Multiple sequence alignment - TraesCS1D01G080100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G080100 chr1D 100.000 3336 0 0 1 3336 62766594 62769929 0.000000e+00 6161
1 TraesCS1D01G080100 chr1D 97.426 272 7 0 3065 3336 62778392 62778663 6.520000e-127 464
2 TraesCS1D01G080100 chr1A 87.793 1917 136 53 659 2499 60807754 60809648 0.000000e+00 2154
3 TraesCS1D01G080100 chr1A 84.488 664 49 24 2 650 60807090 60807714 1.020000e-169 606
4 TraesCS1D01G080100 chr1B 90.357 1317 85 24 1046 2345 100037075 100038366 0.000000e+00 1690
5 TraesCS1D01G080100 chr1B 85.684 475 36 15 484 938 100036465 100036927 3.900000e-129 472
6 TraesCS1D01G080100 chr6D 90.172 580 35 11 2510 3067 48145644 48145065 0.000000e+00 736
7 TraesCS1D01G080100 chr6D 94.505 273 14 1 3065 3336 115289372 115289100 1.430000e-113 420
8 TraesCS1D01G080100 chr6D 94.118 272 16 0 3065 3336 146954683 146954954 6.660000e-112 414
9 TraesCS1D01G080100 chr5A 90.611 458 40 3 2606 3060 395074188 395073731 3.680000e-169 604
10 TraesCS1D01G080100 chr5A 76.338 841 172 21 1386 2216 36020931 36021754 3.080000e-115 425
11 TraesCS1D01G080100 chr5A 75.000 840 178 27 1390 2216 36166423 36167243 3.160000e-95 359
12 TraesCS1D01G080100 chr5A 74.881 840 179 27 1390 2216 36076082 36076902 1.470000e-93 353
13 TraesCS1D01G080100 chr5A 74.762 840 180 27 1390 2216 36049309 36050129 6.850000e-92 348
14 TraesCS1D01G080100 chr5A 74.703 842 177 30 1390 2216 36195456 36196276 3.190000e-90 342
15 TraesCS1D01G080100 chr5A 95.531 179 8 0 2617 2795 7117825 7117647 1.510000e-73 287
16 TraesCS1D01G080100 chr5A 78.307 378 80 2 1390 1766 36104243 36104619 3.330000e-60 243
17 TraesCS1D01G080100 chr5A 77.259 321 71 2 1390 1709 36132772 36133091 1.580000e-43 187
18 TraesCS1D01G080100 chr5A 81.513 119 22 0 1390 1508 36034890 36035008 7.620000e-17 99
19 TraesCS1D01G080100 chr7D 94.505 273 14 1 3065 3336 276391533 276391805 1.430000e-113 420
20 TraesCS1D01G080100 chr5D 94.505 273 14 1 3065 3336 540507053 540507325 1.430000e-113 420
21 TraesCS1D01G080100 chr5D 76.230 833 170 23 1395 2216 45213655 45214470 1.850000e-112 416
22 TraesCS1D01G080100 chr5D 94.118 272 16 0 3065 3336 295391422 295391693 6.660000e-112 414
23 TraesCS1D01G080100 chr5D 93.502 277 16 1 3060 3336 100517252 100517526 8.610000e-111 411
24 TraesCS1D01G080100 chr5B 76.196 836 175 17 1390 2216 45242000 45242820 1.430000e-113 420
25 TraesCS1D01G080100 chr5B 89.408 321 28 6 2604 2921 347669383 347669700 1.860000e-107 399
26 TraesCS1D01G080100 chr5B 98.507 67 1 0 2910 2976 347670903 347670969 5.850000e-23 119
27 TraesCS1D01G080100 chr2D 94.485 272 14 1 3065 3336 51067509 51067239 5.150000e-113 418
28 TraesCS1D01G080100 chr2D 90.643 171 10 4 2822 2990 74328052 74327886 4.330000e-54 222
29 TraesCS1D01G080100 chr4D 93.863 277 16 1 3061 3336 312390015 312389739 1.850000e-112 416
30 TraesCS1D01G080100 chr2B 86.239 327 43 2 2743 3068 539296518 539296843 1.470000e-93 353
