Multiple sequence alignment - TraesCS1D01G082300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G082300 chr1D 100.000 4558 0 0 1 4558 64322696 64327253 0.000000e+00 8418.0
1 TraesCS1D01G082300 chr1D 100.000 3869 0 0 4846 8714 64327541 64331409 0.000000e+00 7145.0
2 TraesCS1D01G082300 chr1D 96.487 3701 100 22 866 4558 96072015 96068337 0.000000e+00 6087.0
3 TraesCS1D01G082300 chr1D 95.795 1831 37 10 6263 8087 96042909 96041113 0.000000e+00 2918.0
4 TraesCS1D01G082300 chr1D 96.067 1424 40 7 4846 6267 96068248 96066839 0.000000e+00 2305.0
5 TraesCS1D01G082300 chr1D 91.472 1372 44 15 5376 6741 439346313 439347617 0.000000e+00 1818.0
6 TraesCS1D01G082300 chr1D 91.007 556 44 5 7439 7993 439354008 439354558 0.000000e+00 745.0
7 TraesCS1D01G082300 chr1D 97.015 335 10 0 8380 8714 96040774 96040440 1.640000e-156 564.0
8 TraesCS1D01G082300 chr1D 89.151 424 22 4 8042 8465 439355423 439355822 2.810000e-139 507.0
9 TraesCS1D01G082300 chr1D 97.276 257 7 0 8086 8342 96041031 96040775 3.740000e-118 436.0
10 TraesCS1D01G082300 chr1D 95.699 93 3 1 3216 3307 10263602 10263510 1.960000e-31 148.0
11 TraesCS1D01G082300 chr3D 92.735 3799 163 42 4846 8630 579679563 579683262 0.000000e+00 5382.0
12 TraesCS1D01G082300 chr3D 94.603 1260 59 8 3305 4558 579678207 579679463 0.000000e+00 1941.0
13 TraesCS1D01G082300 chr3D 92.038 1055 49 19 1360 2410 579676046 579677069 0.000000e+00 1450.0
14 TraesCS1D01G082300 chr3D 83.799 537 48 14 109 631 9758168 9757657 2.850000e-129 473.0
15 TraesCS1D01G082300 chr3D 90.955 199 8 3 5922 6118 422517793 422517603 8.680000e-65 259.0
16 TraesCS1D01G082300 chr3D 94.505 91 5 0 4 94 9758311 9758221 3.280000e-29 141.0
17 TraesCS1D01G082300 chr7D 95.684 2572 86 14 4846 7404 600054467 600057026 0.000000e+00 4111.0
18 TraesCS1D01G082300 chr7D 95.172 1512 59 8 1719 3224 600051615 600053118 0.000000e+00 2375.0
19 TraesCS1D01G082300 chr7D 95.949 1259 46 2 3305 4558 600053116 600054374 0.000000e+00 2037.0
20 TraesCS1D01G082300 chr7D 85.648 648 60 24 850 1491 600050848 600051468 0.000000e+00 651.0
21 TraesCS1D01G082300 chr7D 82.960 223 29 5 417 631 520847937 520847716 8.930000e-45 193.0
22 TraesCS1D01G082300 chr7D 82.609 184 25 4 452 631 117785208 117785388 1.170000e-33 156.0
23 TraesCS1D01G082300 chr7D 85.938 128 13 4 659 783 134785534 134785659 1.970000e-26 132.0
24 TraesCS1D01G082300 chr7D 89.062 64 4 3 733 794 527302266 527302328 9.380000e-10 76.8
25 TraesCS1D01G082300 chr1B 92.796 2693 126 20 5376 8056 596167577 596170213 0.000000e+00 3836.0
26 TraesCS1D01G082300 chr1B 93.073 1819 100 15 1416 3224 116126647 116128449 0.000000e+00 2638.0
27 TraesCS1D01G082300 chr1B 92.735 1817 91 20 1416 3224 146963279 146961496 0.000000e+00 2586.0
28 TraesCS1D01G082300 chr1B 93.704 1080 60 6 4860 5934 146952637 146951561 0.000000e+00 1611.0
29 TraesCS1D01G082300 chr1B 93.327 1094 65 6 4846 5933 116139330 116140421 0.000000e+00 1609.0
30 TraesCS1D01G082300 chr1B 86.119 1059 86 27 7439 8465 596169598 596170627 0.000000e+00 1085.0
31 TraesCS1D01G082300 chr1B 91.813 684 54 2 7078 7760 144795792 144795110 0.000000e+00 952.0
32 TraesCS1D01G082300 chr1B 89.733 750 63 7 7513 8258 116141471 116142210 0.000000e+00 946.0
33 TraesCS1D01G082300 chr1B 95.032 463 22 1 4096 4558 146953144 146952683 0.000000e+00 726.0
34 TraesCS1D01G082300 chr1B 83.401 741 77 25 7984 8714 146949876 146949172 0.000000e+00 645.0
35 TraesCS1D01G082300 chr1B 89.106 358 32 2 936 1292 116126237 116126588 1.040000e-118 438.0
36 TraesCS1D01G082300 chr1B 88.983 118 7 6 3220 3334 421093270 421093156 3.280000e-29 141.0
37 TraesCS1D01G082300 chr1B 83.721 86 7 4 735 816 309628157 309628075 3.370000e-09 75.0
38 TraesCS1D01G082300 chr3B 91.913 2745 150 26 4938 7665 774393230 774395919 0.000000e+00 3773.0
39 TraesCS1D01G082300 chr3B 91.660 2422 133 28 829 3218 774165012 774167396 0.000000e+00 3290.0
40 TraesCS1D01G082300 chr3B 94.122 1259 67 4 3305 4558 734986950 734985694 0.000000e+00 1908.0
41 TraesCS1D01G082300 chr3B 93.844 1267 63 6 3305 4558 774391743 774393007 0.000000e+00 1893.0
42 TraesCS1D01G082300 chr3B 87.935 1467 125 26 1043 2500 774239011 774240434 0.000000e+00 1681.0
43 TraesCS1D01G082300 chr3B 93.807 1098 52 11 4846 5933 774168832 774169923 0.000000e+00 1637.0
44 TraesCS1D01G082300 chr3B 96.881 962 22 5 6478 7433 774169920 774170879 0.000000e+00 1604.0
45 TraesCS1D01G082300 chr3B 94.415 931 45 5 3305 4233 774167400 774168325 0.000000e+00 1424.0
46 TraesCS1D01G082300 chr3B 85.953 1139 86 29 853 1986 774235662 774236731 0.000000e+00 1149.0
47 TraesCS1D01G082300 chr3B 91.571 700 41 8 4846 5538 734985607 734984919 0.000000e+00 950.0
48 TraesCS1D01G082300 chr3B 85.300 932 99 20 7797 8714 550780493 550781400 0.000000e+00 928.0
49 TraesCS1D01G082300 chr3B 90.144 487 41 7 7551 8032 774170905 774171389 2.070000e-175 627.0
50 TraesCS1D01G082300 chr3B 85.533 553 59 16 850 1398 734993026 734992491 7.640000e-155 558.0
51 TraesCS1D01G082300 chr3B 85.401 411 40 10 8293 8694 734969230 734968831 8.140000e-110 409.0
52 TraesCS1D01G082300 chr3B 85.279 394 33 6 7937 8319 774397966 774398345 4.940000e-102 383.0
53 TraesCS1D01G082300 chr3B 89.950 199 10 3 5922 6118 550641554 550641364 1.880000e-61 248.0
54 TraesCS1D01G082300 chr3B 88.325 197 16 3 5919 6115 809838147 809838336 6.800000e-56 230.0
55 TraesCS1D01G082300 chr7B 91.505 2166 128 24 1085 3224 6952138 6954273 0.000000e+00 2929.0
56 TraesCS1D01G082300 chr7B 91.529 1086 58 16 4868 5938 6975668 6976734 0.000000e+00 1465.0
57 TraesCS1D01G082300 chr7B 89.659 822 65 11 7445 8258 6977671 6978480 0.000000e+00 1029.0
58 TraesCS1D01G082300 chr7B 89.223 399 37 2 8322 8714 6978549 6978947 2.190000e-135 494.0
59 TraesCS1D01G082300 chr3A 90.182 2251 166 31 6478 8711 607838382 607840594 0.000000e+00 2881.0
60 TraesCS1D01G082300 chr3A 89.162 2279 164 33 6479 8714 679846162 679848400 0.000000e+00 2763.0
61 TraesCS1D01G082300 chr3A 94.633 1416 67 9 1814 3224 714777208 714778619 0.000000e+00 2185.0
62 TraesCS1D01G082300 chr3A 93.142 1429 77 11 1814 3224 679842322 679843747 0.000000e+00 2076.0
63 TraesCS1D01G082300 chr3A 94.590 1257 63 5 3305 4558 679843745 679844999 0.000000e+00 1940.0
