Multiple sequence alignment - TraesCS1D01G083500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G083500 chr1D 100.000 2399 0 0 1 2399 66388793 66391191 0.000000e+00 4431
1 TraesCS1D01G083500 chr1D 88.430 1357 106 26 374 1690 66354317 66352972 0.000000e+00 1589
2 TraesCS1D01G083500 chr1D 89.419 1153 100 12 381 1528 66323353 66322218 0.000000e+00 1434
3 TraesCS1D01G083500 chr1D 77.692 390 58 15 1009 1397 66550351 66550712 6.720000e-51 211
4 TraesCS1D01G083500 chr1B 92.055 1158 79 5 402 1552 106903951 106905102 0.000000e+00 1616
5 TraesCS1D01G083500 chr1B 88.597 1219 98 16 374 1579 106817743 106816553 0.000000e+00 1443
6 TraesCS1D01G083500 chr1B 82.785 395 66 2 1004 1397 107130804 107131197 3.790000e-93 351
7 TraesCS1D01G083500 chr1B 87.773 229 12 7 1987 2212 106905687 106905902 1.100000e-63 254
8 TraesCS1D01G083500 chr1B 87.963 216 21 4 1729 1942 106905473 106905685 1.420000e-62 250
9 TraesCS1D01G083500 chr1A 91.161 1120 77 8 469 1581 64896606 64897710 0.000000e+00 1500
10 TraesCS1D01G083500 chr1A 88.493 1234 107 22 374 1580 64836898 64835673 0.000000e+00 1459
11 TraesCS1D01G083500 chr1A 93.220 236 15 1 1 235 54511671 54511906 1.770000e-91 346
12 TraesCS1D01G083500 chr1A 82.278 395 68 2 1004 1397 65234528 65234921 8.210000e-90 340
13 TraesCS1D01G083500 chr3A 96.063 381 14 1 1 380 701939839 701939459 9.420000e-174 619
14 TraesCS1D01G083500 chr7B 94.611 167 8 1 36 201 28066141 28066307 8.510000e-65 257
15 TraesCS1D01G083500 chr7B 86.232 138 16 2 163 299 147583970 147584105 1.920000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G083500 chr1D 66388793 66391191 2398 False 4431.000000 4431 100.000000 1 2399 1 chr1D.!!$F1 2398
1 TraesCS1D01G083500 chr1D 66352972 66354317 1345 True 1589.000000 1589 88.430000 374 1690 1 chr1D.!!$R2 1316
2 TraesCS1D01G083500 chr1D 66322218 66323353 1135 True 1434.000000 1434 89.419000 381 1528 1 chr1D.!!$R1 1147
3 TraesCS1D01G083500 chr1B 106816553 106817743 1190 True 1443.000000 1443 88.597000 374 1579 1 chr1B.!!$R1 1205
4 TraesCS1D01G083500 chr1B 106903951 106905902 1951 False 706.666667 1616 89.263667 402 2212 3 chr1B.!!$F2 1810
5 TraesCS1D01G083500 chr1A 64896606 64897710 1104 False 1500.000000 1500 91.161000 469 1581 1 chr1A.!!$F2 1112
6 TraesCS1D01G083500 chr1A 64835673 64836898 1225 True 1459.000000 1459 88.493000 374 1580 1 chr1A.!!$R1 1206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.037232 GCCAGGAGCCGTATATGGTC 60.037 60.0 12.66 8.53 34.35 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2396 0.041312 ATGACAAGACAAACACGCGC 60.041 50.0 5.73 0.0 0.0 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.865321 CATTTCTGAAATGTATCAAATTGGTCT 57.135 29.630 27.11 0.00 42.53 3.85
72 73 8.870075 ATCAAATTGGTCTTATTATAGAGGGC 57.130 34.615 0.00 0.00 0.00 5.19
73 74 8.045720 TCAAATTGGTCTTATTATAGAGGGCT 57.954 34.615 0.00 0.00 0.00 5.19
74 75 8.502738 TCAAATTGGTCTTATTATAGAGGGCTT 58.497 33.333 0.00 0.00 0.00 4.35
75 76 9.793259 CAAATTGGTCTTATTATAGAGGGCTTA 57.207 33.333 0.00 0.00 0.00 3.09
78 79 7.554959 TGGTCTTATTATAGAGGGCTTAAGG 57.445 40.000 4.29 0.00 0.00 2.69
79 80 6.013639 TGGTCTTATTATAGAGGGCTTAAGGC 60.014 42.308 20.30 20.30 40.90 4.35
80 81 6.213802 GGTCTTATTATAGAGGGCTTAAGGCT 59.786 42.308 26.23 13.74 41.46 4.58
81 82 7.399478 GGTCTTATTATAGAGGGCTTAAGGCTA 59.601 40.741 26.23 13.05 41.46 3.93
82 83 8.471609 GTCTTATTATAGAGGGCTTAAGGCTAG 58.528 40.741 26.23 9.73 41.46 3.42
83 84 7.620094 TCTTATTATAGAGGGCTTAAGGCTAGG 59.380 40.741 26.23 10.36 41.46 3.02
84 85 3.925261 ATAGAGGGCTTAAGGCTAGGA 57.075 47.619 26.23 11.80 41.46 2.94
85 86 2.570386 AGAGGGCTTAAGGCTAGGAA 57.430 50.000 26.23 0.00 41.46 3.36
86 87 3.067645 AGAGGGCTTAAGGCTAGGAAT 57.932 47.619 26.23 7.81 41.46 3.01
87 88 3.398490 AGAGGGCTTAAGGCTAGGAATT 58.602 45.455 26.23 5.94 41.46 2.17
88 89 3.392947 AGAGGGCTTAAGGCTAGGAATTC 59.607 47.826 26.23 8.97 41.46 2.17
89 90 3.123273 AGGGCTTAAGGCTAGGAATTCA 58.877 45.455 26.23 0.00 41.46 2.57
90 91 3.527665 AGGGCTTAAGGCTAGGAATTCAA 59.472 43.478 26.23 0.00 41.46 2.69
91 92 4.168871 AGGGCTTAAGGCTAGGAATTCAAT 59.831 41.667 26.23 0.00 41.46 2.57
92 93 4.895889 GGGCTTAAGGCTAGGAATTCAATT 59.104 41.667 26.23 0.00 41.46 2.32
93 94 6.068670 GGGCTTAAGGCTAGGAATTCAATTA 58.931 40.000 26.23 0.00 41.46 1.40
94 95 6.721668 GGGCTTAAGGCTAGGAATTCAATTAT 59.278 38.462 26.23 0.00 41.46 1.28
95 96 7.888546 GGGCTTAAGGCTAGGAATTCAATTATA 59.111 37.037 26.23 0.00 41.46 0.98
96 97 9.467796 GGCTTAAGGCTAGGAATTCAATTATAT 57.532 33.333 21.08 0.00 41.46 0.86
169 170 8.837788 AAAAGAGCAAAGATGAAATAAAAGGG 57.162 30.769 0.00 0.00 0.00 3.95
170 171 7.544804 AAGAGCAAAGATGAAATAAAAGGGT 57.455 32.000 0.00 0.00 0.00 4.34
171 172 8.650143 AAGAGCAAAGATGAAATAAAAGGGTA 57.350 30.769 0.00 0.00 0.00 3.69
172 173 8.056407 AGAGCAAAGATGAAATAAAAGGGTAC 57.944 34.615 0.00 0.00 0.00 3.34
173 174 7.669722 AGAGCAAAGATGAAATAAAAGGGTACA 59.330 33.333 0.00 0.00 0.00 2.90
174 175 8.366359 AGCAAAGATGAAATAAAAGGGTACAT 57.634 30.769 0.00 0.00 0.00 2.29
175 176 8.815912 AGCAAAGATGAAATAAAAGGGTACATT 58.184 29.630 0.00 0.00 0.00 2.71
176 177 9.435688 GCAAAGATGAAATAAAAGGGTACATTT 57.564 29.630 0.00 0.00 0.00 2.32
183 184 9.357161 TGAAATAAAAGGGTACATTTAGTGTGT 57.643 29.630 0.00 0.00 42.24 3.72
188 189 8.617290 AAAAGGGTACATTTAGTGTGTAAGAG 57.383 34.615 0.00 0.00 42.24 2.85
189 190 7.549147 AAGGGTACATTTAGTGTGTAAGAGA 57.451 36.000 0.00 0.00 42.24 3.10
190 191 7.549147 AGGGTACATTTAGTGTGTAAGAGAA 57.451 36.000 0.00 0.00 42.24 2.87
191 192 7.612677 AGGGTACATTTAGTGTGTAAGAGAAG 58.387 38.462 0.00 0.00 42.24 2.85
192 193 7.453752 AGGGTACATTTAGTGTGTAAGAGAAGA 59.546 37.037 0.00 0.00 42.24 2.87
193 194 7.760340 GGGTACATTTAGTGTGTAAGAGAAGAG 59.240 40.741 0.00 0.00 42.24 2.85
194 195 8.521176 GGTACATTTAGTGTGTAAGAGAAGAGA 58.479 37.037 0.00 0.00 42.24 3.10
195 196 9.562583 GTACATTTAGTGTGTAAGAGAAGAGAG 57.437 37.037 0.00 0.00 42.24 3.20
196 197 8.410673 ACATTTAGTGTGTAAGAGAAGAGAGA 57.589 34.615 0.00 0.00 40.28 3.10
197 198 8.519526 ACATTTAGTGTGTAAGAGAAGAGAGAG 58.480 37.037 0.00 0.00 40.28 3.20
198 199 8.735315 CATTTAGTGTGTAAGAGAAGAGAGAGA 58.265 37.037 0.00 0.00 0.00 3.10
199 200 7.675962 TTAGTGTGTAAGAGAAGAGAGAGAC 57.324 40.000 0.00 0.00 0.00 3.36
200 201 5.876357 AGTGTGTAAGAGAAGAGAGAGACT 58.124 41.667 0.00 0.00 0.00 3.24
201 202 6.303839 AGTGTGTAAGAGAAGAGAGAGACTT 58.696 40.000 0.00 0.00 0.00 3.01
202 203 6.775629 AGTGTGTAAGAGAAGAGAGAGACTTT 59.224 38.462 0.00 0.00 0.00 2.66
203 204 6.861055 GTGTGTAAGAGAAGAGAGAGACTTTG 59.139 42.308 0.00 0.00 0.00 2.77
204 205 6.773200 TGTGTAAGAGAAGAGAGAGACTTTGA 59.227 38.462 0.00 0.00 0.00 2.69
205 206 7.081976 GTGTAAGAGAAGAGAGAGACTTTGAC 58.918 42.308 0.00 0.00 0.00 3.18
206 207 6.773200 TGTAAGAGAAGAGAGAGACTTTGACA 59.227 38.462 0.00 0.00 0.00 3.58
207 208 6.723298 AAGAGAAGAGAGAGACTTTGACAA 57.277 37.500 0.00 0.00 0.00 3.18
208 209 6.084326 AGAGAAGAGAGAGACTTTGACAAC 57.916 41.667 0.00 0.00 0.00 3.32
209 210 5.833131 AGAGAAGAGAGAGACTTTGACAACT 59.167 40.000 0.00 0.00 0.00 3.16
210 211 6.323739 AGAGAAGAGAGAGACTTTGACAACTT 59.676 38.462 0.00 0.00 0.00 2.66
211 212 6.883744 AGAAGAGAGAGACTTTGACAACTTT 58.116 36.000 0.00 0.00 0.00 2.66
212 213 7.334858 AGAAGAGAGAGACTTTGACAACTTTT 58.665 34.615 0.00 0.00 0.00 2.27
213 214 7.494298 AGAAGAGAGAGACTTTGACAACTTTTC 59.506 37.037 0.00 0.00 0.00 2.29
214 215 6.052360 AGAGAGAGACTTTGACAACTTTTCC 58.948 40.000 0.00 0.00 0.00 3.13
215 216 5.995446 AGAGAGACTTTGACAACTTTTCCT 58.005 37.500 0.00 0.00 0.00 3.36
216 217 5.819901 AGAGAGACTTTGACAACTTTTCCTG 59.180 40.000 0.00 0.00 0.00 3.86
217 218 4.336713 AGAGACTTTGACAACTTTTCCTGC 59.663 41.667 0.00 0.00 0.00 4.85
218 219 3.381590 AGACTTTGACAACTTTTCCTGCC 59.618 43.478 0.00 0.00 0.00 4.85
219 220 3.096092 ACTTTGACAACTTTTCCTGCCA 58.904 40.909 0.00 0.00 0.00 4.92
220 221 3.706086 ACTTTGACAACTTTTCCTGCCAT 59.294 39.130 0.00 0.00 0.00 4.40
221 222 3.731652 TTGACAACTTTTCCTGCCATG 57.268 42.857 0.00 0.00 0.00 3.66
222 223 1.340889 TGACAACTTTTCCTGCCATGC 59.659 47.619 0.00 0.00 0.00 4.06
223 224 1.340889 GACAACTTTTCCTGCCATGCA 59.659 47.619 0.00 0.00 36.92 3.96
224 225 1.972795 ACAACTTTTCCTGCCATGCAT 59.027 42.857 0.00 0.00 38.13 3.96
225 226 2.289195 ACAACTTTTCCTGCCATGCATG 60.289 45.455 20.19 20.19 38.13 4.06
226 227 0.248289 ACTTTTCCTGCCATGCATGC 59.752 50.000 21.69 11.82 38.13 4.06
227 228 0.248012 CTTTTCCTGCCATGCATGCA 59.752 50.000 25.04 25.04 38.13 3.96
228 229 0.906066 TTTTCCTGCCATGCATGCAT 59.094 45.000 27.46 27.46 38.13 3.96
229 230 0.906066 TTTCCTGCCATGCATGCATT 59.094 45.000 30.32 13.26 38.13 3.56
230 231 0.176910 TTCCTGCCATGCATGCATTG 59.823 50.000 30.32 26.75 38.13 2.82
231 232 0.973496 TCCTGCCATGCATGCATTGT 60.973 50.000 30.32 8.66 38.13 2.71