31 TraesCS1D01G080100 chr7A 94.091 220 13 0 2846 3065 57798160 57797941 5.330000e-88 335
32 TraesCS1D01G080100 chr2A 91.093 247 20 1 2822 3068 73691433 73691189 1.920000e-87 333
33 TraesCS1D01G080100 chr3B 88.272 162 18 1 2827 2988 3690117 3689957 3.400000e-45 193
34 TraesCS1D01G080100 chr3B 94.186 86 5 0 2982 3067 3688455 3688370 7.510000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G080100 chr1D 62766594 62769929 3335 False 6161 6161 100.0000 1 3336 1 chr1D.!!$F1 3335
1 TraesCS1D01G080100 chr1A 60807090 60809648 2558 False 1380 2154 86.1405 2 2499 2 chr1A.!!$F1 2497
2 TraesCS1D01G080100 chr1B 100036465 100038366 1901 False 1081 1690 88.0205 484 2345 2 chr1B.!!$F1 1861
3 TraesCS1D01G080100 chr6D 48145065 48145644 579 True 736 736 90.1720 2510 3067 1 chr6D.!!$R1 557
4 TraesCS1D01G080100 chr5A 36020931 36021754 823 False 425 425 76.3380 1386 2216 1 chr5A.!!$F1 830
5 TraesCS1D01G080100 chr5A 36166423 36167243 820 False 359 359 75.0000 1390 2216 1 chr5A.!!$F7 826
6 TraesCS1D01G080100 chr5A 36076082 36076902 820 False 353 353 74.8810 1390 2216 1 chr5A.!!$F4 826
7 TraesCS1D01G080100 chr5A 36049309 36050129 820 False 348 348 74.7620 1390 2216 1 chr5A.!!$F3 826
8 TraesCS1D01G080100 chr5A 36195456 36196276 820 False 342 342 74.7030 1390 2216 1 chr5A.!!$F8 826
9 TraesCS1D01G080100 chr5D 45213655 45214470 815 False 416 416 76.2300 1395 2216 1 chr5D.!!$F1 821
10 TraesCS1D01G080100 chr5B 45242000 45242820 820 False 420 420 76.1960 1390 2216 1 chr5B.!!$F1 826
11 TraesCS1D01G080100 chr5B 347669383 347670969 1586 False 259 399 93.9575 2604 2976 2 chr5B.!!$F2 372

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 963 0.798159 CGTCAGTGCATGCAAGCTAA 59.202 50.0 24.58 0.0 34.99 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2767 2985 0.031716 TGGGAGTAGCAGCCTCAGAT 60.032 55.0 1.62 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
268 270 6.709145 TCATGAACATTTGTTTGCATTAGC 57.291 33.333 0.00 0.00 38.56 3.09
270 272 4.615949 TGAACATTTGTTTGCATTAGCGT 58.384 34.783 0.00 0.00 40.35 5.07
404 419 1.148273 TCTGCCCAAGTTCAAGCGT 59.852 52.632 0.00 0.00 0.00 5.07
405 420 1.165907 TCTGCCCAAGTTCAAGCGTG 61.166 55.000 0.00 0.00 0.00 5.34
406 421 2.133742 CTGCCCAAGTTCAAGCGTGG 62.134 60.000 0.00 0.00 37.68 4.94
408 423 3.354678 CCAAGTTCAAGCGTGGGG 58.645 61.111 0.00 0.00 34.97 4.96
409 424 2.268076 CCAAGTTCAAGCGTGGGGG 61.268 63.158 0.00 0.00 34.97 5.40
410 425 1.228124 CAAGTTCAAGCGTGGGGGA 60.228 57.895 0.00 0.00 0.00 4.81
411 426 1.073199 AAGTTCAAGCGTGGGGGAG 59.927 57.895 0.00 0.00 0.00 4.30
412 427 3.056328 GTTCAAGCGTGGGGGAGC 61.056 66.667 0.00 0.00 0.00 4.70
413 428 4.344865 TTCAAGCGTGGGGGAGCC 62.345 66.667 0.00 0.00 0.00 4.70
441 456 3.741476 GCTGCACCTTTCCCAGCG 61.741 66.667 0.00 0.00 41.99 5.18
446 461 1.600636 CACCTTTCCCAGCGAGCAA 60.601 57.895 0.00 0.00 0.00 3.91