64 TraesCS1D01G082300 chr3A 94.019 1254 70 5 3305 4555 607835939 607837190 0.000000e+00 1895.0
65 TraesCS1D01G082300 chr3A 93.784 1094 47 8 4846 5933 679845086 679846164 0.000000e+00 1624.0
66 TraesCS1D01G082300 chr3A 93.607 1095 57 8 4846 5933 714780242 714781330 0.000000e+00 1622.0
67 TraesCS1D01G082300 chr3A 90.436 1192 75 7 5333 6521 638895224 638894069 0.000000e+00 1533.0
68 TraesCS1D01G082300 chr3A 94.628 968 44 4 6478 7437 714781327 714782294 0.000000e+00 1493.0
69 TraesCS1D01G082300 chr3A 95.539 919 35 4 3305 4218 714778617 714779534 0.000000e+00 1465.0
70 TraesCS1D01G082300 chr3A 87.811 1206 88 23 7521 8714 714782289 714783447 0.000000e+00 1358.0
71 TraesCS1D01G082300 chr3A 87.590 830 68 13 850 1673 714776336 714777136 0.000000e+00 929.0
72 TraesCS1D01G082300 chr3A 85.663 830 76 26 850 1673 679841458 679842250 0.000000e+00 833.0
73 TraesCS1D01G082300 chr3A 93.452 504 23 7 4846 5346 607837271 607837767 0.000000e+00 739.0
74 TraesCS1D01G082300 chr3A 84.106 453 32 19 849 1296 714944504 714944921 1.360000e-107 401.0
75 TraesCS1D01G082300 chr3A 90.291 309 24 2 8406 8714 638882955 638882653 4.900000e-107 399.0
76 TraesCS1D01G082300 chr3A 87.333 150 14 4 663 809 577560440 577560587 5.410000e-37 167.0
77 TraesCS1D01G082300 chr3A 84.906 159 18 5 659 814 674479626 674479781 1.170000e-33 156.0
78 TraesCS1D01G082300 chr3A 81.013 158 18 4 6108 6256 714949270 714949424 1.990000e-21 115.0
79 TraesCS1D01G082300 chr6A 88.707 2258 176 43 6478 8714 121732386 121730187 0.000000e+00 2684.0
80 TraesCS1D01G082300 chr6A 91.711 1134 62 5 3305 4437 121737861 121736759 0.000000e+00 1544.0
81 TraesCS1D01G082300 chr6A 93.778 884 43 4 2351 3224 121738740 121737859 0.000000e+00 1317.0
82 TraesCS1D01G082300 chr6A 93.565 575 22 5 4871 5443 121733482 121732921 0.000000e+00 843.0
83 TraesCS1D01G082300 chr6A 85.488 820 70 25 961 1770 121745309 121744529 0.000000e+00 809.0
84 TraesCS1D01G082300 chr6A 96.694 121 4 0 4433 4553 121733628 121733508 1.480000e-47 202.0
85 TraesCS1D01G082300 chr6A 88.710 62 7 0 733 794 332878691 332878630 9.380000e-10 76.8
86 TraesCS1D01G082300 chr2D 89.313 655 37 16 1 631 64617397 64616752 0.000000e+00 791.0
87 TraesCS1D01G082300 chr4D 89.335 647 43 18 1 631 373256735 373257371 0.000000e+00 789.0
88 TraesCS1D01G082300 chr4D 89.386 603 33 14 1 576 11121202 11121800 0.000000e+00 730.0
89 TraesCS1D01G082300 chr4D 88.907 604 36 14 1 576 11137752 11138352 0.000000e+00 715.0
90 TraesCS1D01G082300 chr4D 84.516 155 17 6 659 809 37611894 37611743 7.050000e-31 147.0
91 TraesCS1D01G082300 chr4D 84.252 127 15 4 659 782 499689057 499689181 1.540000e-22 119.0
92 TraesCS1D01G082300 chr4D 92.063 63 4 1 569 631 11138634 11138695 4.330000e-13 87.9
93 TraesCS1D01G082300 chr4A 89.375 640 39 14 1 615 667230462 667229827 0.000000e+00 778.0
94 TraesCS1D01G082300 chr4A 84.317 542 46 10 8089 8630 9630419 9630921 2.190000e-135 494.0
95 TraesCS1D01G082300 chr6D 87.244 439 33 12 8289 8706 68914219 68914655 6.120000e-131 479.0
96 TraesCS1D01G082300 chr6D 79.582 622 72 23 1 574 2418023 2418637 2.280000e-105 394.0
97 TraesCS1D01G082300 chr6B 83.409 440 34 19 1 407 249096 249529 1.070000e-98 372.0
98 TraesCS1D01G082300 chr6B 95.876 97 4 0 3211 3307 280098720 280098624 3.260000e-34 158.0
99 TraesCS1D01G082300 chrUn 89.119 193 18 3 5919 6110 117301730 117301540 4.070000e-58 237.0
100 TraesCS1D01G082300 chrUn 80.519 231 31 7 415 631 29806936 29807166 1.950000e-36 165.0
101 TraesCS1D01G082300 chr1A 88.442 199 13 3 5925 6122 582360008 582360197 1.890000e-56 231.0
102 TraesCS1D01G082300 chr1A 86.709 158 17 3 5952 6108 493526270 493526424 1.160000e-38 172.0
103 TraesCS1D01G082300 chr1A 86.139 101 11 3 521 619 455570036 455570135 1.200000e-18 106.0
104 TraesCS1D01G082300 chr5A 98.889 90 1 0 3221 3310 608605222 608605133 2.520000e-35 161.0
105 TraesCS1D01G082300 chr5A 96.809 94 3 0 3216 3309 413843514 413843421 3.260000e-34 158.0
106 TraesCS1D01G082300 chr5A 81.319 91 7 4 18 108 323642774 323642694 2.030000e-06 65.8
107 TraesCS1D01G082300 chr5B 97.826 92 1 1 3220 3311 432174699 432174789 3.260000e-34 158.0
108 TraesCS1D01G082300 chr4B 97.778 90 2 0 3218 3307 552237798 552237887 1.170000e-33 156.0
109 TraesCS1D01G082300 chr4B 94.000 100 6 0 3212 3311 636919078 636918979 1.520000e-32 152.0
110 TraesCS1D01G082300 chr2A 85.542 83 10 2 735 816 207230484 207230403 1.560000e-12 86.1
111 TraesCS1D01G082300 chr5D 83.117 77 6 1 18 94 232284934 232285003 7.300000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G082300 chr1D 64322696 64331409 8713 False 7781.500000 8418 100.000000 1 8714 2 chr1D.!!$F2 8713
1 TraesCS1D01G082300 chr1D 96066839 96072015 5176 True 4196.000000 6087 96.277000 866 6267 2 chr1D.!!$R3 5401
2 TraesCS1D01G082300 chr1D 439346313 439347617 1304 False 1818.000000 1818 91.472000 5376 6741 1 chr1D.!!$F1 1365
3 TraesCS1D01G082300 chr1D 96040440 96042909 2469 True 1306.000000 2918 96.695333 6263 8714 3 chr1D.!!$R2 2451
4 TraesCS1D01G082300 chr1D 439354008 439355822 1814 False 626.000000 745 90.079000 7439 8465 2 chr1D.!!$F3 1026
5 TraesCS1D01G082300 chr3D 579676046 579683262 7216 False 2924.333333 5382 93.125333 1360 8630 3 chr3D.!!$F1 7270
6 TraesCS1D01G082300 chr3D 9757657 9758311 654 True 307.000000 473 89.152000 4 631 2 chr3D.!!$R2 627
7 TraesCS1D01G082300 chr7D 600050848 600057026 6178 False 2293.500000 4111 93.113250 850 7404 4 chr7D.!!$F4 6554
8 TraesCS1D01G082300 chr1B 146961496 146963279 1783 True 2586.000000 2586 92.735000 1416 3224 1 chr1B.!!$R2 1808
9 TraesCS1D01G082300 chr1B 596167577 596170627 3050 False 2460.500000 3836 89.457500 5376 8465 2 chr1B.!!$F3 3089
10 TraesCS1D01G082300 chr1B 116126237 116128449 2212 False 1538.000000 2638 91.089500 936 3224 2 chr1B.!!$F1 2288
11 TraesCS1D01G082300 chr1B 116139330 116142210 2880 False 1277.500000 1609 91.530000 4846 8258 2 chr1B.!!$F2 3412
12 TraesCS1D01G082300 chr1B 146949172 146953144 3972 True 994.000000 1611 90.712333 4096 8714 3 chr1B.!!$R5 4618
13 TraesCS1D01G082300 chr1B 144795110 144795792 682 True 952.000000 952 91.813000 7078 7760 1 chr1B.!!$R1 682
