Multiple sequence alignment - TraesCS1D01G080800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G080800 chr1D 100.000 3113 0 0 1 3113 63356056 63359168 0.000000e+00 5749.0
1 TraesCS1D01G080800 chr1D 87.413 1001 109 15 1269 2259 62936043 62937036 0.000000e+00 1134.0
2 TraesCS1D01G080800 chr1D 84.996 1113 148 15 1020 2120 62889870 62890975 0.000000e+00 1112.0
3 TraesCS1D01G080800 chr1D 96.000 275 10 1 188 461 10745974 10745700 2.200000e-121 446.0
4 TraesCS1D01G080800 chr1D 96.000 275 10 1 188 461 254441151 254441425 2.200000e-121 446.0
5 TraesCS1D01G080800 chr1D 82.751 429 52 16 841 1257 62935581 62935999 2.280000e-96 363.0
6 TraesCS1D01G080800 chr1D 90.000 130 9 4 528 656 298346383 298346257 6.910000e-37 165.0
7 TraesCS1D01G080800 chr1D 89.922 129 9 4 528 655 254441393 254441518 2.480000e-36 163.0
8 TraesCS1D01G080800 chr1D 100.000 28 0 0 3071 3098 377362645 377362672 6.000000e-03 52.8
9 TraesCS1D01G080800 chr1B 93.841 2062 93 12 426 2469 101142416 101144461 0.000000e+00 3073.0
10 TraesCS1D01G080800 chr1B 85.131 1493 183 23 832 2304 100630871 100632344 0.000000e+00 1491.0
11 TraesCS1D01G080800 chr1B 86.527 1002 111 19 1268 2259 100541741 100542728 0.000000e+00 1081.0
12 TraesCS1D01G080800 chr1B 84.007 1113 159 15 1020 2120 100422320 100423425 0.000000e+00 1051.0
13 TraesCS1D01G080800 chr1B 91.627 418 26 3 6 420 101141746 101142157 1.250000e-158 569.0
14 TraesCS1D01G080800 chr1B 84.823 481 50 16 2612 3087 100883053 100883515 2.190000e-126 462.0
15 TraesCS1D01G080800 chr1B 86.441 59 6 2 1205 1263 556064131 556064075 2.590000e-06 63.9
16 TraesCS1D01G080800 chr1A 95.734 1219 48 1 1255 2469 62254298 62253080 0.000000e+00 1960.0
17 TraesCS1D01G080800 chr1A 83.727 1481 196 37 798 2259 61340966 61342420 0.000000e+00 1358.0
18 TraesCS1D01G080800 chr1A 86.787 999 110 16 1270 2259 61032586 61033571 0.000000e+00 1094.0
19 TraesCS1D01G080800 chr1A 86.114 1001 115 18 1270 2259 61284449 61285436 0.000000e+00 1057.0
20 TraesCS1D01G080800 chr1A 93.032 531 21 4 731 1257 62254975 62254457 0.000000e+00 761.0
21 TraesCS1D01G080800 chr1A 88.567 621 49 17 2503 3112 62251591 62250982 0.000000e+00 734.0
22 TraesCS1D01G080800 chr1A 82.805 442 53 14 841 1262 61032099 61032537 1.050000e-99 374.0
23 TraesCS1D01G080800 chr1A 86.928 306 37 3 958 1262 61284097 61284400 1.070000e-89 340.0
24 TraesCS1D01G080800 chr1A 79.365 189 29 8 9 195 545756425 545756245 1.170000e-24 124.0
25 TraesCS1D01G080800 chr1A 100.000 32 0 0 2395 2426 62249686 62249655 3.350000e-05 60.2
26 TraesCS1D01G080800 chr1A 85.714 56 4 3 3051 3104 9589957 9589904 4.340000e-04 56.5
27 TraesCS1D01G080800 chr1A 100.000 29 0 0 2476 2504 62252973 62252945 2.000000e-03 54.7
28 TraesCS1D01G080800 chr2D 96.014 276 9 2 188 461 638430541 638430816 6.120000e-122 448.0
29 TraesCS1D01G080800 chr2D 85.455 55 6 2 3044 3098 478117028 478117080 4.340000e-04 56.5
30 TraesCS1D01G080800 chr5D 96.000 275 10 1 188 461 6269865 6269591 2.200000e-121 446.0
31 TraesCS1D01G080800 chr5D 95.652 276 10 2 188 461 6170799 6170524 2.850000e-120 442.0
32 TraesCS1D01G080800 chr5D 95.307 277 10 2 188 461 503298016 503298292 1.330000e-118 436.0
33 TraesCS1D01G080800 chr5D 90.076 131 10 3 527 656 329161611 329161483 1.920000e-37 167.0
34 TraesCS1D01G080800 chr5D 89.922 129 9 4 528 655 6269623 6269498 2.480000e-36 163.0
35 TraesCS1D01G080800 chr5D 89.922 129 9 4 528 655 503298260 503298385 2.480000e-36 163.0
36 TraesCS1D01G080800 chr5D 87.302 126 16 0 5 130 283013315 283013440 9.000000e-31 145.0
37 TraesCS1D01G080800 chr3D 95.652 276 10 2 188 461 323521160 323521435 2.850000e-120 442.0
38 TraesCS1D01G080800 chr3D 90.000 130 9 4 528 656 323521403 323521529 6.910000e-37 165.0
39 TraesCS1D01G080800 chr3D 85.827 127 18 0 4 130 5359005 5358879 5.420000e-28 135.0
40 TraesCS1D01G080800 chr6D 95.290 276 11 2 188 461 437601009 437600734 1.330000e-118 436.0
41 TraesCS1D01G080800 chr3A 85.448 268 28 8 324 589 9009288 9009030 5.120000e-68 268.0
42 TraesCS1D01G080800 chr3A 90.769 130 11 1 1 130 171541146 171541274 4.130000e-39 172.0
43 TraesCS1D01G080800 chr3A 82.584 178 19 5 4 177 697287702 697287533 2.500000e-31 147.0
44 TraesCS1D01G080800 chr3A 86.777 121 16 0 10 130 16154553 16154433 5.420000e-28 135.0
45 TraesCS1D01G080800 chr7B 90.000 130 9 4 528 656 358507916 358507790 6.910000e-37 165.0
46 TraesCS1D01G080800 chr6B 89.922 129 9 4 528 655 508640946 508640821 2.480000e-36 163.0
47 TraesCS1D01G080800 chr4A 87.402 127 16 0 4 130 537537759 537537633 2.500000e-31 147.0
48 TraesCS1D01G080800 chr7A 80.952 168 26 4 5 172 712668553 712668714 9.060000e-26 128.0
49 TraesCS1D01G080800 chr7D 97.059 34 1 0 3071 3104 582594392 582594359 1.210000e-04 58.4
50 TraesCS1D01G080800 chr5A 83.871 62 9 1 3044 3105 594952576 594952636 1.210000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G080800 chr1D 63356056 63359168 3112 False 5749.00 5749 100.0000 1 3113 1 chr1D.!!$F2 3112
1 TraesCS1D01G080800 chr1D 62889870 62890975 1105 False 1112.00 1112 84.9960 1020 2120 1 chr1D.!!$F1 1100
2 TraesCS1D01G080800 chr1D 62935581 62937036 1455 False 748.50 1134 85.0820 841 2259 2 chr1D.!!$F4 1418
3 TraesCS1D01G080800 chr1B 101141746 101144461 2715 False 1821.00 3073 92.7340 6 2469 2 chr1B.!!$F5 2463
4 TraesCS1D01G080800 chr1B 100630871 100632344 1473 False 1491.00 1491 85.1310 832 2304 1 chr1B.!!$F3 1472
5 TraesCS1D01G080800 chr1B 100541741 100542728 987 False 1081.00 1081 86.5270 1268 2259 1 chr1B.!!$F2 991
6 TraesCS1D01G080800 chr1B 100422320 100423425 1105 False 1051.00 1051 84.0070 1020 2120 1 chr1B.!!$F1 1100
7 TraesCS1D01G080800 chr1A 61340966 61342420 1454 False 1358.00 1358 83.7270 798 2259 1 chr1A.!!$F1 1461