470 485 1.459730 GGAATAGGAGCTCCCCCGT 60.460 63.158 29.54 13.43 36.42 5.28
472 487 1.003051 AATAGGAGCTCCCCCGTGT 59.997 57.895 29.54 12.24 36.42 4.49
482 497 2.260869 CCCCCGTGTGTGCTCAAAG 61.261 63.158 0.00 0.00 0.00 2.77
494 509 5.167845 GTGTGCTCAAAGAAAGGAAAAACA 58.832 37.500 0.00 0.00 0.00 2.83
513 528 3.774066 ACAACTGCAAGAAAGCTTTGAC 58.226 40.909 18.30 2.73 37.43 3.18
545 560 2.162319 TTTTTCGGAGGGCATTTTGC 57.838 45.000 0.00 0.00 44.08 3.68
594 611 7.569599 ACTAAGATTTGAGGGAGGAAAACTA 57.430 36.000 0.00 0.00 0.00 2.24
599 616 4.635699 TTGAGGGAGGAAAACTAGGAAC 57.364 45.455 0.00 0.00 0.00 3.62
611 628 1.628846 ACTAGGAACCAGCAAATCCGT 59.371 47.619 0.00 0.00 38.31 4.69
618 635 2.086869 ACCAGCAAATCCGTGAGATTG 58.913 47.619 0.00 0.00 44.75 2.67
621 638 3.689161 CCAGCAAATCCGTGAGATTGTTA 59.311 43.478 0.00 0.00 44.75 2.41
624 641 6.038161 CCAGCAAATCCGTGAGATTGTTAATA 59.962 38.462 0.00 0.00 44.75 0.98
646 688 2.816087 ACAAAACGATGCAAGCTGATCT 59.184 40.909 0.00 0.00 0.00 2.75
647 689 4.002982 ACAAAACGATGCAAGCTGATCTA 58.997 39.130 0.00 0.00 0.00 1.98
648 690 4.637534 ACAAAACGATGCAAGCTGATCTAT 59.362 37.500 0.00 0.00 0.00 1.98
649 691 5.124457 ACAAAACGATGCAAGCTGATCTATT 59.876 36.000 0.00 0.00 0.00 1.73
650 692 4.808077 AACGATGCAAGCTGATCTATTG 57.192 40.909 0.00 0.00 0.00 1.90
651 693 3.801698 ACGATGCAAGCTGATCTATTGT 58.198 40.909 0.00 0.00 0.00 2.71
652 694 3.558829 ACGATGCAAGCTGATCTATTGTG 59.441 43.478 0.00 0.00 0.00 3.33
653 695 3.059120 CGATGCAAGCTGATCTATTGTGG 60.059 47.826 0.00 0.00 0.00 4.17
654 696 2.019249 TGCAAGCTGATCTATTGTGGC 58.981 47.619 0.00 0.00 0.00 5.01
655 697 2.019249 GCAAGCTGATCTATTGTGGCA 58.981 47.619 0.00 0.00 0.00 4.92
656 698 2.424601 GCAAGCTGATCTATTGTGGCAA 59.575 45.455 0.00 0.00 0.00 4.52
746 807 6.155393 AGAGATTAAGCTAAGCTAGTTGTGGT 59.845 38.462 0.00 0.00 38.25 4.16
879 940 2.554142 CAGCAGGATAGACAATTGCGA 58.446 47.619 5.05 0.00 39.63 5.10
881 942 1.599542 GCAGGATAGACAATTGCGACC 59.400 52.381 5.05 2.74 0.00 4.79
883 944 1.480954 AGGATAGACAATTGCGACCGT 59.519 47.619 5.05 0.00 0.00 4.83
884 945 1.859080 GGATAGACAATTGCGACCGTC 59.141 52.381 5.05 0.00 0.00 4.79
900 963 0.798159 CGTCAGTGCATGCAAGCTAA 59.202 50.000 24.58 0.00 34.99 3.09
901 964 1.201998 CGTCAGTGCATGCAAGCTAAG 60.202 52.381 24.58 8.88 34.99 2.18
923 986 1.601197 GCCTAGCGAGATCTCCGGA 60.601 63.158 17.13 2.93 0.00 5.14
945 1008 2.833582 GCCCATGCATGCAGCTCT 60.834 61.111 26.69 6.06 45.94 4.09
974 1068 6.018098 CGTCGTGATGACCTCTATATATACCC 60.018 46.154 0.00 0.00 45.23 3.69
989 1083 2.544844 TACCCCTCGATCTCAACCTT 57.455 50.000 0.00 0.00 0.00 3.50
994 1088 2.417924 CCCTCGATCTCAACCTTCACTG 60.418 54.545 0.00 0.00 0.00 3.66
1000 1094 2.115427 TCTCAACCTTCACTGGACACA 58.885 47.619 0.00 0.00 0.00 3.72
1005 1099 1.299541 CCTTCACTGGACACACACAC 58.700 55.000 0.00 0.00 0.00 3.82
1007 1101 2.564771 CTTCACTGGACACACACACAT 58.435 47.619 0.00 0.00 0.00 3.21
1008 1102 3.494223 CCTTCACTGGACACACACACATA 60.494 47.826 0.00 0.00 0.00 2.29
