Multiple sequence alignment - TraesCS1D01G080900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G080900 chr1D 100.000 4554 0 0 1 4554 63370980 63375533 0.000000e+00 8410.0
1 TraesCS1D01G080900 chr1A 91.873 3765 207 31 312 4018 62024816 62021093 0.000000e+00 5166.0
2 TraesCS1D01G080900 chr1A 93.556 450 29 0 4055 4504 62021087 62020638 0.000000e+00 671.0
3 TraesCS1D01G080900 chr1A 88.060 67 8 0 2 68 62024886 62024820 3.780000e-11 80.5
4 TraesCS1D01G080900 chr1B 90.657 1873 111 28 2157 4015 101221925 101223747 0.000000e+00 2431.0
5 TraesCS1D01G080900 chr1B 90.149 1005 51 13 301 1294 101220956 101221923 0.000000e+00 1264.0
6 TraesCS1D01G080900 chr1B 82.489 474 60 13 4029 4498 101224396 101224850 1.190000e-105 394.0
7 TraesCS1D01G080900 chr2B 77.990 209 42 4 74 280 505013242 505013036 1.330000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G080900 chr1D 63370980 63375533 4553 False 8410.0 8410 100.000 1 4554 1 chr1D.!!$F1 4553
1 TraesCS1D01G080900 chr1A 62020638 62024886 4248 True 1972.5 5166 91.163 2 4504 3 chr1A.!!$R1 4502
2 TraesCS1D01G080900 chr1B 101220956 101224850 3894 False 1363.0 2431 87.765 301 4498 3 chr1B.!!$F1 4197

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.037326 TTTCTCCAATGACGAGCGCT 60.037 50.0 11.27 11.27 0.00 5.92 F
177 178 0.390340 ATGACGAGCGCTCAACATGT 60.390 50.0 34.69 24.16 0.00 3.21 F
1041 1067 0.469331 TCCTCCTGGTGTTGTCGTCT 60.469 55.0 0.00 0.00 34.23 4.18 F
2479 2515 0.182775 AGTCAACACCAGGGAACACC 59.817 55.0 0.00 0.00 40.67 4.16 F
3262 3305 0.037447 GCCTCAAGAAGAAGTGCCCT 59.963 55.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 1651 0.319555 ACACACCGTGTTCCTGATCG 60.320 55.000 0.0 0.0 45.08 3.69 R
1648 1679 1.741706 AGCATGCTCAAATGGAAGACG 59.258 47.619 16.3 0.0 0.00 4.18 R
2593 2629 0.749818 CACGAGCAGAGAGGGCTAGA 60.750 60.000 0.0 0.0 42.78 2.43 R
3370 3413 0.861837 GCGCCATATCCGAGTCAAAG 59.138 55.000 0.0 0.0 0.00 2.77 R
4363 5061 1.358787 TGGACAATGGGGAAAGAGCAT 59.641 47.619 0.0 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.752187 TGATCTGCAATGCTAGTACATATATCA 58.248 33.333 6.82 3.52 0.00 2.15
41 42 9.591792 GATCTGCAATGCTAGTACATATATCAA 57.408 33.333 6.82 0.00 0.00 2.57
50 51 9.550811 TGCTAGTACATATATCAACGTAATTCG 57.449 33.333 0.00 0.00 46.00 3.34
107 108 2.828661 AAACCTAAAGGGGCAGATCC 57.171 50.000 0.20 0.00 40.27 3.36
108 109 1.681229 AACCTAAAGGGGCAGATCCA 58.319 50.000 0.20 0.00 40.27 3.41
109 110 1.681229 ACCTAAAGGGGCAGATCCAA 58.319 50.000 0.20 0.00 40.27 3.53
110 111 1.285078 ACCTAAAGGGGCAGATCCAAC 59.715 52.381 0.20 0.00 40.27 3.77
111 112 1.284785 CCTAAAGGGGCAGATCCAACA 59.715 52.381 0.00 0.00 36.21 3.33
112 113 2.291540 CCTAAAGGGGCAGATCCAACAA 60.292 50.000 0.00 0.00 36.21 2.83
113 114 2.397044 AAAGGGGCAGATCCAACAAA 57.603 45.000 0.00 0.00 36.21 2.83
114 115 1.632589 AAGGGGCAGATCCAACAAAC 58.367 50.000 0.00 0.00 36.21 2.93
115 116 0.251787 AGGGGCAGATCCAACAAACC 60.252 55.000 0.00 0.00 36.21 3.27
116 117 0.251787 GGGGCAGATCCAACAAACCT 60.252 55.000 0.00 0.00 36.21 3.50
117 118 1.632589 GGGCAGATCCAACAAACCTT 58.367 50.000 0.00 0.00 36.21 3.50
118 119 1.273327 GGGCAGATCCAACAAACCTTG 59.727 52.381 0.00 0.00 36.21 3.61
119 120 1.273327 GGCAGATCCAACAAACCTTGG 59.727 52.381 0.00 0.00 42.04 3.61
120 121 1.337167 GCAGATCCAACAAACCTTGGC 60.337 52.381 0.00 0.00 40.66 4.52
121 122 1.273327 CAGATCCAACAAACCTTGGCC 59.727 52.381 0.00 0.00 40.66 5.36
122 123 1.133199 AGATCCAACAAACCTTGGCCA 60.133 47.619 0.00 0.00 40.66 5.36
123 124 1.901833 GATCCAACAAACCTTGGCCAT 59.098 47.619 6.09 0.00 40.66 4.40
124 125 1.337118 TCCAACAAACCTTGGCCATC 58.663 50.000 6.09 0.00 40.66 3.51
125 126 1.047002 CCAACAAACCTTGGCCATCA 58.953 50.000 6.09 0.00 34.50 3.07
126 127 1.415659 CCAACAAACCTTGGCCATCAA 59.584 47.619 6.09 0.00 34.50 2.57
127 128 2.158842 CCAACAAACCTTGGCCATCAAA 60.159 45.455 6.09 0.00 34.50 2.69
128 129 2.871633 CAACAAACCTTGGCCATCAAAC 59.128 45.455 6.09 0.00 34.56 2.93
129 130 1.416030 ACAAACCTTGGCCATCAAACC 59.584 47.619 6.09 0.00 34.56 3.27
130 131 1.415659 CAAACCTTGGCCATCAAACCA 59.584 47.619 6.09 0.00 34.56 3.67
131 132 1.047801 AACCTTGGCCATCAAACCAC 58.952 50.000 6.09 0.00 35.10 4.16
132 133 0.105760 ACCTTGGCCATCAAACCACA 60.106 50.000 6.09 0.00 35.10 4.17
133 134 1.269012 CCTTGGCCATCAAACCACAT 58.731 50.000 6.09 0.00 35.10 3.21
134 135 1.205417 CCTTGGCCATCAAACCACATC 59.795 52.381 6.09 0.00 35.10 3.06
135 136 0.887247 TTGGCCATCAAACCACATCG 59.113 50.000 6.09 0.00 35.10 3.84
136 137 0.037447 TGGCCATCAAACCACATCGA 59.963 50.000 0.00 0.00 0.00 3.59
137 138 1.340893 TGGCCATCAAACCACATCGAT 60.341 47.619 0.00 0.00 0.00 3.59
138 139 1.334869 GGCCATCAAACCACATCGATC 59.665 52.381 0.00 0.00 0.00 3.69
139 140 1.334869 GCCATCAAACCACATCGATCC 59.665 52.381 0.00 0.00 0.00 3.36
140 141 2.642427 CCATCAAACCACATCGATCCA 58.358 47.619 0.00 0.00 0.00 3.41
141 142 3.016031 CCATCAAACCACATCGATCCAA 58.984 45.455 0.00 0.00 0.00 3.53
142 143 3.633525 CCATCAAACCACATCGATCCAAT 59.366 43.478 0.00 0.00 0.00 3.16
143 144 4.498513 CCATCAAACCACATCGATCCAATG 60.499 45.833 0.00 2.04 0.00 2.82
144 145 3.949132 TCAAACCACATCGATCCAATGA 58.051 40.909 9.18 0.00 0.00 2.57
145 146 3.689161 TCAAACCACATCGATCCAATGAC 59.311 43.478 9.18 0.00 0.00 3.06
146 147 2.332063 ACCACATCGATCCAATGACC 57.668 50.000 9.18 0.00 0.00 4.02
147 148 1.839994 ACCACATCGATCCAATGACCT 59.160 47.619 9.18 0.00 0.00 3.85
148 149 3.038280 ACCACATCGATCCAATGACCTA 58.962 45.455 9.18 0.00 0.00 3.08
149 150 3.648067 ACCACATCGATCCAATGACCTAT 59.352 43.478 9.18 0.00 0.00 2.57
150 151 4.103153 ACCACATCGATCCAATGACCTATT 59.897 41.667 9.18 0.00 0.00 1.73
151 152 5.065914 CCACATCGATCCAATGACCTATTT 58.934 41.667 9.18 0.00 0.00 1.40
152 153 5.532406 CCACATCGATCCAATGACCTATTTT 59.468 40.000 9.18 0.00 0.00 1.82
153 154 6.293626 CCACATCGATCCAATGACCTATTTTC 60.294 42.308 9.18 0.00 0.00 2.29
154 155 6.484643 CACATCGATCCAATGACCTATTTTCT 59.515 38.462 9.18 0.00 0.00 2.52
155 156 6.708054 ACATCGATCCAATGACCTATTTTCTC 59.292 38.462 9.18 0.00 0.00 2.87
156 157 5.611374 TCGATCCAATGACCTATTTTCTCC 58.389 41.667 0.00 0.00 0.00 3.71
157 158 5.130311 TCGATCCAATGACCTATTTTCTCCA 59.870 40.000 0.00 0.00 0.00 3.86
158 159 5.822519 CGATCCAATGACCTATTTTCTCCAA 59.177 40.000 0.00 0.00 0.00 3.53
159 160 6.488006 CGATCCAATGACCTATTTTCTCCAAT 59.512 38.462 0.00 0.00 0.00 3.16