232 233 0.809636 CCTGCCATGCATGCATTGTG 60.810 55.000 30.32 20.52 38.13 3.33
233 234 0.809636 CTGCCATGCATGCATTGTGG 60.810 55.000 30.32 28.65 38.13 4.17
234 235 1.522806 GCCATGCATGCATTGTGGG 60.523 57.895 30.55 27.26 33.90 4.61
235 236 1.145156 CCATGCATGCATTGTGGGG 59.855 57.895 30.32 22.83 33.90 4.96
236 237 1.145156 CATGCATGCATTGTGGGGG 59.855 57.895 30.32 13.61 33.90 5.40
237 238 2.737881 ATGCATGCATTGTGGGGGC 61.738 57.895 27.46 0.00 31.82 5.80
238 239 4.165486 GCATGCATTGTGGGGGCC 62.165 66.667 14.21 0.00 0.00 5.80
239 240 2.684294 CATGCATTGTGGGGGCCA 60.684 61.111 4.39 0.00 0.00 5.36
240 241 2.364579 ATGCATTGTGGGGGCCAG 60.365 61.111 4.39 0.00 32.34 4.85
241 242 3.988050 ATGCATTGTGGGGGCCAGG 62.988 63.158 4.39 0.00 32.34 4.45
242 243 4.380945 GCATTGTGGGGGCCAGGA 62.381 66.667 4.39 0.00 32.34 3.86
243 244 2.043652 CATTGTGGGGGCCAGGAG 60.044 66.667 4.39 0.00 32.34 3.69
244 245 4.066139 ATTGTGGGGGCCAGGAGC 62.066 66.667 4.39 0.00 42.60 4.70
254 255 2.058675 GCCAGGAGCCGTATATGGT 58.941 57.895 12.66 0.00 34.35 3.55
255 256 0.037232 GCCAGGAGCCGTATATGGTC 60.037 60.000 12.66 8.53 34.35 4.02
256 257 1.633774 CCAGGAGCCGTATATGGTCT 58.366 55.000 12.66 9.78 0.00 3.85
257 258 1.546476 CCAGGAGCCGTATATGGTCTC 59.454 57.143 19.33 19.33 33.85 3.36
258 259 1.546476 CAGGAGCCGTATATGGTCTCC 59.454 57.143 29.19 29.19 45.24 3.71
259 260 1.926108 GGAGCCGTATATGGTCTCCT 58.074 55.000 29.13 14.56 43.34 3.69
260 261 3.083122 GGAGCCGTATATGGTCTCCTA 57.917 52.381 29.13 0.00 43.34 2.94
261 262 3.633418 GGAGCCGTATATGGTCTCCTAT 58.367 50.000 29.13 6.90 43.34 2.57
262 263 4.789807 GGAGCCGTATATGGTCTCCTATA 58.210 47.826 29.13 0.00 43.34 1.31
263 264 4.822896 GGAGCCGTATATGGTCTCCTATAG 59.177 50.000 29.13 0.00 43.34 1.31
264 265 4.794334 AGCCGTATATGGTCTCCTATAGG 58.206 47.826 13.07 13.07 0.00 2.57
265 266 3.318557 GCCGTATATGGTCTCCTATAGGC 59.681 52.174 14.50 0.37 34.44 3.93
266 267 4.794334 CCGTATATGGTCTCCTATAGGCT 58.206 47.826 14.50 0.00 34.44 4.58
267 268 5.202004 CCGTATATGGTCTCCTATAGGCTT 58.798 45.833 14.50 1.28 34.44 4.35
268 269 5.067936 CCGTATATGGTCTCCTATAGGCTTG 59.932 48.000 14.50 6.89 34.44 4.01
269 270 5.067936 CGTATATGGTCTCCTATAGGCTTGG 59.932 48.000 14.50 4.48 34.44 3.61
270 271 2.868964 TGGTCTCCTATAGGCTTGGT 57.131 50.000 14.50 0.00 34.44 3.67
271 272 3.985553 TGGTCTCCTATAGGCTTGGTA 57.014 47.619 14.50 0.00 34.44 3.25
272 273 4.487282 TGGTCTCCTATAGGCTTGGTAT 57.513 45.455 14.50 0.00 34.44 2.73
273 274 4.160329 TGGTCTCCTATAGGCTTGGTATG 58.840 47.826 14.50 0.00 34.44 2.39
274 275 4.140782 TGGTCTCCTATAGGCTTGGTATGA 60.141 45.833 14.50 0.00 34.44 2.15
275 276 4.838986 GGTCTCCTATAGGCTTGGTATGAA 59.161 45.833 14.50 0.00 34.44 2.57
276 277 5.307196 GGTCTCCTATAGGCTTGGTATGAAA 59.693 44.000 14.50 0.00 34.44 2.69
277 278 6.183361 GGTCTCCTATAGGCTTGGTATGAAAA 60.183 42.308 14.50 0.00 34.44 2.29
278 279 6.706716 GTCTCCTATAGGCTTGGTATGAAAAC 59.293 42.308 14.50 0.00 34.44 2.43
279 280 6.385759 TCTCCTATAGGCTTGGTATGAAAACA 59.614 38.462 14.50 0.00 34.44 2.83
280 281 6.964464 TCCTATAGGCTTGGTATGAAAACAA 58.036 36.000 14.50 0.00 34.44 2.83
281 282 6.826741 TCCTATAGGCTTGGTATGAAAACAAC 59.173 38.462 14.50 0.00 34.44 3.32
282 283 5.914898 ATAGGCTTGGTATGAAAACAACC 57.085 39.130 0.00 0.00 0.00 3.77
283 284 3.571590 AGGCTTGGTATGAAAACAACCA 58.428 40.909 0.00 0.00 41.47 3.67
304 305 5.545063 CAATAATTAATTGGTGGACCCCC 57.455 43.478 11.05 0.00 41.19 5.40
305 306 2.153034 AATTAATTGGTGGACCCCCG 57.847 50.000 0.00 0.00 34.29 5.73
306 307 0.396556 ATTAATTGGTGGACCCCCGC 60.397 55.000 0.00 0.00 42.20 6.13
307 308 1.790635 TTAATTGGTGGACCCCCGCA 61.791 55.000 0.00 0.00 44.70 5.69
308 309 2.487274 TAATTGGTGGACCCCCGCAC 62.487 60.000 0.00 0.00 44.70 5.34
312 313 4.404098 GTGGACCCCCGCACGAAT 62.404 66.667 0.00 0.00 42.48 3.34
313 314 4.090588 TGGACCCCCGCACGAATC 62.091 66.667 0.00 0.00 34.29 2.52
314 315 4.090588 GGACCCCCGCACGAATCA 62.091 66.667 0.00 0.00 0.00 2.57
315 316 2.189521 GACCCCCGCACGAATCAT 59.810 61.111 0.00 0.00 0.00 2.45
316 317 2.124736 ACCCCCGCACGAATCATG 60.125 61.111 0.00 0.00 0.00 3.07
317 318 2.189257 CCCCCGCACGAATCATGA 59.811 61.111 0.00 0.00 0.00 3.07
318 319 1.227943 CCCCCGCACGAATCATGAT 60.228 57.895 1.18 1.18 0.00 2.45
319 320 1.509644 CCCCCGCACGAATCATGATG 61.510 60.000 9.46 0.00 0.00 3.07
320 321 1.280746 CCCGCACGAATCATGATGC 59.719 57.895 9.46 6.24 34.66 3.91
321 322 1.438562 CCCGCACGAATCATGATGCA 61.439 55.000 14.27 0.00 37.97 3.96
322 323 0.589708 CCGCACGAATCATGATGCAT 59.410 50.000 14.27 0.00 37.97 3.96
323 324 1.799994 CCGCACGAATCATGATGCATA 59.200 47.619 14.27 0.00 37.97 3.14
324 325 2.417586 CCGCACGAATCATGATGCATAT 59.582 45.455 14.27 0.00 37.97 1.78
325 326 3.413558 CGCACGAATCATGATGCATATG 58.586 45.455 14.27 9.38 37.97 1.78
326 327 3.120442 CGCACGAATCATGATGCATATGT 60.120 43.478 14.27 0.45 37.97 2.29
327 328 4.156182 GCACGAATCATGATGCATATGTG 58.844 43.478 14.27 13.35 38.00 3.21
328 329 4.719040 CACGAATCATGATGCATATGTGG 58.281 43.478 14.27 0.00 0.00 4.17
329 330 4.453136 CACGAATCATGATGCATATGTGGA 59.547 41.667 14.27 0.00 0.00 4.02
330 331 5.123344 CACGAATCATGATGCATATGTGGAT 59.877 40.000 14.27 0.00 39.30 3.41
331 332 5.123344 ACGAATCATGATGCATATGTGGATG 59.877 40.000 14.27 2.75 36.44 3.51
332 333 5.353123 CGAATCATGATGCATATGTGGATGA 59.647 40.000 14.27 7.72 36.44 2.92
333 334 6.038271 CGAATCATGATGCATATGTGGATGAT 59.962 38.462 14.27 9.47 36.44 2.45
334 335 6.699575 ATCATGATGCATATGTGGATGATG 57.300 37.500 14.93 14.93 44.83 3.07
335 336 4.947388 TCATGATGCATATGTGGATGATGG 59.053 41.667 19.15 5.44 44.06 3.51
336 337 4.644163 TGATGCATATGTGGATGATGGA 57.356 40.909 0.00 0.00 36.44 3.41
337 338 5.187621 TGATGCATATGTGGATGATGGAT 57.812 39.130 0.00 0.00 36.44 3.41
338 339 4.947388 TGATGCATATGTGGATGATGGATG 59.053 41.667 0.00 0.00 36.44 3.51
339 340 3.086282 TGCATATGTGGATGATGGATGC 58.914 45.455 4.29 0.00 38.89 3.91
340 341 3.245122 TGCATATGTGGATGATGGATGCT 60.245 43.478 4.29 0.00 39.13 3.79
341 342 3.762288 GCATATGTGGATGATGGATGCTT 59.238 43.478 4.29 0.00 36.22 3.91
342 343 4.142447 GCATATGTGGATGATGGATGCTTC 60.142 45.833 4.29 0.00 36.22 3.86
343 344 3.588210 ATGTGGATGATGGATGCTTCA 57.412 42.857 5.27 5.27 0.00 3.02
344 345 2.646930 TGTGGATGATGGATGCTTCAC 58.353 47.619 4.90 0.64 0.00 3.18
345 346 1.952296 GTGGATGATGGATGCTTCACC 59.048 52.381 4.90 9.15 0.00 4.02
346 347 1.233019 GGATGATGGATGCTTCACCG 58.767 55.000 4.90 0.00 0.00 4.94
347 348 1.233019 GATGATGGATGCTTCACCGG 58.767 55.000 0.00 0.00 0.00 5.28
348 349 0.548031 ATGATGGATGCTTCACCGGT 59.452 50.000 0.00 0.00 0.00 5.28
349 350 1.199615 TGATGGATGCTTCACCGGTA 58.800 50.000 6.87 0.00 0.00 4.02
350 351 1.138859 TGATGGATGCTTCACCGGTAG 59.861 52.381 6.87 2.57 0.00 3.18
351 352 0.179045 ATGGATGCTTCACCGGTAGC 60.179 55.000 20.40 20.40 37.87 3.58
352 353 1.264749 TGGATGCTTCACCGGTAGCT 61.265 55.000 25.70 13.95 38.18 3.32
353 354 0.530870 GGATGCTTCACCGGTAGCTC 60.531 60.000 25.70 19.79 38.18 4.09
354 355 0.530870 GATGCTTCACCGGTAGCTCC 60.531 60.000 25.70 15.42 38.18 4.70
355 356 1.972660 ATGCTTCACCGGTAGCTCCC 61.973 60.000 25.70 6.56 38.18 4.30
356 357 2.359967 GCTTCACCGGTAGCTCCCT 61.360 63.158 20.01 0.00 34.87 4.20
357 358 1.900545 GCTTCACCGGTAGCTCCCTT 61.901 60.000 20.01 0.00 34.87 3.95
358 359 0.108138 CTTCACCGGTAGCTCCCTTG 60.108 60.000 6.87 0.00 0.00 3.61
359 360 0.543410 TTCACCGGTAGCTCCCTTGA 60.543 55.000 6.87 0.00 0.00 3.02
360 361 1.218316 CACCGGTAGCTCCCTTGAC 59.782 63.158 6.87 0.00 0.00 3.18
361 362 1.988406 ACCGGTAGCTCCCTTGACC 60.988 63.158 4.49 0.00 0.00 4.02
363 364 2.901042 GGTAGCTCCCTTGACCGG 59.099 66.667 0.00 0.00 0.00 5.28
364 365 1.988406 GGTAGCTCCCTTGACCGGT 60.988 63.158 6.92 6.92 0.00 5.28
365 366 0.685458 GGTAGCTCCCTTGACCGGTA 60.685 60.000 7.34 0.00 0.00 4.02
366 367 1.188863 GTAGCTCCCTTGACCGGTAA 58.811 55.000 7.34 0.00 0.00 2.85
367 368 1.551883 GTAGCTCCCTTGACCGGTAAA 59.448 52.381 7.34 5.32 0.00 2.01
368 369 1.061546 AGCTCCCTTGACCGGTAAAA 58.938 50.000 7.34 4.25 0.00 1.52
369 370 1.003233 AGCTCCCTTGACCGGTAAAAG 59.997 52.381 7.34 14.86 0.00 2.27
370 371 1.002773 GCTCCCTTGACCGGTAAAAGA 59.997 52.381 24.44 14.98 0.00 2.52
371 372 2.935676 GCTCCCTTGACCGGTAAAAGAG 60.936 54.545 24.44 22.36 0.00 2.85
372 373 2.565834 CTCCCTTGACCGGTAAAAGAGA 59.434 50.000 24.44 18.07 0.00 3.10
377 378 4.213482 CCTTGACCGGTAAAAGAGACTTTG 59.787 45.833 24.44 7.77 0.00 2.77
379 380 2.140717 ACCGGTAAAAGAGACTTTGCG 58.859 47.619 4.49 0.00 0.00 4.85
454 467 3.246112 TCCTCAACCACCACCCGG 61.246 66.667 0.00 0.00 38.77 5.73
802 826 2.048222 CCGCCTTCGTCTTCTGCA 60.048 61.111 0.00 0.00 0.00 4.41
907 931 1.002888 TCGTCTACACGTTCCTCCTCT 59.997 52.381 0.00 0.00 46.76 3.69