14 TraesCS1D01G082300 chr3B 774391743 774398345 6602 False 2016.333333 3773 90.345333 3305 8319 3 chr3B.!!$F5 5014
15 TraesCS1D01G082300 chr3B 774165012 774171389 6377 False 1716.400000 3290 93.381400 829 8032 5 chr3B.!!$F3 7203
16 TraesCS1D01G082300 chr3B 734984919 734986950 2031 True 1429.000000 1908 92.846500 3305 5538 2 chr3B.!!$R4 2233
17 TraesCS1D01G082300 chr3B 774235662 774240434 4772 False 1415.000000 1681 86.944000 853 2500 2 chr3B.!!$F4 1647
18 TraesCS1D01G082300 chr3B 550780493 550781400 907 False 928.000000 928 85.300000 7797 8714 1 chr3B.!!$F1 917
19 TraesCS1D01G082300 chr3B 734992491 734993026 535 True 558.000000 558 85.533000 850 1398 1 chr3B.!!$R3 548
20 TraesCS1D01G082300 chr7B 6952138 6954273 2135 False 2929.000000 2929 91.505000 1085 3224 1 chr7B.!!$F1 2139
21 TraesCS1D01G082300 chr7B 6975668 6978947 3279 False 996.000000 1465 90.137000 4868 8714 3 chr7B.!!$F2 3846
22 TraesCS1D01G082300 chr3A 679841458 679848400 6942 False 1847.200000 2763 91.268200 850 8714 5 chr3A.!!$F6 7864
23 TraesCS1D01G082300 chr3A 607835939 607840594 4655 False 1838.333333 2881 92.551000 3305 8711 3 chr3A.!!$F5 5406
24 TraesCS1D01G082300 chr3A 638894069 638895224 1155 True 1533.000000 1533 90.436000 5333 6521 1 chr3A.!!$R2 1188
25 TraesCS1D01G082300 chr3A 714776336 714783447 7111 False 1508.666667 2185 92.301333 850 8714 6 chr3A.!!$F7 7864
26 TraesCS1D01G082300 chr6A 121730187 121738740 8553 True 1318.000000 2684 92.891000 2351 8714 5 chr6A.!!$R3 6363
27 TraesCS1D01G082300 chr6A 121744529 121745309 780 True 809.000000 809 85.488000 961 1770 1 chr6A.!!$R1 809
28 TraesCS1D01G082300 chr2D 64616752 64617397 645 True 791.000000 791 89.313000 1 631 1 chr2D.!!$R1 630
29 TraesCS1D01G082300 chr4D 373256735 373257371 636 False 789.000000 789 89.335000 1 631 1 chr4D.!!$F2 630
30 TraesCS1D01G082300 chr4D 11121202 11121800 598 False 730.000000 730 89.386000 1 576 1 chr4D.!!$F1 575
31 TraesCS1D01G082300 chr4D 11137752 11138695 943 False 401.450000 715 90.485000 1 631 2 chr4D.!!$F4 630
32 TraesCS1D01G082300 chr4A 667229827 667230462 635 True 778.000000 778 89.375000 1 615 1 chr4A.!!$R1 614
33 TraesCS1D01G082300 chr4A 9630419 9630921 502 False 494.000000 494 84.317000 8089 8630 1 chr4A.!!$F1 541
34 TraesCS1D01G082300 chr6D 2418023 2418637 614 False 394.000000 394 79.582000 1 574 1 chr6D.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 1028 0.103026 TGCACTACTGATGCCTAGCG 59.897 55.000 0.00 0.00 42.69 4.26 F
1244 1666 0.245539 CGCCCCTCTCGAACTGTTTA 59.754 55.000 0.00 0.00 0.00 2.01 F
1291 1713 0.317799 TTTCGGTCGATTTCGGGTCA 59.682 50.000 0.00 0.00 40.29 4.02 F
2893 6792 0.181350 ATTGTGGCCCTGCTAGCTAC 59.819 55.000 17.23 6.14 41.64 3.58 F
2894 6793 0.909610 TTGTGGCCCTGCTAGCTACT 60.910 55.000 17.23 0.00 41.80 2.57 F
3950 7989 3.493440 GGACCTTTAACGGCGGCG 61.493 66.667 31.06 31.06 0.00 6.46 F
4508 12052 3.667360 CGGTGCTGATATTGGATGATCA 58.333 45.455 0.00 0.00 0.00 2.92 F
6014 13702 0.109723 TACGCAGCCTTTCCCAGTTT 59.890 50.000 0.00 0.00 0.00 2.66 F
6454 14148 0.607217 CCCTGCAACATGCTGAGTGA 60.607 55.000 10.31 0.00 45.31 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 5668 3.970610 CACGTGAGCAATCAAGAAAACTG 59.029 43.478 10.90 0.00 0.00 3.16 R
2894 6793 4.382147 GGCCAAGTAAAAAGTTCACAACCA 60.382 41.667 0.00 0.00 0.00 3.67 R
3037 6937 7.906160 ACACAATCATACTTAAATACGTGAGC 58.094 34.615 0.00 0.00 0.00 4.26 R
3950 7989 1.589716 GCACAACTGCAGGATGACCC 61.590 60.000 23.60 10.45 43.62 4.46 R
4487 12031 3.667360 TGATCATCCAATATCAGCACCG 58.333 45.455 0.00 0.00 0.00 4.94 R
5211 12800 2.199652 CGGGGCCTGCACAAAAAGA 61.200 57.895 0.84 0.00 0.00 2.52 R
6261 13950 0.327480 ATCCCTCCATACCTGTGCCA 60.327 55.000 0.00 0.00 0.00 4.92 R
7642 15448 1.728971 GACCATGTCGCTCTTGTTCTG 59.271 52.381 0.00 0.00 0.00 3.02 R
8095 18779 0.105964 TACGTCACTTTGCCAGCAGT 59.894 50.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 9.076596 GTAATTTCTATTGTTGGAAGCATCAAC 57.923 33.333 9.06 9.06 43.29 3.18
320 378 5.088739 CACTGGAAGCAAATTTTAGTAGCG 58.911 41.667 0.00 0.00 37.60 4.26
322 380 3.756434 TGGAAGCAAATTTTAGTAGCGCT 59.244 39.130 17.26 17.26 0.00 5.92
472 565 5.646215 AGATACTAGAGGGACCTATGTTGG 58.354 45.833 0.00 0.00 0.00 3.77
481 574 3.974642 GGGACCTATGTTGGAAGGACTAT 59.025 47.826 0.00 0.00 36.66 2.12
486 579 8.218488 GGACCTATGTTGGAAGGACTATTAATT 58.782 37.037 0.00 0.00 36.66 1.40
513 606 2.427095 GCTAAAATCCAGTGGCGGAATT 59.573 45.455 3.51 0.00 38.95 2.17
516 609 1.663695 AATCCAGTGGCGGAATTACG 58.336 50.000 5.46 5.46 38.95 3.18
552 646 9.927668 CATTATTAGTTTCAGTTTTGGGAACAT 57.072 29.630 0.00 0.00 42.32 2.71
558 652 6.593770 AGTTTCAGTTTTGGGAACATTCAAAC 59.406 34.615 0.00 0.00 42.32 2.93
631 1012 3.562182 TCTACTGGTCCGATAGAATGCA 58.438 45.455 0.00 0.00 39.76 3.96
632 1013 2.604046 ACTGGTCCGATAGAATGCAC 57.396 50.000 0.00 0.00 39.76 4.57
633 1014 2.111384 ACTGGTCCGATAGAATGCACT 58.889 47.619 0.00 0.00 39.76 4.40
634 1015 3.296854 ACTGGTCCGATAGAATGCACTA 58.703 45.455 0.00 0.00 39.76 2.74
635 1016 3.068307 ACTGGTCCGATAGAATGCACTAC 59.932 47.826 0.00 0.00 39.76 2.73
636 1017 3.296854 TGGTCCGATAGAATGCACTACT 58.703 45.455 0.00 0.00 39.76 2.57
637 1018 3.068165 TGGTCCGATAGAATGCACTACTG 59.932 47.826 0.00 0.00 39.76 2.74
638 1019 3.318275 GGTCCGATAGAATGCACTACTGA 59.682 47.826 0.00 0.00 39.76 3.41
639 1020 4.021894 GGTCCGATAGAATGCACTACTGAT 60.022 45.833 0.00 0.00 39.76 2.90
640 1021 4.920340 GTCCGATAGAATGCACTACTGATG 59.080 45.833 0.00 0.00 39.76 3.07
641 1022 3.677121 CCGATAGAATGCACTACTGATGC 59.323 47.826 0.00 0.00 40.68 3.91
642 1023 3.677121 CGATAGAATGCACTACTGATGCC 59.323 47.826 0.00 0.00 39.83 4.40
643 1024 4.560311 CGATAGAATGCACTACTGATGCCT 60.560 45.833 0.00 0.00 39.83 4.75
644 1025 5.335976 CGATAGAATGCACTACTGATGCCTA 60.336 44.000 0.00 0.00 39.83 3.93
645 1026 4.333913 AGAATGCACTACTGATGCCTAG 57.666 45.455 0.00 0.00 42.69 3.02
646 1027 2.540265 ATGCACTACTGATGCCTAGC 57.460 50.000 0.00 0.00 42.69 3.42
647 1028 0.103026 TGCACTACTGATGCCTAGCG 59.897 55.000 0.00 0.00 42.69 4.26
648 1029 0.598680 GCACTACTGATGCCTAGCGG 60.599 60.000 0.00 0.00 37.08 5.52
649 1030 0.747255 CACTACTGATGCCTAGCGGT 59.253 55.000 0.00 0.00 35.63 5.68
650 1031 1.137086 CACTACTGATGCCTAGCGGTT 59.863 52.381 0.00 0.00 33.13 4.44