160 161 7.521099 CGATCCAATGACCTATTTTCTCCAATG 60.521 40.741 0.00 0.00 0.00 2.82
161 162 6.730447 TCCAATGACCTATTTTCTCCAATGA 58.270 36.000 0.00 0.00 0.00 2.57
162 163 6.603201 TCCAATGACCTATTTTCTCCAATGAC 59.397 38.462 0.00 0.00 0.00 3.06
163 164 6.458751 CCAATGACCTATTTTCTCCAATGACG 60.459 42.308 0.00 0.00 0.00 4.35
164 165 5.414789 TGACCTATTTTCTCCAATGACGA 57.585 39.130 0.00 0.00 0.00 4.20
165 166 5.419542 TGACCTATTTTCTCCAATGACGAG 58.580 41.667 0.00 0.00 0.00 4.18
166 167 4.192317 ACCTATTTTCTCCAATGACGAGC 58.808 43.478 0.00 0.00 0.00 5.03
167 168 3.246226 CCTATTTTCTCCAATGACGAGCG 59.754 47.826 0.00 0.00 0.00 5.03
168 169 0.796312 TTTTCTCCAATGACGAGCGC 59.204 50.000 0.00 0.00 0.00 5.92
169 170 0.037326 TTTCTCCAATGACGAGCGCT 60.037 50.000 11.27 11.27 0.00 5.92
170 171 0.458543 TTCTCCAATGACGAGCGCTC 60.459 55.000 27.64 27.64 0.00 5.03
171 172 1.153765 CTCCAATGACGAGCGCTCA 60.154 57.895 34.69 18.87 0.00 4.26
172 173 0.737367 CTCCAATGACGAGCGCTCAA 60.737 55.000 34.69 20.88 0.00 3.02
173 174 1.014044 TCCAATGACGAGCGCTCAAC 61.014 55.000 34.69 26.38 0.00 3.18
174 175 1.291184 CCAATGACGAGCGCTCAACA 61.291 55.000 34.69 30.44 0.00 3.33
175 176 0.723414 CAATGACGAGCGCTCAACAT 59.277 50.000 34.69 31.11 0.00 2.71
176 177 0.723414 AATGACGAGCGCTCAACATG 59.277 50.000 34.69 21.14 0.00 3.21
177 178 0.390340 ATGACGAGCGCTCAACATGT 60.390 50.000 34.69 24.16 0.00 3.21
178 179 0.599991 TGACGAGCGCTCAACATGTT 60.600 50.000 34.69 4.92 0.00 2.71
179 180 0.512952 GACGAGCGCTCAACATGTTT 59.487 50.000 34.69 9.52 0.00 2.83
180 181 1.724623 GACGAGCGCTCAACATGTTTA 59.275 47.619 34.69 0.00 0.00 2.01
181 182 1.726791 ACGAGCGCTCAACATGTTTAG 59.273 47.619 34.69 17.61 0.00 1.85
182 183 1.527793 CGAGCGCTCAACATGTTTAGC 60.528 52.381 34.69 27.50 36.68 3.09
183 184 1.464608 GAGCGCTCAACATGTTTAGCA 59.535 47.619 32.86 9.93 39.16 3.49
184 185 2.086869 AGCGCTCAACATGTTTAGCAT 58.913 42.857 32.86 22.64 39.16 3.79
185 186 2.489329 AGCGCTCAACATGTTTAGCATT 59.511 40.909 32.86 21.98 39.16 3.56
186 187 2.848302 GCGCTCAACATGTTTAGCATTC 59.152 45.455 32.86 21.63 39.16 2.67
187 188 3.670359 GCGCTCAACATGTTTAGCATTCA 60.670 43.478 32.86 1.08 39.16 2.57
188 189 4.475028 CGCTCAACATGTTTAGCATTCAA 58.525 39.130 32.86 4.19 39.16 2.69
189 190 5.097529 CGCTCAACATGTTTAGCATTCAAT 58.902 37.500 32.86 0.00 39.16 2.57
190 191 5.574055 CGCTCAACATGTTTAGCATTCAATT 59.426 36.000 32.86 0.00 39.16 2.32
191 192 6.746822 CGCTCAACATGTTTAGCATTCAATTA 59.253 34.615 32.86 0.00 39.16 1.40
192 193 7.273164 CGCTCAACATGTTTAGCATTCAATTAA 59.727 33.333 32.86 0.00 39.16 1.40
193 194 8.375465 GCTCAACATGTTTAGCATTCAATTAAC 58.625 33.333 30.66 5.24 39.07 2.01
194 195 9.630098 CTCAACATGTTTAGCATTCAATTAACT 57.370 29.630 8.77 0.00 35.19 2.24
218 219 9.909644 ACTATCATACCAAATATCAACGTCTAC 57.090 33.333 0.00 0.00 0.00 2.59
219 220 9.908152 CTATCATACCAAATATCAACGTCTACA 57.092 33.333 0.00 0.00 0.00 2.74
221 222 9.778741 ATCATACCAAATATCAACGTCTACATT 57.221 29.630 0.00 0.00 0.00 2.71
225 226 8.603242 ACCAAATATCAACGTCTACATTATCC 57.397 34.615 0.00 0.00 0.00 2.59
226 227 8.208224 ACCAAATATCAACGTCTACATTATCCA 58.792 33.333 0.00 0.00 0.00 3.41
227 228 8.495949 CCAAATATCAACGTCTACATTATCCAC 58.504 37.037 0.00 0.00 0.00 4.02
228 229 7.869016 AATATCAACGTCTACATTATCCACG 57.131 36.000 0.00 0.00 36.54 4.94
229 230 4.707030 TCAACGTCTACATTATCCACGT 57.293 40.909 0.00 0.00 45.23 4.49
230 231 5.816449 TCAACGTCTACATTATCCACGTA 57.184 39.130 0.00 0.00 42.63 3.57
231 232 6.193514 TCAACGTCTACATTATCCACGTAA 57.806 37.500 0.00 0.00 42.63 3.18
232 233 6.798482 TCAACGTCTACATTATCCACGTAAT 58.202 36.000 0.00 0.00 42.63 1.89
233 234 7.259882 TCAACGTCTACATTATCCACGTAATT 58.740 34.615 0.00 0.00 42.63 1.40
234 235 8.404765 TCAACGTCTACATTATCCACGTAATTA 58.595 33.333 0.00 0.00 42.63 1.40
235 236 9.022915 CAACGTCTACATTATCCACGTAATTAA 57.977 33.333 0.00 0.00 42.63 1.40
236 237 9.754382 AACGTCTACATTATCCACGTAATTAAT 57.246 29.630 0.00 0.00 42.63 1.40
237 238 9.188588 ACGTCTACATTATCCACGTAATTAATG 57.811 33.333 16.09 16.09 41.69 1.90
238 239 9.401873 CGTCTACATTATCCACGTAATTAATGA 57.598 33.333 21.06 10.29 0.00 2.57
249 250 9.607988 TCCACGTAATTAATGAGTAATTGATGT 57.392 29.630 8.02 1.76 41.55 3.06
250 251 9.864034 CCACGTAATTAATGAGTAATTGATGTC 57.136 33.333 8.02 0.00 41.55 3.06
251 252 9.864034 CACGTAATTAATGAGTAATTGATGTCC 57.136 33.333 8.02 0.00 41.55 4.02
252 253 9.832445 ACGTAATTAATGAGTAATTGATGTCCT 57.168 29.630 8.02 0.00 41.55 3.85
268 269 9.645059 ATTGATGTCCTATCTAATATGAACGTG 57.355 33.333 0.00 0.00 0.00 4.49
269 270 7.090808 TGATGTCCTATCTAATATGAACGTGC 58.909 38.462 0.00 0.00 0.00 5.34
270 271 5.779922 TGTCCTATCTAATATGAACGTGCC 58.220 41.667 0.00 0.00 0.00 5.01
271 272 5.303333 TGTCCTATCTAATATGAACGTGCCA 59.697 40.000 0.00 0.00 0.00 4.92
272 273 6.014584 TGTCCTATCTAATATGAACGTGCCAT 60.015 38.462 8.48 8.48 0.00 4.40
273 274 6.874134 GTCCTATCTAATATGAACGTGCCATT 59.126 38.462 8.69 2.92 0.00 3.16
274 275 8.033038 GTCCTATCTAATATGAACGTGCCATTA 58.967 37.037 8.69 3.85 0.00 1.90
275 276 8.590204 TCCTATCTAATATGAACGTGCCATTAA 58.410 33.333 8.69 0.00 0.00 1.40
276 277 9.383519 CCTATCTAATATGAACGTGCCATTAAT 57.616 33.333 8.69 4.48 0.00 1.40
280 281 9.944663 TCTAATATGAACGTGCCATTAATTTTC 57.055 29.630 8.69 0.00 0.00 2.29
281 282 9.950680 CTAATATGAACGTGCCATTAATTTTCT 57.049 29.630 8.69 0.00 0.00 2.52
282 283 8.856490 AATATGAACGTGCCATTAATTTTCTC 57.144 30.769 8.69 0.00 0.00 2.87
283 284 5.957842 TGAACGTGCCATTAATTTTCTCT 57.042 34.783 0.00 0.00 0.00 3.10
284 285 5.938322 TGAACGTGCCATTAATTTTCTCTC 58.062 37.500 0.00 0.00 0.00 3.20
285 286 5.705441 TGAACGTGCCATTAATTTTCTCTCT 59.295 36.000 0.00 0.00 0.00 3.10
286 287 6.876789 TGAACGTGCCATTAATTTTCTCTCTA 59.123 34.615 0.00 0.00 0.00 2.43
287 288 7.389330 TGAACGTGCCATTAATTTTCTCTCTAA 59.611 33.333 0.00 0.00 0.00 2.10
288 289 7.865706 ACGTGCCATTAATTTTCTCTCTAAT 57.134 32.000 0.00 0.00 0.00 1.73
289 290 8.958119 ACGTGCCATTAATTTTCTCTCTAATA 57.042 30.769 0.00 0.00 0.00 0.98
290 291 9.561069 ACGTGCCATTAATTTTCTCTCTAATAT 57.439 29.630 0.00 0.00 0.00 1.28
301 302 8.744008 TTTTCTCTCTAATATATGCAGTACGC 57.256 34.615 0.00 3.22 42.89 4.42
315 316 3.550678 GCAGTACGCATTTACTAGTGTCC 59.449 47.826 5.39 0.00 41.79 4.02
317 318 2.288961 ACGCATTTACTAGTGTCCGG 57.711 50.000 5.39 0.00 0.00 5.14
344 345 1.301009 GCTATAGCTCCCGGTGCAC 60.301 63.158 17.75 8.80 38.21 4.57