944 971 2.130426 TGATCTGCGCCTCCCTCTC 61.130 63.158 4.18 0.00 0.00 3.20
982 1024 4.044439 CCCAGGAGCTGCTTGGCT 62.044 66.667 12.58 0.00 42.19 4.75
998 1046 1.513622 GCTCTCCTCCGGACAAGAC 59.486 63.158 0.00 0.00 0.00 3.01
1204 1252 1.741770 GACGGTTGCATCTTCGCCT 60.742 57.895 0.00 0.00 0.00 5.52
1207 1255 1.508088 GGTTGCATCTTCGCCTTGG 59.492 57.895 0.00 0.00 0.00 3.61
1210 1258 1.865788 TTGCATCTTCGCCTTGGTGC 61.866 55.000 0.00 0.00 0.00 5.01
1212 1260 1.986575 GCATCTTCGCCTTGGTGCTC 61.987 60.000 0.00 0.00 0.00 4.26
1220 1268 2.680913 CCTTGGTGCTCGCTTTCCG 61.681 63.158 0.00 0.00 38.61 4.30
1476 1533 1.032657 TCCAGCGACTCTGACTAGCC 61.033 60.000 0.00 0.00 45.72 3.93
1497 1556 1.448540 CTGCATCCTGTCCACGACC 60.449 63.158 0.00 0.00 0.00 4.79
1532 1595 7.096312 GCAACTTGAAGAAGATTTGCTTAAGTG 60.096 37.037 9.39 0.00 37.82 3.16
1585 1772 7.275999 GCTGTAGTCCTAAGTTTATGTCAACTC 59.724 40.741 0.00 0.00 35.87 3.01
1593 1789 4.227538 AGTTTATGTCAACTCTCGTCGTG 58.772 43.478 0.00 0.00 30.76 4.35
1594 1790 4.023450 AGTTTATGTCAACTCTCGTCGTGA 60.023 41.667 0.00 0.00 30.76 4.35
1595 1791 2.333389 ATGTCAACTCTCGTCGTGAC 57.667 50.000 6.10 6.10 0.00 3.67
1596 1792 1.306148 TGTCAACTCTCGTCGTGACT 58.694 50.000 12.42 0.00 0.00 3.41
1597 1793 1.263484 TGTCAACTCTCGTCGTGACTC 59.737 52.381 12.42 0.00 0.00 3.36
1598 1794 0.511653 TCAACTCTCGTCGTGACTCG 59.488 55.000 0.00 0.00 41.41 4.18
1599 1795 0.235144 CAACTCTCGTCGTGACTCGT 59.765 55.000 0.00 0.00 40.80 4.18
1602 1798 0.511653 CTCTCGTCGTGACTCGTGAA 59.488 55.000 0.00 0.00 40.80 3.18
1631 1827 2.804527 CTGATTATCACTGCACCGGATG 59.195 50.000 9.46 3.68 0.00 3.51
1677 1883 2.797786 GTCTGTGAGACCCTGAGTAGT 58.202 52.381 0.00 0.00 39.28 2.73
1686 1892 1.358103 ACCCTGAGTAGTAGTGCTGGA 59.642 52.381 0.00 0.00 0.00 3.86
1693 1907 4.166337 TGAGTAGTAGTGCTGGATAGGAGT 59.834 45.833 0.00 0.00 0.00 3.85
1700 1914 6.784969 AGTAGTGCTGGATAGGAGTTTGATAT 59.215 38.462 0.00 0.00 0.00 1.63
1727 1978 0.732571 ATGGCCAAAGCGTGTAATCG 59.267 50.000 10.96 0.00 41.24 3.34
1737 1988 2.164827 AGCGTGTAATCGTGGTCACATA 59.835 45.455 1.90 0.00 0.00 2.29
1740 1991 4.033587 GCGTGTAATCGTGGTCACATAATT 59.966 41.667 1.90 1.46 0.00 1.40
1741 1992 5.724239 CGTGTAATCGTGGTCACATAATTC 58.276 41.667 1.90 0.00 0.00 2.17
1746 2029 3.669536 TCGTGGTCACATAATTCTGCAA 58.330 40.909 1.90 0.00 0.00 4.08
1770 2053 4.332819 AGATGCTTATTTACTTGCACGTCC 59.667 41.667 0.00 0.00 38.29 4.79
1782 2065 5.428253 ACTTGCACGTCCTGTCATTATTAT 58.572 37.500 0.00 0.00 0.00 1.28
1792 2075 7.506114 GTCCTGTCATTATTATTGTGACCCTA 58.494 38.462 0.00 0.00 41.09 3.53
1794 2077 7.347222 TCCTGTCATTATTATTGTGACCCTACT 59.653 37.037 0.00 0.00 41.09 2.57
1796 2079 9.477484 CTGTCATTATTATTGTGACCCTACTAC 57.523 37.037 0.00 0.00 41.09 2.73
1836 2119 7.756395 TCTCAAAGAGAAGAAATTGCTTCAT 57.244 32.000 25.11 12.43 45.21 2.57
1837 2120 8.174733 TCTCAAAGAGAAGAAATTGCTTCATT 57.825 30.769 25.11 16.96 45.21 2.57
1853 2136 6.007076 TGCTTCATTGGAATTGGTACAGTAA 58.993 36.000 0.00 0.00 42.39 2.24
1854 2137 6.150976 TGCTTCATTGGAATTGGTACAGTAAG 59.849 38.462 0.00 0.00 42.39 2.34
1918 2202 9.420118 ACTATAAGGATGCAACAAATATTTGGA 57.580 29.630 27.43 11.99 42.34 3.53
1922 2206 7.243604 AGGATGCAACAAATATTTGGAAAGA 57.756 32.000 27.43 11.09 42.34 2.52
1932 2216 6.605471 AATATTTGGAAAGACAAACCCCTC 57.395 37.500 0.00 0.00 42.51 4.30
1942 2226 5.010708 AGACAAACCCCTCCAAATGTTAT 57.989 39.130 0.00 0.00 0.00 1.89
1943 2227 5.402630 AGACAAACCCCTCCAAATGTTATT 58.597 37.500 0.00 0.00 0.00 1.40
1944 2228 5.843969 AGACAAACCCCTCCAAATGTTATTT 59.156 36.000 0.00 0.00 0.00 1.40
1949 2233 8.371699 CAAACCCCTCCAAATGTTATTTAGAAA 58.628 33.333 0.00 0.00 0.00 2.52
1950 2234 7.718334 ACCCCTCCAAATGTTATTTAGAAAG 57.282 36.000 0.00 0.00 0.00 2.62
1951 2235 6.154534 ACCCCTCCAAATGTTATTTAGAAAGC 59.845 38.462 0.00 0.00 0.00 3.51
1952 2236 6.381133 CCCCTCCAAATGTTATTTAGAAAGCT 59.619 38.462 0.00 0.00 0.00 3.74
1953 2237 7.559897 CCCCTCCAAATGTTATTTAGAAAGCTA 59.440 37.037 0.00 0.00 0.00 3.32
1954 2238 8.406297 CCCTCCAAATGTTATTTAGAAAGCTAC 58.594 37.037 0.00 0.00 0.00 3.58
1955 2239 8.956426 CCTCCAAATGTTATTTAGAAAGCTACA 58.044 33.333 0.00 0.00 0.00 2.74
1958 2242 9.573133 CCAAATGTTATTTAGAAAGCTACAAGG 57.427 33.333 0.00 0.00 0.00 3.61
1968 2252 9.436957 TTTAGAAAGCTACAAGGAATTAGTCTG 57.563 33.333 0.00 0.00 0.00 3.51
1969 2253 7.010339 AGAAAGCTACAAGGAATTAGTCTGT 57.990 36.000 0.00 0.00 0.00 3.41
1970 2254 7.454225 AGAAAGCTACAAGGAATTAGTCTGTT 58.546 34.615 0.00 0.00 0.00 3.16
1971 2255 8.594550 AGAAAGCTACAAGGAATTAGTCTGTTA 58.405 33.333 0.00 0.00 0.00 2.41
1972 2256 9.384764 GAAAGCTACAAGGAATTAGTCTGTTAT 57.615 33.333 0.00 0.00 0.00 1.89
1973 2257 9.740710 AAAGCTACAAGGAATTAGTCTGTTATT 57.259 29.630 0.00 0.00 0.00 1.40
1974 2258 8.950208 AGCTACAAGGAATTAGTCTGTTATTC 57.050 34.615 0.00 0.00 0.00 1.75
1975 2259 7.707035 AGCTACAAGGAATTAGTCTGTTATTCG 59.293 37.037 0.00 0.00 0.00 3.34
1976 2260 6.663944 ACAAGGAATTAGTCTGTTATTCGC 57.336 37.500 0.00 0.00 0.00 4.70
1977 2261 6.170506 ACAAGGAATTAGTCTGTTATTCGCA 58.829 36.000 0.00 0.00 0.00 5.10
1978 2262 6.653320 ACAAGGAATTAGTCTGTTATTCGCAA 59.347 34.615 0.00 0.00 0.00 4.85
1979 2263 7.174253 ACAAGGAATTAGTCTGTTATTCGCAAA 59.826 33.333 0.00 0.00 0.00 3.68
1980 2264 7.681939 AGGAATTAGTCTGTTATTCGCAAAA 57.318 32.000 0.00 0.00 0.00 2.44
1981 2265 8.106247 AGGAATTAGTCTGTTATTCGCAAAAA 57.894 30.769 0.00 0.00 0.00 1.94
2071 2356 8.178313 TGTCATAGATGTGGTTATTAGATCGT 57.822 34.615 0.00 0.00 0.00 3.73
2108 2393 6.470235 GCTTTCATGATTATTAGTGTGTGTGC 59.530 38.462 0.00 0.00 0.00 4.57
2109 2394 5.717038 TCATGATTATTAGTGTGTGTGCG 57.283 39.130 0.00 0.00 0.00 5.34
2110 2395 4.033932 TCATGATTATTAGTGTGTGTGCGC 59.966 41.667 0.00 0.00 0.00 6.09
2111 2396 2.347150 TGATTATTAGTGTGTGTGCGCG 59.653 45.455 0.00 0.00 0.00 6.86
2112 2397 0.440758 TTATTAGTGTGTGTGCGCGC 59.559 50.000 27.26 27.26 35.99 6.86
2113 2398 1.679187 TATTAGTGTGTGTGCGCGCG 61.679 55.000 28.44 28.44 40.26 6.86
2130 2415 0.041312 GCGCGTGTTTGTCTTGTCAT 60.041 50.000 8.43 0.00 0.00 3.06
2131 2416 1.193650 GCGCGTGTTTGTCTTGTCATA 59.806 47.619 8.43 0.00 0.00 2.15
2132 2417 2.822827 CGCGTGTTTGTCTTGTCATAC 58.177 47.619 0.00 0.00 0.00 2.39
2157 2442 9.566432 ACTTAAAATCTCAACCATCTATGATCC 57.434 33.333 0.00 0.00 0.00 3.36
2161 2446 4.474394 TCTCAACCATCTATGATCCGTCT 58.526 43.478 0.00 0.00 0.00 4.18
2179 2464 5.883115 TCCGTCTAGATATTCCATCTAGCAG 59.117 44.000 13.95 10.61 44.39 4.24
2212 2497 6.012337 TCTCCAATGAATATGGGTGCTTAA 57.988 37.500 0.00 0.00 38.54 1.85
2213 2498 6.613699 TCTCCAATGAATATGGGTGCTTAAT 58.386 36.000 0.00 0.00 38.54 1.40
2214 2499 6.716628 TCTCCAATGAATATGGGTGCTTAATC 59.283 38.462 0.00 0.00 38.54 1.75
2215 2500 5.774690 TCCAATGAATATGGGTGCTTAATCC 59.225 40.000 0.00 0.00 38.54 3.01
2216 2501 5.776716 CCAATGAATATGGGTGCTTAATCCT 59.223 40.000 0.00 0.00 34.15 3.24
2217 2502 6.947733 CCAATGAATATGGGTGCTTAATCCTA 59.052 38.462 0.00 0.00 34.15 2.94
2218 2503 7.121759 CCAATGAATATGGGTGCTTAATCCTAG 59.878 40.741 0.00 0.00 34.15 3.02
2219 2504 7.574021 ATGAATATGGGTGCTTAATCCTAGA 57.426 36.000 0.00 0.00 0.00 2.43
2220 2505 7.387265 TGAATATGGGTGCTTAATCCTAGAA 57.613 36.000 0.00 0.00 0.00 2.10
2221 2506 7.988937 TGAATATGGGTGCTTAATCCTAGAAT 58.011 34.615 0.00 0.00 0.00 2.40
2222 2507 8.448008 TGAATATGGGTGCTTAATCCTAGAATT 58.552 33.333 0.00 0.00 0.00 2.17
2223 2508 8.641498 AATATGGGTGCTTAATCCTAGAATTG 57.359 34.615 0.00 0.00 0.00 2.32
2224 2509 5.708736 TGGGTGCTTAATCCTAGAATTGA 57.291 39.130 0.00 0.00 0.00 2.57
2225 2510 5.437060 TGGGTGCTTAATCCTAGAATTGAC 58.563 41.667 0.00 0.00 0.00 3.18
2226 2511 5.045213 TGGGTGCTTAATCCTAGAATTGACA 60.045 40.000 0.00 0.00 0.00 3.58
2227 2512 5.885912 GGGTGCTTAATCCTAGAATTGACAA 59.114 40.000 0.00 0.00 0.00 3.18
2228 2513 6.547510 GGGTGCTTAATCCTAGAATTGACAAT 59.452 38.462 0.00 0.00 0.00 2.71
2229 2514 7.719633 GGGTGCTTAATCCTAGAATTGACAATA 59.280 37.037 0.00 0.00 0.00 1.90
2230 2515 9.120538 GGTGCTTAATCCTAGAATTGACAATAA 57.879 33.333 0.00 0.00 0.00 1.40
2236 2521 8.900983 AATCCTAGAATTGACAATAAGAGAGC 57.099 34.615 0.00 0.00 0.00 4.09
2237 2522 6.821388 TCCTAGAATTGACAATAAGAGAGCC 58.179 40.000 0.00 0.00 0.00 4.70
2238 2523 6.613271 TCCTAGAATTGACAATAAGAGAGCCT 59.387 38.462 0.00 0.00 0.00 4.58
2239 2524 6.928492 CCTAGAATTGACAATAAGAGAGCCTC 59.072 42.308 0.00 0.00 0.00 4.70
2240 2525 5.355596 AGAATTGACAATAAGAGAGCCTCG 58.644 41.667 0.00 0.00 35.36 4.63
2241 2526 3.526931 TTGACAATAAGAGAGCCTCGG 57.473 47.619 0.00 0.00 35.36 4.63
2242 2527 2.735151 TGACAATAAGAGAGCCTCGGA 58.265 47.619 0.00 0.00 35.36 4.55
2243 2528 2.690497 TGACAATAAGAGAGCCTCGGAG 59.310 50.000 0.00 0.00 35.36 4.63
2244 2529 2.035321 GACAATAAGAGAGCCTCGGAGG 59.965 54.545 19.95 19.95 38.80 4.30