1009 1103 3.106242 TCACTGGACACACACACATAC 57.894 47.619 0.00 0.00 0.00 2.39
1010 1104 2.432510 TCACTGGACACACACACATACA 59.567 45.455 0.00 0.00 0.00 2.29
1011 1105 3.118592 TCACTGGACACACACACATACAA 60.119 43.478 0.00 0.00 0.00 2.41
1012 1106 3.248363 CACTGGACACACACACATACAAG 59.752 47.826 0.00 0.00 0.00 3.16
1019 1113 4.332543 ACACACACACATACAAGACACAAG 59.667 41.667 0.00 0.00 0.00 3.16
1020 1114 4.332543 CACACACACATACAAGACACAAGT 59.667 41.667 0.00 0.00 0.00 3.16
1032 1145 6.533730 ACAAGACACAAGTATCCATCTTCAA 58.466 36.000 0.00 0.00 0.00 2.69
1035 1148 7.621428 AGACACAAGTATCCATCTTCAATTG 57.379 36.000 0.00 0.00 0.00 2.32
1042 1155 7.516198 AGTATCCATCTTCAATTGGCAATAC 57.484 36.000 14.05 3.28 32.80 1.89
1103 1227 1.748403 GGTGTCTGTCTGCCTGTCA 59.252 57.895 0.00 0.00 0.00 3.58
1190 1317 3.271729 TGTTGCTGACACGGTTAAGAAA 58.728 40.909 0.00 0.00 32.00 2.52
1202 1329 3.506067 CGGTTAAGAAAGAAGTGGCCATT 59.494 43.478 9.72 0.00 0.00 3.16
1291 1423 3.181774 CACGTACGTATAAGCAAGCCATC 59.818 47.826 22.34 0.00 0.00 3.51
1292 1424 2.729882 CGTACGTATAAGCAAGCCATCC 59.270 50.000 7.22 0.00 0.00 3.51
1298 1430 1.131638 TAAGCAAGCCATCCTCCGAT 58.868 50.000 0.00 0.00 0.00 4.18
1301 1433 1.071385 AGCAAGCCATCCTCCGATAAG 59.929 52.381 0.00 0.00 0.00 1.73
1339 1485 6.405619 CGATGACAGATGTATCTATCCATGCT 60.406 42.308 0.00 0.00 34.85 3.79
1340 1486 7.201767 CGATGACAGATGTATCTATCCATGCTA 60.202 40.741 0.00 0.00 34.85 3.49
1343 1489 5.957168 ACAGATGTATCTATCCATGCTAGCT 59.043 40.000 17.23 0.00 34.85 3.32
1344 1490 6.127394 ACAGATGTATCTATCCATGCTAGCTG 60.127 42.308 17.23 11.33 34.85 4.24
1345 1491 4.462508 TGTATCTATCCATGCTAGCTGC 57.537 45.455 17.23 0.00 43.25 5.25
1346 1492 3.196469 TGTATCTATCCATGCTAGCTGCC 59.804 47.826 17.23 0.00 42.00 4.85
1347 1493 2.021262 TCTATCCATGCTAGCTGCCT 57.979 50.000 17.23 4.55 42.00 4.75
1348 1494 1.622312 TCTATCCATGCTAGCTGCCTG 59.378 52.381 17.23 8.07 42.00 4.85
1349 1495 0.035881 TATCCATGCTAGCTGCCTGC 59.964 55.000 17.23 7.40 42.00 4.85
1350 1496 1.991339 ATCCATGCTAGCTGCCTGCA 61.991 55.000 17.23 17.10 45.94 4.41
1351 1497 1.528542 CCATGCTAGCTGCCTGCAT 60.529 57.895 17.23 19.55 46.74 3.96
1352 1498 4.159266 ATGCTAGCTGCCTGCATG 57.841 55.556 22.89 0.00 44.48 4.06
1353 1499 2.194212 ATGCTAGCTGCCTGCATGC 61.194 57.895 22.89 11.82 44.48 4.06
1354 1500 2.827190 GCTAGCTGCCTGCATGCA 60.827 61.111 21.29 21.29 45.94 3.96
1355 1501 3.108343 CTAGCTGCCTGCATGCAC 58.892 61.111 18.46 9.02 45.94 4.57
1356 1502 1.451567 CTAGCTGCCTGCATGCACT 60.452 57.895 18.46 14.55 45.94 4.40
1357 1503 1.001764 TAGCTGCCTGCATGCACTT 60.002 52.632 18.46 6.63 45.94 3.16
1358 1504 1.310216 TAGCTGCCTGCATGCACTTG 61.310 55.000 18.46 7.43 45.94 3.16
1359 1505 2.571757 CTGCCTGCATGCACTTGG 59.428 61.111 18.46 18.10 36.04 3.61
1360 1506 2.203523 TGCCTGCATGCACTTGGT 60.204 55.556 18.46 0.00 36.04 3.67
1361 1507 0.961857 CTGCCTGCATGCACTTGGTA 60.962 55.000 18.46 15.36 36.04 3.25