417 434 4.153835 GGCTCATCAAGAAAACAGTCTCTG 59.846 45.833 0.00 0.00 37.52 3.35
418 435 4.993584 GCTCATCAAGAAAACAGTCTCTGA 59.006 41.667 3.70 0.00 35.18 3.27
422 439 5.006153 TCAAGAAAACAGTCTCTGACGAA 57.994 39.130 3.70 0.00 37.67 3.85
423 440 4.804139 TCAAGAAAACAGTCTCTGACGAAC 59.196 41.667 3.70 0.00 37.67 3.95
513 535 4.412199 TGTTCCTAAACCTCCTATCATGGG 59.588 45.833 0.00 0.00 34.28 4.00
546 568 0.834687 AGAAACCCCTGCAGTACGGA 60.835 55.000 13.81 0.00 0.00 4.69
593 615 4.263572 CACCAACCGGCCAGGACA 62.264 66.667 18.74 0.00 45.00 4.02
648 670 2.285827 AGTAGCAGTCGATCAGTTGC 57.714 50.000 0.00 4.62 36.83 4.17
1035 1061 2.419297 GCTGATACTCCTCCTGGTGTTG 60.419 54.545 0.00 0.00 40.21 3.33
1041 1067 0.469331 TCCTCCTGGTGTTGTCGTCT 60.469 55.000 0.00 0.00 34.23 4.18
1146 1172 2.338620 CGAGTCGTCACCAAGGCA 59.661 61.111 3.82 0.00 0.00 4.75
1161 1187 0.998145 AGGCATTCAAGAAGGAGCCT 59.002 50.000 15.93 15.93 46.89 4.58
1185 1211 2.796193 CCCTGGCGACATCATCCGA 61.796 63.158 0.00 0.00 41.51 4.55
1212 1238 2.551270 CACGACTGCTTTGTCCGC 59.449 61.111 0.00 0.00 33.70 5.54
1243 1269 5.388890 CGCTCACTGATGTTCACTAAGTTTC 60.389 44.000 0.00 0.00 0.00 2.78
1347 1373 2.871096 TATCTGTGCCGTCCCTTTTT 57.129 45.000 0.00 0.00 0.00 1.94
1349 1375 2.871096 TCTGTGCCGTCCCTTTTTAT 57.129 45.000 0.00 0.00 0.00 1.40
1486 1512 4.584325 TGATTCCTTGACCTGAAAAGTTGG 59.416 41.667 0.00 0.00 0.00 3.77
1487 1513 3.662759 TCCTTGACCTGAAAAGTTGGT 57.337 42.857 0.00 0.00 36.70 3.67
1488 1514 4.781775 TCCTTGACCTGAAAAGTTGGTA 57.218 40.909 0.00 0.00 33.74 3.25
1489 1515 5.319043 TCCTTGACCTGAAAAGTTGGTAT 57.681 39.130 0.00 0.00 33.74 2.73
1490 1516 5.701224 TCCTTGACCTGAAAAGTTGGTATT 58.299 37.500 0.00 0.00 33.74 1.89
1491 1517 6.133356 TCCTTGACCTGAAAAGTTGGTATTT 58.867 36.000 0.00 0.00 33.74 1.40
1492 1518 6.040391 TCCTTGACCTGAAAAGTTGGTATTTG 59.960 38.462 0.00 0.00 33.74 2.32
1493 1519 6.183360 CCTTGACCTGAAAAGTTGGTATTTGT 60.183 38.462 0.00 0.00 33.74 2.83
1494 1520 6.783708 TGACCTGAAAAGTTGGTATTTGTT 57.216 33.333 0.00 0.00 33.74 2.83
1495 1521 6.568869 TGACCTGAAAAGTTGGTATTTGTTG 58.431 36.000 0.00 0.00 33.74 3.33
1496 1522 6.378564 TGACCTGAAAAGTTGGTATTTGTTGA 59.621 34.615 0.00 0.00 33.74 3.18
1497 1523 6.569780 ACCTGAAAAGTTGGTATTTGTTGAC 58.430 36.000 0.00 0.00 31.50 3.18
1498 1524 5.983118 CCTGAAAAGTTGGTATTTGTTGACC 59.017 40.000 0.00 0.00 36.17 4.02
1499 1525 6.183360 CCTGAAAAGTTGGTATTTGTTGACCT 60.183 38.462 0.00 0.00 36.62 3.85
1500 1526 7.013846 CCTGAAAAGTTGGTATTTGTTGACCTA 59.986 37.037 0.00 0.00 36.62 3.08
1501 1527 7.936584 TGAAAAGTTGGTATTTGTTGACCTAG 58.063 34.615 0.00 0.00 36.62 3.02
1502 1528 7.776030 TGAAAAGTTGGTATTTGTTGACCTAGA 59.224 33.333 0.00 0.00 36.62 2.43
1503 1529 8.706322 AAAAGTTGGTATTTGTTGACCTAGAT 57.294 30.769 0.00 0.00 36.62 1.98
1504 1530 7.923414 AAGTTGGTATTTGTTGACCTAGATC 57.077 36.000 0.00 0.00 36.62 2.75
1505 1531 6.415573 AGTTGGTATTTGTTGACCTAGATCC 58.584 40.000 0.00 0.00 36.62 3.36
1506 1532 6.012858 AGTTGGTATTTGTTGACCTAGATCCA 60.013 38.462 0.00 0.00 36.62 3.41
1507 1533 6.575244 TGGTATTTGTTGACCTAGATCCAT 57.425 37.500 0.00 0.00 36.62 3.41
1508 1534 6.356556 TGGTATTTGTTGACCTAGATCCATG 58.643 40.000 0.00 0.00 36.62 3.66
1509 1535 6.069673 TGGTATTTGTTGACCTAGATCCATGT 60.070 38.462 0.00 0.00 36.62 3.21
1529 1555 7.655328 TCCATGTTATTTTGTTTGCGAGAAATT 59.345 29.630 0.00 0.00 0.00 1.82
1571 1599 3.677121 GCACATGTATCTCGAGGCATAAG 59.323 47.826 13.56 10.89 0.00 1.73
1573 1601 5.292765 CACATGTATCTCGAGGCATAAGTT 58.707 41.667 13.56 0.00 0.00 2.66
1574 1602 5.755375 CACATGTATCTCGAGGCATAAGTTT 59.245 40.000 13.56 0.00 0.00 2.66
1648 1679 4.035909 AGGAACACGGTGTGTAATTTGAAC 59.964 41.667 15.53 0.00 46.79 3.18
1656 1687 4.273969 GGTGTGTAATTTGAACGTCTTCCA 59.726 41.667 0.00 0.00 0.00 3.53
1686 1717 2.029623 GCTAGTCATGGGTCGGTCTTA 58.970 52.381 0.00 0.00 0.00 2.10
1702 1734 5.588648 TCGGTCTTATTTTTCCACCATCATC 59.411 40.000 0.00 0.00 0.00 2.92
1730 1762 3.514706 TGCCACAAATATTTGCACCATCT 59.485 39.130 24.82 4.01 41.79 2.90
1766 1798 4.702612 TGGTCAAGCTTTCAAACAGTACAA 59.297 37.500 0.00 0.00 0.00 2.41
1778 1810 7.504924 TCAAACAGTACAAAGACTAATTGGG 57.495 36.000 0.00 0.00 30.67 4.12
1921 1953 2.594592 AAGTGCGGTGCCTCCAAC 60.595 61.111 0.00 0.00 35.57 3.77
1934 1966 1.885887 CCTCCAACGGCAAATTCTGAA 59.114 47.619 0.00 0.00 0.00 3.02
2023 2056 6.381465 GCTTCTTGTTAAGCTGTTTATTGC 57.619 37.500 1.45 0.00 46.74 3.56
2030 2063 5.988561 TGTTAAGCTGTTTATTGCCTTTTGG 59.011 36.000 0.00 0.00 44.18 3.28
2041 2074 3.033659 TGCCTTTTGGGGTTAACTTGA 57.966 42.857 5.42 0.00 40.82 3.02
2043 2076 2.696187 GCCTTTTGGGGTTAACTTGACA 59.304 45.455 5.42 0.00 40.82 3.58
2045 2078 4.799255 GCCTTTTGGGGTTAACTTGACATG 60.799 45.833 5.42 0.00 40.82 3.21
2055 2088 9.841295 GGGGTTAACTTGACATGTATATTCTAA 57.159 33.333 5.42 0.00 0.00 2.10
2073 2106 6.671614 TTCTAAGTTTTGTCTCGCAGAAAA 57.328 33.333 0.00 0.00 34.09 2.29
2078 2111 9.267096 CTAAGTTTTGTCTCGCAGAAAAATATC 57.733 33.333 3.36 0.16 31.94 1.63
2083 2116 9.554724 TTTTGTCTCGCAGAAAAATATCAATAC 57.445 29.630 3.36 0.00 31.94 1.89
2137 2170 8.129840 TGTAATAAACAAGTACGCAAAACACAT 58.870 29.630 0.00 0.00 34.29 3.21
2143 2176 6.140110 ACAAGTACGCAAAACACATAATGAC 58.860 36.000 0.00 0.00 0.00 3.06
2152 2185 7.130917 GCAAAACACATAATGACATGCAAAAA 58.869 30.769 0.00 0.00 35.20 1.94
2155 2188 8.436046 AAACACATAATGACATGCAAAAAGTT 57.564 26.923 0.00 0.00 0.00 2.66
2179 2212 5.156355 AGTTGCACTGAAAATGAAATAGCG 58.844 37.500 0.00 0.00 0.00 4.26
2217 2250 5.229423 TGTGCAACCTTGATTAAGAAATGC 58.771 37.500 11.99 11.99 37.22 3.56
2245 2278 6.461640 ACAATTAGCTTGGACGTAAACTAGT 58.538 36.000 0.00 0.00 39.30 2.57
2410 2446 6.199531 TGTGTGCAAGTACTTAACTTTACTCG 59.800 38.462 8.04 0.00 46.61 4.18
2479 2515 0.182775 AGTCAACACCAGGGAACACC 59.817 55.000 0.00 0.00 40.67 4.16
2527 2563 1.533625 CCAGCTTGGATGGTTTCGAA 58.466 50.000 0.00 0.00 40.96 3.71
2593 2629 0.670546 CCGTCTCTTGTGCCGACATT 60.671 55.000 0.00 0.00 30.13 2.71
2605 2641 1.698506 CCGACATTCTAGCCCTCTCT 58.301 55.000 0.00 0.00 0.00 3.10
2653 2689 2.522060 GCTCGACTATGCCATTCCG 58.478 57.895 0.00 0.00 0.00 4.30
2659 2695 1.335132 ACTATGCCATTCCGACGGGT 61.335 55.000 15.25 0.00 33.83 5.28
2742 2778 2.037641 TCCACCATGATCAGCTTATCGG 59.962 50.000 0.09 2.42 0.00 4.18
2766 2802 2.616842 ACTTCACTGCAAAAGGTAACGG 59.383 45.455 7.75 0.00 46.39 4.44