2245 2530 2.035632 CAATAAGAGAGCCTCGGAGGT 58.964 52.381 24.30 11.82 37.80 3.85
2246 2531 1.698506 ATAAGAGAGCCTCGGAGGTG 58.301 55.000 24.30 1.36 37.80 4.00
2247 2532 1.038130 TAAGAGAGCCTCGGAGGTGC 61.038 60.000 24.30 16.25 37.80 5.01
2248 2533 2.757917 GAGAGCCTCGGAGGTGCT 60.758 66.667 24.30 20.30 37.80 4.40
2249 2534 2.284258 AGAGCCTCGGAGGTGCTT 60.284 61.111 24.30 8.78 37.80 3.91
2250 2535 1.000486 AGAGCCTCGGAGGTGCTTA 60.000 57.895 24.30 0.00 37.80 3.09
2251 2536 0.614979 AGAGCCTCGGAGGTGCTTAA 60.615 55.000 24.30 0.00 37.80 1.85
2252 2537 0.179097 GAGCCTCGGAGGTGCTTAAG 60.179 60.000 24.30 0.00 37.80 1.85
2253 2538 0.905337 AGCCTCGGAGGTGCTTAAGT 60.905 55.000 24.30 0.00 37.80 2.24
2254 2539 0.741221 GCCTCGGAGGTGCTTAAGTG 60.741 60.000 24.30 0.00 37.80 3.16
2255 2540 0.895530 CCTCGGAGGTGCTTAAGTGA 59.104 55.000 16.15 0.00 0.00 3.41
2256 2541 1.134965 CCTCGGAGGTGCTTAAGTGAG 60.135 57.143 16.15 1.34 0.00 3.51
2257 2542 1.819288 CTCGGAGGTGCTTAAGTGAGA 59.181 52.381 4.02 0.00 0.00 3.27
2258 2543 1.544691 TCGGAGGTGCTTAAGTGAGAC 59.455 52.381 4.02 0.00 0.00 3.36
2259 2544 1.546476 CGGAGGTGCTTAAGTGAGACT 59.454 52.381 4.02 0.00 0.00 3.24
2260 2545 2.672478 CGGAGGTGCTTAAGTGAGACTG 60.672 54.545 4.02 0.00 0.00 3.51
2261 2546 2.342179 GAGGTGCTTAAGTGAGACTGC 58.658 52.381 4.02 0.00 0.00 4.40
2262 2547 1.002544 AGGTGCTTAAGTGAGACTGCC 59.997 52.381 4.02 0.00 0.00 4.85
2263 2548 1.270839 GGTGCTTAAGTGAGACTGCCA 60.271 52.381 4.02 0.00 0.00 4.92
2264 2549 2.494059 GTGCTTAAGTGAGACTGCCAA 58.506 47.619 4.02 0.00 0.00 4.52
2265 2550 2.224314 GTGCTTAAGTGAGACTGCCAAC 59.776 50.000 4.02 0.00 0.00 3.77
2266 2551 1.461127 GCTTAAGTGAGACTGCCAACG 59.539 52.381 4.02 0.00 0.00 4.10
2267 2552 2.866460 GCTTAAGTGAGACTGCCAACGA 60.866 50.000 4.02 0.00 0.00 3.85
2268 2553 3.589988 CTTAAGTGAGACTGCCAACGAT 58.410 45.455 0.00 0.00 0.00 3.73
2269 2554 4.744570 CTTAAGTGAGACTGCCAACGATA 58.255 43.478 0.00 0.00 0.00 2.92
2270 2555 3.678056 AAGTGAGACTGCCAACGATAA 57.322 42.857 0.00 0.00 0.00 1.75
2271 2556 3.895232 AGTGAGACTGCCAACGATAAT 57.105 42.857 0.00 0.00 0.00 1.28
2272 2557 4.207891 AGTGAGACTGCCAACGATAATT 57.792 40.909 0.00 0.00 0.00 1.40
2273 2558 4.184629 AGTGAGACTGCCAACGATAATTC 58.815 43.478 0.00 0.00 0.00 2.17
2274 2559 3.309954 GTGAGACTGCCAACGATAATTCC 59.690 47.826 0.00 0.00 0.00 3.01
2275 2560 3.055458 TGAGACTGCCAACGATAATTCCA 60.055 43.478 0.00 0.00 0.00 3.53
2276 2561 3.938963 GAGACTGCCAACGATAATTCCAA 59.061 43.478 0.00 0.00 0.00 3.53
2277 2562 3.689649 AGACTGCCAACGATAATTCCAAC 59.310 43.478 0.00 0.00 0.00 3.77
2278 2563 2.418628 ACTGCCAACGATAATTCCAACG 59.581 45.455 0.00 0.00 0.00 4.10
2279 2564 1.131504 TGCCAACGATAATTCCAACGC 59.868 47.619 0.00 0.00 0.00 4.84
2280 2565 1.533129 GCCAACGATAATTCCAACGCC 60.533 52.381 0.00 0.00 0.00 5.68
2281 2566 1.267832 CCAACGATAATTCCAACGCCG 60.268 52.381 0.00 0.00 0.00 6.46
2282 2567 1.011333 AACGATAATTCCAACGCCGG 58.989 50.000 0.00 0.00 0.00 6.13
2283 2568 1.278637 CGATAATTCCAACGCCGGC 59.721 57.895 19.07 19.07 0.00 6.13
2284 2569 1.157870 CGATAATTCCAACGCCGGCT 61.158 55.000 26.68 8.92 0.00 5.52
2285 2570 1.870580 CGATAATTCCAACGCCGGCTA 60.871 52.381 26.68 7.64 0.00 3.93
2286 2571 1.798813 GATAATTCCAACGCCGGCTAG 59.201 52.381 26.68 12.89 0.00 3.42
2287 2572 0.538118 TAATTCCAACGCCGGCTAGT 59.462 50.000 26.68 13.67 0.00 2.57
2288 2573 0.538118 AATTCCAACGCCGGCTAGTA 59.462 50.000 26.68 5.02 0.00 1.82
2289 2574 0.538118 ATTCCAACGCCGGCTAGTAA 59.462 50.000 26.68 12.47 0.00 2.24
2290 2575 0.321021 TTCCAACGCCGGCTAGTAAA 59.679 50.000 26.68 10.57 0.00 2.01
2291 2576 0.321021 TCCAACGCCGGCTAGTAAAA 59.679 50.000 26.68 0.31 0.00 1.52
2292 2577 0.445043 CCAACGCCGGCTAGTAAAAC 59.555 55.000 26.68 0.00 0.00 2.43
2293 2578 1.435577 CAACGCCGGCTAGTAAAACT 58.564 50.000 26.68 0.00 0.00 2.66
2294 2579 1.127951 CAACGCCGGCTAGTAAAACTG 59.872 52.381 26.68 7.01 0.00 3.16
2295 2580 0.604578 ACGCCGGCTAGTAAAACTGA 59.395 50.000 26.68 0.00 0.00 3.41
2296 2581 0.997196 CGCCGGCTAGTAAAACTGAC 59.003 55.000 26.68 0.00 0.00 3.51
2297 2582 1.670674 CGCCGGCTAGTAAAACTGACA 60.671 52.381 26.68 0.00 0.00 3.58
2298 2583 2.000447 GCCGGCTAGTAAAACTGACAG 59.000 52.381 22.15 0.00 0.00 3.51
2299 2584 2.618053 CCGGCTAGTAAAACTGACAGG 58.382 52.381 7.51 0.00 0.00 4.00
2300 2585 2.232941 CCGGCTAGTAAAACTGACAGGA 59.767 50.000 7.51 0.00 0.00 3.86
2301 2586 3.512680 CGGCTAGTAAAACTGACAGGAG 58.487 50.000 7.51 0.00 0.00 3.69
2302 2587 3.192844 CGGCTAGTAAAACTGACAGGAGA 59.807 47.826 7.51 0.00 0.00 3.71
2303 2588 4.142138 CGGCTAGTAAAACTGACAGGAGAT 60.142 45.833 7.51 0.00 0.00 2.75
2304 2589 5.067413 CGGCTAGTAAAACTGACAGGAGATA 59.933 44.000 7.51 0.00 0.00 1.98
2305 2590 6.239064 CGGCTAGTAAAACTGACAGGAGATAT 60.239 42.308 7.51 0.00 0.00 1.63
2306 2591 6.926272 GGCTAGTAAAACTGACAGGAGATATG 59.074 42.308 7.51 0.00 0.00 1.78
2307 2592 7.418025 GGCTAGTAAAACTGACAGGAGATATGT 60.418 40.741 7.51 0.00 0.00 2.29
2308 2593 7.436673 GCTAGTAAAACTGACAGGAGATATGTG 59.563 40.741 7.51 0.00 0.00 3.21
2309 2594 6.109359 AGTAAAACTGACAGGAGATATGTGC 58.891 40.000 7.51 0.00 0.00 4.57
2310 2595 4.558226 AAACTGACAGGAGATATGTGCA 57.442 40.909 7.51 0.00 0.00 4.57
2311 2596 4.558226 AACTGACAGGAGATATGTGCAA 57.442 40.909 7.51 0.00 0.00 4.08
2312 2597 4.767578 ACTGACAGGAGATATGTGCAAT 57.232 40.909 7.51 0.00 0.00 3.56
2313 2598 5.876651 ACTGACAGGAGATATGTGCAATA 57.123 39.130 7.51 0.00 0.00 1.90
2314 2599 5.851720 ACTGACAGGAGATATGTGCAATAG 58.148 41.667 7.51 0.00 0.00 1.73
2315 2600 5.600069 ACTGACAGGAGATATGTGCAATAGA 59.400 40.000 7.51 0.00 0.00 1.98
2316 2601 6.269538 ACTGACAGGAGATATGTGCAATAGAT 59.730 38.462 7.51 0.00 0.00 1.98
2317 2602 6.695429 TGACAGGAGATATGTGCAATAGATC 58.305 40.000 0.00 0.00 0.00 2.75
2318 2603 6.047511 ACAGGAGATATGTGCAATAGATCC 57.952 41.667 0.00 1.67 0.00 3.36
2319 2604 5.784390 ACAGGAGATATGTGCAATAGATCCT 59.216 40.000 13.25 13.25 35.04 3.24
2320 2605 6.956435 ACAGGAGATATGTGCAATAGATCCTA 59.044 38.462 15.97 0.00 32.97 2.94
2321 2606 7.123997 ACAGGAGATATGTGCAATAGATCCTAG 59.876 40.741 15.97 13.95 32.97 3.02
2322 2607 7.123997 CAGGAGATATGTGCAATAGATCCTAGT 59.876 40.741 15.97 0.00 32.97 2.57
2323 2608 7.677745 AGGAGATATGTGCAATAGATCCTAGTT 59.322 37.037 15.40 0.00 32.97 2.24
2324 2609 7.763528 GGAGATATGTGCAATAGATCCTAGTTG 59.236 40.741 0.00 0.00 0.00 3.16
2325 2610 7.102346 AGATATGTGCAATAGATCCTAGTTGC 58.898 38.462 12.39 12.39 45.27 4.17
2326 2611 3.808728 TGTGCAATAGATCCTAGTTGCC 58.191 45.455 15.11 9.61 44.64 4.52
2327 2612 3.455910 TGTGCAATAGATCCTAGTTGCCT 59.544 43.478 15.11 0.00 44.64 4.75
2328 2613 4.061596 GTGCAATAGATCCTAGTTGCCTC 58.938 47.826 15.11 8.10 44.64 4.70
2329 2614 3.071602 TGCAATAGATCCTAGTTGCCTCC 59.928 47.826 15.11 0.00 44.64 4.30
2330 2615 3.326297 GCAATAGATCCTAGTTGCCTCCT 59.674 47.826 9.53 0.00 40.66 3.69
2331 2616 4.562552 GCAATAGATCCTAGTTGCCTCCTC 60.563 50.000 9.53 0.00 40.66 3.71
2332 2617 2.856760 AGATCCTAGTTGCCTCCTCA 57.143 50.000 0.00 0.00 0.00 3.86
2333 2618 3.121929 AGATCCTAGTTGCCTCCTCAA 57.878 47.619 0.00 0.00 0.00 3.02
2334 2619 3.454858 AGATCCTAGTTGCCTCCTCAAA 58.545 45.455 0.00 0.00 0.00 2.69
2335 2620 3.846588 AGATCCTAGTTGCCTCCTCAAAA 59.153 43.478 0.00 0.00 0.00 2.44
2336 2621 3.418684 TCCTAGTTGCCTCCTCAAAAC 57.581 47.619 0.00 0.00 0.00 2.43
2337 2622 2.708861 TCCTAGTTGCCTCCTCAAAACA 59.291 45.455 0.00 0.00 0.00 2.83
2338 2623 3.330701 TCCTAGTTGCCTCCTCAAAACAT 59.669 43.478 0.00 0.00 0.00 2.71
2339 2624 4.534500 TCCTAGTTGCCTCCTCAAAACATA 59.466 41.667 0.00 0.00 0.00 2.29
2340 2625 4.878397 CCTAGTTGCCTCCTCAAAACATAG 59.122 45.833 0.00 0.00 0.00 2.23
2341 2626 3.690460 AGTTGCCTCCTCAAAACATAGG 58.310 45.455 0.00 0.00 0.00 2.57
2342 2627 2.755103 GTTGCCTCCTCAAAACATAGGG 59.245 50.000 0.00 0.00 33.40 3.53
2343 2628 2.274542 TGCCTCCTCAAAACATAGGGA 58.725 47.619 0.00 0.00 33.40 4.20
2344 2629 2.026262 TGCCTCCTCAAAACATAGGGAC 60.026 50.000 0.00 0.00 33.40 4.46
2345 2630 2.239907 GCCTCCTCAAAACATAGGGACT 59.760 50.000 0.00 0.00 46.37 3.85
2346 2631 3.308473 GCCTCCTCAAAACATAGGGACTT 60.308 47.826 0.00 0.00 41.75 3.01
2347 2632 4.265073 CCTCCTCAAAACATAGGGACTTG 58.735 47.826 0.00 0.00 41.75 3.16
2348 2633 4.263506 CCTCCTCAAAACATAGGGACTTGT 60.264 45.833 0.00 0.00 41.75 3.16
2349 2634 5.045869 CCTCCTCAAAACATAGGGACTTGTA 60.046 44.000 0.00 0.00 41.75 2.41
2350 2635 6.049955 TCCTCAAAACATAGGGACTTGTAG 57.950 41.667 0.00 0.00 41.75 2.74
2351 2636 5.783360 TCCTCAAAACATAGGGACTTGTAGA 59.217 40.000 0.00 0.00 41.75 2.59
2352 2637 6.271391 TCCTCAAAACATAGGGACTTGTAGAA 59.729 38.462 0.00 0.00 41.75 2.10
2353 2638 7.037586 TCCTCAAAACATAGGGACTTGTAGAAT 60.038 37.037 0.00 0.00 41.75 2.40
2354 2639 7.066284 CCTCAAAACATAGGGACTTGTAGAATG 59.934 40.741 0.00 0.00 41.75 2.67