8 TraesCS1D01G080800 chr1A 61032099 61033571 1472 False 734.00 1094 84.7960 841 2259 2 chr1A.!!$F2 1418
9 TraesCS1D01G080800 chr1A 62249655 62254975 5320 True 713.98 1960 95.4666 731 3112 5 chr1A.!!$R3 2381
10 TraesCS1D01G080800 chr1A 61284097 61285436 1339 False 698.50 1057 86.5210 958 2259 2 chr1A.!!$F3 1301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 1019 0.036671 GGTGTTAGGTGGACGGAAGG 60.037 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2570 6644 0.034863 GGAATGGGTCGGCCTTTGTA 60.035 55.0 5.77 0.0 34.45 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 2.288518 GGTAATCCCGATGTCTCTGCTC 60.289 54.545 0.00 0.00 0.00 4.26
132 133 0.799393 GGCGGTGCTTCTTCTTCTTC 59.201 55.000 0.00 0.00 0.00 2.87
133 134 1.609320 GGCGGTGCTTCTTCTTCTTCT 60.609 52.381 0.00 0.00 0.00 2.85
134 135 2.147150 GCGGTGCTTCTTCTTCTTCTT 58.853 47.619 0.00 0.00 0.00 2.52
135 136 2.158645 GCGGTGCTTCTTCTTCTTCTTC 59.841 50.000 0.00 0.00 0.00 2.87
136 137 3.658709 CGGTGCTTCTTCTTCTTCTTCT 58.341 45.455 0.00 0.00 0.00 2.85
137 138 4.061596 CGGTGCTTCTTCTTCTTCTTCTT 58.938 43.478 0.00 0.00 0.00 2.52
145 146 9.444534 GCTTCTTCTTCTTCTTCTTTAAGTTTG 57.555 33.333 0.00 0.00 34.13 2.93
168 169 4.154375 GTCTTTCGGGTTTTGATTCTCCTC 59.846 45.833 0.00 0.00 0.00 3.71
169 170 2.380084 TCGGGTTTTGATTCTCCTCG 57.620 50.000 0.00 0.00 0.00 4.63
177 178 5.334182 GGTTTTGATTCTCCTCGAGTTTGTC 60.334 44.000 12.31 3.65 0.00 3.18
180 181 0.038526 TTCTCCTCGAGTTTGTCCGC 60.039 55.000 12.31 0.00 0.00 5.54
219 220 8.698210 TCTTAAAGTGTGGTAGAAAGAACTACA 58.302 33.333 0.00 0.00 42.91 2.74
392 395 9.750125 AAAAATCTAAGACAATTCTTGACCAAC 57.250 29.630 0.00 0.00 42.41 3.77
492 749 7.379529 GTGAATGTTTCATGCTTAAATATCCCG 59.620 37.037 0.00 0.00 42.47 5.14
495 752 3.394674 TCATGCTTAAATATCCCGCGA 57.605 42.857 8.23 0.00 0.00 5.87
498 755 3.678056 TGCTTAAATATCCCGCGAGAT 57.322 42.857 8.23 8.42 0.00 2.75
499 756 3.325870 TGCTTAAATATCCCGCGAGATG 58.674 45.455 13.94 0.00 0.00 2.90
500 757 2.094417 GCTTAAATATCCCGCGAGATGC 59.906 50.000 13.94 2.92 41.47 3.91
502 759 2.550830 AAATATCCCGCGAGATGCTT 57.449 45.000 13.94 4.02 43.27 3.91
503 760 2.086054 AATATCCCGCGAGATGCTTC 57.914 50.000 13.94 0.00 43.27 3.86
504 761 0.969149 ATATCCCGCGAGATGCTTCA 59.031 50.000 13.94 0.00 43.27 3.02
505 762 0.750249 TATCCCGCGAGATGCTTCAA 59.250 50.000 13.94 0.00 43.27 2.69
506 763 0.107703 ATCCCGCGAGATGCTTCAAA 60.108 50.000 8.23 0.00 43.27 2.69
507 764 0.321210 TCCCGCGAGATGCTTCAAAA 60.321 50.000 8.23 0.00 43.27 2.44
508 765 0.097674 CCCGCGAGATGCTTCAAAAG 59.902 55.000 8.23 0.00 43.27 2.27
509 766 1.078709 CCGCGAGATGCTTCAAAAGA 58.921 50.000 8.23 0.00 43.27 2.52
510 767 1.061711 CCGCGAGATGCTTCAAAAGAG 59.938 52.381 8.23 0.00 43.27 2.85
511 768 1.528603 CGCGAGATGCTTCAAAAGAGC 60.529 52.381 0.00 0.00 43.27 4.09
583 840 4.808895 TGTGTGATATGCCGTGAATAGTTC 59.191 41.667 0.00 0.00 0.00 3.01
587 844 1.651987 ATGCCGTGAATAGTTCCGTG 58.348 50.000 0.00 0.00 0.00 4.94
599 856 3.840124 AGTTCCGTGGAAGAAAGTCTT 57.160 42.857 0.53 0.00 39.87 3.01
602 859 5.055144 AGTTCCGTGGAAGAAAGTCTTAAC 58.945 41.667 0.53 0.00 36.73 2.01
690 947 6.312918 TCCGGCATAGATTTCTTTATATTCGC 59.687 38.462 0.00 0.00 0.00 4.70
722 979 1.080705 GGTCGGTTCACTGGACGAG 60.081 63.158 0.00 0.00 35.88 4.18
762 1019 0.036671 GGTGTTAGGTGGACGGAAGG 60.037 60.000 0.00 0.00 0.00 3.46
775 1032 4.468510 TGGACGGAAGGAGCTAATAAAGAA 59.531 41.667 0.00 0.00 0.00 2.52
777 1034 4.767478 ACGGAAGGAGCTAATAAAGAACC 58.233 43.478 0.00 0.00 0.00 3.62
810 1067 1.480954 ACACGCGGATATGGTCTTCTT 59.519 47.619 12.47 0.00 0.00 2.52
838 1097 1.511318 GGTACCATGCACAACACGCA 61.511 55.000 7.15 0.00 44.94 5.24
849 1109 3.316283 CACAACACGCATAGCCAATTTT 58.684 40.909 0.00 0.00 0.00 1.82
904 1169 1.244816 CACATATCCAGCCAGCCATG 58.755 55.000 0.00 0.00 0.00 3.66
953 1222 0.316841 GAATCTGGAGAGCTAGGGCG 59.683 60.000 0.00 0.00 44.37 6.13
1149 1429 4.473520 CCGCAGGCCGAGGACATT 62.474 66.667 10.93 0.00 46.14 2.71
1279 1724 1.396996 GCATTCCACCACGTGTACATC 59.603 52.381 15.65 0.00 0.00 3.06
1303 1748 1.822990 GTACCTGATCTGACCGTTGGA 59.177 52.381 0.38 0.00 0.00 3.53
2183 2631 1.461888 GCTTGTGTGTACGTCAATCGC 60.462 52.381 0.00 0.00 44.19 4.58
2313 6381 9.581099 GTGTATGGGTAATAATTTTCAAAGTGG 57.419 33.333 0.00 0.00 0.00 4.00
2315 6383 9.797556 GTATGGGTAATAATTTTCAAAGTGGTC 57.202 33.333 0.00 0.00 0.00 4.02
2387 6455 7.890127 ACATCAGAAAGAATAATTGTTCTCCCA 59.110 33.333 16.68 2.24 37.46 4.37
2464 6538 2.427453 ACATAGCTAGAAGTGTCACCCG 59.573 50.000 0.00 0.00 0.00 5.28
2469 6543 1.798813 CTAGAAGTGTCACCCGCAAAC 59.201 52.381 0.00 0.00 0.00 2.93
2470 6544 0.818040 AGAAGTGTCACCCGCAAACC 60.818 55.000 0.00 0.00 0.00 3.27
2471 6545 1.077357 AAGTGTCACCCGCAAACCA 60.077 52.632 0.00 0.00 0.00 3.67
2472 6546 1.101049 AAGTGTCACCCGCAAACCAG 61.101 55.000 0.00 0.00 0.00 4.00
2473 6547 1.525077 GTGTCACCCGCAAACCAGA 60.525 57.895 0.00 0.00 0.00 3.86
2474 6548 1.098712 GTGTCACCCGCAAACCAGAA 61.099 55.000 0.00 0.00 0.00 3.02
2475 6549 0.179004 TGTCACCCGCAAACCAGAAT 60.179 50.000 0.00 0.00 0.00 2.40
2476 6550 1.072489 TGTCACCCGCAAACCAGAATA 59.928 47.619 0.00 0.00 0.00 1.75
2477 6551 1.737793 GTCACCCGCAAACCAGAATAG 59.262 52.381 0.00 0.00 0.00 1.73
2478 6552 0.451783 CACCCGCAAACCAGAATAGC 59.548 55.000 0.00 0.00 0.00 2.97
2479 6553 0.328258 ACCCGCAAACCAGAATAGCT 59.672 50.000 0.00 0.00 0.00 3.32
2480 6554 1.557832 ACCCGCAAACCAGAATAGCTA 59.442 47.619 0.00 0.00 0.00 3.32
2481 6555 2.213499 CCCGCAAACCAGAATAGCTAG 58.787 52.381 0.00 0.00 0.00 3.42
2482 6556 1.599542 CCGCAAACCAGAATAGCTAGC 59.400 52.381 6.62 6.62 0.00 3.42
2483 6557 2.555199 CGCAAACCAGAATAGCTAGCT 58.445 47.619 23.12 23.12 0.00 3.32
2484 6558 3.492656 CCGCAAACCAGAATAGCTAGCTA 60.493 47.826 26.09 26.09 0.00 3.32
2485 6559 4.310769 CGCAAACCAGAATAGCTAGCTAT 58.689 43.478 28.08 28.08 40.63 2.97