2767 2803 1.600023 TCACTGCAAAAGGTAACGGG 58.400 50.000 0.00 0.00 46.39 5.28
2768 2804 1.141254 TCACTGCAAAAGGTAACGGGA 59.859 47.619 0.00 0.00 46.39 5.14
2791 2827 7.600375 GGGAACATCAGTACATACAGACATATG 59.400 40.741 0.00 0.00 38.34 1.78
2838 2875 9.143631 ACTTTACGCGTACATACTATTTCTTTT 57.856 29.630 20.44 0.00 0.00 2.27
2933 2970 6.825213 ACACAATTGCATGACACTACATCTAT 59.175 34.615 5.05 0.00 0.00 1.98
3042 3084 7.093640 ACCGTGAAGACCTTGTAATATCTAACA 60.094 37.037 0.00 0.00 0.00 2.41
3075 3117 5.353111 TGTGACACTGAGAAAAATACGTGA 58.647 37.500 7.20 0.00 0.00 4.35
3077 3119 4.447724 TGACACTGAGAAAAATACGTGAGC 59.552 41.667 0.00 0.00 0.00 4.26
3078 3120 3.746492 ACACTGAGAAAAATACGTGAGCC 59.254 43.478 0.00 0.00 0.00 4.70
3079 3121 3.997021 CACTGAGAAAAATACGTGAGCCT 59.003 43.478 0.00 0.00 0.00 4.58
3080 3122 4.452455 CACTGAGAAAAATACGTGAGCCTT 59.548 41.667 0.00 0.00 0.00 4.35
3081 3123 5.637810 CACTGAGAAAAATACGTGAGCCTTA 59.362 40.000 0.00 0.00 0.00 2.69
3127 3170 0.470833 AGGAGCTGGTGACACTGTCT 60.471 55.000 10.54 0.00 35.60 3.41
3160 3203 2.740055 GGCACCTCACACTGCTCG 60.740 66.667 0.00 0.00 33.63 5.03
3199 3242 2.056094 ACAAGTACTACAACGACGGC 57.944 50.000 0.00 0.00 0.00 5.68
3262 3305 0.037447 GCCTCAAGAAGAAGTGCCCT 59.963 55.000 0.00 0.00 0.00 5.19
3382 3425 1.299976 GGTGGCCTTTGACTCGGAT 59.700 57.895 3.32 0.00 0.00 4.18
3587 3647 4.816392 TGCGTTTGTCTCTGTATGTATGT 58.184 39.130 0.00 0.00 0.00 2.29
3588 3648 4.625311 TGCGTTTGTCTCTGTATGTATGTG 59.375 41.667 0.00 0.00 0.00 3.21
3589 3649 4.492570 GCGTTTGTCTCTGTATGTATGTGC 60.493 45.833 0.00 0.00 0.00 4.57
3590 3650 4.864806 CGTTTGTCTCTGTATGTATGTGCT 59.135 41.667 0.00 0.00 0.00 4.40
3594 3654 6.036577 TGTCTCTGTATGTATGTGCTTTGA 57.963 37.500 0.00 0.00 0.00 2.69
3602 3662 7.537715 TGTATGTATGTGCTTTGAGGAAATTG 58.462 34.615 0.00 0.00 0.00 2.32
3611 3671 7.126398 GTGCTTTGAGGAAATTGACGATATAC 58.874 38.462 0.00 0.00 0.00 1.47
3671 3735 9.653516 TTTTATATGGTGGTGTGAAATATGGAT 57.346 29.630 0.00 0.00 0.00 3.41
3705 3769 6.092670 CCAAGAATGTGTATCACTCGATTTGT 59.907 38.462 1.72 0.00 35.11 2.83
3718 3782 4.272504 ACTCGATTTGTGTTGTGAATTCGT 59.727 37.500 0.04 0.00 0.00 3.85
3728 3792 5.227184 GTGTTGTGAATTCGTCAAGAAACAC 59.773 40.000 13.60 14.03 43.14 3.32
3741 3808 7.173735 TCGTCAAGAAACACTCATGTACTAGTA 59.826 37.037 0.00 0.00 38.45 1.82
3840 3907 7.393234 TCGATGAAATGGTTCAGATTTTAGGTT 59.607 33.333 0.00 0.00 46.75 3.50
3864 3931 9.092876 GTTTTTGGATGTTTTACTGAATTGTGA 57.907 29.630 0.00 0.00 0.00 3.58
3907 3974 1.788308 CACAATCGCAACCAAAAGCAG 59.212 47.619 0.00 0.00 0.00 4.24
4009 4076 5.379757 CAAATGATGCTTACGAATTTGCC 57.620 39.130 0.00 0.00 33.08 4.52
4048 4120 6.569179 TTCAACTGAAACCCTATTGCTTAC 57.431 37.500 0.00 0.00 0.00 2.34
4050 4122 6.245408 TCAACTGAAACCCTATTGCTTACAT 58.755 36.000 0.00 0.00 0.00 2.29
4051 4123 6.150976 TCAACTGAAACCCTATTGCTTACATG 59.849 38.462 0.00 0.00 0.00 3.21
4052 4124 5.815581 ACTGAAACCCTATTGCTTACATGA 58.184 37.500 0.00 0.00 0.00 3.07
4103 4799 8.324191 TCCATCTTAACCACTTTCAGATAGAT 57.676 34.615 0.00 0.00 0.00 1.98
4119 4815 2.045438 ATCAAATCGTGCCCGCCA 60.045 55.556 0.00 0.00 0.00 5.69
4255 4951 3.902881 ACAACAGGCAAACAATTCCAA 57.097 38.095 0.00 0.00 0.00 3.53
4266 4962 3.904136 ACAATTCCAACAAAGCTCTCG 57.096 42.857 0.00 0.00 0.00 4.04
4339 5037 5.363562 ACTCCAGAAATGATGCACTCATA 57.636 39.130 10.69 0.00 44.03 2.15
4363 5061 0.038251 CCACTCTGCTTGCGACACTA 60.038 55.000 0.00 0.00 0.00 2.74
4478 5178 9.516314 GTAGTTTTAGCTAAATATTTGGGCTTG 57.484 33.333 24.81 7.07 34.35 4.01
4486 5186 3.715628 ATATTTGGGCTTGCGATTGTC 57.284 42.857 0.00 0.00 0.00 3.18
4504 5204 6.308041 CGATTGTCTTAAACATCTTCTCGACA 59.692 38.462 0.00 0.00 37.82 4.35
4505 5205 7.148804 CGATTGTCTTAAACATCTTCTCGACAA 60.149 37.037 0.00 0.00 42.19 3.18
4506 5206 6.764877 TGTCTTAAACATCTTCTCGACAAC 57.235 37.500 0.00 0.00 31.20 3.32
4507 5207 6.277605 TGTCTTAAACATCTTCTCGACAACA 58.722 36.000 0.00 0.00 31.20 3.33
4508 5208 6.759356 TGTCTTAAACATCTTCTCGACAACAA 59.241 34.615 0.00 0.00 31.20 2.83
4509 5209 7.064064 GTCTTAAACATCTTCTCGACAACAAC 58.936 38.462 0.00 0.00 0.00 3.32
4510 5210 6.984474 TCTTAAACATCTTCTCGACAACAACT 59.016 34.615 0.00 0.00 0.00 3.16
4511 5211 7.494625 TCTTAAACATCTTCTCGACAACAACTT 59.505 33.333 0.00 0.00 0.00 2.66
4512 5212 5.659048 AACATCTTCTCGACAACAACTTC 57.341 39.130 0.00 0.00 0.00 3.01
4513 5213 4.950050 ACATCTTCTCGACAACAACTTCT 58.050 39.130 0.00 0.00 0.00 2.85
4514 5214 5.360591 ACATCTTCTCGACAACAACTTCTT 58.639 37.500 0.00 0.00 0.00 2.52
4515 5215 5.235186 ACATCTTCTCGACAACAACTTCTTG 59.765 40.000 0.00 0.00 0.00 3.02
4516 5216 4.119862 TCTTCTCGACAACAACTTCTTGG 58.880 43.478 0.00 0.00 0.00 3.61
4517 5217 3.812156 TCTCGACAACAACTTCTTGGA 57.188 42.857 0.00 0.00 0.00 3.53
4518 5218 4.131649 TCTCGACAACAACTTCTTGGAA 57.868 40.909 0.00 0.00 0.00 3.53
4519 5219 4.119862 TCTCGACAACAACTTCTTGGAAG 58.880 43.478 5.83 5.83 0.00 3.46
4520 5220 3.202906 TCGACAACAACTTCTTGGAAGG 58.797 45.455 11.26 0.00 0.00 3.46
4521 5221 3.118555 TCGACAACAACTTCTTGGAAGGA 60.119 43.478 11.26 0.00 0.00 3.36
4522 5222 3.248602 CGACAACAACTTCTTGGAAGGAG 59.751 47.826 11.26 0.00 37.67 3.69
4523 5223 4.451900 GACAACAACTTCTTGGAAGGAGA 58.548 43.478 11.26 0.00 35.11 3.71
4524 5224 4.855340 ACAACAACTTCTTGGAAGGAGAA 58.145 39.130 11.26 0.00 35.11 2.87
4535 5235 7.986085 TCTTGGAAGGAGAAGATTTTGTAAG 57.014 36.000 0.00 0.00 0.00 2.34
4536 5236 6.431234 TCTTGGAAGGAGAAGATTTTGTAAGC 59.569 38.462 0.00 0.00 0.00 3.09
4537 5237 5.630121 TGGAAGGAGAAGATTTTGTAAGCA 58.370 37.500 0.00 0.00 0.00 3.91
4538 5238 6.248433 TGGAAGGAGAAGATTTTGTAAGCAT 58.752 36.000 0.00 0.00 0.00 3.79
4539 5239 6.151648 TGGAAGGAGAAGATTTTGTAAGCATG 59.848 38.462 0.00 0.00 0.00 4.06
4540 5240 6.375455 GGAAGGAGAAGATTTTGTAAGCATGA 59.625 38.462 0.00 0.00 0.00 3.07
4541 5241 6.998968 AGGAGAAGATTTTGTAAGCATGAG 57.001 37.500 0.00 0.00 0.00 2.90
4542 5242 5.884792 AGGAGAAGATTTTGTAAGCATGAGG 59.115 40.000 0.00 0.00 0.00 3.86
4543 5243 5.649831 GGAGAAGATTTTGTAAGCATGAGGT 59.350 40.000 0.00 0.00 0.00 3.85
4544 5244 6.823689 GGAGAAGATTTTGTAAGCATGAGGTA 59.176 38.462 0.00 0.00 0.00 3.08
4545 5245 7.336931 GGAGAAGATTTTGTAAGCATGAGGTAA 59.663 37.037 0.00 0.00 0.00 2.85
4546 5246 8.635765 AGAAGATTTTGTAAGCATGAGGTAAA 57.364 30.769 0.00 0.00 0.00 2.01