651 1032 1.409427 ACTACTGATGCCTAGCGGTTC 59.591 52.381 0.00 0.00 33.13 3.62
652 1033 0.750850 TACTGATGCCTAGCGGTTCC 59.249 55.000 0.00 0.00 33.13 3.62
653 1034 1.227674 CTGATGCCTAGCGGTTCCC 60.228 63.158 0.00 0.00 0.00 3.97
654 1035 1.689233 TGATGCCTAGCGGTTCCCT 60.689 57.895 0.00 0.00 0.00 4.20
655 1036 1.227674 GATGCCTAGCGGTTCCCTG 60.228 63.158 0.00 0.00 0.00 4.45
656 1037 1.972660 GATGCCTAGCGGTTCCCTGT 61.973 60.000 0.00 0.00 0.00 4.00
657 1038 0.689745 ATGCCTAGCGGTTCCCTGTA 60.690 55.000 0.00 0.00 0.00 2.74
658 1039 0.905809 TGCCTAGCGGTTCCCTGTAA 60.906 55.000 0.00 0.00 0.00 2.41
659 1040 0.468648 GCCTAGCGGTTCCCTGTAAT 59.531 55.000 0.00 0.00 0.00 1.89
660 1041 1.810412 GCCTAGCGGTTCCCTGTAATG 60.810 57.143 0.00 0.00 0.00 1.90
661 1042 1.485066 CCTAGCGGTTCCCTGTAATGT 59.515 52.381 0.00 0.00 0.00 2.71
662 1043 2.696707 CCTAGCGGTTCCCTGTAATGTA 59.303 50.000 0.00 0.00 0.00 2.29
663 1044 3.323979 CCTAGCGGTTCCCTGTAATGTAT 59.676 47.826 0.00 0.00 0.00 2.29
664 1045 3.926058 AGCGGTTCCCTGTAATGTATT 57.074 42.857 0.00 0.00 0.00 1.89
665 1046 3.541632 AGCGGTTCCCTGTAATGTATTG 58.458 45.455 0.00 0.00 0.00 1.90
666 1047 2.616842 GCGGTTCCCTGTAATGTATTGG 59.383 50.000 0.00 0.00 0.00 3.16
667 1048 3.881220 CGGTTCCCTGTAATGTATTGGT 58.119 45.455 0.00 0.00 0.00 3.67
668 1049 4.266714 CGGTTCCCTGTAATGTATTGGTT 58.733 43.478 0.00 0.00 0.00 3.67
669 1050 4.095782 CGGTTCCCTGTAATGTATTGGTTG 59.904 45.833 0.00 0.00 0.00 3.77
670 1051 5.014202 GGTTCCCTGTAATGTATTGGTTGT 58.986 41.667 0.00 0.00 0.00 3.32
671 1052 5.479027 GGTTCCCTGTAATGTATTGGTTGTT 59.521 40.000 0.00 0.00 0.00 2.83
672 1053 6.014925 GGTTCCCTGTAATGTATTGGTTGTTT 60.015 38.462 0.00 0.00 0.00 2.83
673 1054 7.438564 GTTCCCTGTAATGTATTGGTTGTTTT 58.561 34.615 0.00 0.00 0.00 2.43
674 1055 6.987386 TCCCTGTAATGTATTGGTTGTTTTG 58.013 36.000 0.00 0.00 0.00 2.44
675 1056 6.551601 TCCCTGTAATGTATTGGTTGTTTTGT 59.448 34.615 0.00 0.00 0.00 2.83
676 1057 6.866248 CCCTGTAATGTATTGGTTGTTTTGTC 59.134 38.462 0.00 0.00 0.00 3.18
677 1058 7.429633 CCTGTAATGTATTGGTTGTTTTGTCA 58.570 34.615 0.00 0.00 0.00 3.58
678 1059 8.087750 CCTGTAATGTATTGGTTGTTTTGTCAT 58.912 33.333 0.00 0.00 0.00 3.06
682 1063 8.825667 AATGTATTGGTTGTTTTGTCATAACC 57.174 30.769 4.03 0.00 42.20 2.85
683 1064 6.750148 TGTATTGGTTGTTTTGTCATAACCC 58.250 36.000 0.00 0.49 41.39 4.11
684 1065 6.551601 TGTATTGGTTGTTTTGTCATAACCCT 59.448 34.615 0.00 0.00 41.39 4.34
685 1066 5.941555 TTGGTTGTTTTGTCATAACCCTT 57.058 34.783 0.00 0.00 41.39 3.95
686 1067 5.269505 TGGTTGTTTTGTCATAACCCTTG 57.730 39.130 0.00 0.00 41.39 3.61
687 1068 4.055360 GGTTGTTTTGTCATAACCCTTGC 58.945 43.478 4.03 0.00 37.25 4.01
688 1069 4.442192 GGTTGTTTTGTCATAACCCTTGCA 60.442 41.667 4.03 0.00 37.25 4.08
689 1070 5.296748 GTTGTTTTGTCATAACCCTTGCAT 58.703 37.500 4.03 0.00 0.00 3.96
690 1071 4.880759 TGTTTTGTCATAACCCTTGCATG 58.119 39.130 4.03 0.00 0.00 4.06
691 1072 3.591196 TTTGTCATAACCCTTGCATGC 57.409 42.857 11.82 11.82 0.00 4.06
692 1073 2.212812 TGTCATAACCCTTGCATGCA 57.787 45.000 18.46 18.46 0.00 3.96
693 1074 2.523245 TGTCATAACCCTTGCATGCAA 58.477 42.857 30.12 30.12 0.00 4.08
694 1075 2.896044 TGTCATAACCCTTGCATGCAAA 59.104 40.909 31.37 18.32 35.33 3.68
695 1076 3.323115 TGTCATAACCCTTGCATGCAAAA 59.677 39.130 31.37 13.16 35.33 2.44
696 1077 4.202295 TGTCATAACCCTTGCATGCAAAAA 60.202 37.500 31.37 16.27 35.33 1.94
697 1078 4.389687 GTCATAACCCTTGCATGCAAAAAG 59.610 41.667 31.37 23.78 35.33 2.27
698 1079 4.040217 TCATAACCCTTGCATGCAAAAAGT 59.960 37.500 31.37 24.38 35.33 2.66
699 1080 3.280197 AACCCTTGCATGCAAAAAGTT 57.720 38.095 31.37 27.77 35.33 2.66
700 1081 4.414337 AACCCTTGCATGCAAAAAGTTA 57.586 36.364 31.37 10.11 35.33 2.24
701 1082 4.414337 ACCCTTGCATGCAAAAAGTTAA 57.586 36.364 31.37 9.35 35.33 2.01
702 1083 4.971939 ACCCTTGCATGCAAAAAGTTAAT 58.028 34.783 31.37 10.42 35.33 1.40
703 1084 6.107901 ACCCTTGCATGCAAAAAGTTAATA 57.892 33.333 31.37 7.85 35.33 0.98
704 1085 5.931724 ACCCTTGCATGCAAAAAGTTAATAC 59.068 36.000 31.37 0.00 35.33 1.89
705 1086 5.931146 CCCTTGCATGCAAAAAGTTAATACA 59.069 36.000 31.37 7.12 35.33 2.29
706 1087 6.128580 CCCTTGCATGCAAAAAGTTAATACAC 60.129 38.462 31.37 0.00 35.33 2.90
707 1088 6.423302 CCTTGCATGCAAAAAGTTAATACACA 59.577 34.615 31.37 6.01 35.33 3.72
708 1089 7.118101 CCTTGCATGCAAAAAGTTAATACACAT 59.882 33.333 31.37 0.00 35.33 3.21
709 1090 7.959689 TGCATGCAAAAAGTTAATACACATT 57.040 28.000 20.30 0.00 0.00 2.71
710 1091 9.481340 TTGCATGCAAAAAGTTAATACACATTA 57.519 25.926 30.19 0.53 32.44 1.90
711 1092 9.481340 TGCATGCAAAAAGTTAATACACATTAA 57.519 25.926 20.30 0.00 34.85 1.40
729 1110 7.151999 ACATTAAAATATGTGACGGAAAGCA 57.848 32.000 0.00 0.00 37.36 3.91
730 1111 7.250569 ACATTAAAATATGTGACGGAAAGCAG 58.749 34.615 0.00 0.00 37.36 4.24
731 1112 7.120579 ACATTAAAATATGTGACGGAAAGCAGA 59.879 33.333 0.00 0.00 37.36 4.26
732 1113 5.957842 AAAATATGTGACGGAAAGCAGAA 57.042 34.783 0.00 0.00 0.00 3.02
733 1114 5.551760 AAATATGTGACGGAAAGCAGAAG 57.448 39.130 0.00 0.00 0.00 2.85
734 1115 2.550830 ATGTGACGGAAAGCAGAAGT 57.449 45.000 0.00 0.00 0.00 3.01
735 1116 3.678056 ATGTGACGGAAAGCAGAAGTA 57.322 42.857 0.00 0.00 0.00 2.24
736 1117 3.026630 TGTGACGGAAAGCAGAAGTAG 57.973 47.619 0.00 0.00 0.00 2.57
737 1118 2.364324 TGTGACGGAAAGCAGAAGTAGT 59.636 45.455 0.00 0.00 0.00 2.73
738 1119 3.570975 TGTGACGGAAAGCAGAAGTAGTA 59.429 43.478 0.00 0.00 0.00 1.82
739 1120 4.167268 GTGACGGAAAGCAGAAGTAGTAG 58.833 47.826 0.00 0.00 0.00 2.57
740 1121 4.077108 TGACGGAAAGCAGAAGTAGTAGA 58.923 43.478 0.00 0.00 0.00 2.59
741 1122 4.521639 TGACGGAAAGCAGAAGTAGTAGAA 59.478 41.667 0.00 0.00 0.00 2.10
742 1123 5.010314 TGACGGAAAGCAGAAGTAGTAGAAA 59.990 40.000 0.00 0.00 0.00 2.52
743 1124 6.038997 ACGGAAAGCAGAAGTAGTAGAAAT 57.961 37.500 0.00 0.00 0.00 2.17
744 1125 5.869888 ACGGAAAGCAGAAGTAGTAGAAATG 59.130 40.000 0.00 0.00 0.00 2.32
745 1126 6.100004 CGGAAAGCAGAAGTAGTAGAAATGA 58.900 40.000 0.00 0.00 0.00 2.57
746 1127 6.254589 CGGAAAGCAGAAGTAGTAGAAATGAG 59.745 42.308 0.00 0.00 0.00 2.90
747 1128 7.324178 GGAAAGCAGAAGTAGTAGAAATGAGA 58.676 38.462 0.00 0.00 0.00 3.27
748 1129 7.276878 GGAAAGCAGAAGTAGTAGAAATGAGAC 59.723 40.741 0.00 0.00 0.00 3.36
749 1130 7.475137 AAGCAGAAGTAGTAGAAATGAGACT 57.525 36.000 0.00 0.00 0.00 3.24