1362 1508 0.323633 TGCCTGCATGCACTTGGTAT 60.324 50.000 18.46 0.00 36.04 2.73
1363 1509 0.819582 GCCTGCATGCACTTGGTATT 59.180 50.000 18.46 0.00 0.00 1.89
1364 1510 2.023673 GCCTGCATGCACTTGGTATTA 58.976 47.619 18.46 0.00 0.00 0.98
1365 1511 2.426738 GCCTGCATGCACTTGGTATTAA 59.573 45.455 18.46 0.00 0.00 1.40
1379 1525 9.269415 CACTTGGTATTAATTTTGCGTAGTAAC 57.731 33.333 0.00 0.00 0.00 2.50
1429 1582 1.544691 TCGGTGCTCTTAGACAAGACC 59.455 52.381 0.00 0.00 35.82 3.85
1522 1675 2.097038 CAAGGACAAGCTCGGCGAG 61.097 63.158 31.40 31.40 0.00 5.03
1690 1843 0.375454 CCACGTTCAACTTCACGCAA 59.625 50.000 0.00 0.00 40.16 4.85
1840 1993 1.557099 TCAGCGTCAGGTACCAGAAT 58.443 50.000 15.94 0.00 0.00 2.40
1875 2028 1.006571 TTGAGGACAAGACGACGGC 60.007 57.895 0.00 0.00 0.00 5.68
1924 2080 0.460284 ACATCCGCGACATGGAGTTC 60.460 55.000 8.23 0.00 39.30 3.01
2071 2227 4.354212 CTGCGCAACGACACCACG 62.354 66.667 13.05 0.00 39.31 4.94
2113 2269 1.602327 GGGAGTTTAGGGACGACGCT 61.602 60.000 9.60 9.60 41.97 5.07
2117 2273 3.636313 TTTAGGGACGACGCTGCCG 62.636 63.158 14.25 0.00 39.59 5.69
2267 2426 3.057245 ACTCGATCATGTGCAGCGTATAT 60.057 43.478 0.00 0.00 0.00 0.86
2283 2442 7.059488 GCAGCGTATATTAATGGTTTGAATTCG 59.941 37.037 0.04 0.00 0.00 3.34
2315 2477 7.465116 TGTCCTCTACCTAACTTGTACTACTT 58.535 38.462 0.00 0.00 0.00 2.24
2318 2480 6.597280 CCTCTACCTAACTTGTACTACTTCGT 59.403 42.308 0.00 0.00 0.00 3.85
2370 2532 9.573166 TGATTTATAAAAGGATGTGGATAGGTG 57.427 33.333 1.21 0.00 0.00 4.00
2372 2558 8.974060 TTTATAAAAGGATGTGGATAGGTGTC 57.026 34.615 0.00 0.00 0.00 3.67
2376 2562 3.724478 AGGATGTGGATAGGTGTCTCAA 58.276 45.455 0.00 0.00 0.00 3.02
2381 2567 5.089970 TGTGGATAGGTGTCTCAATCAAG 57.910 43.478 0.00 0.00 0.00 3.02
2388 2574 8.153550 GGATAGGTGTCTCAATCAAGTGATATT 58.846 37.037 0.00 0.00 33.73 1.28
2439 2625 8.669243 ACTGAAAAAGAAATCATACGAATCTCC 58.331 33.333 0.00 0.00 0.00 3.71
2443 2629 8.511604 AAAAGAAATCATACGAATCTCCATGT 57.488 30.769 0.00 0.00 0.00 3.21
2453 2639 9.045223 CATACGAATCTCCATGTAAGATCAAAA 57.955 33.333 7.97 0.00 32.29 2.44
2490 2676 4.519350 ACAGAGACATAACGAAGTGTCAGA 59.481 41.667 16.58 0.00 45.00 3.27
2495 2681 6.978338 AGACATAACGAAGTGTCAGAAACTA 58.022 36.000 16.58 0.00 45.00 2.24
2499 2685 7.924412 ACATAACGAAGTGTCAGAAACTAAGAA 59.076 33.333 0.00 0.00 45.00 2.52
2500 2686 8.761497 CATAACGAAGTGTCAGAAACTAAGAAA 58.239 33.333 0.00 0.00 45.00 2.52
2501 2687 6.585389 ACGAAGTGTCAGAAACTAAGAAAC 57.415 37.500 0.00 0.00 42.51 2.78
2502 2688 5.231568 ACGAAGTGTCAGAAACTAAGAAACG 59.768 40.000 0.00 0.00 42.51 3.60
2503 2689 5.332355 CGAAGTGTCAGAAACTAAGAAACGG 60.332 44.000 0.00 0.00 0.00 4.44
2504 2690 4.377897 AGTGTCAGAAACTAAGAAACGGG 58.622 43.478 0.00 0.00 0.00 5.28
2505 2691 4.124970 GTGTCAGAAACTAAGAAACGGGT 58.875 43.478 0.00 0.00 0.00 5.28
2506 2692 4.025145 GTGTCAGAAACTAAGAAACGGGTG 60.025 45.833 0.00 0.00 0.00 4.61
2507 2693 4.141892 TGTCAGAAACTAAGAAACGGGTGA 60.142 41.667 0.00 0.00 0.00 4.02