4547 5247 9.077885 AGAAGATTTTGTAAGCATGAGGTAAAA 57.922 29.630 0.00 0.00 0.00 1.52
4548 5248 9.346725 GAAGATTTTGTAAGCATGAGGTAAAAG 57.653 33.333 0.00 0.00 0.00 2.27
4549 5249 7.830739 AGATTTTGTAAGCATGAGGTAAAAGG 58.169 34.615 0.00 0.00 0.00 3.11
4550 5250 6.969993 TTTTGTAAGCATGAGGTAAAAGGT 57.030 33.333 0.00 0.00 0.00 3.50
4551 5251 5.957842 TTGTAAGCATGAGGTAAAAGGTG 57.042 39.130 0.00 0.00 0.00 4.00
4552 5252 4.331968 TGTAAGCATGAGGTAAAAGGTGG 58.668 43.478 0.00 0.00 0.00 4.61
4553 5253 3.525800 AAGCATGAGGTAAAAGGTGGT 57.474 42.857 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.997323 GCATTGCAGATCAACTCTATAGTAAAT 58.003 33.333 3.15 0.00 37.53 1.40
4 5 6.172136 AGCATTGCAGATCAACTCTATAGT 57.828 37.500 11.91 0.00 37.53 2.12
9 10 4.484537 ACTAGCATTGCAGATCAACTCT 57.515 40.909 11.91 0.00 37.53 3.24
40 41 8.644318 AATGCTAGTTTATCTCGAATTACGTT 57.356 30.769 0.00 0.00 43.13 3.99
41 42 9.909644 ATAATGCTAGTTTATCTCGAATTACGT 57.090 29.630 0.00 0.00 43.13 3.57
86 87 3.181412 TGGATCTGCCCCTTTAGGTTTTT 60.181 43.478 0.00 0.00 34.97 1.94
87 88 2.381961 TGGATCTGCCCCTTTAGGTTTT 59.618 45.455 0.00 0.00 34.97 2.43
88 89 2.000048 TGGATCTGCCCCTTTAGGTTT 59.000 47.619 0.00 0.00 34.97 3.27
89 90 1.681229 TGGATCTGCCCCTTTAGGTT 58.319 50.000 0.00 0.00 34.97 3.50
90 91 1.285078 GTTGGATCTGCCCCTTTAGGT 59.715 52.381 0.00 0.00 34.97 3.08
91 92 1.284785 TGTTGGATCTGCCCCTTTAGG 59.715 52.381 0.00 0.00 34.97 2.69
92 93 2.806945 TGTTGGATCTGCCCCTTTAG 57.193 50.000 0.00 0.00 34.97 1.85
93 94 3.161866 GTTTGTTGGATCTGCCCCTTTA 58.838 45.455 0.00 0.00 34.97 1.85
94 95 1.970640 GTTTGTTGGATCTGCCCCTTT 59.029 47.619 0.00 0.00 34.97 3.11
95 96 1.632589 GTTTGTTGGATCTGCCCCTT 58.367 50.000 0.00 0.00 34.97 3.95
96 97 0.251787 GGTTTGTTGGATCTGCCCCT 60.252 55.000 0.00 0.00 34.97 4.79
97 98 0.251787 AGGTTTGTTGGATCTGCCCC 60.252 55.000 0.00 0.00 34.97 5.80
98 99 1.273327 CAAGGTTTGTTGGATCTGCCC 59.727 52.381 0.00 0.00 34.97 5.36
99 100 2.730550 CAAGGTTTGTTGGATCTGCC 57.269 50.000 0.00 0.00 37.10 4.85
107 108 2.871633 GTTTGATGGCCAAGGTTTGTTG 59.128 45.455 10.96 0.00 35.94 3.33
108 109 2.158827 GGTTTGATGGCCAAGGTTTGTT 60.159 45.455 10.96 0.00 35.94 2.83
109 110 1.416030 GGTTTGATGGCCAAGGTTTGT 59.584 47.619 10.96 0.00 35.94 2.83
110 111 1.415659 TGGTTTGATGGCCAAGGTTTG 59.584 47.619 10.96 0.00 35.94 2.93
111 112 1.416030 GTGGTTTGATGGCCAAGGTTT 59.584 47.619 10.96 0.00 36.41 3.27
112 113 1.047801 GTGGTTTGATGGCCAAGGTT 58.952 50.000 10.96 0.00 36.41 3.50
113 114 0.105760 TGTGGTTTGATGGCCAAGGT 60.106 50.000 10.96 0.00 36.41 3.50
114 115 1.205417 GATGTGGTTTGATGGCCAAGG 59.795 52.381 10.96 0.00 36.41 3.61
115 116 1.135315 CGATGTGGTTTGATGGCCAAG 60.135 52.381 10.96 0.00 36.41 3.61
116 117 0.887247 CGATGTGGTTTGATGGCCAA 59.113 50.000 10.96 0.00 36.41 4.52
117 118 0.037447 TCGATGTGGTTTGATGGCCA 59.963 50.000 8.56 8.56 0.00 5.36
118 119 1.334869 GATCGATGTGGTTTGATGGCC 59.665 52.381 0.54 0.00 0.00 5.36
119 120 1.334869 GGATCGATGTGGTTTGATGGC 59.665 52.381 0.54 0.00 0.00 4.40
120 121 2.642427 TGGATCGATGTGGTTTGATGG 58.358 47.619 0.54 0.00 0.00 3.51
121 122 4.336153 TCATTGGATCGATGTGGTTTGATG 59.664 41.667 0.54 0.00 0.00 3.07
122 123 4.336433 GTCATTGGATCGATGTGGTTTGAT 59.664 41.667 0.54 0.00 0.00 2.57
123 124 3.689161 GTCATTGGATCGATGTGGTTTGA 59.311 43.478 0.54 0.00 0.00 2.69
124 125 3.181497 GGTCATTGGATCGATGTGGTTTG 60.181 47.826 0.54 0.00 0.00 2.93
125 126 3.016736 GGTCATTGGATCGATGTGGTTT 58.983 45.455 0.54 0.00 0.00 3.27
126 127 2.239654 AGGTCATTGGATCGATGTGGTT 59.760 45.455 0.54 0.00 0.00 3.67
127 128 1.839994 AGGTCATTGGATCGATGTGGT 59.160 47.619 0.54 0.00 0.00 4.16
128 129 2.627515 AGGTCATTGGATCGATGTGG 57.372 50.000 0.54 0.00 0.00 4.17
129 130 6.484643 AGAAAATAGGTCATTGGATCGATGTG 59.515 38.462 0.54 0.00 0.00 3.21
130 131 6.595682 AGAAAATAGGTCATTGGATCGATGT 58.404 36.000 0.54 0.00 0.00 3.06
131 132 6.148480 GGAGAAAATAGGTCATTGGATCGATG 59.852 42.308 0.54 0.00 0.00 3.84
132 133 6.183361 TGGAGAAAATAGGTCATTGGATCGAT 60.183 38.462 0.00 0.00 0.00 3.59
133 134 5.130311 TGGAGAAAATAGGTCATTGGATCGA 59.870 40.000 0.00 0.00 0.00 3.59
134 135 5.368145 TGGAGAAAATAGGTCATTGGATCG 58.632 41.667 0.00 0.00 0.00 3.69
135 136 7.503566 TCATTGGAGAAAATAGGTCATTGGATC 59.496 37.037 0.00 0.00 0.00 3.36
136 137 7.286316 GTCATTGGAGAAAATAGGTCATTGGAT 59.714 37.037 0.00 0.00 0.00 3.41
137 138 6.603201 GTCATTGGAGAAAATAGGTCATTGGA 59.397 38.462 0.00 0.00 0.00 3.53
138 139 6.458751 CGTCATTGGAGAAAATAGGTCATTGG 60.459 42.308 0.00 0.00 0.00 3.16
139 140 6.316140 TCGTCATTGGAGAAAATAGGTCATTG 59.684 38.462 0.00 0.00 0.00 2.82
140 141 6.414732 TCGTCATTGGAGAAAATAGGTCATT 58.585 36.000 0.00 0.00 0.00 2.57
141 142 5.989477 TCGTCATTGGAGAAAATAGGTCAT 58.011 37.500 0.00 0.00 0.00 3.06
142 143 5.414789 TCGTCATTGGAGAAAATAGGTCA 57.585 39.130 0.00 0.00 0.00 4.02
143 144 4.271291 GCTCGTCATTGGAGAAAATAGGTC 59.729 45.833 0.00 0.00 33.27 3.85
144 145 4.192317 GCTCGTCATTGGAGAAAATAGGT 58.808 43.478 0.00 0.00 33.27 3.08
145 146 3.246226 CGCTCGTCATTGGAGAAAATAGG 59.754 47.826 0.00 0.00 33.27 2.57
146 147 3.302740 GCGCTCGTCATTGGAGAAAATAG 60.303 47.826 0.00 0.00 33.27 1.73
147 148 2.607635 GCGCTCGTCATTGGAGAAAATA 59.392 45.455 0.00 0.00 33.27 1.40
148 149 1.398390 GCGCTCGTCATTGGAGAAAAT 59.602 47.619 0.00 0.00 33.27 1.82
149 150 0.796312 GCGCTCGTCATTGGAGAAAA 59.204 50.000 0.00 0.00 33.27 2.29
150 151 0.037326 AGCGCTCGTCATTGGAGAAA 60.037 50.000 2.64 0.00 33.27 2.52
151 152 0.458543 GAGCGCTCGTCATTGGAGAA 60.459 55.000 23.61 0.00 33.27 2.87
152 153 1.139734 GAGCGCTCGTCATTGGAGA 59.860 57.895 23.61 0.00 33.27 3.71
153 154 0.737367 TTGAGCGCTCGTCATTGGAG 60.737 55.000 30.75 0.00 34.62 3.86
154 155 1.014044 GTTGAGCGCTCGTCATTGGA 61.014 55.000 30.75 9.36 0.00 3.53
155 156 1.291184 TGTTGAGCGCTCGTCATTGG 61.291 55.000 30.75 0.00 0.00 3.16
156 157 0.723414 ATGTTGAGCGCTCGTCATTG 59.277 50.000 30.75 0.00 0.00 2.82
157 158 0.723414 CATGTTGAGCGCTCGTCATT 59.277 50.000 30.63 19.53 0.00 2.57
158 159 0.390340 ACATGTTGAGCGCTCGTCAT 60.390 50.000 30.75 29.61 0.00 3.06
159 160 0.599991 AACATGTTGAGCGCTCGTCA 60.600 50.000 30.75 28.87 0.00 4.35
160 161 0.512952 AAACATGTTGAGCGCTCGTC 59.487 50.000 30.75 24.72 0.00 4.20
161 162 1.726791 CTAAACATGTTGAGCGCTCGT 59.273 47.619 30.75 19.64 0.00 4.18
162 163 1.527793 GCTAAACATGTTGAGCGCTCG 60.528 52.381 28.15 18.98 37.32 5.03
