 1.40
945 966 5.677319 TCAAATTCGTCCTCAGGAGTTAT 57.323 39.130 0.00 0.00 29.39 1.89
946 967 5.046591 ACATCAAATTCGTCCTCAGGAGTTA 60.047 40.000 0.00 0.00 29.39 2.24
947 968 4.256920 CATCAAATTCGTCCTCAGGAGTT 58.743 43.478 0.00 0.00 29.39 3.01
948 969 3.261897 ACATCAAATTCGTCCTCAGGAGT 59.738 43.478 0.00 0.00 29.39 3.85
949 970 3.866651 ACATCAAATTCGTCCTCAGGAG 58.133 45.455 0.00 0.00 29.39 3.69
950 971 3.515502 AGACATCAAATTCGTCCTCAGGA 59.484 43.478 0.00 0.00 0.00 3.86
951 972 3.866651 AGACATCAAATTCGTCCTCAGG 58.133 45.455 0.00 0.00 0.00 3.86
952 973 4.692625 ACAAGACATCAAATTCGTCCTCAG 59.307 41.667 0.00 0.00 0.00 3.35
953 974 4.641396 ACAAGACATCAAATTCGTCCTCA 58.359 39.130 0.00 0.00 0.00 3.86
954 975 5.613358 AACAAGACATCAAATTCGTCCTC 57.387 39.130 0.00 0.00 0.00 3.71
1002 1029 1.197910 CGGAAGGAAGACGATAACGC 58.802 55.000 0.00 0.00 43.96 4.84
1024 1051 3.182572 CAGCAGATATAAAGACGCGGAAC 59.817 47.826 12.47 0.93 0.00 3.62
1322 1356 0.464373 CATATGGTCTGGCAAGGCGT 60.464 55.000 0.00 0.00 0.00 5.68
1325 1359 2.425143 ACACATATGGTCTGGCAAGG 57.575 50.000 7.80 0.00 0.00 3.61
1339 1373 1.286501 CGGCGCAAGTACATACACAT 58.713 50.000 10.83 0.00 41.68 3.21
1626 1662 1.534729 AGGGGAATTTTGTCTCGTGC 58.465 50.000 0.00 0.00 0.00 5.34
1672 1733 6.135290 TGATCTTTTATTTTGGGCGATGAG 57.865 37.500 0.00 0.00 0.00 2.90
1904 1989 5.060200 CGCAGAGCATTTTTCTTCTTTTAGC 59.940 40.000 0.00 0.00 0.00 3.09
1922 2010 0.162507 CGTCACTTTCTTGCGCAGAG 59.837 55.000 11.31 11.60 31.12 3.35
1958 2046 2.098117 GGTTAATCATGGACTGCTGCAC 59.902 50.000 0.00 0.00 0.00 4.57
2013 2101 5.523916 TGAGTTCAGTGAGTCTTAACAAAGC 59.476 40.000 0.00 0.00 33.97 3.51
2075 2303 9.918630 GAGCCATATGCACATCTATTTATTTTT 57.081 29.630 0.00 0.00 44.83 1.94
2076 2304 8.526147 GGAGCCATATGCACATCTATTTATTTT 58.474 33.333 0.00 0.00 44.83 1.82
2077 2305 7.892241 AGGAGCCATATGCACATCTATTTATTT 59.108 33.333 0.00 0.00 44.83 1.40
2078 2306 7.408543 AGGAGCCATATGCACATCTATTTATT 58.591 34.615 0.00 0.00 44.83 1.40
2079 2307 6.966751 AGGAGCCATATGCACATCTATTTAT 58.033 36.000 0.00 0.00 44.83 1.40
2080 2308 6.378661 AGGAGCCATATGCACATCTATTTA 57.621 37.500 0.00 0.00 44.83 1.40
2081 2309 5.251764 GAGGAGCCATATGCACATCTATTT 58.748 41.667 0.00 0.00 44.83 1.40
2082 2310 4.841422 GAGGAGCCATATGCACATCTATT 58.159 43.478 0.00 0.00 44.83 1.73
2083 2311 4.484537 GAGGAGCCATATGCACATCTAT 57.515 45.455 0.00 0.00 44.83 1.98
2084 2312 3.969287 GAGGAGCCATATGCACATCTA 57.031 47.619 0.00 0.00 44.83 1.98
2085 2313 2.336891 AGAGGAGCCATATGCACATCT 58.663 47.619 0.00 2.04 44.93 2.90
2086 2314 2.855209 AGAGGAGCCATATGCACATC 57.145 50.000 0.00 0.00 44.83 3.06
2087 2315 2.709934 AGAAGAGGAGCCATATGCACAT 59.290 45.455 0.00 0.00 44.83 3.21
2088 2316 2.121948 AGAAGAGGAGCCATATGCACA 58.878 47.619 0.00 0.00 44.83 4.57
2089 2317 2.926778 AGAAGAGGAGCCATATGCAC 57.073 50.000 0.00 0.00 44.83 4.57
2090 2318 6.881067 AATATAGAAGAGGAGCCATATGCA 57.119 37.500 0.00 0.00 44.83 3.96
2091 2319 7.281999 GGAAAATATAGAAGAGGAGCCATATGC 59.718 40.741 0.00 0.00 41.71 3.14
2092 2320 8.547173 AGGAAAATATAGAAGAGGAGCCATATG 58.453 37.037 0.00 0.00 0.00 1.78
2093 2321 8.692682 AGGAAAATATAGAAGAGGAGCCATAT 57.307 34.615 0.00 0.00 0.00 1.78