750 1131 7.475137 AGCAGAAGTAGTAGAAATGAGACTT 57.525 36.000 0.00 0.00 0.00 3.01
751 1132 8.582657 AGCAGAAGTAGTAGAAATGAGACTTA 57.417 34.615 0.00 0.00 0.00 2.24
752 1133 9.196139 AGCAGAAGTAGTAGAAATGAGACTTAT 57.804 33.333 0.00 0.00 0.00 1.73
767 1148 9.893305 AATGAGACTTATAAAACGGAAAAACTG 57.107 29.630 0.00 0.00 0.00 3.16
768 1149 8.665643 TGAGACTTATAAAACGGAAAAACTGA 57.334 30.769 0.00 0.00 0.00 3.41
769 1150 9.111613 TGAGACTTATAAAACGGAAAAACTGAA 57.888 29.630 0.00 0.00 0.00 3.02
770 1151 9.940166 GAGACTTATAAAACGGAAAAACTGAAA 57.060 29.630 0.00 0.00 0.00 2.69
778 1159 8.541133 AAAACGGAAAAACTGAAATTTTGAGA 57.459 26.923 2.47 0.00 32.12 3.27
779 1160 8.716646 AAACGGAAAAACTGAAATTTTGAGAT 57.283 26.923 2.47 0.00 32.12 2.75
780 1161 7.698836 ACGGAAAAACTGAAATTTTGAGATG 57.301 32.000 2.47 0.00 32.12 2.90
781 1162 7.488322 ACGGAAAAACTGAAATTTTGAGATGA 58.512 30.769 2.47 0.00 32.12 2.92
782 1163 7.649306 ACGGAAAAACTGAAATTTTGAGATGAG 59.351 33.333 2.47 0.00 32.12 2.90
783 1164 7.649306 CGGAAAAACTGAAATTTTGAGATGAGT 59.351 33.333 2.47 0.00 32.12 3.41
784 1165 8.972349 GGAAAAACTGAAATTTTGAGATGAGTC 58.028 33.333 2.47 0.00 32.12 3.36
785 1166 8.566008 AAAAACTGAAATTTTGAGATGAGTCG 57.434 30.769 2.47 0.00 32.12 4.18
786 1167 6.867662 AACTGAAATTTTGAGATGAGTCGT 57.132 33.333 2.47 0.00 0.00 4.34
787 1168 6.233430 ACTGAAATTTTGAGATGAGTCGTG 57.767 37.500 2.47 0.00 0.00 4.35
788 1169 5.760253 ACTGAAATTTTGAGATGAGTCGTGT 59.240 36.000 2.47 0.00 0.00 4.49
789 1170 6.929049 ACTGAAATTTTGAGATGAGTCGTGTA 59.071 34.615 2.47 0.00 0.00 2.90
790 1171 7.441157 ACTGAAATTTTGAGATGAGTCGTGTAA 59.559 33.333 2.47 0.00 0.00 2.41
791 1172 8.148807 TGAAATTTTGAGATGAGTCGTGTAAA 57.851 30.769 0.00 0.00 0.00 2.01
792 1173 8.067784 TGAAATTTTGAGATGAGTCGTGTAAAC 58.932 33.333 0.00 0.00 0.00 2.01
793 1174 5.917541 TTTTGAGATGAGTCGTGTAAACC 57.082 39.130 0.00 0.00 0.00 3.27
794 1175 3.211803 TGAGATGAGTCGTGTAAACCG 57.788 47.619 0.00 0.00 0.00 4.44
795 1176 2.094906 TGAGATGAGTCGTGTAAACCGG 60.095 50.000 0.00 0.00 0.00 5.28
796 1177 2.163010 GAGATGAGTCGTGTAAACCGGA 59.837 50.000 9.46 0.00 0.00 5.14
797 1178 2.559668 AGATGAGTCGTGTAAACCGGAA 59.440 45.455 9.46 0.00 0.00 4.30
798 1179 2.138596 TGAGTCGTGTAAACCGGAAC 57.861 50.000 9.46 3.62 0.00 3.62
816 1197 5.283457 GGAACGGAGGTAGTAGTAGTAGA 57.717 47.826 0.00 0.00 0.00 2.59
817 1198 5.863965 GGAACGGAGGTAGTAGTAGTAGAT 58.136 45.833 0.00 0.00 0.00 1.98
818 1199 6.295249 GGAACGGAGGTAGTAGTAGTAGATT 58.705 44.000 0.00 0.00 0.00 2.40
819 1200 7.445945 GGAACGGAGGTAGTAGTAGTAGATTA 58.554 42.308 0.00 0.00 0.00 1.75
820 1201 7.934120 GGAACGGAGGTAGTAGTAGTAGATTAA 59.066 40.741 0.00 0.00 0.00 1.40
821 1202 8.669946 AACGGAGGTAGTAGTAGTAGATTAAC 57.330 38.462 0.00 0.00 0.00 2.01
822 1203 8.028652 ACGGAGGTAGTAGTAGTAGATTAACT 57.971 38.462 0.00 0.00 0.00 2.24
823 1204 8.147704 ACGGAGGTAGTAGTAGTAGATTAACTC 58.852 40.741 0.00 0.00 0.00 3.01
824 1205 7.602265 CGGAGGTAGTAGTAGTAGATTAACTCC 59.398 44.444 13.25 13.25 40.16 3.85
825 1206 7.602265 GGAGGTAGTAGTAGTAGATTAACTCCG 59.398 44.444 10.06 0.00 35.86 4.63
826 1207 8.256356 AGGTAGTAGTAGTAGATTAACTCCGA 57.744 38.462 0.00 0.00 0.00 4.55
827 1208 8.709308 AGGTAGTAGTAGTAGATTAACTCCGAA 58.291 37.037 0.00 0.00 0.00 4.30
840 1221 1.305465 TCCGAATCGACTGGGGGAA 60.305 57.895 3.36 0.00 0.00 3.97
915 1299 5.013599 CCATTTCCAAATCCCAAACCCTAAA 59.986 40.000 0.00 0.00 0.00 1.85
932 1331 2.355484 AAACCCCTCCCCACTCTCCA 62.355 60.000 0.00 0.00 0.00 3.86
1244 1666 0.245539 CGCCCCTCTCGAACTGTTTA 59.754 55.000 0.00 0.00 0.00 2.01
1291 1713 0.317799 TTTCGGTCGATTTCGGGTCA 59.682 50.000 0.00 0.00 40.29 4.02
1374 1800 3.787001 GGCGCCTTAGCTCTGGGT 61.787 66.667 22.15 0.00 36.60 4.51
1552 2007 1.580942 GCCGTTGATTTGCTGCAGA 59.419 52.632 20.43 0.00 0.00 4.26
1715 2172 5.979517 GCATGGCTTTAGTTTTGATCCATAC 59.020 40.000 0.00 0.00 32.18 2.39
2017 5668 1.071228 ACACCAGGAGAAACGGGTAAC 59.929 52.381 0.00 0.00 31.05 2.50
2210 5875 1.202830 ACAAACCTTATGTGCCACGGA 60.203 47.619 0.00 0.00 0.00 4.69
2247 5912 4.744136 ATGCAATAATGATCGCACTCTG 57.256 40.909 0.00 0.00 37.17 3.35
2257 5922 1.114627 TCGCACTCTGCAGGTATGAT 58.885 50.000 15.13 0.00 45.36 2.45
2496 6389 0.767375 AGCCAGTGGTCTGTCACAAT 59.233 50.000 11.74 0.00 39.93 2.71
2664 6557 5.072736 TCACTGGATGGAATAGCATGAAGAT 59.927 40.000 0.00 0.00 0.00 2.40
2693 6586 7.693969 ACAAATAAGGATCTGGTTGAGAAAG 57.306 36.000 0.00 0.00 33.12 2.62
2892 6791 1.694150 CTATTGTGGCCCTGCTAGCTA 59.306 52.381 17.23 1.31 0.00 3.32
2893 6792 0.181350 ATTGTGGCCCTGCTAGCTAC 59.819 55.000 17.23 6.14 41.64 3.58
2894 6793 0.909610 TTGTGGCCCTGCTAGCTACT 60.910 55.000 17.23 0.00 41.80 2.57
2914 6814 6.691388 GCTACTGGTTGTGAACTTTTTACTTG 59.309 38.462 0.00 0.00 0.00 3.16
3037 6937 4.901849 TCTCATTAGAGGGTTCATAGGGTG 59.098 45.833 0.00 0.00 42.34 4.61
3231 7255 9.765295 TCTAGTAATTTAACTTGTACTCCCTCT 57.235 33.333 0.00 0.00 0.00 3.69
3408 7434 6.183360 TGCTAGCAGAGTATCAACATCTGATT 60.183 38.462 14.93 0.00 42.46 2.57
3546 7575 8.908786 ATTTTCTATCGATGGAATAGAAGCAA 57.091 30.769 22.78 13.41 37.93 3.91
3612 7641 9.128107 CACAATATGAACCTGAAACATGTTTAC 57.872 33.333 23.33 16.39 32.11 2.01
3802 7841 3.866883 GGCTTTATTTGCCTAGCACAA 57.133 42.857 0.00 0.00 46.38 3.33
3950 7989 3.493440 GGACCTTTAACGGCGGCG 61.493 66.667 31.06 31.06 0.00 6.46
4256 8660 4.572389 CGCTGATCTTTGTAGTTAATGCCT 59.428 41.667 0.00 0.00 0.00 4.75
4414 8823 8.412456 TGCAACATTTTCTTTTCTAATGTCAGA 58.588 29.630 0.00 0.00 40.54 3.27
4447 11991 7.282585 TGAAATGTCTTTACTAGCTATGCCAT 58.717 34.615 0.00 0.00 0.00 4.40
4487 12031 7.649306 TGAAAGTTTTCTGAAAGCTTATGAAGC 59.351 33.333 25.63 14.51 44.77 3.86
4508 12052 3.667360 CGGTGCTGATATTGGATGATCA 58.333 45.455 0.00 0.00 0.00 2.92
4525 12069 5.677319 TGATCAAGATACTTTCGGGTCTT 57.323 39.130 0.00 0.00 0.00 3.01
5211 12800 8.266473 AGAATTCAGTTCTCTTATGATTGCTCT 58.734 33.333 8.44 0.00 43.74 4.09
5302 12892 5.422331 TGTAGAGGTTAGTTGGATTGAGAGG 59.578 44.000 0.00 0.00 0.00 3.69
5338 12937 2.003937 TGTTTAACCCTTCTTGCCCC 57.996 50.000 0.00 0.00 0.00 5.80
5525 13206 1.132453 CACTGTGCTGATGATTGCTGG 59.868 52.381 0.00 0.00 0.00 4.85
5661 13346 2.009774 GTTCGAACCATGACATCCAGG 58.990 52.381 17.68 0.00 0.00 4.45