2355 2640 7.685481 TCAAAACATAGGGACTTGTAGAATGA 58.315 34.615 0.00 0.00 41.75 2.57
2356 2641 8.328758 TCAAAACATAGGGACTTGTAGAATGAT 58.671 33.333 0.00 0.00 41.75 2.45
2357 2642 8.400947 CAAAACATAGGGACTTGTAGAATGATG 58.599 37.037 0.00 0.00 41.75 3.07
2358 2643 6.179906 ACATAGGGACTTGTAGAATGATGG 57.820 41.667 0.00 0.00 41.75 3.51
2359 2644 5.905331 ACATAGGGACTTGTAGAATGATGGA 59.095 40.000 0.00 0.00 41.75 3.41
2360 2645 6.560304 ACATAGGGACTTGTAGAATGATGGAT 59.440 38.462 0.00 0.00 41.75 3.41
2361 2646 7.734865 ACATAGGGACTTGTAGAATGATGGATA 59.265 37.037 0.00 0.00 41.75 2.59
2362 2647 8.597167 CATAGGGACTTGTAGAATGATGGATAA 58.403 37.037 0.00 0.00 41.75 1.75
2363 2648 7.451731 AGGGACTTGTAGAATGATGGATAAA 57.548 36.000 0.00 0.00 27.25 1.40
2364 2649 7.872138 AGGGACTTGTAGAATGATGGATAAAA 58.128 34.615 0.00 0.00 27.25 1.52
2365 2650 7.775561 AGGGACTTGTAGAATGATGGATAAAAC 59.224 37.037 0.00 0.00 27.25 2.43
2366 2651 7.556275 GGGACTTGTAGAATGATGGATAAAACA 59.444 37.037 0.00 0.00 0.00 2.83
2367 2652 8.616076 GGACTTGTAGAATGATGGATAAAACAG 58.384 37.037 0.00 0.00 0.00 3.16
2368 2653 9.167311 GACTTGTAGAATGATGGATAAAACAGT 57.833 33.333 0.00 0.00 0.00 3.55
2369 2654 9.520515 ACTTGTAGAATGATGGATAAAACAGTT 57.479 29.630 0.00 0.00 0.00 3.16
2387 2672 8.986477 AAACAGTTTTATCTTAATCATGCCAC 57.014 30.769 0.00 0.00 0.00 5.01
2388 2673 7.701539 ACAGTTTTATCTTAATCATGCCACA 57.298 32.000 0.00 0.00 0.00 4.17
2389 2674 8.297470 ACAGTTTTATCTTAATCATGCCACAT 57.703 30.769 0.00 0.00 0.00 3.21
2390 2675 9.407380 ACAGTTTTATCTTAATCATGCCACATA 57.593 29.630 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.959721 GCCCTCTATAATAAGACCAATTTGATA 57.040 33.333 0.00 0.00 0.00 2.15
47 48 8.673251 AGCCCTCTATAATAAGACCAATTTGAT 58.327 33.333 0.00 0.00 0.00 2.57
48 49 8.045720 AGCCCTCTATAATAAGACCAATTTGA 57.954 34.615 0.00 0.00 0.00 2.69
49 50 8.697507 AAGCCCTCTATAATAAGACCAATTTG 57.302 34.615 0.00 0.00 0.00 2.32
52 53 8.606830 CCTTAAGCCCTCTATAATAAGACCAAT 58.393 37.037 0.00 0.00 0.00 3.16
53 54 7.474364 GCCTTAAGCCCTCTATAATAAGACCAA 60.474 40.741 0.00 0.00 34.35 3.67
54 55 6.013639 GCCTTAAGCCCTCTATAATAAGACCA 60.014 42.308 0.00 0.00 34.35 4.02
55 56 6.213802 AGCCTTAAGCCCTCTATAATAAGACC 59.786 42.308 0.00 0.00 45.47 3.85
56 57 7.247456 AGCCTTAAGCCCTCTATAATAAGAC 57.753 40.000 0.00 0.00 45.47 3.01
57 58 7.620094 CCTAGCCTTAAGCCCTCTATAATAAGA 59.380 40.741 0.00 0.00 45.47 2.10
58 59 7.620094 TCCTAGCCTTAAGCCCTCTATAATAAG 59.380 40.741 0.00 0.00 45.47 1.73
59 60 7.484744 TCCTAGCCTTAAGCCCTCTATAATAA 58.515 38.462 0.00 0.00 45.47 1.40
60 61 7.052901 TCCTAGCCTTAAGCCCTCTATAATA 57.947 40.000 0.00 0.00 45.47 0.98
61 62 5.916806 TCCTAGCCTTAAGCCCTCTATAAT 58.083 41.667 0.00 0.00 45.47 1.28
62 63 5.349738 TCCTAGCCTTAAGCCCTCTATAA 57.650 43.478 0.00 0.00 45.47 0.98
63 64 5.349738 TTCCTAGCCTTAAGCCCTCTATA 57.650 43.478 0.00 0.00 45.47 1.31
64 65 3.925261 TCCTAGCCTTAAGCCCTCTAT 57.075 47.619 0.00 0.00 45.47 1.98
65 66 3.700863 TTCCTAGCCTTAAGCCCTCTA 57.299 47.619 0.00 0.00 45.47 2.43
66 67 2.570386 TTCCTAGCCTTAAGCCCTCT 57.430 50.000 0.00 0.00 45.47 3.69
67 68 3.136626 TGAATTCCTAGCCTTAAGCCCTC 59.863 47.826 2.27 0.00 45.47 4.30
68 69 3.123273 TGAATTCCTAGCCTTAAGCCCT 58.877 45.455 2.27 0.00 45.47 5.19
69 70 3.577805 TGAATTCCTAGCCTTAAGCCC 57.422 47.619 2.27 0.00 45.47 5.19
70 71 7.767250 ATAATTGAATTCCTAGCCTTAAGCC 57.233 36.000 2.27 0.00 45.47 4.35
143 144 9.927668 CCCTTTTATTTCATCTTTGCTCTTTTA 57.072 29.630 0.00 0.00 0.00 1.52
144 145 8.432013 ACCCTTTTATTTCATCTTTGCTCTTTT 58.568 29.630 0.00 0.00 0.00 2.27
145 146 7.966812 ACCCTTTTATTTCATCTTTGCTCTTT 58.033 30.769 0.00 0.00 0.00 2.52
146 147 7.544804 ACCCTTTTATTTCATCTTTGCTCTT 57.455 32.000 0.00 0.00 0.00 2.85
147 148 7.669722 TGTACCCTTTTATTTCATCTTTGCTCT 59.330 33.333 0.00 0.00 0.00 4.09
148 149 7.826690 TGTACCCTTTTATTTCATCTTTGCTC 58.173 34.615 0.00 0.00 0.00 4.26
149 150 7.775053 TGTACCCTTTTATTTCATCTTTGCT 57.225 32.000 0.00 0.00 0.00 3.91
150 151 9.435688 AAATGTACCCTTTTATTTCATCTTTGC 57.564 29.630 0.00 0.00 0.00 3.68
157 158 9.357161 ACACACTAAATGTACCCTTTTATTTCA 57.643 29.630 0.00 0.00 40.64 2.69
162 163 9.715121 CTCTTACACACTAAATGTACCCTTTTA 57.285 33.333 0.00 0.00 40.64 1.52
163 164 8.434392 TCTCTTACACACTAAATGTACCCTTTT 58.566 33.333 0.00 0.00 40.64 2.27
164 165 7.970102 TCTCTTACACACTAAATGTACCCTTT 58.030 34.615 0.00 0.00 40.64 3.11
165 166 7.549147 TCTCTTACACACTAAATGTACCCTT 57.451 36.000 0.00 0.00 40.64 3.95
166 167 7.453752 TCTTCTCTTACACACTAAATGTACCCT 59.546 37.037 0.00 0.00 40.64 4.34
167 168 7.609056 TCTTCTCTTACACACTAAATGTACCC 58.391 38.462 0.00 0.00 40.64 3.69
168 169 8.521176 TCTCTTCTCTTACACACTAAATGTACC 58.479 37.037 0.00 0.00 40.64 3.34
169 170 9.562583 CTCTCTTCTCTTACACACTAAATGTAC 57.437 37.037 0.00 0.00 40.64 2.90
170 171 9.516546 TCTCTCTTCTCTTACACACTAAATGTA 57.483 33.333 0.00 0.00 40.64 2.29
171 172 8.410673 TCTCTCTTCTCTTACACACTAAATGT 57.589 34.615 0.00 0.00 44.81 2.71
172 173 8.735315 TCTCTCTCTTCTCTTACACACTAAATG 58.265 37.037 0.00 0.00 0.00 2.32
173 174 8.736244 GTCTCTCTCTTCTCTTACACACTAAAT 58.264 37.037 0.00 0.00 0.00 1.40
174 175 7.940137 AGTCTCTCTCTTCTCTTACACACTAAA 59.060 37.037 0.00 0.00 0.00 1.85
175 176 7.455058 AGTCTCTCTCTTCTCTTACACACTAA 58.545 38.462 0.00 0.00 0.00 2.24
176 177 7.011499 AGTCTCTCTCTTCTCTTACACACTA 57.989 40.000 0.00 0.00 0.00 2.74
177 178 5.876357 AGTCTCTCTCTTCTCTTACACACT 58.124 41.667 0.00 0.00 0.00 3.55
178 179 6.569179 AAGTCTCTCTCTTCTCTTACACAC 57.431 41.667 0.00 0.00 0.00 3.82
179 180 6.773200 TCAAAGTCTCTCTCTTCTCTTACACA 59.227 38.462 0.00 0.00 0.00 3.72
180 181 7.081976 GTCAAAGTCTCTCTCTTCTCTTACAC 58.918 42.308 0.00 0.00 0.00 2.90
181 182 6.773200 TGTCAAAGTCTCTCTCTTCTCTTACA 59.227 38.462 0.00 0.00 0.00 2.41
182 183 7.209471 TGTCAAAGTCTCTCTCTTCTCTTAC 57.791 40.000 0.00 0.00 0.00 2.34
183 184 7.504238 AGTTGTCAAAGTCTCTCTCTTCTCTTA 59.496 37.037 0.00 0.00 0.00 2.10
184 185 6.323739 AGTTGTCAAAGTCTCTCTCTTCTCTT 59.676 38.462 0.00 0.00 0.00 2.85
185 186 5.833131 AGTTGTCAAAGTCTCTCTCTTCTCT 59.167 40.000 0.00 0.00 0.00 3.10
186 187 6.084326 AGTTGTCAAAGTCTCTCTCTTCTC 57.916 41.667 0.00 0.00 0.00 2.87
187 188 6.478512 AAGTTGTCAAAGTCTCTCTCTTCT 57.521 37.500 0.00 0.00 0.00 2.85
188 189 7.254624 GGAAAAGTTGTCAAAGTCTCTCTCTTC 60.255 40.741 0.00 0.00 0.00 2.87
189 190 6.540551 GGAAAAGTTGTCAAAGTCTCTCTCTT 59.459 38.462 0.00 0.00 0.00 2.85
190 191 6.052360 GGAAAAGTTGTCAAAGTCTCTCTCT 58.948 40.000 0.00 0.00 0.00 3.10
191 192 6.018343 CAGGAAAAGTTGTCAAAGTCTCTCTC 60.018 42.308 0.00 0.00 0.00 3.20
192 193 5.819901 CAGGAAAAGTTGTCAAAGTCTCTCT 59.180 40.000 0.00 0.00 0.00 3.10
193 194 5.504830 GCAGGAAAAGTTGTCAAAGTCTCTC 60.505 44.000 0.00 0.00 0.00 3.20
194 195 4.336713 GCAGGAAAAGTTGTCAAAGTCTCT 59.663 41.667 0.00 0.00 0.00 3.10
195 196 4.498177 GGCAGGAAAAGTTGTCAAAGTCTC 60.498 45.833 0.00 0.00 0.00 3.36
196 197 3.381590 GGCAGGAAAAGTTGTCAAAGTCT 59.618 43.478 0.00 0.00 0.00 3.24
197 198 3.130340 TGGCAGGAAAAGTTGTCAAAGTC 59.870 43.478 0.00 0.00 0.00 3.01
198 199 3.096092 TGGCAGGAAAAGTTGTCAAAGT 58.904 40.909 0.00 0.00 0.00 2.66
199 200 3.799281 TGGCAGGAAAAGTTGTCAAAG 57.201 42.857 0.00 0.00 0.00 2.77
200 201 3.740764 GCATGGCAGGAAAAGTTGTCAAA 60.741 43.478 1.99 0.00 31.98 2.69
201 202 2.224018 GCATGGCAGGAAAAGTTGTCAA 60.224 45.455 1.99 0.00 31.98 3.18
202 203 1.340889 GCATGGCAGGAAAAGTTGTCA 59.659 47.619 1.99 0.00 32.87 3.58
203 204 1.340889 TGCATGGCAGGAAAAGTTGTC 59.659 47.619 1.99 0.00 33.32 3.18
204 205 1.412079 TGCATGGCAGGAAAAGTTGT 58.588 45.000 1.99 0.00 33.32 3.32
205 206 2.343101 CATGCATGGCAGGAAAAGTTG 58.657 47.619 19.40 0.00 43.36 3.16
206 207 1.338389 GCATGCATGGCAGGAAAAGTT 60.338 47.619 27.34 0.00 43.36 2.66
207 208 0.248289 GCATGCATGGCAGGAAAAGT 59.752 50.000 27.34 0.00 43.36 2.66
208 209 0.248012 TGCATGCATGGCAGGAAAAG 59.752 50.000 27.34 0.00 43.36 2.27
209 210 0.906066 ATGCATGCATGGCAGGAAAA 59.094 45.000 31.74 0.00 43.36 2.29
210 211 0.906066 AATGCATGCATGGCAGGAAA 59.094 45.000 32.79 1.15 43.36 3.13
211 212 0.176910 CAATGCATGCATGGCAGGAA 59.823 50.000 32.79 2.00 43.36 3.36
212 213 0.973496 ACAATGCATGCATGGCAGGA 60.973 50.000 32.79 2.83 43.36 3.86
213 214 0.809636 CACAATGCATGCATGGCAGG 60.810 55.000 32.79 18.80 45.68 4.85
214 215 0.809636 CCACAATGCATGCATGGCAG 60.810 55.000 32.79 23.91 45.68 4.85
215 216 1.219393 CCACAATGCATGCATGGCA 59.781 52.632 32.79 23.66 46.66 4.92
216 217 1.522806 CCCACAATGCATGCATGGC 60.523 57.895 32.79 19.18 36.68 4.40
217 218 1.145156 CCCCACAATGCATGCATGG 59.855 57.895 32.79 31.21 36.68 3.66
218 219 1.145156 CCCCCACAATGCATGCATG 59.855 57.895 32.79 25.94 36.68 4.06
219 220 2.737881 GCCCCCACAATGCATGCAT 61.738 57.895 27.46 27.46 38.46 3.96
220 221 3.392243 GCCCCCACAATGCATGCA 61.392 61.111 25.04 25.04 0.00 3.96