2094 2322 8.378565 CAAGGAAAATATAGAAGAGGAGCCATA 58.621 37.037 0.00 0.00 0.00 2.74
2095 2323 7.147230 ACAAGGAAAATATAGAAGAGGAGCCAT 60.147 37.037 0.00 0.00 0.00 4.40
2096 2324 6.158695 ACAAGGAAAATATAGAAGAGGAGCCA 59.841 38.462 0.00 0.00 0.00 4.75
2097 2325 6.596621 ACAAGGAAAATATAGAAGAGGAGCC 58.403 40.000 0.00 0.00 0.00 4.70
2098 2326 8.512966 AAACAAGGAAAATATAGAAGAGGAGC 57.487 34.615 0.00 0.00 0.00 4.70
2099 2327 9.898152 AGAAACAAGGAAAATATAGAAGAGGAG 57.102 33.333 0.00 0.00 0.00 3.69
2168 2396 9.638239 CACCATGTTTATTTTAGCAAATACAGT 57.362 29.630 0.00 0.00 35.05 3.55
2184 2412 5.241403 ACCTGTCAGATTCACCATGTTTA 57.759 39.130 0.00 0.00 0.00 2.01
2185 2413 4.104383 ACCTGTCAGATTCACCATGTTT 57.896 40.909 0.00 0.00 0.00 2.83
2186 2414 3.795688 ACCTGTCAGATTCACCATGTT 57.204 42.857 0.00 0.00 0.00 2.71
2187 2415 3.795688 AACCTGTCAGATTCACCATGT 57.204 42.857 0.00 0.00 0.00 3.21
2188 2416 3.192001 CCAAACCTGTCAGATTCACCATG 59.808 47.826 0.00 0.00 0.00 3.66
2303 3118 2.416680 AGCTCTTCATTTCCTCTGGC 57.583 50.000 0.00 0.00 0.00 4.85
2432 6153 7.876936 ATTGCAAGTGATACATTCTTGATCT 57.123 32.000 4.94 0.00 40.35 2.75
2832 6592 8.243426 GGCAAATGTTTTCTTCCTTTTCTTTTT 58.757 29.630 0.00 0.00 0.00 1.94
2833 6593 7.392953 TGGCAAATGTTTTCTTCCTTTTCTTTT 59.607 29.630 0.00 0.00 0.00 2.27
2834 6594 6.883756 TGGCAAATGTTTTCTTCCTTTTCTTT 59.116 30.769 0.00 0.00 0.00 2.52
2835 6595 6.413892 TGGCAAATGTTTTCTTCCTTTTCTT 58.586 32.000 0.00 0.00 0.00 2.52
2836 6596 5.988287 TGGCAAATGTTTTCTTCCTTTTCT 58.012 33.333 0.00 0.00 0.00 2.52
2837 6597 6.866010 ATGGCAAATGTTTTCTTCCTTTTC 57.134 33.333 0.00 0.00 0.00 2.29
2838 6598 7.056006 AGAATGGCAAATGTTTTCTTCCTTTT 58.944 30.769 0.00 0.00 0.00 2.27
2839 6599 6.594744 AGAATGGCAAATGTTTTCTTCCTTT 58.405 32.000 0.00 0.00 0.00 3.11
2840 6600 6.178607 AGAATGGCAAATGTTTTCTTCCTT 57.821 33.333 0.00 0.00 0.00 3.36
2841 6601 5.813513 AGAATGGCAAATGTTTTCTTCCT 57.186 34.783 0.00 0.00 0.00 3.36
2842 6602 5.572896 CGTAGAATGGCAAATGTTTTCTTCC 59.427 40.000 4.30 0.00 0.00 3.46
2843 6603 6.378582 TCGTAGAATGGCAAATGTTTTCTTC 58.621 36.000 4.30 0.00 0.00 2.87
2844 6604 6.325919 TCGTAGAATGGCAAATGTTTTCTT 57.674 33.333 4.30 0.00 0.00 2.52
2845 6605 5.957842 TCGTAGAATGGCAAATGTTTTCT 57.042 34.783 0.00 0.00 0.00 2.52
2846 6606 7.581011 AATTCGTAGAATGGCAAATGTTTTC 57.419 32.000 0.00 0.00 45.90 2.29
2847 6607 8.519526 TCTAATTCGTAGAATGGCAAATGTTTT 58.480 29.630 0.00 0.00 45.90 2.43
2848 6608 8.050778 TCTAATTCGTAGAATGGCAAATGTTT 57.949 30.769 0.00 0.00 45.90 2.83
2849 6609 7.624360 TCTAATTCGTAGAATGGCAAATGTT 57.376 32.000 0.00 0.00 45.90 2.71
2850 6610 7.624360 TTCTAATTCGTAGAATGGCAAATGT 57.376 32.000 0.00 0.00 42.74 2.71
2851 6611 9.173939 GATTTCTAATTCGTAGAATGGCAAATG 57.826 33.333 0.00 0.00 46.07 2.32
2852 6612 8.902806 TGATTTCTAATTCGTAGAATGGCAAAT 58.097 29.630 0.00 2.17 46.07 2.32
2853 6613 8.275015 TGATTTCTAATTCGTAGAATGGCAAA 57.725 30.769 0.00 0.00 46.07 3.68
2895 6686 2.202987 CCGGCATGGAGAGTGAGC 60.203 66.667 0.00 0.00 42.00 4.26
3033 6824 7.831193 AGTTTAAGTTCCATATCAGTTCTGCAT 59.169 33.333 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.