2508 2694 4.995487 GTCAGAAACTAAGAAACGGGTGAT 59.005 41.667 0.00 0.00 0.00 3.06
2518 2704 1.213296 AACGGGTGATATGGCCTCTT 58.787 50.000 3.32 0.00 0.00 2.85
2531 2717 1.340697 GGCCTCTTCCCAACCGTATTT 60.341 52.381 0.00 0.00 0.00 1.40
2546 2732 8.761497 CCAACCGTATTTATATCACTTGTACAG 58.239 37.037 0.00 0.00 0.00 2.74
2574 2760 2.496899 TGGTTTCTCCATCTTCTGGC 57.503 50.000 0.00 0.00 45.52 4.85
2575 2761 1.704628 TGGTTTCTCCATCTTCTGGCA 59.295 47.619 0.00 0.00 45.52 4.92
2576 2762 2.087646 GGTTTCTCCATCTTCTGGCAC 58.912 52.381 0.00 0.00 45.52 5.01
2577 2763 2.553028 GGTTTCTCCATCTTCTGGCACA 60.553 50.000 0.00 0.00 45.52 4.57
2578 2764 3.350833 GTTTCTCCATCTTCTGGCACAT 58.649 45.455 0.00 0.00 45.52 3.21
2579 2765 3.726557 TTCTCCATCTTCTGGCACATT 57.273 42.857 0.00 0.00 45.52 2.71
2580 2766 3.272574 TCTCCATCTTCTGGCACATTC 57.727 47.619 0.00 0.00 45.52 2.67
2581 2767 2.842496 TCTCCATCTTCTGGCACATTCT 59.158 45.455 0.00 0.00 45.52 2.40
2600 2786 2.022195 CTCAGCCACAAATCAGGGATG 58.978 52.381 0.00 0.00 39.38 3.51
2625 2842 4.391830 GCTCCGTAATGAACTTTCACATGA 59.608 41.667 0.00 0.00 40.49 3.07
2642 2859 7.576861 TCACATGACAAATCTATACCGAGTA 57.423 36.000 0.00 0.00 0.00 2.59
2767 2985 2.027653 TGTGGTGACGAATAATCTGGCA 60.028 45.455 0.00 0.00 0.00 4.92
2786 3004 0.031716 ATCTGAGGCTGCTACTCCCA 60.032 55.000 0.00 0.00 34.06 4.37
2837 3055 1.259142 TTGGGTCGCCTTATCGGTCA 61.259 55.000 0.00 0.00 34.25 4.02
2863 3081 0.535780 CCTATGCCGCACATGATGGT 60.536 55.000 0.00 0.00 40.06 3.55
2985 4417 1.829222 CCAAGCAATGATGGAAAGGCT 59.171 47.619 0.00 0.00 39.12 4.58
3021 4453 5.041287 TGAAAGATCAAGCTTACCGATACG 58.959 41.667 0.00 0.00 30.99 3.06
3032 4464 0.731417 ACCGATACGACTTCAGTCCG 59.269 55.000 1.25 0.00 41.86 4.79
3039 4471 1.710339 GACTTCAGTCCGATTGCGC 59.290 57.895 0.00 0.00 39.07 6.09
3076 4508 1.857965 TCACAGATGAGGGAGTCCTG 58.142 55.000 9.58 0.28 45.05 3.86
3077 4509 0.829333 CACAGATGAGGGAGTCCTGG 59.171 60.000 9.58 0.00 45.05 4.45
3078 4510 0.712979 ACAGATGAGGGAGTCCTGGA 59.287 55.000 9.58 0.00 45.05 3.86
3079 4511 1.118838 CAGATGAGGGAGTCCTGGAC 58.881 60.000 19.20 19.20 45.05 4.02
3080 4512 1.014804 AGATGAGGGAGTCCTGGACT 58.985 55.000 28.70 28.70 46.42 3.85
3081 4513 2.091610 CAGATGAGGGAGTCCTGGACTA 60.092 54.545 28.41 13.71 43.53 2.59
3082 4514 2.587777 AGATGAGGGAGTCCTGGACTAA 59.412 50.000 28.41 12.65 43.53 2.24
3083 4515 2.534042 TGAGGGAGTCCTGGACTAAG 57.466 55.000 28.41 0.00 43.53 2.18
3084 4516 1.007238 TGAGGGAGTCCTGGACTAAGG 59.993 57.143 28.41 0.00 43.53 2.69
3085 4517 0.340208 AGGGAGTCCTGGACTAAGGG 59.660 60.000 28.41 0.00 43.53 3.95
3086 4518 0.691413 GGGAGTCCTGGACTAAGGGG 60.691 65.000 28.41 0.00 43.53 4.79
3087 4519 0.042881 GGAGTCCTGGACTAAGGGGT 59.957 60.000 28.41 5.74 43.53 4.95
3088 4520 1.487300 GAGTCCTGGACTAAGGGGTC 58.513 60.000 28.41 11.40 43.53 4.46
3089 4521 0.790993 AGTCCTGGACTAAGGGGTCA 59.209 55.000 27.37 0.00 41.51 4.02