163 164 2.165282 GCTAAACATGTTGAGCGCTC 57.835 50.000 28.15 30.42 37.32 5.03
167 168 6.956299 AATTGAATGCTAAACATGTTGAGC 57.044 33.333 32.98 32.98 45.32 4.26
168 169 9.630098 AGTTAATTGAATGCTAAACATGTTGAG 57.370 29.630 17.57 17.57 39.60 3.02
192 193 9.909644 GTAGACGTTGATATTTGGTATGATAGT 57.090 33.333 0.00 0.00 0.00 2.12
193 194 9.908152 TGTAGACGTTGATATTTGGTATGATAG 57.092 33.333 0.00 0.00 0.00 2.08
195 196 9.778741 AATGTAGACGTTGATATTTGGTATGAT 57.221 29.630 0.00 0.00 0.00 2.45
199 200 9.701098 GGATAATGTAGACGTTGATATTTGGTA 57.299 33.333 0.00 0.00 0.00 3.25
200 201 8.208224 TGGATAATGTAGACGTTGATATTTGGT 58.792 33.333 0.00 0.00 0.00 3.67
201 202 8.495949 GTGGATAATGTAGACGTTGATATTTGG 58.504 37.037 0.00 0.00 0.00 3.28
202 203 8.214472 CGTGGATAATGTAGACGTTGATATTTG 58.786 37.037 0.00 0.00 0.00 2.32
203 204 7.924412 ACGTGGATAATGTAGACGTTGATATTT 59.076 33.333 0.00 0.00 40.16 1.40
204 205 7.431249 ACGTGGATAATGTAGACGTTGATATT 58.569 34.615 0.00 0.00 40.16 1.28
205 206 6.978338 ACGTGGATAATGTAGACGTTGATAT 58.022 36.000 0.00 0.00 40.16 1.63
206 207 6.381481 ACGTGGATAATGTAGACGTTGATA 57.619 37.500 0.00 0.00 40.16 2.15
207 208 5.258456 ACGTGGATAATGTAGACGTTGAT 57.742 39.130 0.00 0.00 40.16 2.57
208 209 4.707030 ACGTGGATAATGTAGACGTTGA 57.293 40.909 0.00 0.00 40.16 3.18
209 210 7.459394 AATTACGTGGATAATGTAGACGTTG 57.541 36.000 0.00 0.00 42.78 4.10
210 211 9.754382 ATTAATTACGTGGATAATGTAGACGTT 57.246 29.630 0.00 0.00 42.78 3.99
211 212 9.188588 CATTAATTACGTGGATAATGTAGACGT 57.811 33.333 15.31 0.00 44.79 4.34
212 213 9.401873 TCATTAATTACGTGGATAATGTAGACG 57.598 33.333 19.50 0.00 37.16 4.18
223 224 9.607988 ACATCAATTACTCATTAATTACGTGGA 57.392 29.630 0.00 0.00 38.17 4.02
224 225 9.864034 GACATCAATTACTCATTAATTACGTGG 57.136 33.333 0.00 0.00 38.17 4.94
225 226 9.864034 GGACATCAATTACTCATTAATTACGTG 57.136 33.333 0.00 0.00 38.17 4.49
226 227 9.832445 AGGACATCAATTACTCATTAATTACGT 57.168 29.630 0.00 0.00 38.17 3.57
242 243 9.645059 CACGTTCATATTAGATAGGACATCAAT 57.355 33.333 0.00 0.00 0.00 2.57
243 244 7.598869 GCACGTTCATATTAGATAGGACATCAA 59.401 37.037 0.00 0.00 0.00 2.57
244 245 7.090808 GCACGTTCATATTAGATAGGACATCA 58.909 38.462 0.00 0.00 0.00 3.07
245 246 6.531948 GGCACGTTCATATTAGATAGGACATC 59.468 42.308 0.00 0.00 0.00 3.06
246 247 6.014584 TGGCACGTTCATATTAGATAGGACAT 60.015 38.462 0.00 0.00 0.00 3.06
247 248 5.303333 TGGCACGTTCATATTAGATAGGACA 59.697 40.000 0.00 0.00 0.00 4.02
248 249 5.779922 TGGCACGTTCATATTAGATAGGAC 58.220 41.667 0.00 0.00 0.00 3.85
249 250 6.605471 ATGGCACGTTCATATTAGATAGGA 57.395 37.500 0.00 0.00 0.00 2.94
250 251 8.771920 TTAATGGCACGTTCATATTAGATAGG 57.228 34.615 0.00 0.00 0.00 2.57
254 255 9.944663 GAAAATTAATGGCACGTTCATATTAGA 57.055 29.630 0.00 0.00 0.00 2.10
255 256 9.950680 AGAAAATTAATGGCACGTTCATATTAG 57.049 29.630 0.00 0.00 0.00 1.73
256 257 9.944663 GAGAAAATTAATGGCACGTTCATATTA 57.055 29.630 0.00 0.00 0.00 0.98
257 258 8.686334 AGAGAAAATTAATGGCACGTTCATATT 58.314 29.630 0.00 0.00 0.00 1.28
258 259 8.225603 AGAGAAAATTAATGGCACGTTCATAT 57.774 30.769 0.00 0.00 0.00 1.78
259 260 7.552687 AGAGAGAAAATTAATGGCACGTTCATA 59.447 33.333 0.00 0.00 0.00 2.15
260 261 6.375455 AGAGAGAAAATTAATGGCACGTTCAT 59.625 34.615 0.00 0.00 0.00 2.57
261 262 5.705441 AGAGAGAAAATTAATGGCACGTTCA 59.295 36.000 0.00 0.00 0.00 3.18
262 263 6.183309 AGAGAGAAAATTAATGGCACGTTC 57.817 37.500 0.00 0.00 0.00 3.95
263 264 7.681939 TTAGAGAGAAAATTAATGGCACGTT 57.318 32.000 0.00 0.00 0.00 3.99
264 265 7.865706 ATTAGAGAGAAAATTAATGGCACGT 57.134 32.000 0.00 0.00 0.00 4.49
275 276 9.360093 GCGTACTGCATATATTAGAGAGAAAAT 57.640 33.333 5.07 0.00 45.45 1.82
276 277 8.744008 GCGTACTGCATATATTAGAGAGAAAA 57.256 34.615 5.07 0.00 45.45 2.29
293 294 3.550678 GGACACTAGTAAATGCGTACTGC 59.449 47.826 0.00 3.22 46.70 4.40
294 295 3.789756 CGGACACTAGTAAATGCGTACTG 59.210 47.826 0.00 0.00 35.85 2.74
295 296 3.181493 CCGGACACTAGTAAATGCGTACT 60.181 47.826 0.00 0.88 37.98 2.73
296 297 3.111098 CCGGACACTAGTAAATGCGTAC 58.889 50.000 0.00 0.00 0.00 3.67
297 298 3.016031 TCCGGACACTAGTAAATGCGTA 58.984 45.455 0.00 0.00 0.00 4.42
298 299 1.820519 TCCGGACACTAGTAAATGCGT 59.179 47.619 0.00 0.00 0.00 5.24
299 300 2.572191 TCCGGACACTAGTAAATGCG 57.428 50.000 0.00 1.33 0.00 4.73
300 301 3.621715 CCTTTCCGGACACTAGTAAATGC 59.378 47.826 1.83 0.00 33.16 3.56
301 302 5.080969 TCCTTTCCGGACACTAGTAAATG 57.919 43.478 1.83 0.00 36.69 2.32
302 303 5.021458 TCTCCTTTCCGGACACTAGTAAAT 58.979 41.667 1.83 0.00 36.69 1.40
303 304 4.410099 TCTCCTTTCCGGACACTAGTAAA 58.590 43.478 1.83 0.00 36.69 2.01
304 305 4.015084 CTCTCCTTTCCGGACACTAGTAA 58.985 47.826 1.83 0.00 36.69 2.24
305 306 3.618351 CTCTCCTTTCCGGACACTAGTA 58.382 50.000 1.83 0.00 36.69 1.82
306 307 2.448453 CTCTCCTTTCCGGACACTAGT 58.552 52.381 1.83 0.00 36.69 2.57
307 308 1.135333 GCTCTCCTTTCCGGACACTAG 59.865 57.143 1.83 0.00 36.69 2.57
308 309 1.183549 GCTCTCCTTTCCGGACACTA 58.816 55.000 1.83 0.00 36.69 2.74
309 310 0.543174 AGCTCTCCTTTCCGGACACT 60.543 55.000 1.83 0.00 36.69 3.55
310 311 1.183549 TAGCTCTCCTTTCCGGACAC 58.816 55.000 1.83 0.00 36.69 3.67
344 345 4.963276 TTCTTCTGGTTGGCATATTTCG 57.037 40.909 0.00 0.00 0.00 3.46
386 403 3.394674 TTCTTGATGAGCCACGTAACA 57.605 42.857 0.00 0.00 0.00 2.41
417 434 0.880278 TGCAGTGCTCAAGGTTCGTC 60.880 55.000 17.60 0.00 0.00 4.20
418 435 0.250467 ATGCAGTGCTCAAGGTTCGT 60.250 50.000 17.60 0.00 0.00 3.85
422 439 1.001974 TCGTAATGCAGTGCTCAAGGT 59.998 47.619 17.60 0.00 0.00 3.50
423 440 1.725641 TCGTAATGCAGTGCTCAAGG 58.274 50.000 17.60 7.05 0.00 3.61
492 514 3.394606 GCCCATGATAGGAGGTTTAGGAA 59.605 47.826 0.00 0.00 0.00 3.36
513 535 2.552031 GGTTTCTCATAGGGTCGAAGC 58.448 52.381 0.00 0.00 0.00 3.86
546 568 3.490249 GCCGTCCTAAGTTGCTTTTGTTT 60.490 43.478 0.00 0.00 0.00 2.83
648 670 3.001736 GCGCCTTGCTTTAGTCTAATCAG 59.998 47.826 0.00 0.00 41.73 2.90
730 752 4.471726 GACGACGACGCGGGACAT 62.472 66.667 12.47 0.00 43.96 3.06
855 878 0.945265 CCAAGCCACAAACGCCAATG 60.945 55.000 0.00 0.00 0.00 2.82
856 879 1.367102 CCAAGCCACAAACGCCAAT 59.633 52.632 0.00 0.00 0.00 3.16
899 922 3.136260 AGGAGGAATGAAGGAATGAGAGC 59.864 47.826 0.00 0.00 0.00 4.09
957 983 2.180204 CGAACCGCCCATGGTGATC 61.180 63.158 11.73 2.43 42.89 2.92
1035 1061 4.719369 ACCGCTGGCGAAGACGAC 62.719 66.667 16.79 0.00 41.59 4.34