2487 6561 5.237344 CGCAAACCAGAATAGCTAGCTATTT 59.763 40.000 37.89 27.53 45.88 1.40
2488 6562 6.433766 GCAAACCAGAATAGCTAGCTATTTG 58.566 40.000 37.89 32.96 45.88 2.32
2489 6563 6.514048 GCAAACCAGAATAGCTAGCTATTTGG 60.514 42.308 38.26 38.26 45.88 3.28
2490 6564 6.500589 AACCAGAATAGCTAGCTATTTGGA 57.499 37.500 41.58 25.17 45.88 3.53
2491 6565 6.500589 ACCAGAATAGCTAGCTATTTGGAA 57.499 37.500 41.58 24.65 45.88 3.53
2492 6566 7.084268 ACCAGAATAGCTAGCTATTTGGAAT 57.916 36.000 41.58 31.76 45.88 3.01
2493 6567 6.939163 ACCAGAATAGCTAGCTATTTGGAATG 59.061 38.462 41.58 33.12 45.88 2.67
2494 6568 6.373774 CCAGAATAGCTAGCTATTTGGAATGG 59.626 42.308 37.91 33.31 45.88 3.16
2495 6569 6.373774 CAGAATAGCTAGCTATTTGGAATGGG 59.626 42.308 37.89 22.10 45.88 4.00
2496 6570 3.515602 AGCTAGCTATTTGGAATGGGG 57.484 47.619 17.69 0.00 0.00 4.96
2497 6571 1.889170 GCTAGCTATTTGGAATGGGGC 59.111 52.381 7.70 0.00 0.00 5.80
2498 6572 2.519013 CTAGCTATTTGGAATGGGGCC 58.481 52.381 0.00 0.00 0.00 5.80
2499 6573 0.636101 AGCTATTTGGAATGGGGCCA 59.364 50.000 4.39 0.00 0.00 5.36
2500 6574 1.043022 GCTATTTGGAATGGGGCCAG 58.957 55.000 4.39 0.00 36.64 4.85
2501 6575 1.689258 GCTATTTGGAATGGGGCCAGT 60.689 52.381 4.39 0.00 36.64 4.00
2502 6576 2.034124 CTATTTGGAATGGGGCCAGTG 58.966 52.381 4.39 0.00 36.64 3.66
2503 6577 0.413037 ATTTGGAATGGGGCCAGTGA 59.587 50.000 4.39 0.00 36.64 3.41
2504 6578 0.413037 TTTGGAATGGGGCCAGTGAT 59.587 50.000 4.39 0.00 36.64 3.06
2505 6579 0.413037 TTGGAATGGGGCCAGTGATT 59.587 50.000 4.39 0.00 36.64 2.57
2506 6580 0.324552 TGGAATGGGGCCAGTGATTG 60.325 55.000 4.39 0.00 0.00 2.67
2520 6594 6.436843 CCAGTGATTGGTGGTTTCTAATAC 57.563 41.667 0.00 0.00 42.41 1.89
2521 6595 5.357032 CCAGTGATTGGTGGTTTCTAATACC 59.643 44.000 0.00 0.00 42.41 2.73
2522 6596 5.064707 CAGTGATTGGTGGTTTCTAATACCG 59.935 44.000 0.00 0.00 38.55 4.02
2523 6597 3.942748 TGATTGGTGGTTTCTAATACCGC 59.057 43.478 0.00 0.00 43.77 5.68
2528 6602 2.681344 GTGGTTTCTAATACCGCCTTGG 59.319 50.000 0.00 0.00 46.41 3.61
2540 6614 3.252974 CCGCCTTGGTCTATGGATATC 57.747 52.381 0.00 0.00 0.00 1.63
2541 6615 2.417379 CCGCCTTGGTCTATGGATATCG 60.417 54.545 0.00 0.00 0.00 2.92
2542 6616 2.492088 CGCCTTGGTCTATGGATATCGA 59.508 50.000 0.00 0.00 0.00 3.59
2543 6617 3.673594 CGCCTTGGTCTATGGATATCGAC 60.674 52.174 0.00 0.00 0.00 4.20
2544 6618 3.673594 GCCTTGGTCTATGGATATCGACG 60.674 52.174 0.00 0.00 31.62 5.12
2545 6619 3.756963 CCTTGGTCTATGGATATCGACGA 59.243 47.826 0.00 0.00 31.62 4.20
2546 6620 4.217767 CCTTGGTCTATGGATATCGACGAA 59.782 45.833 0.00 1.89 31.62 3.85
2547 6621 5.278808 CCTTGGTCTATGGATATCGACGAAA 60.279 44.000 0.00 0.00 30.37 3.46
2548 6622 5.777850 TGGTCTATGGATATCGACGAAAA 57.222 39.130 0.00 0.00 31.62 2.29
2549 6623 5.526115 TGGTCTATGGATATCGACGAAAAC 58.474 41.667 0.00 0.00 31.62 2.43
2550 6624 4.922103 GGTCTATGGATATCGACGAAAACC 59.078 45.833 0.00 6.15 31.62 3.27
2551 6625 5.278858 GGTCTATGGATATCGACGAAAACCT 60.279 44.000 0.00 0.00 31.62 3.50
2552 6626 5.629849 GTCTATGGATATCGACGAAAACCTG 59.370 44.000 0.00 1.68 0.00 4.00
2553 6627 2.546778 TGGATATCGACGAAAACCTGC 58.453 47.619 0.00 0.00 0.00 4.85
2554 6628 2.093921 TGGATATCGACGAAAACCTGCA 60.094 45.455 0.00 0.00 0.00 4.41
2555 6629 2.284417 GGATATCGACGAAAACCTGCAC 59.716 50.000 0.00 0.00 0.00 4.57
2556 6630 2.736144 TATCGACGAAAACCTGCACT 57.264 45.000 0.00 0.00 0.00 4.40
2557 6631 2.736144 ATCGACGAAAACCTGCACTA 57.264 45.000 0.00 0.00 0.00 2.74
2558 6632 2.060326 TCGACGAAAACCTGCACTAG 57.940 50.000 0.00 0.00 0.00 2.57
2559 6633 0.438830 CGACGAAAACCTGCACTAGC 59.561 55.000 0.00 0.00 42.57 3.42
2560 6634 0.438830 GACGAAAACCTGCACTAGCG 59.561 55.000 0.00 0.00 46.23 4.26
2561 6635 0.249741 ACGAAAACCTGCACTAGCGT 60.250 50.000 0.00 0.00 46.23 5.07
2562 6636 1.000060 ACGAAAACCTGCACTAGCGTA 60.000 47.619 0.00 0.00 46.23 4.42
2563 6637 1.389106 CGAAAACCTGCACTAGCGTAC 59.611 52.381 0.00 0.00 46.23 3.67
2564 6638 2.685100 GAAAACCTGCACTAGCGTACT 58.315 47.619 0.00 0.00 46.23 2.73
2565 6639 2.365408 AAACCTGCACTAGCGTACTC 57.635 50.000 0.00 0.00 46.23 2.59
2566 6640 1.254026 AACCTGCACTAGCGTACTCA 58.746 50.000 0.00 0.00 46.23 3.41
2567 6641 1.475403 ACCTGCACTAGCGTACTCAT 58.525 50.000 0.00 0.00 46.23 2.90
2568 6642 1.135139 ACCTGCACTAGCGTACTCATG 59.865 52.381 0.00 0.00 46.23 3.07
2569 6643 1.203928 CTGCACTAGCGTACTCATGC 58.796 55.000 0.00 0.00 46.23 4.06
2571 6645 2.021457 TGCACTAGCGTACTCATGCTA 58.979 47.619 7.85 4.71 45.41 3.49
2572 6646 2.223502 TGCACTAGCGTACTCATGCTAC 60.224 50.000 7.85 0.00 45.41 3.58
2573 6647 2.223502 GCACTAGCGTACTCATGCTACA 60.224 50.000 0.00 0.00 45.41 2.74
2574 6648 3.733988 GCACTAGCGTACTCATGCTACAA 60.734 47.826 0.00 0.00 45.41 2.41
2575 6649 4.421058 CACTAGCGTACTCATGCTACAAA 58.579 43.478 0.00 0.00 45.41 2.83
2576 6650 4.500837 CACTAGCGTACTCATGCTACAAAG 59.499 45.833 0.00 0.00 45.41 2.77
2577 6651 2.893637 AGCGTACTCATGCTACAAAGG 58.106 47.619 0.00 0.00 45.41 3.11
2578 6652 1.327764 GCGTACTCATGCTACAAAGGC 59.672 52.381 0.00 0.00 33.61 4.35
2579 6653 1.933853 CGTACTCATGCTACAAAGGCC 59.066 52.381 0.00 0.00 0.00 5.19
2580 6654 1.933853 GTACTCATGCTACAAAGGCCG 59.066 52.381 0.00 0.00 0.00 6.13
2581 6655 0.613260 ACTCATGCTACAAAGGCCGA 59.387 50.000 0.00 0.00 0.00 5.54
2582 6656 1.009829 CTCATGCTACAAAGGCCGAC 58.990 55.000 0.00 0.00 0.00 4.79
2583 6657 0.392461 TCATGCTACAAAGGCCGACC 60.392 55.000 0.00 0.00 0.00 4.79
2584 6658 1.077716 ATGCTACAAAGGCCGACCC 60.078 57.895 0.00 0.00 36.11 4.46
2585 6659 1.847798 ATGCTACAAAGGCCGACCCA 61.848 55.000 0.00 0.00 36.11 4.51
2586 6660 1.077716 GCTACAAAGGCCGACCCAT 60.078 57.895 0.00 0.00 36.11 4.00
2587 6661 0.679960 GCTACAAAGGCCGACCCATT 60.680 55.000 0.00 0.00 36.11 3.16
2588 6662 1.379527 CTACAAAGGCCGACCCATTC 58.620 55.000 0.00 0.00 36.11 2.67