3090 4522 1.366435 AGTCCTGGACTAAGGGGTCAT 59.634 52.381 27.37 0.00 41.51 3.06
3091 4523 1.763545 GTCCTGGACTAAGGGGTCATC 59.236 57.143 19.53 0.00 37.96 2.92
3092 4524 1.364678 TCCTGGACTAAGGGGTCATCA 59.635 52.381 0.00 0.00 37.96 3.07
3093 4525 1.765314 CCTGGACTAAGGGGTCATCAG 59.235 57.143 0.00 0.00 37.91 2.90
3094 4526 1.765314 CTGGACTAAGGGGTCATCAGG 59.235 57.143 0.00 0.00 37.91 3.86
3095 4527 0.470341 GGACTAAGGGGTCATCAGGC 59.530 60.000 0.00 0.00 37.91 4.85
3096 4528 0.105039 GACTAAGGGGTCATCAGGCG 59.895 60.000 0.00 0.00 36.35 5.52
3097 4529 0.617820 ACTAAGGGGTCATCAGGCGT 60.618 55.000 0.00 0.00 0.00 5.68
3098 4530 0.105039 CTAAGGGGTCATCAGGCGTC 59.895 60.000 0.00 0.00 0.00 5.19
3099 4531 1.335132 TAAGGGGTCATCAGGCGTCC 61.335 60.000 0.00 0.00 0.00 4.79
3100 4532 4.530857 GGGGTCATCAGGCGTCCG 62.531 72.222 0.00 0.00 0.00 4.79
3101 4533 4.530857 GGGTCATCAGGCGTCCGG 62.531 72.222 0.00 0.00 0.00 5.14
3126 4558 4.195334 GCCATGGGCCGGACTGAT 62.195 66.667 15.13 0.00 44.06 2.90
3127 4559 2.203252 CCATGGGCCGGACTGATG 60.203 66.667 7.57 10.25 0.00 3.07
3128 4560 2.203252 CATGGGCCGGACTGATGG 60.203 66.667 7.57 0.00 0.00 3.51
3129 4561 3.492353 ATGGGCCGGACTGATGGG 61.492 66.667 7.57 0.00 0.00 4.00
3132 4564 4.864334 GGCCGGACTGATGGGCTG 62.864 72.222 5.05 0.00 46.62 4.85
3133 4565 4.101448 GCCGGACTGATGGGCTGT 62.101 66.667 5.05 0.00 43.52 4.40
3134 4566 2.124983 CCGGACTGATGGGCTGTG 60.125 66.667 0.00 0.00 0.00 3.66
3135 4567 2.659063 CCGGACTGATGGGCTGTGA 61.659 63.158 0.00 0.00 0.00 3.58
3136 4568 1.296392 CGGACTGATGGGCTGTGAA 59.704 57.895 0.00 0.00 0.00 3.18
3137 4569 0.742281 CGGACTGATGGGCTGTGAAG 60.742 60.000 0.00 0.00 0.00 3.02
3138 4570 0.615331 GGACTGATGGGCTGTGAAGA 59.385 55.000 0.00 0.00 0.00 2.87
3139 4571 1.211457 GGACTGATGGGCTGTGAAGAT 59.789 52.381 0.00 0.00 0.00 2.40
3140 4572 2.435805 GGACTGATGGGCTGTGAAGATA 59.564 50.000 0.00 0.00 0.00 1.98
3141 4573 3.462021 GACTGATGGGCTGTGAAGATAC 58.538 50.000 0.00 0.00 0.00 2.24
3142 4574 2.159043 ACTGATGGGCTGTGAAGATACG 60.159 50.000 0.00 0.00 0.00 3.06
3143 4575 2.101415 CTGATGGGCTGTGAAGATACGA 59.899 50.000 0.00 0.00 0.00 3.43
3144 4576 2.499693 TGATGGGCTGTGAAGATACGAA 59.500 45.455 0.00 0.00 0.00 3.85
3145 4577 2.672961 TGGGCTGTGAAGATACGAAG 57.327 50.000 0.00 0.00 0.00 3.79
3146 4578 2.176045 TGGGCTGTGAAGATACGAAGA 58.824 47.619 0.00 0.00 0.00 2.87
3147 4579 2.094182 TGGGCTGTGAAGATACGAAGAC 60.094 50.000 0.00 0.00 0.00 3.01
3148 4580 2.541556 GGCTGTGAAGATACGAAGACC 58.458 52.381 0.00 0.00 0.00 3.85
3149 4581 2.186076 GCTGTGAAGATACGAAGACCG 58.814 52.381 0.00 0.00 45.44 4.79
3150 4582 2.159421 GCTGTGAAGATACGAAGACCGA 60.159 50.000 0.00 0.00 41.76 4.69
3151 4583 3.672511 GCTGTGAAGATACGAAGACCGAA 60.673 47.826 0.00 0.00 41.76 4.30
3152 4584 4.092771 TGTGAAGATACGAAGACCGAAG 57.907 45.455 0.00 0.00 41.76 3.79
3153 4585 3.754850 TGTGAAGATACGAAGACCGAAGA 59.245 43.478 0.00 0.00 41.76 2.87