6009 13697 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
6010 13698 1.200519 ATAGTACGCAGCCTTTCCCA 58.799 50.000 0.00 0.00 0.00 4.37
6011 13699 0.535335 TAGTACGCAGCCTTTCCCAG 59.465 55.000 0.00 0.00 0.00 4.45
6012 13700 1.003718 GTACGCAGCCTTTCCCAGT 60.004 57.895 0.00 0.00 0.00 4.00
6013 13701 0.605589 GTACGCAGCCTTTCCCAGTT 60.606 55.000 0.00 0.00 0.00 3.16
6014 13702 0.109723 TACGCAGCCTTTCCCAGTTT 59.890 50.000 0.00 0.00 0.00 2.66
6015 13703 1.172812 ACGCAGCCTTTCCCAGTTTC 61.173 55.000 0.00 0.00 0.00 2.78
6016 13704 1.866853 CGCAGCCTTTCCCAGTTTCC 61.867 60.000 0.00 0.00 0.00 3.13
6026 13714 3.732048 TCCCAGTTTCCCTACATTTCC 57.268 47.619 0.00 0.00 0.00 3.13
6261 13950 3.947834 GCATAGTCATTAGCCTGTTTGGT 59.052 43.478 0.00 0.00 38.35 3.67
6454 14148 0.607217 CCCTGCAACATGCTGAGTGA 60.607 55.000 10.31 0.00 45.31 3.41
7030 14800 2.441375 TGATGTCCAAAGAACCACTGGA 59.559 45.455 0.71 0.00 36.89 3.86
7083 14853 4.692625 CCTCACGGGCTCTATAATTGATTG 59.307 45.833 0.00 0.00 0.00 2.67
7557 15360 4.682787 CTCCTCGTGCTATTGATGTACAA 58.317 43.478 0.00 0.00 42.95 2.41
7642 15448 2.509916 CCCAGGAGGAGATGCTGC 59.490 66.667 0.00 0.00 45.53 5.25
7902 17443 3.876309 AGCCTCACTCCCTGTTTAAAA 57.124 42.857 0.00 0.00 0.00 1.52
8066 18667 0.963962 CTCAACCTTGCTTGCATGGT 59.036 50.000 22.26 22.26 34.55 3.55
8095 18779 7.987458 CAGACAAGGCAGGTATTAGAATTTAGA 59.013 37.037 0.00 0.00 0.00 2.10
8357 19089 5.719563 TCGGATTCATGGGCTGTAGATATTA 59.280 40.000 0.00 0.00 0.00 0.98
8404 19138 2.649331 ATGCTGCTCTCATTTTGTGC 57.351 45.000 0.00 0.00 0.00 4.57
8481 19215 1.620822 GGCCATTGATACCATCCACC 58.379 55.000 0.00 0.00 0.00 4.61
8623 19364 3.256631 GGTAGTACGGGAGTTGTTCTTCA 59.743 47.826 0.00 0.00 43.33 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.701651 TGGAGTTGATGCTTCCAACAATAG 59.298 41.667 15.13 0.00 44.54 1.73
233 274 3.149981 TCGTTATGTTTCCAATGTGCCA 58.850 40.909 0.00 0.00 0.00 4.92
279 322 3.066621 CAGTGCTAGTGCTTTTGTCCAAA 59.933 43.478 0.00 0.00 40.48 3.28
405 479 9.890629 TTGCTTCTTACACATAATATCACTCTT 57.109 29.630 0.00 0.00 0.00 2.85
407 481 8.269424 CGTTGCTTCTTACACATAATATCACTC 58.731 37.037 0.00 0.00 0.00 3.51
408 482 7.979537 TCGTTGCTTCTTACACATAATATCACT 59.020 33.333 0.00 0.00 0.00 3.41
409 483 8.126871 TCGTTGCTTCTTACACATAATATCAC 57.873 34.615 0.00 0.00 0.00 3.06
410 484 8.887036 ATCGTTGCTTCTTACACATAATATCA 57.113 30.769 0.00 0.00 0.00 2.15
481 574 8.032451 GCCACTGGATTTTAGCAAGTTAATTAA 58.968 33.333 0.00 0.00 0.00 1.40
486 579 3.438781 CGCCACTGGATTTTAGCAAGTTA 59.561 43.478 0.00 0.00 0.00 2.24
513 606 8.205512 TGAAACTAATAATGCTGATTACCCGTA 58.794 33.333 0.00 0.00 0.00 4.02
516 609 8.451908 ACTGAAACTAATAATGCTGATTACCC 57.548 34.615 0.00 0.00 0.00 3.69
552 646 1.229428 CAGCGCTCCTTCTGTTTGAA 58.771 50.000 7.13 0.00 0.00 2.69
558 652 1.216122 GATAAGCAGCGCTCCTTCTG 58.784 55.000 18.75 1.56 38.25 3.02
606 987 5.416326 GCATTCTATCGGACCAGTAGATAGT 59.584 44.000 16.09 3.28 42.50 2.12
620 1001 3.677121 GGCATCAGTAGTGCATTCTATCG 59.323 47.826 0.00 0.00 44.25 2.92
631 1012 1.409427 GAACCGCTAGGCATCAGTAGT 59.591 52.381 0.00 0.00 42.76 2.73
632 1013 1.269831 GGAACCGCTAGGCATCAGTAG 60.270 57.143 0.00 0.00 42.76 2.57
633 1014 0.750850 GGAACCGCTAGGCATCAGTA 59.249 55.000 0.00 0.00 42.76 2.74
634 1015 1.522569 GGAACCGCTAGGCATCAGT 59.477 57.895 0.00 0.00 42.76 3.41
635 1016 1.227674 GGGAACCGCTAGGCATCAG 60.228 63.158 0.00 0.00 40.86 2.90
636 1017 2.908015 GGGAACCGCTAGGCATCA 59.092 61.111 0.00 0.00 40.86 3.07
648 1029 6.584185 AACAACCAATACATTACAGGGAAC 57.416 37.500 0.00 0.00 0.00 3.62
649 1030 7.070074 ACAAAACAACCAATACATTACAGGGAA 59.930 33.333 0.00 0.00 0.00 3.97
650 1031 6.551601 ACAAAACAACCAATACATTACAGGGA 59.448 34.615 0.00 0.00 0.00 4.20
651 1032 6.754193 ACAAAACAACCAATACATTACAGGG 58.246 36.000 0.00 0.00 0.00 4.45
652 1033 7.429633 TGACAAAACAACCAATACATTACAGG 58.570 34.615 0.00 0.00 0.00 4.00
656 1037 9.915629 GGTTATGACAAAACAACCAATACATTA 57.084 29.630 0.00 0.00 40.17 1.90
657 1038 7.875554 GGGTTATGACAAAACAACCAATACATT 59.124 33.333 11.47 0.00 41.84 2.71
658 1039 7.234577 AGGGTTATGACAAAACAACCAATACAT 59.765 33.333 11.47 0.00 41.84 2.29
659 1040 6.551601 AGGGTTATGACAAAACAACCAATACA 59.448 34.615 11.47 0.00 41.84 2.29
660 1041 6.988522 AGGGTTATGACAAAACAACCAATAC 58.011 36.000 11.47 0.00 41.84 1.89
661 1042 7.437748 CAAGGGTTATGACAAAACAACCAATA 58.562 34.615 11.47 0.00 41.84 1.90
662 1043 6.287525 CAAGGGTTATGACAAAACAACCAAT 58.712 36.000 11.47 1.05 41.84 3.16
663 1044 5.665459 CAAGGGTTATGACAAAACAACCAA 58.335 37.500 11.47 0.00 41.84 3.67
664 1045 4.442192 GCAAGGGTTATGACAAAACAACCA 60.442 41.667 11.47 0.00 41.84 3.67
665 1046 4.055360 GCAAGGGTTATGACAAAACAACC 58.945 43.478 0.00 0.00 39.79 3.77
666 1047 4.688021 TGCAAGGGTTATGACAAAACAAC 58.312 39.130 0.00 0.00 0.00 3.32
667 1048 5.295950 CATGCAAGGGTTATGACAAAACAA 58.704 37.500 0.00 0.00 0.00 2.83
668 1049 4.798924 GCATGCAAGGGTTATGACAAAACA 60.799 41.667 14.21 0.00 0.00 2.83
669 1050 3.679502 GCATGCAAGGGTTATGACAAAAC 59.320 43.478 14.21 0.00 0.00 2.43
670 1051 3.323115 TGCATGCAAGGGTTATGACAAAA 59.677 39.130 20.30 0.00 0.00 2.44
671 1052 2.896044 TGCATGCAAGGGTTATGACAAA 59.104 40.909 20.30 0.00 0.00 2.83
672 1053 2.523245 TGCATGCAAGGGTTATGACAA 58.477 42.857 20.30 0.00 0.00 3.18
673 1054 2.212812 TGCATGCAAGGGTTATGACA 57.787 45.000 20.30 0.00 0.00 3.58
674 1055 3.591196 TTTGCATGCAAGGGTTATGAC 57.409 42.857 30.25 0.00 37.24 3.06
675 1056 4.040217 ACTTTTTGCATGCAAGGGTTATGA 59.960 37.500 30.25 12.75 37.24 2.15
676 1057 4.317488 ACTTTTTGCATGCAAGGGTTATG 58.683 39.130 30.25 19.11 37.24 1.90
677 1058 4.622260 ACTTTTTGCATGCAAGGGTTAT 57.378 36.364 30.25 14.19 37.24 1.89
678 1059 4.414337 AACTTTTTGCATGCAAGGGTTA 57.586 36.364 30.25 14.96 37.24 2.85
679 1060 3.280197 AACTTTTTGCATGCAAGGGTT 57.720 38.095 30.25 28.11 37.24 4.11
680 1061 4.414337 TTAACTTTTTGCATGCAAGGGT 57.586 36.364 30.25 24.92 37.24 4.34
681 1062 5.931146 TGTATTAACTTTTTGCATGCAAGGG 59.069 36.000 30.25 24.36 37.24 3.95
682 1063 6.423302 TGTGTATTAACTTTTTGCATGCAAGG 59.577 34.615 30.25 24.66 37.24 3.61
683 1064 7.405469 TGTGTATTAACTTTTTGCATGCAAG 57.595 32.000 30.25 22.39 37.24 4.01
684 1065 7.959689 ATGTGTATTAACTTTTTGCATGCAA 57.040 28.000 28.80 28.80 0.00 4.08