2589 6663 0.034863 TACAAAGGCCGACCCATTCC 60.035 55.000 0.00 0.00 36.11 3.01
2590 6664 2.045340 AAAGGCCGACCCATTCCG 60.045 61.111 0.00 0.00 36.11 4.30
2604 6678 3.361786 CCATTCCGGGGTTTTTCTATGT 58.638 45.455 0.00 0.00 0.00 2.29
2605 6679 3.380320 CCATTCCGGGGTTTTTCTATGTC 59.620 47.826 0.00 0.00 0.00 3.06
2606 6680 4.270008 CATTCCGGGGTTTTTCTATGTCT 58.730 43.478 0.00 0.00 0.00 3.41
2607 6681 4.376225 TTCCGGGGTTTTTCTATGTCTT 57.624 40.909 0.00 0.00 0.00 3.01
2608 6682 4.376225 TCCGGGGTTTTTCTATGTCTTT 57.624 40.909 0.00 0.00 0.00 2.52
2609 6683 4.732065 TCCGGGGTTTTTCTATGTCTTTT 58.268 39.130 0.00 0.00 0.00 2.27
2610 6684 5.141910 TCCGGGGTTTTTCTATGTCTTTTT 58.858 37.500 0.00 0.00 0.00 1.94
2611 6685 5.242171 TCCGGGGTTTTTCTATGTCTTTTTC 59.758 40.000 0.00 0.00 0.00 2.29
2612 6686 5.466819 CGGGGTTTTTCTATGTCTTTTTCC 58.533 41.667 0.00 0.00 0.00 3.13
2613 6687 5.010213 CGGGGTTTTTCTATGTCTTTTTCCA 59.990 40.000 0.00 0.00 0.00 3.53
2614 6688 6.455647 GGGGTTTTTCTATGTCTTTTTCCAG 58.544 40.000 0.00 0.00 0.00 3.86
2615 6689 5.926542 GGGTTTTTCTATGTCTTTTTCCAGC 59.073 40.000 0.00 0.00 0.00 4.85
2616 6690 5.926542 GGTTTTTCTATGTCTTTTTCCAGCC 59.073 40.000 0.00 0.00 0.00 4.85
2617 6691 5.371115 TTTTCTATGTCTTTTTCCAGCCG 57.629 39.130 0.00 0.00 0.00 5.52
2618 6692 3.695830 TCTATGTCTTTTTCCAGCCGT 57.304 42.857 0.00 0.00 0.00 5.68
2619 6693 4.015872 TCTATGTCTTTTTCCAGCCGTT 57.984 40.909 0.00 0.00 0.00 4.44
2620 6694 4.000988 TCTATGTCTTTTTCCAGCCGTTC 58.999 43.478 0.00 0.00 0.00 3.95
2621 6695 2.341846 TGTCTTTTTCCAGCCGTTCT 57.658 45.000 0.00 0.00 0.00 3.01
2622 6696 2.650322 TGTCTTTTTCCAGCCGTTCTT 58.350 42.857 0.00 0.00 0.00 2.52
2623 6697 2.357637 TGTCTTTTTCCAGCCGTTCTTG 59.642 45.455 0.00 0.00 0.00 3.02
2624 6698 2.616842 GTCTTTTTCCAGCCGTTCTTGA 59.383 45.455 0.00 0.00 0.00 3.02
2625 6699 2.878406 TCTTTTTCCAGCCGTTCTTGAG 59.122 45.455 0.00 0.00 0.00 3.02
2626 6700 2.631160 TTTTCCAGCCGTTCTTGAGA 57.369 45.000 0.00 0.00 0.00 3.27
2627 6701 2.631160 TTTCCAGCCGTTCTTGAGAA 57.369 45.000 0.00 0.00 0.00 2.87
2628 6702 2.169832 TTCCAGCCGTTCTTGAGAAG 57.830 50.000 0.00 0.00 34.27 2.85
2629 6703 0.321671 TCCAGCCGTTCTTGAGAAGG 59.678 55.000 6.49 6.49 39.04 3.46
2630 6704 0.035458 CCAGCCGTTCTTGAGAAGGT 59.965 55.000 11.23 0.00 38.01 3.50
2631 6705 1.543429 CCAGCCGTTCTTGAGAAGGTT 60.543 52.381 11.23 3.75 38.01 3.50
2632 6706 1.801178 CAGCCGTTCTTGAGAAGGTTC 59.199 52.381 11.23 4.56 38.01 3.62
2633 6707 0.790814 GCCGTTCTTGAGAAGGTTCG 59.209 55.000 11.23 4.27 38.01 3.95
2634 6708 1.604693 GCCGTTCTTGAGAAGGTTCGA 60.605 52.381 11.23 0.00 38.01 3.71
2635 6709 2.329379 CCGTTCTTGAGAAGGTTCGAG 58.671 52.381 11.23 0.00 38.01 4.04
2636 6710 2.030185 CCGTTCTTGAGAAGGTTCGAGA 60.030 50.000 11.23 0.00 38.01 4.04
2637 6711 3.552273 CCGTTCTTGAGAAGGTTCGAGAA 60.552 47.826 11.23 2.37 42.55 2.87
2648 6722 0.974383 GTTCGAGAACCTTCCCAGGA 59.026 55.000 4.72 0.00 44.19 3.86
2649 6723 0.974383 TTCGAGAACCTTCCCAGGAC 59.026 55.000 0.00 0.00 44.19 3.85
2650 6724 0.903454 TCGAGAACCTTCCCAGGACC 60.903 60.000 0.00 0.00 44.19 4.46
2651 6725 0.905337 CGAGAACCTTCCCAGGACCT 60.905 60.000 0.00 0.00 44.19 3.85
2652 6726 1.363246 GAGAACCTTCCCAGGACCTT 58.637 55.000 0.00 0.00 44.19 3.50
2653 6727 1.705745 GAGAACCTTCCCAGGACCTTT 59.294 52.381 0.00 0.00 44.19 3.11
2654 6728 2.108425 GAGAACCTTCCCAGGACCTTTT 59.892 50.000 0.00 0.00 44.19 2.27
2655 6729 2.518407 AGAACCTTCCCAGGACCTTTTT 59.482 45.455 0.00 0.00 44.19 1.94
2656 6730 2.677542 ACCTTCCCAGGACCTTTTTC 57.322 50.000 0.00 0.00 44.19 2.29
2657 6731 2.144450 ACCTTCCCAGGACCTTTTTCT 58.856 47.619 0.00 0.00 44.19 2.52
2658 6732 2.158460 ACCTTCCCAGGACCTTTTTCTG 60.158 50.000 0.00 0.00 44.19 3.02
2659 6733 2.158460 CCTTCCCAGGACCTTTTTCTGT 60.158 50.000 0.00 0.00 44.19 3.41
2660 6734 2.656947 TCCCAGGACCTTTTTCTGTG 57.343 50.000 0.00 0.00 0.00 3.66
2661 6735 1.850345 TCCCAGGACCTTTTTCTGTGT 59.150 47.619 0.00 0.00 0.00 3.72
2662 6736 2.243736 TCCCAGGACCTTTTTCTGTGTT 59.756 45.455 0.00 0.00 0.00 3.32
2663 6737 3.031013 CCCAGGACCTTTTTCTGTGTTT 58.969 45.455 0.00 0.00 0.00 2.83
2664 6738 3.068165 CCCAGGACCTTTTTCTGTGTTTC 59.932 47.826 0.00 0.00 0.00 2.78
2665 6739 3.954258 CCAGGACCTTTTTCTGTGTTTCT 59.046 43.478 0.00 0.00 0.00 2.52
2666 6740 4.402474 CCAGGACCTTTTTCTGTGTTTCTT 59.598 41.667 0.00 0.00 0.00 2.52
2667 6741 5.105351 CCAGGACCTTTTTCTGTGTTTCTTT 60.105 40.000 0.00 0.00 0.00 2.52
2668 6742 6.398095 CAGGACCTTTTTCTGTGTTTCTTTT 58.602 36.000 0.00 0.00 0.00 2.27
2669 6743 6.873605 CAGGACCTTTTTCTGTGTTTCTTTTT 59.126 34.615 0.00 0.00 0.00 1.94
2670 6744 8.032451 CAGGACCTTTTTCTGTGTTTCTTTTTA 58.968 33.333 0.00 0.00 0.00 1.52
2671 6745 8.033038 AGGACCTTTTTCTGTGTTTCTTTTTAC 58.967 33.333 0.00 0.00 0.00 2.01
2672 6746 7.277098 GGACCTTTTTCTGTGTTTCTTTTTACC 59.723 37.037 0.00 0.00 0.00 2.85
2673 6747 7.672240 ACCTTTTTCTGTGTTTCTTTTTACCA 58.328 30.769 0.00 0.00 0.00 3.25
2674 6748 7.817478 ACCTTTTTCTGTGTTTCTTTTTACCAG 59.183 33.333 0.00 0.00 0.00 4.00
2675 6749 7.201522 CCTTTTTCTGTGTTTCTTTTTACCAGC 60.202 37.037 0.00 0.00 0.00 4.85
2676 6750 4.911514 TCTGTGTTTCTTTTTACCAGCC 57.088 40.909 0.00 0.00 0.00 4.85
2677 6751 4.532834 TCTGTGTTTCTTTTTACCAGCCT 58.467 39.130 0.00 0.00 0.00 4.58
2678 6752 4.953579 TCTGTGTTTCTTTTTACCAGCCTT 59.046 37.500 0.00 0.00 0.00 4.35
2679 6753 5.420739 TCTGTGTTTCTTTTTACCAGCCTTT 59.579 36.000 0.00 0.00 0.00 3.11
2680 6754 6.043854 TGTGTTTCTTTTTACCAGCCTTTT 57.956 33.333 0.00 0.00 0.00 2.27
2681 6755 7.122948 TCTGTGTTTCTTTTTACCAGCCTTTTA 59.877 33.333 0.00 0.00 0.00 1.52
2682 6756 7.787028 TGTGTTTCTTTTTACCAGCCTTTTAT 58.213 30.769 0.00 0.00 0.00 1.40
2683 6757 8.261522 TGTGTTTCTTTTTACCAGCCTTTTATT 58.738 29.630 0.00 0.00 0.00 1.40
2684 6758 8.761497 GTGTTTCTTTTTACCAGCCTTTTATTC 58.239 33.333 0.00 0.00 0.00 1.75