221 222 4.165486 GGCCCCCACAATGCATGC 62.165 66.667 11.82 11.82 0.00 4.06
222 223 2.684294 TGGCCCCCACAATGCATG 60.684 61.111 0.00 0.00 0.00 4.06
223 224 2.364579 CTGGCCCCCACAATGCAT 60.365 61.111 0.00 0.00 0.00 3.96
224 225 4.700448 CCTGGCCCCCACAATGCA 62.700 66.667 0.00 0.00 0.00 3.96
225 226 4.380945 TCCTGGCCCCCACAATGC 62.381 66.667 0.00 0.00 0.00 3.56
226 227 2.043652 CTCCTGGCCCCCACAATG 60.044 66.667 0.00 0.00 0.00 2.82
227 228 4.066139 GCTCCTGGCCCCCACAAT 62.066 66.667 0.00 0.00 34.27 2.71
236 237 0.037232 GACCATATACGGCTCCTGGC 60.037 60.000 0.00 0.00 40.90 4.85
237 238 1.546476 GAGACCATATACGGCTCCTGG 59.454 57.143 0.00 0.00 0.00 4.45
238 239 1.546476 GGAGACCATATACGGCTCCTG 59.454 57.143 16.39 0.00 41.95 3.86
239 240 1.429687 AGGAGACCATATACGGCTCCT 59.570 52.381 19.08 19.08 46.32 3.69
240 241 1.926108 AGGAGACCATATACGGCTCC 58.074 55.000 16.08 16.08 43.83 4.70
241 242 4.822896 CCTATAGGAGACCATATACGGCTC 59.177 50.000 14.11 1.98 37.39 4.70
242 243 4.794334 CCTATAGGAGACCATATACGGCT 58.206 47.826 14.11 0.00 37.39 5.52
243 244 3.318557 GCCTATAGGAGACCATATACGGC 59.681 52.174 23.61 0.00 37.39 5.68
244 245 4.794334 AGCCTATAGGAGACCATATACGG 58.206 47.826 23.61 0.00 37.39 4.02
245 246 5.067936 CCAAGCCTATAGGAGACCATATACG 59.932 48.000 23.61 0.00 37.39 3.06
246 247 5.958987 ACCAAGCCTATAGGAGACCATATAC 59.041 44.000 23.61 0.22 37.39 1.47
247 248 6.167061 ACCAAGCCTATAGGAGACCATATA 57.833 41.667 23.61 0.00 37.39 0.86
248 249 5.029973 ACCAAGCCTATAGGAGACCATAT 57.970 43.478 23.61 0.00 37.39 1.78
249 250 4.487282 ACCAAGCCTATAGGAGACCATA 57.513 45.455 23.61 0.00 37.39 2.74
250 251 3.352611 ACCAAGCCTATAGGAGACCAT 57.647 47.619 23.61 0.00 37.39 3.55
251 252 2.868964 ACCAAGCCTATAGGAGACCA 57.131 50.000 23.61 0.00 37.39 4.02
252 253 4.417437 TCATACCAAGCCTATAGGAGACC 58.583 47.826 23.61 4.44 37.39 3.85
253 254 6.420913 TTTCATACCAAGCCTATAGGAGAC 57.579 41.667 23.61 4.82 37.39 3.36
254 255 6.385759 TGTTTTCATACCAAGCCTATAGGAGA 59.614 38.462 23.61 3.67 37.39 3.71
255 256 6.591935 TGTTTTCATACCAAGCCTATAGGAG 58.408 40.000 23.61 10.77 37.39 3.69
256 257 6.569127 TGTTTTCATACCAAGCCTATAGGA 57.431 37.500 23.61 0.00 37.39 2.94
257 258 6.039382 GGTTGTTTTCATACCAAGCCTATAGG 59.961 42.308 15.01 15.01 33.97 2.57
258 259 6.601613 TGGTTGTTTTCATACCAAGCCTATAG 59.398 38.462 0.00 0.00 37.72 1.31
259 260 6.486056 TGGTTGTTTTCATACCAAGCCTATA 58.514 36.000 0.00 0.00 37.72 1.31
260 261 5.329399 TGGTTGTTTTCATACCAAGCCTAT 58.671 37.500 0.00 0.00 37.72 2.57
261 262 4.730966 TGGTTGTTTTCATACCAAGCCTA 58.269 39.130 0.00 0.00 37.72 3.93
262 263 3.571590 TGGTTGTTTTCATACCAAGCCT 58.428 40.909 0.00 0.00 37.72 4.58
263 264 4.329462 TTGGTTGTTTTCATACCAAGCC 57.671 40.909 0.00 0.00 41.35 4.35
264 265 8.546597 AATTATTGGTTGTTTTCATACCAAGC 57.453 30.769 11.11 0.00 44.92 4.01
282 283 4.038642 CGGGGGTCCACCAATTAATTATTG 59.961 45.833 11.81 1.18 42.73 1.90
283 284 4.219919 CGGGGGTCCACCAATTAATTATT 58.780 43.478 11.81 0.00 42.91 1.40
284 285 3.839778 CGGGGGTCCACCAATTAATTAT 58.160 45.455 11.81 0.00 42.91 1.28
285 286 2.687314 GCGGGGGTCCACCAATTAATTA 60.687 50.000 11.81 0.00 42.91 1.40
286 287 1.962887 GCGGGGGTCCACCAATTAATT 60.963 52.381 11.81 0.00 42.91 1.40
287 288 0.396556 GCGGGGGTCCACCAATTAAT 60.397 55.000 11.81 0.00 42.91 1.40
288 289 1.000646 GCGGGGGTCCACCAATTAA 60.001 57.895 11.81 0.00 42.91 1.40
289 290 2.232108 TGCGGGGGTCCACCAATTA 61.232 57.895 11.81 0.00 42.91 1.40
290 291 3.585428 TGCGGGGGTCCACCAATT 61.585 61.111 11.81 0.00 42.91 2.32
291 292 4.360405 GTGCGGGGGTCCACCAAT 62.360 66.667 11.81 0.00 42.91 3.16
295 296 4.404098 ATTCGTGCGGGGGTCCAC 62.404 66.667 0.00 0.00 0.00 4.02
296 297 4.090588 GATTCGTGCGGGGGTCCA 62.091 66.667 0.00 0.00 0.00 4.02
297 298 3.400599 ATGATTCGTGCGGGGGTCC 62.401 63.158 0.00 0.00 0.00 4.46
298 299 2.180204 CATGATTCGTGCGGGGGTC 61.180 63.158 0.00 0.00 0.00 4.46
299 300 1.983119 ATCATGATTCGTGCGGGGGT 61.983 55.000 1.18 0.00 0.00 4.95
300 301 1.227943 ATCATGATTCGTGCGGGGG 60.228 57.895 1.18 0.00 0.00 5.40
301 302 1.944035 CATCATGATTCGTGCGGGG 59.056 57.895 5.16 0.00 0.00 5.73
302 303 1.280746 GCATCATGATTCGTGCGGG 59.719 57.895 5.16 0.00 0.00 6.13
303 304 0.589708 ATGCATCATGATTCGTGCGG 59.410 50.000 5.16 0.00 40.34 5.69
304 305 3.120442 ACATATGCATCATGATTCGTGCG 60.120 43.478 5.16 1.35 40.34 5.34
305 306 4.156182 CACATATGCATCATGATTCGTGC 58.844 43.478 5.16 8.82 38.05 5.34
306 307 4.453136 TCCACATATGCATCATGATTCGTG 59.547 41.667 5.16 4.94 0.00 4.35
307 308 4.644498 TCCACATATGCATCATGATTCGT 58.356 39.130 5.16 5.29 0.00 3.85
308 309 5.353123 TCATCCACATATGCATCATGATTCG 59.647 40.000 5.16 0.00 0.00 3.34
309 310 6.753107 TCATCCACATATGCATCATGATTC 57.247 37.500 5.16 1.09 0.00 2.52
310 311 6.096846 CCATCATCCACATATGCATCATGATT 59.903 38.462 5.16 0.00 29.05 2.57
311 312 5.594317 CCATCATCCACATATGCATCATGAT 59.406 40.000 0.19 1.18 31.16 2.45
312 313 4.947388 CCATCATCCACATATGCATCATGA 59.053 41.667 0.19 0.00 0.00 3.07
313 314 4.947388 TCCATCATCCACATATGCATCATG 59.053 41.667 0.19 8.42 0.00 3.07
314 315 5.187621 TCCATCATCCACATATGCATCAT 57.812 39.130 0.19 0.00 0.00 2.45
315 316 4.644163 TCCATCATCCACATATGCATCA 57.356 40.909 0.19 0.00 0.00 3.07
316 317 4.202020 GCATCCATCATCCACATATGCATC 60.202 45.833 0.19 0.00 38.44 3.91
317 318 3.699538 GCATCCATCATCCACATATGCAT 59.300 43.478 3.79 3.79 38.44 3.96
318 319 3.086282 GCATCCATCATCCACATATGCA 58.914 45.455 1.58 0.00 38.44 3.96
319 320 3.353557 AGCATCCATCATCCACATATGC 58.646 45.455 1.58 0.00 38.76 3.14
320 321 5.007682 TGAAGCATCCATCATCCACATATG 58.992 41.667 0.00 0.00 0.00 1.78
321 322 5.008331 GTGAAGCATCCATCATCCACATAT 58.992 41.667 0.00 0.00 0.00 1.78
322 323 4.392047 GTGAAGCATCCATCATCCACATA 58.608 43.478 0.00 0.00 0.00 2.29
323 324 3.220110 GTGAAGCATCCATCATCCACAT 58.780 45.455 0.00 0.00 0.00 3.21
324 325 2.646930 GTGAAGCATCCATCATCCACA 58.353 47.619 0.00 0.00 0.00 4.17
325 326 1.952296 GGTGAAGCATCCATCATCCAC 59.048 52.381 0.00 0.00 0.00 4.02
326 327 1.475571 CGGTGAAGCATCCATCATCCA 60.476 52.381 0.00 0.00 0.00 3.41
327 328 1.233019 CGGTGAAGCATCCATCATCC 58.767 55.000 0.00 0.00 0.00 3.51
328 329 1.233019 CCGGTGAAGCATCCATCATC 58.767 55.000 0.00 0.00 0.00 2.92
329 330 0.548031 ACCGGTGAAGCATCCATCAT 59.452 50.000 6.12 0.00 0.00 2.45
330 331 1.138859 CTACCGGTGAAGCATCCATCA 59.861 52.381 19.93 0.00 0.00 3.07
331 332 1.871080 CTACCGGTGAAGCATCCATC 58.129 55.000 19.93 0.00 0.00 3.51
332 333 0.179045 GCTACCGGTGAAGCATCCAT 60.179 55.000 21.90 0.00 38.63 3.41
333 334 1.220749 GCTACCGGTGAAGCATCCA 59.779 57.895 21.90 0.00 38.63 3.41
334 335 0.530870 GAGCTACCGGTGAAGCATCC 60.531 60.000 26.97 14.11 41.32 3.51
335 336 0.530870 GGAGCTACCGGTGAAGCATC 60.531 60.000 26.97 20.30 41.32 3.91
336 337 1.522569 GGAGCTACCGGTGAAGCAT 59.477 57.895 26.97 14.49 41.32 3.79
337 338 2.656069 GGGAGCTACCGGTGAAGCA 61.656 63.158 26.97 2.89 41.32 3.91
338 339 1.900545 AAGGGAGCTACCGGTGAAGC 61.901 60.000 19.93 19.83 40.11 3.86
339 340 0.108138 CAAGGGAGCTACCGGTGAAG 60.108 60.000 19.93 8.99 40.11 3.02
340 341 0.543410 TCAAGGGAGCTACCGGTGAA 60.543 55.000 19.93 0.00 40.11 3.18
341 342 1.077805 TCAAGGGAGCTACCGGTGA 59.922 57.895 19.93 17.87 40.11 4.02
342 343 1.218316 GTCAAGGGAGCTACCGGTG 59.782 63.158 19.93 12.47 40.11 4.94
343 344 1.988406 GGTCAAGGGAGCTACCGGT 60.988 63.158 13.98 13.98 38.50 5.28
344 345 2.901042 GGTCAAGGGAGCTACCGG 59.099 66.667 10.07 6.31 38.50 5.28
346 347 0.685458 TACCGGTCAAGGGAGCTACC 60.685 60.000 12.40 6.98 39.38 3.18
347 348 1.188863 TTACCGGTCAAGGGAGCTAC 58.811 55.000 12.40 0.00 39.38 3.58
348 349 1.941377 TTTACCGGTCAAGGGAGCTA 58.059 50.000 12.40 0.00 39.38 3.32
349 350 1.003233 CTTTTACCGGTCAAGGGAGCT 59.997 52.381 12.40 0.00 39.38 4.09
350 351 1.002773 TCTTTTACCGGTCAAGGGAGC 59.997 52.381 12.40 0.00 38.17 4.70
351 352 2.565834 TCTCTTTTACCGGTCAAGGGAG 59.434 50.000 20.40 19.66 35.02 4.30
352 353 2.301009 GTCTCTTTTACCGGTCAAGGGA 59.699 50.000 20.40 20.40 35.02 4.20
353 354 2.302157 AGTCTCTTTTACCGGTCAAGGG 59.698 50.000 12.40 15.47 35.02 3.95
354 355 3.679824 AGTCTCTTTTACCGGTCAAGG 57.320 47.619 12.40 7.48 37.30 3.61
355 356 4.319549 GCAAAGTCTCTTTTACCGGTCAAG 60.320 45.833 12.40 15.46 0.00 3.02
356 357 3.562557 GCAAAGTCTCTTTTACCGGTCAA 59.437 43.478 12.40 2.64 0.00 3.18
357 358 3.135994 GCAAAGTCTCTTTTACCGGTCA 58.864 45.455 12.40 0.00 0.00 4.02
358 359 2.157085 CGCAAAGTCTCTTTTACCGGTC 59.843 50.000 12.40 0.00 0.00 4.79
359 360 2.140717 CGCAAAGTCTCTTTTACCGGT 58.859 47.619 13.98 13.98 0.00 5.28
360 361 1.136057 GCGCAAAGTCTCTTTTACCGG 60.136 52.381 0.30 0.00 0.00 5.28
361 362 1.798813 AGCGCAAAGTCTCTTTTACCG 59.201 47.619 11.47 0.00 0.00 4.02
362 363 2.548480 ACAGCGCAAAGTCTCTTTTACC 59.452 45.455 11.47 0.00 0.00 2.85
363 364 3.879932 ACAGCGCAAAGTCTCTTTTAC 57.120 42.857 11.47 0.00 0.00 2.01