685 1066 7.959689 AATGTGTATTAACTTTTTGCATGCA 57.040 28.000 18.46 18.46 0.00 3.96
705 1086 7.120579 TCTGCTTTCCGTCACATATTTTAATGT 59.879 33.333 0.00 0.00 40.75 2.71
706 1087 7.471721 TCTGCTTTCCGTCACATATTTTAATG 58.528 34.615 0.00 0.00 0.00 1.90
707 1088 7.624360 TCTGCTTTCCGTCACATATTTTAAT 57.376 32.000 0.00 0.00 0.00 1.40
708 1089 7.174253 ACTTCTGCTTTCCGTCACATATTTTAA 59.826 33.333 0.00 0.00 0.00 1.52
709 1090 6.653320 ACTTCTGCTTTCCGTCACATATTTTA 59.347 34.615 0.00 0.00 0.00 1.52
710 1091 5.473504 ACTTCTGCTTTCCGTCACATATTTT 59.526 36.000 0.00 0.00 0.00 1.82
711 1092 5.003804 ACTTCTGCTTTCCGTCACATATTT 58.996 37.500 0.00 0.00 0.00 1.40
712 1093 4.579869 ACTTCTGCTTTCCGTCACATATT 58.420 39.130 0.00 0.00 0.00 1.28
713 1094 4.207891 ACTTCTGCTTTCCGTCACATAT 57.792 40.909 0.00 0.00 0.00 1.78
714 1095 3.678056 ACTTCTGCTTTCCGTCACATA 57.322 42.857 0.00 0.00 0.00 2.29
715 1096 2.550830 ACTTCTGCTTTCCGTCACAT 57.449 45.000 0.00 0.00 0.00 3.21
716 1097 2.364324 ACTACTTCTGCTTTCCGTCACA 59.636 45.455 0.00 0.00 0.00 3.58
717 1098 3.027974 ACTACTTCTGCTTTCCGTCAC 57.972 47.619 0.00 0.00 0.00 3.67
718 1099 4.077108 TCTACTACTTCTGCTTTCCGTCA 58.923 43.478 0.00 0.00 0.00 4.35
719 1100 4.698583 TCTACTACTTCTGCTTTCCGTC 57.301 45.455 0.00 0.00 0.00 4.79
720 1101 5.464030 TTTCTACTACTTCTGCTTTCCGT 57.536 39.130 0.00 0.00 0.00 4.69
721 1102 6.100004 TCATTTCTACTACTTCTGCTTTCCG 58.900 40.000 0.00 0.00 0.00 4.30
722 1103 7.276878 GTCTCATTTCTACTACTTCTGCTTTCC 59.723 40.741 0.00 0.00 0.00 3.13
723 1104 8.032451 AGTCTCATTTCTACTACTTCTGCTTTC 58.968 37.037 0.00 0.00 0.00 2.62
724 1105 7.902087 AGTCTCATTTCTACTACTTCTGCTTT 58.098 34.615 0.00 0.00 0.00 3.51
725 1106 7.475137 AGTCTCATTTCTACTACTTCTGCTT 57.525 36.000 0.00 0.00 0.00 3.91
726 1107 7.475137 AAGTCTCATTTCTACTACTTCTGCT 57.525 36.000 0.00 0.00 0.00 4.24
741 1122 9.893305 CAGTTTTTCCGTTTTATAAGTCTCATT 57.107 29.630 0.00 0.00 0.00 2.57
742 1123 9.280174 TCAGTTTTTCCGTTTTATAAGTCTCAT 57.720 29.630 0.00 0.00 0.00 2.90
743 1124 8.665643 TCAGTTTTTCCGTTTTATAAGTCTCA 57.334 30.769 0.00 0.00 0.00 3.27
744 1125 9.940166 TTTCAGTTTTTCCGTTTTATAAGTCTC 57.060 29.630 0.00 0.00 0.00 3.36
752 1133 9.640963 TCTCAAAATTTCAGTTTTTCCGTTTTA 57.359 25.926 0.00 0.00 0.00 1.52
753 1134 8.541133 TCTCAAAATTTCAGTTTTTCCGTTTT 57.459 26.923 0.00 0.00 0.00 2.43
754 1135 8.603181 CATCTCAAAATTTCAGTTTTTCCGTTT 58.397 29.630 0.00 0.00 0.00 3.60
755 1136 7.978975 TCATCTCAAAATTTCAGTTTTTCCGTT 59.021 29.630 0.00 0.00 0.00 4.44
756 1137 7.488322 TCATCTCAAAATTTCAGTTTTTCCGT 58.512 30.769 0.00 0.00 0.00 4.69
757 1138 7.649306 ACTCATCTCAAAATTTCAGTTTTTCCG 59.351 33.333 0.00 0.00 0.00 4.30
758 1139 8.877808 ACTCATCTCAAAATTTCAGTTTTTCC 57.122 30.769 0.00 0.00 0.00 3.13
759 1140 8.685536 CGACTCATCTCAAAATTTCAGTTTTTC 58.314 33.333 0.00 0.00 0.00 2.29
760 1141 8.190784 ACGACTCATCTCAAAATTTCAGTTTTT 58.809 29.630 0.00 0.00 0.00 1.94
761 1142 7.645340 CACGACTCATCTCAAAATTTCAGTTTT 59.355 33.333 0.00 0.00 0.00 2.43
762 1143 7.134815 CACGACTCATCTCAAAATTTCAGTTT 58.865 34.615 0.00 0.00 0.00 2.66
763 1144 6.260936 ACACGACTCATCTCAAAATTTCAGTT 59.739 34.615 0.00 0.00 0.00 3.16
764 1145 5.760253 ACACGACTCATCTCAAAATTTCAGT 59.240 36.000 0.00 0.00 0.00 3.41
765 1146 6.233430 ACACGACTCATCTCAAAATTTCAG 57.767 37.500 0.00 0.00 0.00 3.02
766 1147 7.722795 TTACACGACTCATCTCAAAATTTCA 57.277 32.000 0.00 0.00 0.00 2.69
767 1148 7.534239 GGTTTACACGACTCATCTCAAAATTTC 59.466 37.037 0.00 0.00 0.00 2.17
768 1149 7.360361 GGTTTACACGACTCATCTCAAAATTT 58.640 34.615 0.00 0.00 0.00 1.82
769 1150 6.347402 CGGTTTACACGACTCATCTCAAAATT 60.347 38.462 0.00 0.00 0.00 1.82
770 1151 5.120208 CGGTTTACACGACTCATCTCAAAAT 59.880 40.000 0.00 0.00 0.00 1.82
771 1152 4.446385 CGGTTTACACGACTCATCTCAAAA 59.554 41.667 0.00 0.00 0.00 2.44
772 1153 3.985279 CGGTTTACACGACTCATCTCAAA 59.015 43.478 0.00 0.00 0.00 2.69
773 1154 3.571571 CGGTTTACACGACTCATCTCAA 58.428 45.455 0.00 0.00 0.00 3.02
774 1155 2.094906 CCGGTTTACACGACTCATCTCA 60.095 50.000 0.00 0.00 0.00 3.27
775 1156 2.163010 TCCGGTTTACACGACTCATCTC 59.837 50.000 0.00 0.00 0.00 2.75
776 1157 2.165167 TCCGGTTTACACGACTCATCT 58.835 47.619 0.00 0.00 0.00 2.90
777 1158 2.642139 TCCGGTTTACACGACTCATC 57.358 50.000 0.00 0.00 0.00 2.92
778 1159 2.680577 GTTCCGGTTTACACGACTCAT 58.319 47.619 0.00 0.00 0.00 2.90
779 1160 1.600164 CGTTCCGGTTTACACGACTCA 60.600 52.381 0.00 0.00 34.49 3.41
780 1161 1.055338 CGTTCCGGTTTACACGACTC 58.945 55.000 0.00 0.00 34.49 3.36
781 1162 0.318955 CCGTTCCGGTTTACACGACT 60.319 55.000 0.00 0.00 42.73 4.18
782 1163 2.144362 CCGTTCCGGTTTACACGAC 58.856 57.895 0.00 0.00 42.73 4.34
783 1164 4.651585 CCGTTCCGGTTTACACGA 57.348 55.556 0.00 0.00 42.73 4.35
793 1174 2.911484 ACTACTACTACCTCCGTTCCG 58.089 52.381 0.00 0.00 0.00 4.30
794 1175 5.283457 TCTACTACTACTACCTCCGTTCC 57.717 47.826 0.00 0.00 0.00 3.62
795 1176 8.769891 GTTAATCTACTACTACTACCTCCGTTC 58.230 40.741 0.00 0.00 0.00 3.95
796 1177 8.490311 AGTTAATCTACTACTACTACCTCCGTT 58.510 37.037 0.00 0.00 0.00 4.44
797 1178 8.028652 AGTTAATCTACTACTACTACCTCCGT 57.971 38.462 0.00 0.00 0.00 4.69
798 1179 7.602265 GGAGTTAATCTACTACTACTACCTCCG 59.398 44.444 0.00 0.00 0.00 4.63
799 1180 7.602265 CGGAGTTAATCTACTACTACTACCTCC 59.398 44.444 0.00 0.00 0.00 4.30
800 1181 8.364142 TCGGAGTTAATCTACTACTACTACCTC 58.636 40.741 0.00 0.00 0.00 3.85
801 1182 8.256356 TCGGAGTTAATCTACTACTACTACCT 57.744 38.462 0.00 0.00 0.00 3.08
802 1183 8.894768 TTCGGAGTTAATCTACTACTACTACC 57.105 38.462 0.00 0.00 0.00 3.18
804 1185 9.416794 CGATTCGGAGTTAATCTACTACTACTA 57.583 37.037 0.00 0.00 32.29 1.82
805 1186 8.147058 TCGATTCGGAGTTAATCTACTACTACT 58.853 37.037 6.18 0.00 32.29 2.57
806 1187 8.220434 GTCGATTCGGAGTTAATCTACTACTAC 58.780 40.741 6.18 0.00 32.29 2.73
807 1188 8.147058 AGTCGATTCGGAGTTAATCTACTACTA 58.853 37.037 6.18 0.00 37.51 1.82
808 1189 6.991531 AGTCGATTCGGAGTTAATCTACTACT 59.008 38.462 6.18 0.00 37.51 2.57
809 1190 7.070798 CAGTCGATTCGGAGTTAATCTACTAC 58.929 42.308 6.18 0.00 37.30 2.73
810 1191 6.204301 CCAGTCGATTCGGAGTTAATCTACTA 59.796 42.308 6.18 0.00 37.30 1.82
811 1192 5.008811 CCAGTCGATTCGGAGTTAATCTACT 59.991 44.000 6.18 0.00 38.93 2.57
812 1193 5.213675 CCAGTCGATTCGGAGTTAATCTAC 58.786 45.833 6.18 0.00 32.20 2.59