2685 6759 7.929245 TGTTTCTTTTTACCAGCCTTTTATTCC 59.071 33.333 0.00 0.00 0.00 3.01
2686 6760 7.849322 TTCTTTTTACCAGCCTTTTATTCCT 57.151 32.000 0.00 0.00 0.00 3.36
2687 6761 7.849322 TCTTTTTACCAGCCTTTTATTCCTT 57.151 32.000 0.00 0.00 0.00 3.36
2688 6762 8.257602 TCTTTTTACCAGCCTTTTATTCCTTT 57.742 30.769 0.00 0.00 0.00 3.11
2689 6763 8.710239 TCTTTTTACCAGCCTTTTATTCCTTTT 58.290 29.630 0.00 0.00 0.00 2.27
2690 6764 9.337396 CTTTTTACCAGCCTTTTATTCCTTTTT 57.663 29.630 0.00 0.00 0.00 1.94
2691 6765 8.896320 TTTTACCAGCCTTTTATTCCTTTTTC 57.104 30.769 0.00 0.00 0.00 2.29
2692 6766 7.849322 TTACCAGCCTTTTATTCCTTTTTCT 57.151 32.000 0.00 0.00 0.00 2.52
2693 6767 6.747414 ACCAGCCTTTTATTCCTTTTTCTT 57.253 33.333 0.00 0.00 0.00 2.52
2694 6768 7.136822 ACCAGCCTTTTATTCCTTTTTCTTT 57.863 32.000 0.00 0.00 0.00 2.52
2695 6769 7.573710 ACCAGCCTTTTATTCCTTTTTCTTTT 58.426 30.769 0.00 0.00 0.00 2.27
2696 6770 8.052748 ACCAGCCTTTTATTCCTTTTTCTTTTT 58.947 29.630 0.00 0.00 0.00 1.94
2697 6771 8.559536 CCAGCCTTTTATTCCTTTTTCTTTTTC 58.440 33.333 0.00 0.00 0.00 2.29
2698 6772 9.330063 CAGCCTTTTATTCCTTTTTCTTTTTCT 57.670 29.630 0.00 0.00 0.00 2.52
2699 6773 9.905713 AGCCTTTTATTCCTTTTTCTTTTTCTT 57.094 25.926 0.00 0.00 0.00 2.52
2799 6873 9.631257 ATCTTTCCTTTTTCATTTCCACATTTT 57.369 25.926 0.00 0.00 0.00 1.82
2800 6874 9.108284 TCTTTCCTTTTTCATTTCCACATTTTC 57.892 29.630 0.00 0.00 0.00 2.29
2801 6875 8.798859 TTTCCTTTTTCATTTCCACATTTTCA 57.201 26.923 0.00 0.00 0.00 2.69
2802 6876 8.798859 TTCCTTTTTCATTTCCACATTTTCAA 57.201 26.923 0.00 0.00 0.00 2.69
2803 6877 8.798859 TCCTTTTTCATTTCCACATTTTCAAA 57.201 26.923 0.00 0.00 0.00 2.69
2804 6878 9.406113 TCCTTTTTCATTTCCACATTTTCAAAT 57.594 25.926 0.00 0.00 0.00 2.32
2808 6882 9.798994 TTTTCATTTCCACATTTTCAAATTTGG 57.201 25.926 17.90 10.16 44.03 3.28
2809 6883 7.507733 TCATTTCCACATTTTCAAATTTGGG 57.492 32.000 17.90 9.33 43.28 4.12
2810 6884 7.285566 TCATTTCCACATTTTCAAATTTGGGA 58.714 30.769 17.90 11.42 43.28 4.37
2811 6885 7.776969 TCATTTCCACATTTTCAAATTTGGGAA 59.223 29.630 17.90 16.14 43.95 3.97
2812 6886 8.709272 ATTTCCACATTTTCAAATTTGGGAAT 57.291 26.923 17.90 14.56 43.85 3.01
2813 6887 7.507733 TTCCACATTTTCAAATTTGGGAATG 57.492 32.000 27.40 27.40 43.28 2.67
2814 6888 6.835174 TCCACATTTTCAAATTTGGGAATGA 58.165 32.000 31.49 18.82 43.28 2.57
2815 6889 7.460071 TCCACATTTTCAAATTTGGGAATGAT 58.540 30.769 31.49 21.41 43.28 2.45
2816 6890 7.943447 TCCACATTTTCAAATTTGGGAATGATT 59.057 29.630 31.49 19.25 43.28 2.57
2817 6891 9.228949 CCACATTTTCAAATTTGGGAATGATTA 57.771 29.630 31.49 12.79 40.74 1.75
2822 6896 9.935241 TTTTCAAATTTGGGAATGATTATCGAA 57.065 25.926 17.90 0.00 0.00 3.71
2823 6897 9.585099 TTTCAAATTTGGGAATGATTATCGAAG 57.415 29.630 17.90 0.00 0.00 3.79
2824 6898 8.518430 TCAAATTTGGGAATGATTATCGAAGA 57.482 30.769 17.90 0.00 45.75 2.87
2825 6899 9.135189 TCAAATTTGGGAATGATTATCGAAGAT 57.865 29.630 17.90 0.00 45.12 2.40
2826 6900 9.188588 CAAATTTGGGAATGATTATCGAAGATG 57.811 33.333 10.49 0.00 45.12 2.90
2827 6901 6.882610 TTTGGGAATGATTATCGAAGATGG 57.117 37.500 0.00 0.00 45.12 3.51
2828 6902 4.326826 TGGGAATGATTATCGAAGATGGC 58.673 43.478 0.00 0.00 45.12 4.40
2829 6903 4.202451 TGGGAATGATTATCGAAGATGGCA 60.202 41.667 0.00 0.00 45.12 4.92
2830 6904 4.761739 GGGAATGATTATCGAAGATGGCAA 59.238 41.667 0.00 0.00 45.12 4.52
2831 6905 5.241506 GGGAATGATTATCGAAGATGGCAAA 59.758 40.000 0.00 0.00 45.12 3.68
2832 6906 6.239008 GGGAATGATTATCGAAGATGGCAAAA 60.239 38.462 0.00 0.00 45.12 2.44
2833 6907 7.202526 GGAATGATTATCGAAGATGGCAAAAA 58.797 34.615 0.00 0.00 45.12 1.94
3028 7102 9.921637 TTGAATTGGTAAACAACTTATGAATCC 57.078 29.630 0.00 0.00 42.94 3.01
3029 7103 9.083422 TGAATTGGTAAACAACTTATGAATCCA 57.917 29.630 0.00 0.00 42.94 3.41
3110 7184 9.801873 ATTCATGAACATTTAATAAAAGTCGGG 57.198 29.630 11.07 0.00 0.00 5.14
3111 7185 8.568676 TCATGAACATTTAATAAAAGTCGGGA 57.431 30.769 0.00 0.00 0.00 5.14
3112 7186 8.455682 TCATGAACATTTAATAAAAGTCGGGAC 58.544 33.333 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.434309 ACCTAAACTACTAACCGGAGCA 58.566 45.455 9.46 0.00 0.00 4.26
54 55 4.711846 ACCCTAACCTAAACTACTAACCGG 59.288 45.833 0.00 0.00 0.00 5.28
109 110 0.678048 AAGAAGAAGCACCGCCATCC 60.678 55.000 0.00 0.00 0.00 3.51
132 133 6.373186 ACCCGAAAGACAAACTTAAAGAAG 57.627 37.500 0.00 0.00 37.93 2.85
133 134 6.762702 AACCCGAAAGACAAACTTAAAGAA 57.237 33.333 0.00 0.00 37.93 2.52
134 135 6.762702 AAACCCGAAAGACAAACTTAAAGA 57.237 33.333 0.00 0.00 37.93 2.52
135 136 7.030768 TCAAAACCCGAAAGACAAACTTAAAG 58.969 34.615 0.00 0.00 37.93 1.85
136 137 6.921914 TCAAAACCCGAAAGACAAACTTAAA 58.078 32.000 0.00 0.00 37.93 1.52
137 138 6.512342 TCAAAACCCGAAAGACAAACTTAA 57.488 33.333 0.00 0.00 37.93 1.85
145 146 4.072839 AGGAGAATCAAAACCCGAAAGAC 58.927 43.478 0.00 0.00 36.25 3.01
151 152 2.271800 CTCGAGGAGAATCAAAACCCG 58.728 52.381 3.91 0.00 36.25 5.28
168 169 4.354155 TCCAAGCGGACAAACTCG 57.646 55.556 0.00 0.00 35.91 4.18
177 178 1.826385 AAGATTCCAAGTCCAAGCGG 58.174 50.000 0.00 0.00 0.00 5.52
180 181 6.294176 CCACACTTTAAGATTCCAAGTCCAAG 60.294 42.308 0.00 0.00 0.00 3.61
190 191 9.274206 AGTTCTTTCTACCACACTTTAAGATTC 57.726 33.333 0.00 0.00 0.00 2.52
229 230 7.507733 AGAAAGACTCTAAAGTGTCGTAGAA 57.492 36.000 6.55 0.00 41.78 2.10
333 334 6.211184 ACCTGATTGAAATTAAGTGGATGCAA 59.789 34.615 0.00 0.00 0.00 4.08
378 381 5.855441 CCATGGATTGGTTGGTCAAGAATTG 60.855 44.000 5.56 0.00 43.77 2.32
386 389 2.102578 CCTTCCATGGATTGGTTGGTC 58.897 52.381 17.06 0.00 46.52 4.02
388 391 2.530460 TCCTTCCATGGATTGGTTGG 57.470 50.000 24.88 16.36 46.52 3.77
389 392 4.888326 TTTTCCTTCCATGGATTGGTTG 57.112 40.909 24.88 9.29 46.52 3.77
467 724 7.424803 CGGGATATTTAAGCATGAAACATTCA 58.575 34.615 0.00 0.00 45.01 2.57