364 365 3.250040 GGAACAGCGCAAAGTCTCTTTTA 59.750 43.478 11.47 0.00 0.00 1.52
365 366 2.033424 GGAACAGCGCAAAGTCTCTTTT 59.967 45.455 11.47 0.00 0.00 2.27
366 367 1.604278 GGAACAGCGCAAAGTCTCTTT 59.396 47.619 11.47 0.00 0.00 2.52
367 368 1.202698 AGGAACAGCGCAAAGTCTCTT 60.203 47.619 11.47 0.18 0.00 2.85
368 369 0.394565 AGGAACAGCGCAAAGTCTCT 59.605 50.000 11.47 3.76 0.00 3.10
369 370 0.793250 GAGGAACAGCGCAAAGTCTC 59.207 55.000 11.47 7.26 0.00 3.36
370 371 0.603975 GGAGGAACAGCGCAAAGTCT 60.604 55.000 11.47 0.44 0.00 3.24
371 372 1.578206 GGGAGGAACAGCGCAAAGTC 61.578 60.000 11.47 0.37 0.00 3.01
372 373 1.600916 GGGAGGAACAGCGCAAAGT 60.601 57.895 11.47 1.42 0.00 2.66
377 378 2.435059 GACTGGGAGGAACAGCGC 60.435 66.667 0.00 0.00 39.55 5.92
379 380 1.376553 GCAGACTGGGAGGAACAGC 60.377 63.158 4.26 0.00 39.55 4.40
454 467 1.142097 GAGCACGTAGGGAAGAGGC 59.858 63.158 0.00 0.00 0.00 4.70
455 468 1.433879 CGAGCACGTAGGGAAGAGG 59.566 63.158 0.00 0.00 34.56 3.69
787 811 2.002127 CGATGCAGAAGACGAAGGC 58.998 57.895 0.00 0.00 0.00 4.35
788 812 1.424493 GGCGATGCAGAAGACGAAGG 61.424 60.000 0.00 0.00 0.00 3.46
789 813 0.459237 AGGCGATGCAGAAGACGAAG 60.459 55.000 0.00 0.00 0.00 3.79
790 814 0.458543 GAGGCGATGCAGAAGACGAA 60.459 55.000 0.00 0.00 0.00 3.85
791 815 1.139734 GAGGCGATGCAGAAGACGA 59.860 57.895 0.00 0.00 0.00 4.20
802 826 1.075970 TGCAGTAGAGGGAGGCGAT 60.076 57.895 0.00 0.00 0.00 4.58
893 917 2.637383 GCGGAGAGGAGGAACGTGT 61.637 63.158 0.00 0.00 0.00 4.49
1204 1252 2.668212 CCGGAAAGCGAGCACCAA 60.668 61.111 0.00 0.00 0.00 3.67
1210 1258 2.510238 CAGAGCCCGGAAAGCGAG 60.510 66.667 0.73 0.00 34.64 5.03
1212 1260 4.394712 ACCAGAGCCCGGAAAGCG 62.395 66.667 0.73 0.00 34.64 4.68
1220 1268 4.394712 CGTCCACCACCAGAGCCC 62.395 72.222 0.00 0.00 0.00 5.19
1341 1389 2.031157 GTGGTTCTTGCACACCATGTAC 60.031 50.000 13.41 0.00 44.98 2.90
1450 1507 2.280835 AGAGTCGCTGGAATCTGCA 58.719 52.632 0.00 0.00 45.23 4.41
1463 1520 0.179113 GCAGCTGGCTAGTCAGAGTC 60.179 60.000 28.34 10.36 40.25 3.36
1476 1533 2.104859 CGTGGACAGGATGCAGCTG 61.105 63.158 10.11 10.11 42.53 4.24
1497 1556 3.071874 TCTTCAAGTTGCTACCATGGG 57.928 47.619 18.09 0.00 0.00 4.00
1532 1595 8.956533 ACTTACTACTACTAAGCTACTGTACC 57.043 38.462 0.00 0.00 0.00 3.34
1585 1772 1.965083 AATTCACGAGTCACGACGAG 58.035 50.000 0.00 0.00 45.77 4.18
1593 1789 9.249457 TGATAATCAGACATAAATTCACGAGTC 57.751 33.333 0.00 0.00 0.00 3.36
1594 1790 9.035607 GTGATAATCAGACATAAATTCACGAGT 57.964 33.333 0.00 0.00 0.00 4.18
1595 1791 9.254133 AGTGATAATCAGACATAAATTCACGAG 57.746 33.333 0.00 0.00 0.00 4.18
1596 1792 9.034544 CAGTGATAATCAGACATAAATTCACGA 57.965 33.333 0.00 0.00 0.00 4.35
1597 1793 7.795734 GCAGTGATAATCAGACATAAATTCACG 59.204 37.037 0.00 0.00 0.00 4.35
1598 1794 8.615211 TGCAGTGATAATCAGACATAAATTCAC 58.385 33.333 0.00 0.00 0.00 3.18
1599 1795 8.615211 GTGCAGTGATAATCAGACATAAATTCA 58.385 33.333 0.00 0.00 0.00 2.57
1602 1798 6.203530 CGGTGCAGTGATAATCAGACATAAAT 59.796 38.462 0.00 0.00 0.00 1.40
1631 1827 6.407475 TCACACATATATAATCGCATGCAC 57.593 37.500 19.57 0.00 0.00 4.57
1639 1835 7.896811 TCACAGACCCTCACACATATATAATC 58.103 38.462 0.00 0.00 0.00 1.75
1640 1836 7.730332 TCTCACAGACCCTCACACATATATAAT 59.270 37.037 0.00 0.00 0.00 1.28
1641 1837 7.014326 GTCTCACAGACCCTCACACATATATAA 59.986 40.741 0.00 0.00 39.28 0.98
1642 1838 6.490381 GTCTCACAGACCCTCACACATATATA 59.510 42.308 0.00 0.00 39.28 0.86
1643 1839 5.303078 GTCTCACAGACCCTCACACATATAT 59.697 44.000 0.00 0.00 39.28 0.86
1668 1874 3.823873 CCTATCCAGCACTACTACTCAGG 59.176 52.174 0.00 0.00 0.00 3.86
1677 1883 8.901472 ATATATCAAACTCCTATCCAGCACTA 57.099 34.615 0.00 0.00 0.00 2.74
1693 1907 9.853555 CGCTTTGGCCATATAAAATATATCAAA 57.146 29.630 6.09 0.00 34.44 2.69
1700 1914 7.569639 TTACACGCTTTGGCCATATAAAATA 57.430 32.000 6.09 0.00 34.44 1.40
1706 1920 2.548057 CGATTACACGCTTTGGCCATAT 59.452 45.455 6.09 0.00 34.44 1.78
1707 1921 1.937223 CGATTACACGCTTTGGCCATA 59.063 47.619 6.09 0.00 34.44 2.74
1727 1978 5.627499 TCTTTGCAGAATTATGTGACCAC 57.373 39.130 1.46 0.00 0.00 4.16
1746 2029 5.163754 GGACGTGCAAGTAAATAAGCATCTT 60.164 40.000 4.92 0.00 39.43 2.40
1752 2035 4.688879 TGACAGGACGTGCAAGTAAATAAG 59.311 41.667 10.52 0.00 0.00 1.73
1765 2048 5.815740 GGTCACAATAATAATGACAGGACGT 59.184 40.000 6.00 0.00 43.73 4.34
1770 2053 9.477484 GTAGTAGGGTCACAATAATAATGACAG 57.523 37.037 6.00 0.00 43.73 3.51
1782 2065 2.964464 TGAAACGGTAGTAGGGTCACAA 59.036 45.455 0.00 0.00 0.00 3.33
1811 2094 7.572523 TGAAGCAATTTCTTCTCTTTGAGAA 57.427 32.000 17.01 9.30 44.68 2.87
1812 2095 7.756395 ATGAAGCAATTTCTTCTCTTTGAGA 57.244 32.000 17.01 0.00 42.15 3.27
1836 2119 8.472007 AAAATGACTTACTGTACCAATTCCAA 57.528 30.769 0.00 0.00 0.00 3.53
1837 2120 9.226606 CTAAAATGACTTACTGTACCAATTCCA 57.773 33.333 0.00 0.00 0.00 3.53
1916 2200 2.375014 TTGGAGGGGTTTGTCTTTCC 57.625 50.000 0.00 0.00 0.00 3.13
1917 2201 3.641436 ACATTTGGAGGGGTTTGTCTTTC 59.359 43.478 0.00 0.00 0.00 2.62
1918 2202 3.653164 ACATTTGGAGGGGTTTGTCTTT 58.347 40.909 0.00 0.00 0.00 2.52
1922 2206 7.013834 TCTAAATAACATTTGGAGGGGTTTGT 58.986 34.615 0.00 0.00 0.00 2.83
1932 2216 9.573133 CCTTGTAGCTTTCTAAATAACATTTGG 57.427 33.333 0.00 0.00 0.00 3.28
1942 2226 9.436957 CAGACTAATTCCTTGTAGCTTTCTAAA 57.563 33.333 0.00 0.00 0.00 1.85
1943 2227 8.594550 ACAGACTAATTCCTTGTAGCTTTCTAA 58.405 33.333 0.00 0.00 0.00 2.10
1944 2228 8.135382 ACAGACTAATTCCTTGTAGCTTTCTA 57.865 34.615 0.00 0.00 0.00 2.10
1949 2233 7.707035 CGAATAACAGACTAATTCCTTGTAGCT 59.293 37.037 0.00 0.00 0.00 3.32
1950 2234 7.516943 GCGAATAACAGACTAATTCCTTGTAGC 60.517 40.741 0.00 0.00 0.00 3.58
1951 2235 7.491372 TGCGAATAACAGACTAATTCCTTGTAG 59.509 37.037 0.00 0.00 0.00 2.74
1952 2236 7.324935 TGCGAATAACAGACTAATTCCTTGTA 58.675 34.615 0.00 0.00 0.00 2.41
1953 2237 6.170506 TGCGAATAACAGACTAATTCCTTGT 58.829 36.000 0.00 0.00 0.00 3.16
1954 2238 6.662414 TGCGAATAACAGACTAATTCCTTG 57.338 37.500 0.00 0.00 0.00 3.61
1955 2239 7.681939 TTTGCGAATAACAGACTAATTCCTT 57.318 32.000 0.00 0.00 0.00 3.36
1956 2240 7.681939 TTTTGCGAATAACAGACTAATTCCT 57.318 32.000 0.00 0.00 0.00 3.36
1985 2269 9.408648 TCTTCTTTGACAGACTAAATTCCTTTT 57.591 29.630 0.00 0.00 0.00 2.27
1986 2270 8.980481 TCTTCTTTGACAGACTAAATTCCTTT 57.020 30.769 0.00 0.00 0.00 3.11
1987 2271 7.663493 CCTCTTCTTTGACAGACTAAATTCCTT 59.337 37.037 0.00 0.00 0.00 3.36
1988 2272 7.164803 CCTCTTCTTTGACAGACTAAATTCCT 58.835 38.462 0.00 0.00 0.00 3.36
1989 2273 6.937465 ACCTCTTCTTTGACAGACTAAATTCC 59.063 38.462 0.00 0.00 0.00 3.01
1990 2274 7.657761 TGACCTCTTCTTTGACAGACTAAATTC 59.342 37.037 0.00 0.00 0.00 2.17
1991 2275 7.509546 TGACCTCTTCTTTGACAGACTAAATT 58.490 34.615 0.00 0.00 0.00 1.82
1992 2276 7.067496 TGACCTCTTCTTTGACAGACTAAAT 57.933 36.000 0.00 0.00 0.00 1.40
1993 2277 6.479972 TGACCTCTTCTTTGACAGACTAAA 57.520 37.500 0.00 0.00 0.00 1.85
2034 2318 7.068103 ACCACATCTATGACAAACAAAACTGAA 59.932 33.333 0.00 0.00 0.00 3.02
2046 2330 8.178313 ACGATCTAATAACCACATCTATGACA 57.822 34.615 0.00 0.00 0.00 3.58
2090 2375 2.347150 CGCGCACACACACTAATAATCA 59.653 45.455 8.75 0.00 0.00 2.57
2109 2394 3.085010 CAAGACAAACACGCGCGC 61.085 61.111 32.58 23.91 0.00 6.86
2110 2395 1.717728 GACAAGACAAACACGCGCG 60.718 57.895 30.96 30.96 0.00 6.86
2111 2396 0.041312 ATGACAAGACAAACACGCGC 60.041 50.000 5.73 0.00 0.00 6.86
2112 2397 2.475111 AGTATGACAAGACAAACACGCG 59.525 45.455 3.53 3.53 0.00 6.01
2113 2398 4.468095 AAGTATGACAAGACAAACACGC 57.532 40.909 0.00 0.00 0.00 5.34
2114 2399 9.103048 GATTTTAAGTATGACAAGACAAACACG 57.897 33.333 0.00 0.00 0.00 4.49
2122 2407 9.739276 ATGGTTGAGATTTTAAGTATGACAAGA 57.261 29.630 0.00 0.00 0.00 3.02
2131 2416 9.566432 GGATCATAGATGGTTGAGATTTTAAGT 57.434 33.333 0.00 0.00 0.00 2.24
2132 2417 8.715998 CGGATCATAGATGGTTGAGATTTTAAG 58.284 37.037 0.00 0.00 0.00 1.85
2157 2442 5.124617 TGCTGCTAGATGGAATATCTAGACG 59.875 44.000 21.84 14.22 46.47 4.18
2161 2446 6.924913 ACTTGCTGCTAGATGGAATATCTA 57.075 37.500 17.66 0.00 0.00 1.98
2179 2464 7.148120 CCCATATTCATTGGAGATCATACTTGC 60.148 40.741 0.00 0.00 36.26 4.01
2212 2497 7.292120 AGGCTCTCTTATTGTCAATTCTAGGAT 59.708 37.037 2.79 0.00 0.00 3.24
2213 2498 6.613271 AGGCTCTCTTATTGTCAATTCTAGGA 59.387 38.462 2.79 0.00 0.00 2.94
2214 2499 6.825610 AGGCTCTCTTATTGTCAATTCTAGG 58.174 40.000 2.79 0.00 0.00 3.02
2215 2500 6.640499 CGAGGCTCTCTTATTGTCAATTCTAG 59.360 42.308 13.50 0.22 0.00 2.43
2216 2501 6.461648 CCGAGGCTCTCTTATTGTCAATTCTA 60.462 42.308 13.50 0.00 0.00 2.10
2217 2502 5.355596 CGAGGCTCTCTTATTGTCAATTCT 58.644 41.667 13.50 0.00 0.00 2.40
2218 2503 4.509600 CCGAGGCTCTCTTATTGTCAATTC 59.490 45.833 13.50 0.00 0.00 2.17
2219 2504 4.162320 TCCGAGGCTCTCTTATTGTCAATT 59.838 41.667 13.50 0.00 0.00 2.32