813 1194 4.277672 CCCAGTCGATTCGGAGTTAATCTA 59.722 45.833 6.18 0.00 32.29 1.98
814 1195 3.068307 CCCAGTCGATTCGGAGTTAATCT 59.932 47.826 6.18 0.00 32.29 2.40
815 1196 3.381949 CCCAGTCGATTCGGAGTTAATC 58.618 50.000 6.18 0.00 0.00 1.75
816 1197 2.102588 CCCCAGTCGATTCGGAGTTAAT 59.897 50.000 6.18 0.00 0.00 1.40
817 1198 1.479323 CCCCAGTCGATTCGGAGTTAA 59.521 52.381 6.18 0.00 0.00 2.01
818 1199 1.108776 CCCCAGTCGATTCGGAGTTA 58.891 55.000 6.18 0.00 0.00 2.24
819 1200 1.614241 CCCCCAGTCGATTCGGAGTT 61.614 60.000 6.18 0.00 0.00 3.01
820 1201 2.058595 CCCCCAGTCGATTCGGAGT 61.059 63.158 6.18 0.00 0.00 3.85
821 1202 1.327690 TTCCCCCAGTCGATTCGGAG 61.328 60.000 6.18 0.00 0.00 4.63
822 1203 1.305465 TTCCCCCAGTCGATTCGGA 60.305 57.895 6.18 0.00 0.00 4.55
823 1204 1.153429 GTTCCCCCAGTCGATTCGG 60.153 63.158 6.18 0.00 0.00 4.30
824 1205 1.153429 GGTTCCCCCAGTCGATTCG 60.153 63.158 0.00 0.00 0.00 3.34
825 1206 1.153429 CGGTTCCCCCAGTCGATTC 60.153 63.158 0.00 0.00 0.00 2.52
826 1207 2.666098 CCGGTTCCCCCAGTCGATT 61.666 63.158 0.00 0.00 0.00 3.34
827 1208 3.081409 CCGGTTCCCCCAGTCGAT 61.081 66.667 0.00 0.00 0.00 3.59
840 1221 2.443016 TTTTGGCTTGCCACCGGT 60.443 55.556 14.52 0.00 0.00 5.28
881 1265 1.766951 TTGGAAATGGGGAGGGAGAA 58.233 50.000 0.00 0.00 0.00 2.87
915 1299 2.813165 TTGGAGAGTGGGGAGGGGT 61.813 63.158 0.00 0.00 0.00 4.95
953 1366 2.608550 GGGAATGTGGGACCGGGAA 61.609 63.158 6.32 0.00 0.00 3.97
958 1371 2.750237 GCGTGGGAATGTGGGACC 60.750 66.667 0.00 0.00 0.00 4.46
1010 1424 1.667830 CGCTTCTTCTTCGGCACCA 60.668 57.895 0.00 0.00 0.00 4.17
1076 1493 2.825836 CCATGGAGCGGTGCTTCC 60.826 66.667 5.56 0.00 39.88 3.46
1207 1624 2.175811 GGGAAATGCGCACGTGAC 59.824 61.111 22.23 11.12 0.00 3.67
1244 1666 3.516578 GCCTCAACAGCGTAAGAGT 57.483 52.632 0.00 0.00 43.02 3.24
1291 1713 3.055719 CGCCAACCCGAAGCACAT 61.056 61.111 0.00 0.00 0.00 3.21
1374 1800 6.381420 TCCATCCACCAAACAAAAACTAAGAA 59.619 34.615 0.00 0.00 0.00 2.52
1593 2050 7.888514 AAGGGATGGATATAAATACACCTCA 57.111 36.000 0.00 0.00 25.25 3.86
2017 5668 3.970610 CACGTGAGCAATCAAGAAAACTG 59.029 43.478 10.90 0.00 0.00 3.16
2240 5905 4.708726 AAAAATCATACCTGCAGAGTGC 57.291 40.909 17.39 0.00 45.29 4.40
2431 6120 5.143369 GCCTCATCATAAATTCCTTCCCTT 58.857 41.667 0.00 0.00 0.00 3.95
2496 6389 6.070481 TCACTGAAACTGTACCCTATTGCATA 60.070 38.462 0.00 0.00 0.00 3.14
2664 6557 8.160765 TCTCAACCAGATCCTTATTTGTTAACA 58.839 33.333 3.59 3.59 0.00 2.41
2693 6586 7.224949 GGTACATTACTTTGCAGGATTACTCTC 59.775 40.741 0.00 0.00 0.00 3.20
2892 6791 5.623596 GCCAAGTAAAAAGTTCACAACCAGT 60.624 40.000 0.00 0.00 0.00 4.00
2893 6792 4.803613 GCCAAGTAAAAAGTTCACAACCAG 59.196 41.667 0.00 0.00 0.00 4.00
2894 6793 4.382147 GGCCAAGTAAAAAGTTCACAACCA 60.382 41.667 0.00 0.00 0.00 3.67
2914 6814 8.907885 ACTTTATCATTTAAGAAAGATCAGGCC 58.092 33.333 0.00 0.00 33.90 5.19
3037 6937 7.906160 ACACAATCATACTTAAATACGTGAGC 58.094 34.615 0.00 0.00 0.00 4.26
3408 7434 3.004629 CCACAAGCATCAACTAGCAAACA 59.995 43.478 0.00 0.00 0.00 2.83
3480 7507 8.440059 CGCAGAGTTGTATGTTTAAAAGATACA 58.560 33.333 13.60 13.60 43.38 2.29
3481 7508 7.903431 CCGCAGAGTTGTATGTTTAAAAGATAC 59.097 37.037 10.00 10.00 37.94 2.24
3546 7575 3.484407 GAGCTATGGAATTGGACATGCT 58.516 45.455 0.00 0.00 35.62 3.79
3612 7641 2.481185 GGCCACATGTGCAAGATTTTTG 59.519 45.455 20.81 3.78 0.00 2.44
3870 7909 3.636381 CTGTCTCTTTGCCTTTTTCTGC 58.364 45.455 0.00 0.00 0.00 4.26
3950 7989 1.589716 GCACAACTGCAGGATGACCC 61.590 60.000 23.60 10.45 43.62 4.46
4036 8075 5.748402 TCTGGAAATTCATACTGCATGAGT 58.252 37.500 0.00 0.00 44.47 3.41
4414 8823 6.370166 GCTAGTAAAGACATTTCAGCAGAACT 59.630 38.462 0.00 0.00 32.39 3.01
4487 12031 3.667360 TGATCATCCAATATCAGCACCG 58.333 45.455 0.00 0.00 0.00 4.94
4508 12052 6.924060 CGATCATAAAGACCCGAAAGTATCTT 59.076 38.462 0.00 0.00 35.60 2.40
4525 12069 9.899226 CAACTCATGAGTAAGATACGATCATAA 57.101 33.333 28.10 0.00 41.58 1.90
5123 12712 7.491682 ACTATTGGGTGCAACAATAATCAATC 58.508 34.615 19.61 0.00 39.51 2.67
5211 12800 2.199652 CGGGGCCTGCACAAAAAGA 61.200 57.895 0.84 0.00 0.00 2.52
5302 12892 8.074370 GGGTTAAACAAAGAGAGTTCACATAAC 58.926 37.037 0.00 0.00 0.00 1.89
5525 13206 2.223665 ACAAGCAAGAAAAGAGTGCAGC 60.224 45.455 0.00 0.00 40.83 5.25
5590 13271 6.852853 GCACATTATATGAACAGTTCAATCCG 59.147 38.462 19.92 9.13 43.95 4.18
5661 13346 3.630312 TCTCCAACAGGCAAGTGTTTAAC 59.370 43.478 0.00 0.00 38.65 2.01
6009 13697 2.432444 TGCGGAAATGTAGGGAAACTG 58.568 47.619 0.00 0.00 0.00 3.16
6010 13698 2.871096 TGCGGAAATGTAGGGAAACT 57.129 45.000 0.00 0.00 0.00 2.66
6011 13699 3.078837 TCTTGCGGAAATGTAGGGAAAC 58.921 45.455 0.00 0.00 0.00 2.78
6012 13700 3.343617 CTCTTGCGGAAATGTAGGGAAA 58.656 45.455 0.00 0.00 0.00 3.13
6013 13701 2.355716 CCTCTTGCGGAAATGTAGGGAA 60.356 50.000 0.00 0.00 0.00 3.97
6014 13702 1.209504 CCTCTTGCGGAAATGTAGGGA 59.790 52.381 0.00 0.00 0.00 4.20
6015 13703 1.668419 CCTCTTGCGGAAATGTAGGG 58.332 55.000 0.00 0.00 0.00 3.53
6016 13704 1.017387 GCCTCTTGCGGAAATGTAGG 58.983 55.000 0.00 0.00 0.00 3.18
6261 13950 0.327480 ATCCCTCCATACCTGTGCCA 60.327 55.000 0.00 0.00 0.00 4.92
6454 14148 5.540911 CATAAAACATGGCTGGTCAAAAGT 58.459 37.500 0.00 0.00 0.00 2.66
6923 14687 4.002982 GCATACAACTGACATCCTGAACA 58.997 43.478 0.00 0.00 0.00 3.18
7030 14800 7.201644 CCGTATTTCTTTTCAGTGTCAGCATAT 60.202 37.037 0.00 0.00 0.00 1.78
7186 14956 3.660501 AGCTGAACGGCGAATATATCA 57.339 42.857 16.62 6.97 37.29 2.15
7199 14969 3.375299 CCAGTTACCTGCATAAGCTGAAC 59.625 47.826 8.03 0.00 41.71 3.18
7642 15448 1.728971 GACCATGTCGCTCTTGTTCTG 59.271 52.381 0.00 0.00 0.00 3.02
7902 17443 6.563010 GCAATTCTACGACGTACGAGTAGTAT 60.563 42.308 32.46 28.84 45.77 2.12
8066 18667 4.286707 TCTAATACCTGCCTTGTCTGCTA 58.713 43.478 0.00 0.00 0.00 3.49
8095 18779 0.105964 TACGTCACTTTGCCAGCAGT 59.894 50.000 0.00 0.00 0.00 4.40
8319 19051 3.118261 TGAATCCGAATGAAGAGAAGGGG 60.118 47.826 0.00 0.00 0.00 4.79
8357 19089 7.669427 TGTTCTAAAACTTGATTGCCATCAAT 58.331 30.769 13.14 2.18 46.32 2.57
8404 19138 2.398554 CCAAATCGTCCAGCACCCG 61.399 63.158 0.00 0.00 0.00 5.28
8623 19364 1.414181 CCAGTGCTTCGATATGGTCCT 59.586 52.381 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.