468 725 6.363357 GCGGGATATTTAAGCATGAAACATTC 59.637 38.462 0.00 0.00 0.00 2.67
472 729 4.024387 TCGCGGGATATTTAAGCATGAAAC 60.024 41.667 6.13 0.00 0.00 2.78
492 749 1.466167 TGCTCTTTTGAAGCATCTCGC 59.534 47.619 0.00 0.00 42.91 5.03
553 810 3.128415 CACGGCATATCACACATTTTCCA 59.872 43.478 0.00 0.00 0.00 3.53
569 826 0.390603 CCACGGAACTATTCACGGCA 60.391 55.000 0.00 0.00 0.00 5.69
695 952 1.978580 AGTGAACCGACCTCCATTCTT 59.021 47.619 0.00 0.00 0.00 2.52
704 961 1.080705 CTCGTCCAGTGAACCGACC 60.081 63.158 0.00 0.00 0.00 4.79
762 1019 6.874288 ATGAGCATGGTTCTTTATTAGCTC 57.126 37.500 0.00 0.00 45.40 4.09
775 1032 2.608016 CGCGTGTCTATATGAGCATGGT 60.608 50.000 0.00 0.00 0.00 3.55
777 1034 1.988467 CCGCGTGTCTATATGAGCATG 59.012 52.381 4.92 0.00 0.00 4.06
810 1067 0.682292 TGCATGGTACCGAGTCAACA 59.318 50.000 7.57 0.00 0.00 3.33
849 1109 3.355378 CATCATGTAGCAGTTGGGGAAA 58.645 45.455 0.00 0.00 0.00 3.13
890 1155 0.554305 TGATTCATGGCTGGCTGGAT 59.446 50.000 2.00 0.00 0.00 3.41
904 1169 5.543507 ACTAGAGATGGATGTGGTGATTC 57.456 43.478 0.00 0.00 0.00 2.52
1098 1378 2.841442 AGAACCCGACCTTCAGAAAG 57.159 50.000 0.00 0.00 0.00 2.62
1279 1724 1.757118 ACGGTCAGATCAGGTACATGG 59.243 52.381 7.81 0.00 0.00 3.66
1303 1748 2.490115 ACACGTGTTGAACCACACAAAT 59.510 40.909 17.22 0.00 46.45 2.32
1866 2314 1.375523 GAACTCCCGCGGTGTGATT 60.376 57.895 26.12 10.72 29.35 2.57
2183 2631 9.706846 CATCACATACACAAATAACATACACTG 57.293 33.333 0.00 0.00 0.00 3.66
2313 6381 7.422399 ACATACACAAACAACCAACAATAGAC 58.578 34.615 0.00 0.00 0.00 2.59
2315 6383 7.421599 TGACATACACAAACAACCAACAATAG 58.578 34.615 0.00 0.00 0.00 1.73
2371 6439 6.515272 TCTTTGCTGGGAGAACAATTATTC 57.485 37.500 0.00 0.00 0.00 1.75
2382 6450 7.874528 ACAATTATTCTTTTTCTTTGCTGGGAG 59.125 33.333 0.00 0.00 0.00 4.30
2433 6507 9.595823 GACACTTCTAGCTATGTAAATAAACCA 57.404 33.333 0.00 0.00 0.00 3.67
2452 6526 1.098712 TGGTTTGCGGGTGACACTTC 61.099 55.000 5.39 0.00 0.00 3.01
2464 6538 6.433766 CAAATAGCTAGCTATTCTGGTTTGC 58.566 40.000 37.72 1.71 45.37 3.68
2469 6543 6.373774 CCATTCCAAATAGCTAGCTATTCTGG 59.626 42.308 36.83 36.83 45.37 3.86
2470 6544 6.373774 CCCATTCCAAATAGCTAGCTATTCTG 59.626 42.308 37.72 32.86 45.37 3.02
2471 6545 6.479884 CCCATTCCAAATAGCTAGCTATTCT 58.520 40.000 37.72 27.37 45.37 2.40
2472 6546 5.649831 CCCCATTCCAAATAGCTAGCTATTC 59.350 44.000 37.72 3.39 45.37 1.75
2474 6548 4.568592 GCCCCATTCCAAATAGCTAGCTAT 60.569 45.833 28.08 28.08 40.63 2.97
2475 6549 3.244911 GCCCCATTCCAAATAGCTAGCTA 60.245 47.826 26.09 26.09 0.00 3.32
2476 6550 2.489802 GCCCCATTCCAAATAGCTAGCT 60.490 50.000 23.12 23.12 0.00 3.32
2477 6551 1.889170 GCCCCATTCCAAATAGCTAGC 59.111 52.381 6.62 6.62 0.00 3.42
2478 6552 2.158475 TGGCCCCATTCCAAATAGCTAG 60.158 50.000 0.00 0.00 0.00 3.42
2479 6553 1.856259 TGGCCCCATTCCAAATAGCTA 59.144 47.619 0.00 0.00 0.00 3.32
2480 6554 0.636101 TGGCCCCATTCCAAATAGCT 59.364 50.000 0.00 0.00 0.00 3.32
2481 6555 1.043022 CTGGCCCCATTCCAAATAGC 58.957 55.000 0.00 0.00 32.41 2.97
2482 6556 2.034124 CACTGGCCCCATTCCAAATAG 58.966 52.381 0.00 0.00 32.41 1.73
2483 6557 1.643286 TCACTGGCCCCATTCCAAATA 59.357 47.619 0.00 0.00 32.41 1.40
2484 6558 0.413037 TCACTGGCCCCATTCCAAAT 59.587 50.000 0.00 0.00 32.41 2.32
2485 6559 0.413037 ATCACTGGCCCCATTCCAAA 59.587 50.000 0.00 0.00 32.41 3.28
2486 6560 0.413037 AATCACTGGCCCCATTCCAA 59.587 50.000 0.00 0.00 32.41 3.53
2487 6561 0.324552 CAATCACTGGCCCCATTCCA 60.325 55.000 0.00 0.00 0.00 3.53
2488 6562 1.044790 CCAATCACTGGCCCCATTCC 61.045 60.000 0.00 0.00 38.76 3.01
2489 6563 2.508361 CCAATCACTGGCCCCATTC 58.492 57.895 0.00 0.00 38.76 2.67
2490 6564 4.792066 CCAATCACTGGCCCCATT 57.208 55.556 0.00 0.00 38.76 3.16
2498 6572 5.064707 CGGTATTAGAAACCACCAATCACTG 59.935 44.000 0.00 0.00 36.78 3.66
2499 6573 5.183228 CGGTATTAGAAACCACCAATCACT 58.817 41.667 0.00 0.00 36.78 3.41
2500 6574 4.201881 GCGGTATTAGAAACCACCAATCAC 60.202 45.833 0.00 0.00 36.78 3.06
2501 6575 3.942748 GCGGTATTAGAAACCACCAATCA 59.057 43.478 0.00 0.00 36.78 2.57
2502 6576 3.314357 GGCGGTATTAGAAACCACCAATC 59.686 47.826 0.00 0.00 38.79 2.67
2503 6577 3.053917 AGGCGGTATTAGAAACCACCAAT 60.054 43.478 2.43 0.00 40.98 3.16
2504 6578 2.306512 AGGCGGTATTAGAAACCACCAA 59.693 45.455 2.43 0.00 40.98 3.67
2505 6579 1.910671 AGGCGGTATTAGAAACCACCA 59.089 47.619 2.43 0.00 40.98 4.17
2506 6580 2.681344 CAAGGCGGTATTAGAAACCACC 59.319 50.000 0.00 0.00 39.16 4.61
2507 6581 2.681344 CCAAGGCGGTATTAGAAACCAC 59.319 50.000 0.00 0.00 36.78 4.16
2508 6582 2.993937 CCAAGGCGGTATTAGAAACCA 58.006 47.619 0.00 0.00 36.78 3.67
2520 6594 2.417379 CGATATCCATAGACCAAGGCGG 60.417 54.545 0.00 0.00 42.50 6.13
2521 6595 2.492088 TCGATATCCATAGACCAAGGCG 59.508 50.000 0.00 0.00 0.00 5.52
2522 6596 3.673594 CGTCGATATCCATAGACCAAGGC 60.674 52.174 0.00 0.00 34.34 4.35
2523 6597 3.756963 TCGTCGATATCCATAGACCAAGG 59.243 47.826 0.00 0.00 34.34 3.61
2524 6598 5.372547 TTCGTCGATATCCATAGACCAAG 57.627 43.478 0.00 0.00 34.34 3.61
2525 6599 5.777850 TTTCGTCGATATCCATAGACCAA 57.222 39.130 0.00 0.00 34.34 3.67
2526 6600 5.508489 GGTTTTCGTCGATATCCATAGACCA 60.508 44.000 0.00 0.00 34.34 4.02
2527 6601 4.922103 GGTTTTCGTCGATATCCATAGACC 59.078 45.833 0.00 0.00 34.34 3.85
2528 6602 5.629849 CAGGTTTTCGTCGATATCCATAGAC 59.370 44.000 13.20 0.00 34.47 2.59
2529 6603 5.769367 CAGGTTTTCGTCGATATCCATAGA 58.231 41.667 13.20 0.00 0.00 1.98
2530 6604 4.386049 GCAGGTTTTCGTCGATATCCATAG 59.614 45.833 13.20 5.88 0.00 2.23
2531 6605 4.202172 TGCAGGTTTTCGTCGATATCCATA 60.202 41.667 13.20 0.00 0.00 2.74
2532 6606 3.131396 GCAGGTTTTCGTCGATATCCAT 58.869 45.455 13.20 0.00 0.00 3.41
2533 6607 2.093921 TGCAGGTTTTCGTCGATATCCA 60.094 45.455 13.20 0.00 0.00 3.41
2534 6608 2.284417 GTGCAGGTTTTCGTCGATATCC 59.716 50.000 0.00 0.00 0.00 2.59