2220 2505 3.706594 TCCGAGGCTCTCTTATTGTCAAT 59.293 43.478 13.50 3.06 0.00 2.57
2221 2506 3.096852 TCCGAGGCTCTCTTATTGTCAA 58.903 45.455 13.50 0.00 0.00 3.18
2222 2507 2.690497 CTCCGAGGCTCTCTTATTGTCA 59.310 50.000 13.50 0.00 0.00 3.58
2223 2508 2.035321 CCTCCGAGGCTCTCTTATTGTC 59.965 54.545 13.50 0.00 0.00 3.18
2224 2509 2.035632 CCTCCGAGGCTCTCTTATTGT 58.964 52.381 13.50 0.00 0.00 2.71
2225 2510 2.035632 ACCTCCGAGGCTCTCTTATTG 58.964 52.381 14.86 0.00 39.63 1.90
2226 2511 2.035632 CACCTCCGAGGCTCTCTTATT 58.964 52.381 14.86 0.00 39.63 1.40
2227 2512 1.698506 CACCTCCGAGGCTCTCTTAT 58.301 55.000 14.86 0.00 39.63 1.73
2228 2513 1.038130 GCACCTCCGAGGCTCTCTTA 61.038 60.000 14.86 0.00 39.63 2.10
2229 2514 2.355193 GCACCTCCGAGGCTCTCTT 61.355 63.158 14.86 0.00 39.63 2.85
2230 2515 2.757917 GCACCTCCGAGGCTCTCT 60.758 66.667 14.86 0.00 39.63 3.10
2231 2516 1.038130 TAAGCACCTCCGAGGCTCTC 61.038 60.000 14.86 1.38 39.63 3.20
2232 2517 0.614979 TTAAGCACCTCCGAGGCTCT 60.615 55.000 14.86 8.65 39.63 4.09
2233 2518 0.179097 CTTAAGCACCTCCGAGGCTC 60.179 60.000 14.86 3.87 39.63 4.70
2234 2519 0.905337 ACTTAAGCACCTCCGAGGCT 60.905 55.000 14.86 3.82 39.63 4.58
2235 2520 0.741221 CACTTAAGCACCTCCGAGGC 60.741 60.000 14.86 1.28 39.63 4.70
2236 2521 0.895530 TCACTTAAGCACCTCCGAGG 59.104 55.000 13.31 13.31 42.49 4.63
2237 2522 1.819288 TCTCACTTAAGCACCTCCGAG 59.181 52.381 1.29 0.00 0.00 4.63
2238 2523 1.544691 GTCTCACTTAAGCACCTCCGA 59.455 52.381 1.29 0.00 0.00 4.55
2239 2524 1.546476 AGTCTCACTTAAGCACCTCCG 59.454 52.381 1.29 0.00 0.00 4.63
2240 2525 2.933056 GCAGTCTCACTTAAGCACCTCC 60.933 54.545 1.29 0.00 0.00 4.30
2241 2526 2.342179 GCAGTCTCACTTAAGCACCTC 58.658 52.381 1.29 0.00 0.00 3.85
2242 2527 1.002544 GGCAGTCTCACTTAAGCACCT 59.997 52.381 1.29 0.00 0.00 4.00
2243 2528 1.270839 TGGCAGTCTCACTTAAGCACC 60.271 52.381 1.29 0.00 0.00 5.01
2244 2529 2.169832 TGGCAGTCTCACTTAAGCAC 57.830 50.000 1.29 0.00 0.00 4.40
2245 2530 2.494059 GTTGGCAGTCTCACTTAAGCA 58.506 47.619 1.29 0.00 0.00 3.91
2246 2531 1.461127 CGTTGGCAGTCTCACTTAAGC 59.539 52.381 1.29 0.00 0.00 3.09
2247 2532 3.026630 TCGTTGGCAGTCTCACTTAAG 57.973 47.619 0.00 0.00 0.00 1.85
2248 2533 3.678056 ATCGTTGGCAGTCTCACTTAA 57.322 42.857 0.00 0.00 0.00 1.85
2249 2534 4.794278 TTATCGTTGGCAGTCTCACTTA 57.206 40.909 0.00 0.00 0.00 2.24
2250 2535 3.678056 TTATCGTTGGCAGTCTCACTT 57.322 42.857 0.00 0.00 0.00 3.16
2251 2536 3.895232 ATTATCGTTGGCAGTCTCACT 57.105 42.857 0.00 0.00 0.00 3.41
2252 2537 3.309954 GGAATTATCGTTGGCAGTCTCAC 59.690 47.826 0.00 0.00 0.00 3.51
2253 2538 3.055458 TGGAATTATCGTTGGCAGTCTCA 60.055 43.478 0.00 0.00 0.00 3.27
2254 2539 3.531538 TGGAATTATCGTTGGCAGTCTC 58.468 45.455 0.00 0.00 0.00 3.36
2255 2540 3.627395 TGGAATTATCGTTGGCAGTCT 57.373 42.857 0.00 0.00 0.00 3.24
2256 2541 3.485216 CGTTGGAATTATCGTTGGCAGTC 60.485 47.826 0.00 0.00 0.00 3.51
2257 2542 2.418628 CGTTGGAATTATCGTTGGCAGT 59.581 45.455 0.00 0.00 0.00 4.40
2258 2543 2.791158 GCGTTGGAATTATCGTTGGCAG 60.791 50.000 0.00 0.00 0.00 4.85
2259 2544 1.131504 GCGTTGGAATTATCGTTGGCA 59.868 47.619 0.00 0.00 0.00 4.92
2260 2545 1.533129 GGCGTTGGAATTATCGTTGGC 60.533 52.381 0.00 0.00 0.00 4.52
2261 2546 1.267832 CGGCGTTGGAATTATCGTTGG 60.268 52.381 0.00 0.00 0.00 3.77
2262 2547 1.267832 CCGGCGTTGGAATTATCGTTG 60.268 52.381 6.01 0.00 0.00 4.10
2263 2548 1.011333 CCGGCGTTGGAATTATCGTT 58.989 50.000 6.01 0.00 0.00 3.85
2264 2549 1.433837 GCCGGCGTTGGAATTATCGT 61.434 55.000 12.58 0.00 0.00 3.73
2265 2550 1.157870 AGCCGGCGTTGGAATTATCG 61.158 55.000 23.20 0.00 0.00 2.92
2266 2551 1.798813 CTAGCCGGCGTTGGAATTATC 59.201 52.381 23.20 0.00 0.00 1.75
2267 2552 1.140252 ACTAGCCGGCGTTGGAATTAT 59.860 47.619 23.20 0.95 0.00 1.28
2268 2553 0.538118 ACTAGCCGGCGTTGGAATTA 59.462 50.000 23.20 3.97 0.00 1.40
2269 2554 0.538118 TACTAGCCGGCGTTGGAATT 59.462 50.000 23.20 2.71 0.00 2.17
2270 2555 0.538118 TTACTAGCCGGCGTTGGAAT 59.462 50.000 23.20 3.61 0.00 3.01
2271 2556 0.321021 TTTACTAGCCGGCGTTGGAA 59.679 50.000 23.20 15.18 0.00 3.53
2272 2557 0.321021 TTTTACTAGCCGGCGTTGGA 59.679 50.000 23.20 9.19 0.00 3.53
2273 2558 0.445043 GTTTTACTAGCCGGCGTTGG 59.555 55.000 23.20 14.66 0.00 3.77
2274 2559 1.127951 CAGTTTTACTAGCCGGCGTTG 59.872 52.381 23.20 17.38 0.00 4.10
2275 2560 1.001181 TCAGTTTTACTAGCCGGCGTT 59.999 47.619 23.20 11.98 0.00 4.84
2276 2561 0.604578 TCAGTTTTACTAGCCGGCGT 59.395 50.000 23.20 16.87 0.00 5.68
2277 2562 0.997196 GTCAGTTTTACTAGCCGGCG 59.003 55.000 23.20 10.77 0.00 6.46
2278 2563 2.000447 CTGTCAGTTTTACTAGCCGGC 59.000 52.381 21.89 21.89 0.00 6.13
2279 2564 2.232941 TCCTGTCAGTTTTACTAGCCGG 59.767 50.000 0.00 0.00 0.00 6.13
2280 2565 3.192844 TCTCCTGTCAGTTTTACTAGCCG 59.807 47.826 0.00 0.00 0.00 5.52
2281 2566 4.803098 TCTCCTGTCAGTTTTACTAGCC 57.197 45.455 0.00 0.00 0.00 3.93
2282 2567 7.436673 CACATATCTCCTGTCAGTTTTACTAGC 59.563 40.741 0.00 0.00 0.00 3.42
2283 2568 7.436673 GCACATATCTCCTGTCAGTTTTACTAG 59.563 40.741 0.00 0.00 0.00 2.57
2284 2569 7.093509 TGCACATATCTCCTGTCAGTTTTACTA 60.094 37.037 0.00 0.00 0.00 1.82
2285 2570 6.109359 GCACATATCTCCTGTCAGTTTTACT 58.891 40.000 0.00 0.00 0.00 2.24
2286 2571 5.874810 TGCACATATCTCCTGTCAGTTTTAC 59.125 40.000 0.00 0.00 0.00 2.01
2287 2572 6.048732 TGCACATATCTCCTGTCAGTTTTA 57.951 37.500 0.00 0.00 0.00 1.52
2288 2573 4.910195 TGCACATATCTCCTGTCAGTTTT 58.090 39.130 0.00 0.00 0.00 2.43
2289 2574 4.558226 TGCACATATCTCCTGTCAGTTT 57.442 40.909 0.00 0.00 0.00 2.66
2290 2575 4.558226 TTGCACATATCTCCTGTCAGTT 57.442 40.909 0.00 0.00 0.00 3.16
2291 2576 4.767578 ATTGCACATATCTCCTGTCAGT 57.232 40.909 0.00 0.00 0.00 3.41
2292 2577 6.094193 TCTATTGCACATATCTCCTGTCAG 57.906 41.667 0.00 0.00 0.00 3.51
2293 2578 6.295518 GGATCTATTGCACATATCTCCTGTCA 60.296 42.308 0.00 0.00 0.00 3.58
2294 2579 6.070881 AGGATCTATTGCACATATCTCCTGTC 60.071 42.308 12.98 0.00 0.00 3.51
2295 2580 5.784390 AGGATCTATTGCACATATCTCCTGT 59.216 40.000 12.98 0.00 0.00 4.00
2296 2581 6.297080 AGGATCTATTGCACATATCTCCTG 57.703 41.667 12.98 0.00 0.00 3.86
2297 2582 7.188381 ACTAGGATCTATTGCACATATCTCCT 58.812 38.462 15.52 15.52 35.00 3.69
2298 2583 7.416964 ACTAGGATCTATTGCACATATCTCC 57.583 40.000 0.00 0.00 0.00 3.71
2299 2584 7.277539 GCAACTAGGATCTATTGCACATATCTC 59.722 40.741 14.60 0.00 45.38 2.75
2300 2585 7.102346 GCAACTAGGATCTATTGCACATATCT 58.898 38.462 14.60 0.00 45.38 1.98
2301 2586 7.301068 GCAACTAGGATCTATTGCACATATC 57.699 40.000 14.60 0.00 45.38 1.63
2321 2606 2.755103 CCCTATGTTTTGAGGAGGCAAC 59.245 50.000 0.00 0.00 34.46 4.17
2322 2607 2.647299 TCCCTATGTTTTGAGGAGGCAA 59.353 45.455 0.00 0.00 34.46 4.52
2323 2608 2.026262 GTCCCTATGTTTTGAGGAGGCA 60.026 50.000 0.00 0.00 34.46 4.75
2324 2609 2.239907 AGTCCCTATGTTTTGAGGAGGC 59.760 50.000 0.00 0.00 34.46 4.70
2325 2610 4.263506 ACAAGTCCCTATGTTTTGAGGAGG 60.264 45.833 0.00 0.00 34.46 4.30
2326 2611 4.911390 ACAAGTCCCTATGTTTTGAGGAG 58.089 43.478 0.00 0.00 34.46 3.69
2327 2612 4.993705 ACAAGTCCCTATGTTTTGAGGA 57.006 40.909 0.00 0.00 34.46 3.71
2328 2613 6.049955 TCTACAAGTCCCTATGTTTTGAGG 57.950 41.667 0.00 0.00 0.00 3.86
2329 2614 7.824289 TCATTCTACAAGTCCCTATGTTTTGAG 59.176 37.037 0.00 0.00 0.00 3.02
2330 2615 7.685481 TCATTCTACAAGTCCCTATGTTTTGA 58.315 34.615 0.00 0.00 0.00 2.69
2331 2616 7.921786 TCATTCTACAAGTCCCTATGTTTTG 57.078 36.000 0.00 0.00 0.00 2.44
2332 2617 7.557719 CCATCATTCTACAAGTCCCTATGTTTT 59.442 37.037 0.00 0.00 0.00 2.43
2333 2618 7.056635 CCATCATTCTACAAGTCCCTATGTTT 58.943 38.462 0.00 0.00 0.00 2.83
2334 2619 6.386927 TCCATCATTCTACAAGTCCCTATGTT 59.613 38.462 0.00 0.00 0.00 2.71
2335 2620 5.905331 TCCATCATTCTACAAGTCCCTATGT 59.095 40.000 0.00 0.00 0.00 2.29
2336 2621 6.425210 TCCATCATTCTACAAGTCCCTATG 57.575 41.667 0.00 0.00 0.00 2.23
2337 2622 8.742125 TTATCCATCATTCTACAAGTCCCTAT 57.258 34.615 0.00 0.00 0.00 2.57
2338 2623 8.561536 TTTATCCATCATTCTACAAGTCCCTA 57.438 34.615 0.00 0.00 0.00 3.53
2339 2624 7.451731 TTTATCCATCATTCTACAAGTCCCT 57.548 36.000 0.00 0.00 0.00 4.20
2340 2625 7.556275 TGTTTTATCCATCATTCTACAAGTCCC 59.444 37.037 0.00 0.00 0.00 4.46
2341 2626 8.506168 TGTTTTATCCATCATTCTACAAGTCC 57.494 34.615 0.00 0.00 0.00 3.85
2342 2627 9.167311 ACTGTTTTATCCATCATTCTACAAGTC 57.833 33.333 0.00 0.00 0.00 3.01
2343 2628 9.520515 AACTGTTTTATCCATCATTCTACAAGT 57.479 29.630 0.00 0.00 0.00 3.16
2361 2646 9.423061 GTGGCATGATTAAGATAAAACTGTTTT 57.577 29.630 20.87 20.87 36.67 2.43
2362 2647 8.584157 TGTGGCATGATTAAGATAAAACTGTTT 58.416 29.630 0.00 0.00 0.00 2.83
2363 2648 8.121305 TGTGGCATGATTAAGATAAAACTGTT 57.879 30.769 0.00 0.00 0.00 3.16
2364 2649 7.701539 TGTGGCATGATTAAGATAAAACTGT 57.298 32.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.