1083 1109 0.974383 ACAACTCCCTGTAGAACCCG 59.026 55.000 0.00 0.00 0.00 5.28
1146 1172 0.700564 TGCCAGGCTCCTTCTTGAAT 59.299 50.000 14.15 0.00 0.00 2.57
1170 1196 1.037579 AGAGTCGGATGATGTCGCCA 61.038 55.000 0.00 0.00 0.00 5.69
1185 1211 2.622064 AGCAGTCGTGGAAAAAGAGT 57.378 45.000 0.00 0.00 0.00 3.24
1243 1269 2.981805 CCGTGCAAAACATCATCAACTG 59.018 45.455 0.00 0.00 0.00 3.16
1267 1293 8.203485 TCTCAGTGGCAAAAATCAAGTAAAAAT 58.797 29.630 0.00 0.00 0.00 1.82
1302 1328 3.054948 GGTGCACCTACACTGGGTTTATA 60.055 47.826 29.12 0.00 40.52 0.98
1347 1373 2.925253 AGCATCATGGATCTCCCCATA 58.075 47.619 0.00 0.00 44.69 2.74
1349 1375 2.263545 CTAGCATCATGGATCTCCCCA 58.736 52.381 0.00 0.00 41.05 4.96
1451 1477 9.123902 CAGGTCAAGGAATCATTATATCAACAA 57.876 33.333 0.00 0.00 0.00 2.83
1452 1478 8.493607 TCAGGTCAAGGAATCATTATATCAACA 58.506 33.333 0.00 0.00 0.00 3.33
1455 1481 9.919416 TTTTCAGGTCAAGGAATCATTATATCA 57.081 29.630 0.00 0.00 0.00 2.15
1469 1495 6.805713 ACAAATACCAACTTTTCAGGTCAAG 58.194 36.000 0.00 0.00 36.87 3.02
1486 1512 7.865706 AACATGGATCTAGGTCAACAAATAC 57.134 36.000 5.14 0.00 0.00 1.89
1488 1514 9.479549 AAATAACATGGATCTAGGTCAACAAAT 57.520 29.630 5.14 0.00 0.00 2.32
1489 1515 8.877864 AAATAACATGGATCTAGGTCAACAAA 57.122 30.769 5.14 0.00 0.00 2.83
1490 1516 8.739039 CAAAATAACATGGATCTAGGTCAACAA 58.261 33.333 5.14 0.00 0.00 2.83
1491 1517 7.888021 ACAAAATAACATGGATCTAGGTCAACA 59.112 33.333 5.14 0.00 0.00 3.33
1492 1518 8.281212 ACAAAATAACATGGATCTAGGTCAAC 57.719 34.615 5.14 0.00 0.00 3.18
1493 1519 8.877864 AACAAAATAACATGGATCTAGGTCAA 57.122 30.769 5.14 0.00 0.00 3.18
1494 1520 8.739039 CAAACAAAATAACATGGATCTAGGTCA 58.261 33.333 5.14 0.00 0.00 4.02
1495 1521 7.702348 GCAAACAAAATAACATGGATCTAGGTC 59.298 37.037 0.00 0.00 0.00 3.85
1496 1522 7.547227 GCAAACAAAATAACATGGATCTAGGT 58.453 34.615 0.00 0.00 0.00 3.08
1497 1523 6.692681 CGCAAACAAAATAACATGGATCTAGG 59.307 38.462 0.00 0.00 0.00 3.02
1498 1524 7.471721 TCGCAAACAAAATAACATGGATCTAG 58.528 34.615 0.00 0.00 0.00 2.43
1499 1525 7.335673 TCTCGCAAACAAAATAACATGGATCTA 59.664 33.333 0.00 0.00 0.00 1.98
1500 1526 6.150976 TCTCGCAAACAAAATAACATGGATCT 59.849 34.615 0.00 0.00 0.00 2.75
1501 1527 6.321717 TCTCGCAAACAAAATAACATGGATC 58.678 36.000 0.00 0.00 0.00 3.36
1502 1528 6.266168 TCTCGCAAACAAAATAACATGGAT 57.734 33.333 0.00 0.00 0.00 3.41
1503 1529 5.697473 TCTCGCAAACAAAATAACATGGA 57.303 34.783 0.00 0.00 0.00 3.41
1504 1530 6.761731 TTTCTCGCAAACAAAATAACATGG 57.238 33.333 0.00 0.00 0.00 3.66
1505 1531 8.486383 TCAATTTCTCGCAAACAAAATAACATG 58.514 29.630 0.00 0.00 0.00 3.21
1506 1532 8.586570 TCAATTTCTCGCAAACAAAATAACAT 57.413 26.923 0.00 0.00 0.00 2.71
1507 1533 7.993821 TCAATTTCTCGCAAACAAAATAACA 57.006 28.000 0.00 0.00 0.00 2.41
1508 1534 9.356929 CTTTCAATTTCTCGCAAACAAAATAAC 57.643 29.630 0.00 0.00 0.00 1.89
1509 1535 9.092876 ACTTTCAATTTCTCGCAAACAAAATAA 57.907 25.926 0.00 0.00 0.00 1.40
1546 1572 2.158914 TGCCTCGAGATACATGTGCATT 60.159 45.455 15.71 0.00 0.00 3.56
1548 1574 0.823460 TGCCTCGAGATACATGTGCA 59.177 50.000 15.71 9.39 0.00 4.57
1549 1575 2.160822 ATGCCTCGAGATACATGTGC 57.839 50.000 15.71 6.54 0.00 4.57
1550 1576 4.876125 ACTTATGCCTCGAGATACATGTG 58.124 43.478 15.71 12.80 0.00 3.21
1551 1577 5.537300 AACTTATGCCTCGAGATACATGT 57.463 39.130 15.71 2.69 0.00 3.21
1552 1578 7.063898 CCATAAACTTATGCCTCGAGATACATG 59.936 40.741 15.71 6.45 39.30 3.21
1553 1579 7.099764 CCATAAACTTATGCCTCGAGATACAT 58.900 38.462 15.71 16.11 39.30 2.29
1554 1580 6.455647 CCATAAACTTATGCCTCGAGATACA 58.544 40.000 15.71 9.63 39.30 2.29
1555 1581 5.869888 CCCATAAACTTATGCCTCGAGATAC 59.130 44.000 15.71 3.40 39.30 2.24
1561 1589 8.692710 TCTATATACCCATAAACTTATGCCTCG 58.307 37.037 4.24 0.00 39.30 4.63
1620 1651 0.319555 ACACACCGTGTTCCTGATCG 60.320 55.000 0.00 0.00 45.08 3.69
1632 1663 4.451557 GAAGACGTTCAAATTACACACCG 58.548 43.478 0.00 0.00 32.36 4.94
1648 1679 1.741706 AGCATGCTCAAATGGAAGACG 59.258 47.619 16.30 0.00 0.00 4.18
1686 1717 5.702209 GCACTTTTGATGATGGTGGAAAAAT 59.298 36.000 0.00 0.00 0.00 1.82
1702 1734 5.670149 TGCAAATATTTGTGGCACTTTTG 57.330 34.783 25.15 18.44 40.24 2.44
1730 1762 9.290988 TGAAAGCTTGACCAAAGTATAAATGTA 57.709 29.630 0.00 0.00 38.25 2.29
1766 1798 5.610982 TGCCCAGTATATCCCAATTAGTCTT 59.389 40.000 0.00 0.00 0.00 3.01
1831 1863 9.750125 GGGAAGCTATAAAAATTACAAATCCAG 57.250 33.333 0.00 0.00 0.00 3.86
1900 1932 2.109126 GGAGGCACCGCACTTCATC 61.109 63.158 0.00 0.00 0.00 2.92
1921 1953 4.396166 AGTGGTAGATTTCAGAATTTGCCG 59.604 41.667 0.00 0.00 35.66 5.69
1924 1956 7.086376 CCACAAGTGGTAGATTTCAGAATTTG 58.914 38.462 11.08 0.00 45.53 2.32
1992 2025 2.489722 GCTTAACAAGAAGCCTCCCAAG 59.510 50.000 0.00 0.00 45.08 3.61
2023 2056 4.343814 ACATGTCAAGTTAACCCCAAAAGG 59.656 41.667 0.88 0.00 0.00 3.11
2041 2074 8.818057 GCGAGACAAAACTTAGAATATACATGT 58.182 33.333 2.69 2.69 0.00 3.21
2043 2076 8.942338 TGCGAGACAAAACTTAGAATATACAT 57.058 30.769 0.00 0.00 0.00 2.29
2045 2078 8.630278 TCTGCGAGACAAAACTTAGAATATAC 57.370 34.615 0.00 0.00 0.00 1.47
2055 2088 7.202016 TGATATTTTTCTGCGAGACAAAACT 57.798 32.000 0.00 0.00 29.03 2.66
2119 2152 6.140110 GTCATTATGTGTTTTGCGTACTTGT 58.860 36.000 0.00 0.00 0.00 3.16
2127 2160 5.842619 TTGCATGTCATTATGTGTTTTGC 57.157 34.783 0.00 0.00 0.00 3.68
2137 2170 7.636259 GCAACTAACTTTTTGCATGTCATTA 57.364 32.000 1.51 0.00 46.13 1.90
2179 2212 5.183140 AGGTTGCACATTTCTTGTATGTACC 59.817 40.000 0.00 0.00 36.57 3.34
2217 2250 7.803724 AGTTTACGTCCAAGCTAATTGTAAAG 58.196 34.615 0.00 0.00 37.17 1.85
2479 2515 3.114647 CTTCGAGTCCCTCTCCGCG 62.115 68.421 0.00 0.00 39.84 6.46
2593 2629 0.749818 CACGAGCAGAGAGGGCTAGA 60.750 60.000 0.00 0.00 42.78 2.43
2605 2641 1.375908 GAAGGCACCATCACGAGCA 60.376 57.895 0.00 0.00 0.00 4.26
2659 2695 3.047718 GACGAGTCCATCACGCCGA 62.048 63.158 0.00 0.00 33.71 5.54
2742 2778 4.733405 CGTTACCTTTTGCAGTGAAGTTTC 59.267 41.667 0.00 0.00 0.00 2.78
2766 2802 7.600375 CCATATGTCTGTATGTACTGATGTTCC 59.400 40.741 1.24 0.00 36.71 3.62
2767 2803 8.144478 ACCATATGTCTGTATGTACTGATGTTC 58.856 37.037 1.24 0.00 36.71 3.18
2768 2804 8.023021 ACCATATGTCTGTATGTACTGATGTT 57.977 34.615 1.24 0.00 36.71 2.71
2838 2875 8.523915 AATGATTGACCTATGCACATTCTAAA 57.476 30.769 0.00 0.00 0.00 1.85
2914 2951 6.877236 TCAAGATAGATGTAGTGTCATGCAA 58.123 36.000 0.00 0.00 0.00 4.08