2535 6609 3.187700 AGTGCAGGTTTTCGTCGATATC 58.812 45.455 0.00 0.00 0.00 1.63
2536 6610 3.247006 AGTGCAGGTTTTCGTCGATAT 57.753 42.857 0.00 0.00 0.00 1.63
2537 6611 2.736144 AGTGCAGGTTTTCGTCGATA 57.264 45.000 0.00 0.00 0.00 2.92
2538 6612 2.607187 CTAGTGCAGGTTTTCGTCGAT 58.393 47.619 0.00 0.00 0.00 3.59
2539 6613 1.933500 GCTAGTGCAGGTTTTCGTCGA 60.934 52.381 0.00 0.00 39.41 4.20
2540 6614 0.438830 GCTAGTGCAGGTTTTCGTCG 59.561 55.000 0.00 0.00 39.41 5.12
2541 6615 0.438830 CGCTAGTGCAGGTTTTCGTC 59.561 55.000 0.00 0.00 39.64 4.20
2542 6616 0.249741 ACGCTAGTGCAGGTTTTCGT 60.250 50.000 2.40 0.00 39.64 3.85
2543 6617 1.389106 GTACGCTAGTGCAGGTTTTCG 59.611 52.381 2.40 0.00 39.64 3.46
2544 6618 2.666994 GAGTACGCTAGTGCAGGTTTTC 59.333 50.000 2.40 0.00 39.64 2.29
2545 6619 2.036733 TGAGTACGCTAGTGCAGGTTTT 59.963 45.455 2.40 0.00 39.64 2.43
2546 6620 1.616865 TGAGTACGCTAGTGCAGGTTT 59.383 47.619 2.40 0.00 39.64 3.27
2547 6621 1.254026 TGAGTACGCTAGTGCAGGTT 58.746 50.000 2.40 0.00 39.64 3.50
2548 6622 1.135139 CATGAGTACGCTAGTGCAGGT 59.865 52.381 2.40 0.00 39.64 4.00
2549 6623 1.845266 CATGAGTACGCTAGTGCAGG 58.155 55.000 2.40 0.00 39.64 4.85
2550 6624 1.202348 AGCATGAGTACGCTAGTGCAG 60.202 52.381 18.31 0.00 37.53 4.41
2551 6625 0.817654 AGCATGAGTACGCTAGTGCA 59.182 50.000 18.31 0.00 37.53 4.57
2552 6626 2.223502 TGTAGCATGAGTACGCTAGTGC 60.224 50.000 2.40 11.84 41.23 4.40
2553 6627 3.692791 TGTAGCATGAGTACGCTAGTG 57.307 47.619 0.59 0.59 41.23 2.74
2554 6628 4.440250 CCTTTGTAGCATGAGTACGCTAGT 60.440 45.833 0.00 0.00 41.23 2.57
2555 6629 4.045104 CCTTTGTAGCATGAGTACGCTAG 58.955 47.826 0.00 0.00 41.23 3.42
2556 6630 3.737047 GCCTTTGTAGCATGAGTACGCTA 60.737 47.826 0.00 0.00 39.70 4.26
2557 6631 2.893637 CCTTTGTAGCATGAGTACGCT 58.106 47.619 0.00 0.00 42.34 5.07
2558 6632 1.327764 GCCTTTGTAGCATGAGTACGC 59.672 52.381 0.00 0.00 0.00 4.42
2559 6633 1.933853 GGCCTTTGTAGCATGAGTACG 59.066 52.381 0.00 0.00 0.00 3.67
2560 6634 1.933853 CGGCCTTTGTAGCATGAGTAC 59.066 52.381 0.00 0.00 0.00 2.73
2561 6635 1.828595 TCGGCCTTTGTAGCATGAGTA 59.171 47.619 0.00 0.00 0.00 2.59
2562 6636 0.613260 TCGGCCTTTGTAGCATGAGT 59.387 50.000 0.00 0.00 0.00 3.41
2563 6637 1.009829 GTCGGCCTTTGTAGCATGAG 58.990 55.000 0.00 0.00 0.00 2.90
2564 6638 0.392461 GGTCGGCCTTTGTAGCATGA 60.392 55.000 0.00 0.00 0.00 3.07
2565 6639 1.376609 GGGTCGGCCTTTGTAGCATG 61.377 60.000 5.77 0.00 34.45 4.06
2566 6640 1.077716 GGGTCGGCCTTTGTAGCAT 60.078 57.895 5.77 0.00 34.45 3.79
2567 6641 1.847798 ATGGGTCGGCCTTTGTAGCA 61.848 55.000 5.77 0.00 34.45 3.49
2568 6642 0.679960 AATGGGTCGGCCTTTGTAGC 60.680 55.000 5.77 0.00 34.45 3.58
2569 6643 1.379527 GAATGGGTCGGCCTTTGTAG 58.620 55.000 5.77 0.00 34.45 2.74
2570 6644 0.034863 GGAATGGGTCGGCCTTTGTA 60.035 55.000 5.77 0.00 34.45 2.41
2571 6645 1.304134 GGAATGGGTCGGCCTTTGT 60.304 57.895 5.77 0.00 34.45 2.83
2572 6646 2.406616 CGGAATGGGTCGGCCTTTG 61.407 63.158 5.77 0.00 34.45 2.77
2573 6647 2.045340 CGGAATGGGTCGGCCTTT 60.045 61.111 5.77 0.00 34.45 3.11
2574 6648 4.109675 CCGGAATGGGTCGGCCTT 62.110 66.667 5.77 0.00 39.78 4.35
2583 6657 3.361786 ACATAGAAAAACCCCGGAATGG 58.638 45.455 0.73 0.00 37.55 3.16
2584 6658 4.270008 AGACATAGAAAAACCCCGGAATG 58.730 43.478 0.73 0.00 0.00 2.67
2585 6659 4.586306 AGACATAGAAAAACCCCGGAAT 57.414 40.909 0.73 0.00 0.00 3.01
2586 6660 4.376225 AAGACATAGAAAAACCCCGGAA 57.624 40.909 0.73 0.00 0.00 4.30
2587 6661 4.376225 AAAGACATAGAAAAACCCCGGA 57.624 40.909 0.73 0.00 0.00 5.14
2588 6662 5.462530 AAAAAGACATAGAAAAACCCCGG 57.537 39.130 0.00 0.00 0.00 5.73
2589 6663 5.010213 TGGAAAAAGACATAGAAAAACCCCG 59.990 40.000 0.00 0.00 0.00 5.73
2590 6664 6.413783 TGGAAAAAGACATAGAAAAACCCC 57.586 37.500 0.00 0.00 0.00 4.95
2591 6665 5.926542 GCTGGAAAAAGACATAGAAAAACCC 59.073 40.000 0.00 0.00 0.00 4.11
2592 6666 5.926542 GGCTGGAAAAAGACATAGAAAAACC 59.073 40.000 0.00 0.00 0.00 3.27
2593 6667 5.629435 CGGCTGGAAAAAGACATAGAAAAAC 59.371 40.000 0.00 0.00 0.00 2.43
2594 6668 5.300792 ACGGCTGGAAAAAGACATAGAAAAA 59.699 36.000 0.00 0.00 0.00 1.94
2595 6669 4.825085 ACGGCTGGAAAAAGACATAGAAAA 59.175 37.500 0.00 0.00 0.00 2.29
2596 6670 4.394729 ACGGCTGGAAAAAGACATAGAAA 58.605 39.130 0.00 0.00 0.00 2.52
2597 6671 4.015872 ACGGCTGGAAAAAGACATAGAA 57.984 40.909 0.00 0.00 0.00 2.10
2598 6672 3.695830 ACGGCTGGAAAAAGACATAGA 57.304 42.857 0.00 0.00 0.00 1.98
2599 6673 4.003648 AGAACGGCTGGAAAAAGACATAG 58.996 43.478 0.00 0.00 0.00 2.23
2600 6674 4.015872 AGAACGGCTGGAAAAAGACATA 57.984 40.909 0.00 0.00 0.00 2.29
2601 6675 2.863809 AGAACGGCTGGAAAAAGACAT 58.136 42.857 0.00 0.00 0.00 3.06
2602 6676 2.341846 AGAACGGCTGGAAAAAGACA 57.658 45.000 0.00 0.00 0.00 3.41
2603 6677 2.616842 TCAAGAACGGCTGGAAAAAGAC 59.383 45.455 0.00 0.00 0.00 3.01
2604 6678 2.878406 CTCAAGAACGGCTGGAAAAAGA 59.122 45.455 0.00 0.00 0.00 2.52
2605 6679 2.878406 TCTCAAGAACGGCTGGAAAAAG 59.122 45.455 0.00 0.00 0.00 2.27
2606 6680 2.925724 TCTCAAGAACGGCTGGAAAAA 58.074 42.857 0.00 0.00 0.00 1.94
2607 6681 2.631160 TCTCAAGAACGGCTGGAAAA 57.369 45.000 0.00 0.00 0.00 2.29
2608 6682 2.494059 CTTCTCAAGAACGGCTGGAAA 58.506 47.619 0.00 0.00 0.00 3.13
2609 6683 1.270839 CCTTCTCAAGAACGGCTGGAA 60.271 52.381 0.00 0.00 0.00 3.53
2610 6684 0.321671 CCTTCTCAAGAACGGCTGGA 59.678 55.000 0.00 0.00 0.00 3.86
2611 6685 0.035458 ACCTTCTCAAGAACGGCTGG 59.965 55.000 0.00 2.29 0.00 4.85
2612 6686 1.801178 GAACCTTCTCAAGAACGGCTG 59.199 52.381 0.00 0.00 0.00 4.85
2613 6687 1.605712 CGAACCTTCTCAAGAACGGCT 60.606 52.381 7.66 0.00 0.00 5.52
2614 6688 0.790814 CGAACCTTCTCAAGAACGGC 59.209 55.000 7.66 0.00 0.00 5.68
2615 6689 2.030185 TCTCGAACCTTCTCAAGAACGG 60.030 50.000 0.00 6.67 0.00 4.44
2616 6690 3.284323 TCTCGAACCTTCTCAAGAACG 57.716 47.619 0.00 0.00 0.00 3.95
2617 6691 4.975921 GTTCTCGAACCTTCTCAAGAAC 57.024 45.455 0.00 0.00 34.69 3.01
2629 6703 0.974383 TCCTGGGAAGGTTCTCGAAC 59.026 55.000 1.22 1.22 40.45 3.95
2630 6704 0.974383 GTCCTGGGAAGGTTCTCGAA 59.026 55.000 0.00 0.00 0.00 3.71
2631 6705 0.903454 GGTCCTGGGAAGGTTCTCGA 60.903 60.000 0.00 0.00 0.00 4.04
2632 6706 0.905337 AGGTCCTGGGAAGGTTCTCG 60.905 60.000 0.00 0.00 0.00 4.04
2633 6707 1.363246 AAGGTCCTGGGAAGGTTCTC 58.637 55.000 0.00 0.00 0.00 2.87
2634 6708 1.834540 AAAGGTCCTGGGAAGGTTCT 58.165 50.000 0.00 0.00 0.00 3.01
2635 6709 2.677542 AAAAGGTCCTGGGAAGGTTC 57.322 50.000 0.00 0.00 0.00 3.62
2636 6710 2.518407 AGAAAAAGGTCCTGGGAAGGTT 59.482 45.455 0.00 0.00 0.00 3.50
2637 6711 2.144450 AGAAAAAGGTCCTGGGAAGGT 58.856 47.619 0.00 0.00 0.00 3.50
2638 6712 2.158460 ACAGAAAAAGGTCCTGGGAAGG 60.158 50.000 0.00 0.00 32.52 3.46
2639 6713 2.887152 CACAGAAAAAGGTCCTGGGAAG 59.113 50.000 0.00 0.00 33.36 3.46
2640 6714 2.243736 ACACAGAAAAAGGTCCTGGGAA 59.756 45.455 0.00 0.00 35.06 3.97
2641 6715 1.850345 ACACAGAAAAAGGTCCTGGGA 59.150 47.619 0.00 0.00 35.06 4.37
2642 6716 2.364972 ACACAGAAAAAGGTCCTGGG 57.635 50.000 0.00 0.00 37.36 4.45
2643 6717 3.954258 AGAAACACAGAAAAAGGTCCTGG 59.046 43.478 0.00 0.00 32.52 4.45
2644 6718 5.582689 AAGAAACACAGAAAAAGGTCCTG 57.417 39.130 0.00 0.00 0.00 3.86
2645 6719 6.605471 AAAAGAAACACAGAAAAAGGTCCT 57.395 33.333 0.00 0.00 0.00 3.85
2646 6720 7.277098 GGTAAAAAGAAACACAGAAAAAGGTCC 59.723 37.037 0.00 0.00 0.00 4.46
2647 6721 7.815549 TGGTAAAAAGAAACACAGAAAAAGGTC 59.184 33.333 0.00 0.00 0.00 3.85
2648 6722 7.672240 TGGTAAAAAGAAACACAGAAAAAGGT 58.328 30.769 0.00 0.00 0.00 3.50
2649 6723 7.201522 GCTGGTAAAAAGAAACACAGAAAAAGG 60.202 37.037 0.00 0.00 0.00 3.11
2650 6724 7.201522 GGCTGGTAAAAAGAAACACAGAAAAAG 60.202 37.037 0.00 0.00 0.00 2.27
2651 6725 6.592220 GGCTGGTAAAAAGAAACACAGAAAAA 59.408 34.615 0.00 0.00 0.00 1.94
2652 6726 6.071051 AGGCTGGTAAAAAGAAACACAGAAAA 60.071 34.615 0.00 0.00 0.00 2.29
2653 6727 5.420739 AGGCTGGTAAAAAGAAACACAGAAA 59.579 36.000 0.00 0.00 0.00 2.52
2654 6728 4.953579 AGGCTGGTAAAAAGAAACACAGAA 59.046 37.500 0.00 0.00 0.00 3.02
2655 6729 4.532834 AGGCTGGTAAAAAGAAACACAGA 58.467 39.130 0.00 0.00 0.00 3.41
2656 6730 4.918810 AGGCTGGTAAAAAGAAACACAG 57.081 40.909 0.00 0.00 0.00 3.66
2657 6731 5.669164 AAAGGCTGGTAAAAAGAAACACA 57.331 34.783 0.00 0.00 0.00 3.72
2658 6732 8.657074 AATAAAAGGCTGGTAAAAAGAAACAC 57.343 30.769 0.00 0.00 0.00 3.32
2659 6733 7.929245 GGAATAAAAGGCTGGTAAAAAGAAACA 59.071 33.333 0.00 0.00 0.00 2.83
2660 6734 8.148351 AGGAATAAAAGGCTGGTAAAAAGAAAC 58.852 33.333 0.00 0.00 0.00 2.78
2661 6735 8.257602 AGGAATAAAAGGCTGGTAAAAAGAAA 57.742 30.769 0.00 0.00 0.00 2.52
2662 6736 7.849322 AGGAATAAAAGGCTGGTAAAAAGAA 57.151 32.000 0.00 0.00 0.00 2.52
2663 6737 7.849322 AAGGAATAAAAGGCTGGTAAAAAGA 57.151 32.000 0.00 0.00 0.00 2.52
2664 6738 8.902540 AAAAGGAATAAAAGGCTGGTAAAAAG 57.097 30.769 0.00 0.00 0.00 2.27
2665 6739 9.332502 GAAAAAGGAATAAAAGGCTGGTAAAAA 57.667 29.630 0.00 0.00 0.00 1.94
2666 6740 8.710239 AGAAAAAGGAATAAAAGGCTGGTAAAA 58.290 29.630 0.00 0.00 0.00 1.52
2667 6741 8.257602 AGAAAAAGGAATAAAAGGCTGGTAAA 57.742 30.769 0.00 0.00 0.00 2.01
2668 6742 7.849322 AGAAAAAGGAATAAAAGGCTGGTAA 57.151 32.000 0.00 0.00 0.00 2.85
2669 6743 7.849322 AAGAAAAAGGAATAAAAGGCTGGTA 57.151 32.000 0.00 0.00 0.00 3.25
2670 6744 6.747414 AAGAAAAAGGAATAAAAGGCTGGT 57.253 33.333 0.00 0.00 0.00 4.00
2671 6745 8.450578 AAAAAGAAAAAGGAATAAAAGGCTGG 57.549 30.769 0.00 0.00 0.00 4.85
2672 6746 9.330063 AGAAAAAGAAAAAGGAATAAAAGGCTG 57.670 29.630 0.00 0.00 0.00 4.85
2673 6747 9.905713 AAGAAAAAGAAAAAGGAATAAAAGGCT 57.094 25.926 0.00 0.00 0.00 4.58
2773 6847 9.631257 AAAATGTGGAAATGAAAAAGGAAAGAT 57.369 25.926 0.00 0.00 0.00 2.40
2774 6848 9.108284 GAAAATGTGGAAATGAAAAAGGAAAGA 57.892 29.630 0.00 0.00 0.00 2.52
2775 6849 8.891720 TGAAAATGTGGAAATGAAAAAGGAAAG 58.108 29.630 0.00 0.00 0.00 2.62
2776 6850 8.798859 TGAAAATGTGGAAATGAAAAAGGAAA 57.201 26.923 0.00 0.00 0.00 3.13
2777 6851 8.798859 TTGAAAATGTGGAAATGAAAAAGGAA 57.201 26.923 0.00 0.00 0.00 3.36
2778 6852 8.798859 TTTGAAAATGTGGAAATGAAAAAGGA 57.201 26.923 0.00 0.00 0.00 3.36
2796 6870 9.935241 TTCGATAATCATTCCCAAATTTGAAAA 57.065 25.926 19.86 12.72 0.00 2.29
2797 6871 9.585099 CTTCGATAATCATTCCCAAATTTGAAA 57.415 29.630 19.86 13.05 0.00 2.69
2798 6872 8.965819 TCTTCGATAATCATTCCCAAATTTGAA 58.034 29.630 19.86 7.24 0.00 2.69
2799 6873 8.518430 TCTTCGATAATCATTCCCAAATTTGA 57.482 30.769 19.86 0.00 0.00 2.69
2800 6874 9.188588 CATCTTCGATAATCATTCCCAAATTTG 57.811 33.333 11.40 11.40 0.00 2.32
2801 6875 8.362639 CCATCTTCGATAATCATTCCCAAATTT 58.637 33.333 0.00 0.00 0.00 1.82
2802 6876 7.524367 GCCATCTTCGATAATCATTCCCAAATT 60.524 37.037 0.00 0.00 0.00 1.82
2803 6877 6.071728 GCCATCTTCGATAATCATTCCCAAAT 60.072 38.462 0.00 0.00 0.00 2.32
2804 6878 5.241506 GCCATCTTCGATAATCATTCCCAAA 59.758 40.000 0.00 0.00 0.00 3.28
2805 6879 4.761739 GCCATCTTCGATAATCATTCCCAA 59.238 41.667 0.00 0.00 0.00 4.12
2806 6880 4.202451 TGCCATCTTCGATAATCATTCCCA 60.202 41.667 0.00 0.00 0.00 4.37
2807 6881 4.326826 TGCCATCTTCGATAATCATTCCC 58.673 43.478 0.00 0.00 0.00 3.97
2808 6882 5.947228 TTGCCATCTTCGATAATCATTCC 57.053 39.130 0.00 0.00 0.00 3.01
3002 7076 9.921637 GGATTCATAAGTTGTTTACCAATTCAA 57.078 29.630 0.00 0.00 35.02 2.69
3003 7077 9.083422 TGGATTCATAAGTTGTTTACCAATTCA 57.917 29.630 0.00 0.00 35.02 2.57
3084 7158 9.801873 CCCGACTTTTATTAAATGTTCATGAAT 57.198 29.630 12.12 0.00 0.00 2.57
3085 7159 9.015367 TCCCGACTTTTATTAAATGTTCATGAA 57.985 29.630 3.38 3.38 0.00 2.57
3086 7160 8.455682 GTCCCGACTTTTATTAAATGTTCATGA 58.544 33.333 8.56 0.00 0.00 3.07
3087 7161 8.614994 GTCCCGACTTTTATTAAATGTTCATG 57.385 34.615 8.56 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.