3042 3084 3.699538 TCTCAGTGTCACAATATACGCCT 59.300 43.478 5.62 0.00 0.00 5.52
3075 3117 8.417273 AAAACCTGTACATTAAACATAAGGCT 57.583 30.769 0.00 0.00 0.00 4.58
3077 3119 9.763465 CGTAAAACCTGTACATTAAACATAAGG 57.237 33.333 0.00 0.00 0.00 2.69
3078 3120 9.763465 CCGTAAAACCTGTACATTAAACATAAG 57.237 33.333 0.00 0.00 0.00 1.73
3079 3121 8.235905 GCCGTAAAACCTGTACATTAAACATAA 58.764 33.333 0.00 0.00 0.00 1.90
3080 3122 7.412781 CGCCGTAAAACCTGTACATTAAACATA 60.413 37.037 0.00 0.00 0.00 2.29
3081 3123 6.614160 GCCGTAAAACCTGTACATTAAACAT 58.386 36.000 0.00 0.00 0.00 2.71
3160 3203 1.223187 ACAAACGGTCCGTGAATGAC 58.777 50.000 19.67 0.00 39.99 3.06
3199 3242 2.890474 GGGTCAGTGCCGTATGCG 60.890 66.667 0.00 0.00 45.60 4.73
3240 3283 0.952984 GCACTTCTTCTTGAGGCGCT 60.953 55.000 7.64 0.00 28.86 5.92
3370 3413 0.861837 GCGCCATATCCGAGTCAAAG 59.138 55.000 0.00 0.00 0.00 2.77
3373 3416 1.106944 TGAGCGCCATATCCGAGTCA 61.107 55.000 2.29 0.00 0.00 3.41
3382 3425 1.067416 GTCGTCCATGAGCGCCATA 59.933 57.895 2.29 0.00 33.31 2.74
3587 3647 6.019075 CGTATATCGTCAATTTCCTCAAAGCA 60.019 38.462 0.00 0.00 34.52 3.91
3588 3648 6.355638 CGTATATCGTCAATTTCCTCAAAGC 58.644 40.000 0.00 0.00 34.52 3.51
3630 3690 8.938906 CACCATATAAAAGCAAAGCAAAGAAAT 58.061 29.630 0.00 0.00 0.00 2.17
3639 3703 6.266168 TCACACCACCATATAAAAGCAAAG 57.734 37.500 0.00 0.00 0.00 2.77
3642 3706 6.849085 ATTTCACACCACCATATAAAAGCA 57.151 33.333 0.00 0.00 0.00 3.91
3644 3708 9.130661 TCCATATTTCACACCACCATATAAAAG 57.869 33.333 0.00 0.00 0.00 2.27
3689 3753 5.293560 TCACAACACAAATCGAGTGATACA 58.706 37.500 9.98 0.00 40.16 2.29
3690 3754 5.839262 TCACAACACAAATCGAGTGATAC 57.161 39.130 9.98 0.00 40.16 2.24
3694 3758 4.608470 CGAATTCACAACACAAATCGAGTG 59.392 41.667 6.22 2.01 42.56 3.51
3696 3760 4.772434 ACGAATTCACAACACAAATCGAG 58.228 39.130 6.22 0.00 0.00 4.04
3705 3769 5.123186 AGTGTTTCTTGACGAATTCACAACA 59.877 36.000 6.22 4.03 38.31 3.33
3718 3782 8.405418 AGTACTAGTACATGAGTGTTTCTTGA 57.595 34.615 29.87 0.00 39.77 3.02
3741 3808 7.362056 GGAAATGTGCAAACATGACATAGTAGT 60.362 37.037 0.00 0.00 30.07 2.73
3748 3815 2.964464 AGGGAAATGTGCAAACATGACA 59.036 40.909 0.00 0.00 0.00 3.58
3840 3907 9.474920 GATCACAATTCAGTAAAACATCCAAAA 57.525 29.630 0.00 0.00 0.00 2.44
3843 3910 6.652900 TCGATCACAATTCAGTAAAACATCCA 59.347 34.615 0.00 0.00 0.00 3.41
3859 3926 4.935205 CCCTGTTTACTTGATCGATCACAA 59.065 41.667 27.28 17.70 36.36 3.33
3864 3931 6.370718 GTGTTAACCCTGTTTACTTGATCGAT 59.629 38.462 0.00 0.00 0.00 3.59
3907 3974 1.138069 GGTTGAGGAAGGCTCTAGCTC 59.862 57.143 1.39 0.00 41.70 4.09
4024 4096 6.547880 TGTAAGCAATAGGGTTTCAGTTGAAA 59.452 34.615 3.28 3.28 41.29 2.69
4025 4097 6.065374 TGTAAGCAATAGGGTTTCAGTTGAA 58.935 36.000 0.00 0.00 38.39 2.69
4067 4763 4.207955 GGTTAAGATGGAGGGATTTGTCC 58.792 47.826 0.00 0.00 0.00 4.02
4087 4783 6.536582 CACGATTTGATCTATCTGAAAGTGGT 59.463 38.462 0.00 0.00 33.76 4.16
4103 4799 2.281831 TTGGCGGGCACGATTTGA 60.282 55.556 15.48 0.00 44.60 2.69
4125 4821 5.746721 GTCAATTTTGTGGTCAACCTTACAC 59.253 40.000 0.10 0.00 36.82 2.90
4132 4828 7.544217 AGTTTACTTGTCAATTTTGTGGTCAAC 59.456 33.333 0.00 0.00 32.93 3.18
4225 4921 5.784177 TGTTTGCCTGTTGTTTTCTGTAAA 58.216 33.333 0.00 0.00 0.00 2.01
4240 4936 3.118298 AGCTTTGTTGGAATTGTTTGCCT 60.118 39.130 0.00 0.00 0.00 4.75
4255 4951 4.918810 AAAATGAAACCGAGAGCTTTGT 57.081 36.364 0.00 0.00 0.00 2.83
4266 4962 9.103861 TGACACCTTAATTTCAAAAATGAAACC 57.896 29.630 6.17 0.00 40.12 3.27
4339 5037 2.753029 GCAAGCAGAGTGGGAGGT 59.247 61.111 0.00 0.00 0.00 3.85
4363 5061 1.358787 TGGACAATGGGGAAAGAGCAT 59.641 47.619 0.00 0.00 0.00 3.79
4424 5124 9.775539 TCTCTAAGGATATCCAATATAGCAAGT 57.224 33.333 23.81 0.00 38.89 3.16
4462 5162 5.591099 ACAATCGCAAGCCCAAATATTTAG 58.409 37.500 0.00 0.00 37.18 1.85
4478 5178 5.288712 TCGAGAAGATGTTTAAGACAATCGC 59.711 40.000 0.00 0.00 42.62 4.58
4486 5186 7.178712 AGTTGTTGTCGAGAAGATGTTTAAG 57.821 36.000 0.00 0.00 0.00 1.85
4504 5204 5.373812 TCTTCTCCTTCCAAGAAGTTGTT 57.626 39.130 11.46 0.00 46.42 2.83
4505 5205 5.574970 ATCTTCTCCTTCCAAGAAGTTGT 57.425 39.130 11.46 0.00 46.42 3.32
4506 5206 6.890979 AAATCTTCTCCTTCCAAGAAGTTG 57.109 37.500 11.46 0.00 46.42 3.16
4507 5207 6.836007 ACAAAATCTTCTCCTTCCAAGAAGTT 59.164 34.615 11.46 2.60 46.42 2.66
4508 5208 6.368805 ACAAAATCTTCTCCTTCCAAGAAGT 58.631 36.000 11.46 0.00 46.42 3.01
4510 5210 7.040409 GCTTACAAAATCTTCTCCTTCCAAGAA 60.040 37.037 0.00 0.00 32.40 2.52
4511 5211 6.431234 GCTTACAAAATCTTCTCCTTCCAAGA 59.569 38.462 0.00 0.00 33.18 3.02
4512 5212 6.207417 TGCTTACAAAATCTTCTCCTTCCAAG 59.793 38.462 0.00 0.00 0.00 3.61
4513 5213 6.068010 TGCTTACAAAATCTTCTCCTTCCAA 58.932 36.000 0.00 0.00 0.00 3.53
4514 5214 5.630121 TGCTTACAAAATCTTCTCCTTCCA 58.370 37.500 0.00 0.00 0.00 3.53
4515 5215 6.375455 TCATGCTTACAAAATCTTCTCCTTCC 59.625 38.462 0.00 0.00 0.00 3.46
4516 5216 7.383102 TCATGCTTACAAAATCTTCTCCTTC 57.617 36.000 0.00 0.00 0.00 3.46
4517 5217 6.376581 CCTCATGCTTACAAAATCTTCTCCTT 59.623 38.462 0.00 0.00 0.00 3.36
4518 5218 5.884792 CCTCATGCTTACAAAATCTTCTCCT 59.115 40.000 0.00 0.00 0.00 3.69
4519 5219 5.649831 ACCTCATGCTTACAAAATCTTCTCC 59.350 40.000 0.00 0.00 0.00 3.71
4520 5220 6.749923 ACCTCATGCTTACAAAATCTTCTC 57.250 37.500 0.00 0.00 0.00 2.87
4521 5221 8.635765 TTTACCTCATGCTTACAAAATCTTCT 57.364 30.769 0.00 0.00 0.00 2.85
4522 5222 9.346725 CTTTTACCTCATGCTTACAAAATCTTC 57.653 33.333 0.00 0.00 0.00 2.87
4523 5223 8.306761 CCTTTTACCTCATGCTTACAAAATCTT 58.693 33.333 0.00 0.00 0.00 2.40
4524 5224 7.451566 ACCTTTTACCTCATGCTTACAAAATCT 59.548 33.333 0.00 0.00 0.00 2.40
4525 5225 7.542130 CACCTTTTACCTCATGCTTACAAAATC 59.458 37.037 0.00 0.00 0.00 2.17
4526 5226 7.378181 CACCTTTTACCTCATGCTTACAAAAT 58.622 34.615 0.00 0.00 0.00 1.82
4527 5227 6.239176 CCACCTTTTACCTCATGCTTACAAAA 60.239 38.462 0.00 0.00 0.00 2.44
4528 5228 5.242838 CCACCTTTTACCTCATGCTTACAAA 59.757 40.000 0.00 0.00 0.00 2.83
4529 5229 4.764823 CCACCTTTTACCTCATGCTTACAA 59.235 41.667 0.00 0.00 0.00 2.41
4530 5230 4.202524 ACCACCTTTTACCTCATGCTTACA 60.203 41.667 0.00 0.00 0.00 2.41
4531 5231 4.332828 ACCACCTTTTACCTCATGCTTAC 58.667 43.478 0.00 0.00 0.00 2.34
4532 5232 4.650972 ACCACCTTTTACCTCATGCTTA 57.349 40.909 0.00 0.00 0.00 3.09
4533 5233 3.525800 ACCACCTTTTACCTCATGCTT 57.474 42.857 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.