3154 4586 4.097012 GTGAAGATACGAAGACCGAAGAC 58.903 47.826 0.00 0.00 41.76 3.01
3155 4587 4.008330 TGAAGATACGAAGACCGAAGACT 58.992 43.478 0.00 0.00 41.76 3.24
3156 4588 4.142665 TGAAGATACGAAGACCGAAGACTG 60.143 45.833 0.00 0.00 41.76 3.51
3157 4589 2.097791 AGATACGAAGACCGAAGACTGC 59.902 50.000 0.00 0.00 41.76 4.40
3158 4590 1.241165 TACGAAGACCGAAGACTGCA 58.759 50.000 0.00 0.00 41.76 4.41
3159 4591 0.318784 ACGAAGACCGAAGACTGCAC 60.319 55.000 0.00 0.00 41.76 4.57
3160 4592 1.009389 CGAAGACCGAAGACTGCACC 61.009 60.000 0.00 0.00 41.76 5.01
3161 4593 0.670854 GAAGACCGAAGACTGCACCC 60.671 60.000 0.00 0.00 0.00 4.61
3162 4594 2.432628 GACCGAAGACTGCACCCG 60.433 66.667 0.00 0.00 0.00 5.28
3163 4595 3.222354 GACCGAAGACTGCACCCGT 62.222 63.158 0.00 0.00 0.00 5.28
3164 4596 2.738521 CCGAAGACTGCACCCGTG 60.739 66.667 0.00 0.00 0.00 4.94
3165 4597 2.029073 CGAAGACTGCACCCGTGT 59.971 61.111 0.00 0.00 0.00 4.49
3166 4598 2.022129 CGAAGACTGCACCCGTGTC 61.022 63.158 0.00 0.00 0.00 3.67
3167 4599 1.668151 GAAGACTGCACCCGTGTCC 60.668 63.158 0.00 0.00 0.00 4.02
3168 4600 3.515316 AAGACTGCACCCGTGTCCG 62.515 63.158 0.00 0.00 0.00 4.79
3185 4617 2.667470 TCCGGATAGGACTCTCTTTGG 58.333 52.381 0.00 0.00 45.98 3.28
3186 4618 1.069358 CCGGATAGGACTCTCTTTGGC 59.931 57.143 0.00 0.00 45.00 4.52
3187 4619 1.269309 CGGATAGGACTCTCTTTGGCG 60.269 57.143 0.00 0.00 0.00 5.69
3188 4620 1.757699 GGATAGGACTCTCTTTGGCGT 59.242 52.381 0.00 0.00 0.00 5.68
3189 4621 2.482142 GGATAGGACTCTCTTTGGCGTG 60.482 54.545 0.00 0.00 0.00 5.34
3190 4622 0.895530 TAGGACTCTCTTTGGCGTGG 59.104 55.000 0.00 0.00 0.00 4.94
3191 4623 0.832135 AGGACTCTCTTTGGCGTGGA 60.832 55.000 0.00 0.00 0.00 4.02
3192 4624 0.034896 GGACTCTCTTTGGCGTGGAA 59.965 55.000 0.00 0.00 0.00 3.53
3193 4625 1.433534 GACTCTCTTTGGCGTGGAAG 58.566 55.000 0.00 0.00 0.00 3.46
3194 4626 0.035458 ACTCTCTTTGGCGTGGAAGG 59.965 55.000 0.00 0.00 0.00 3.46
3211 4643 3.972276 GCAAACTTGGCGGCCGAA 61.972 61.111 33.48 15.01 0.00 4.30
3212 4644 2.961768 CAAACTTGGCGGCCGAAT 59.038 55.556 33.48 5.10 0.00 3.34
3213 4645 1.928706 GCAAACTTGGCGGCCGAATA 61.929 55.000 33.48 11.33 0.00 1.75
3214 4646 0.738389 CAAACTTGGCGGCCGAATAT 59.262 50.000 33.48 6.41 0.00 1.28
3215 4647 0.738389 AAACTTGGCGGCCGAATATG 59.262 50.000 33.48 17.49 0.00 1.78
3216 4648 0.393808 AACTTGGCGGCCGAATATGT 60.394 50.000 33.48 18.15 0.00 2.29
3217 4649 0.466543 ACTTGGCGGCCGAATATGTA 59.533 50.000 33.48 4.78 0.00 2.29
3218 4650 1.148310 CTTGGCGGCCGAATATGTAG 58.852 55.000 33.48 11.24 0.00 2.74
3219 4651 0.753867 TTGGCGGCCGAATATGTAGA 59.246 50.000 33.48 0.00 0.00 2.59
3220 4652 0.973632 TGGCGGCCGAATATGTAGAT 59.026 50.000 33.48 0.00 0.00 1.98
3221 4653 1.346395 TGGCGGCCGAATATGTAGATT 59.654 47.619 33.48 0.00 0.00 2.40
3222 4654 2.000447 GGCGGCCGAATATGTAGATTC 59.000 52.381 33.48 5.54 33.27 2.52
3223 4655 2.000447 GCGGCCGAATATGTAGATTCC 59.000 52.381 33.48 0.62 33.04 3.01
3224 4656 2.353803 GCGGCCGAATATGTAGATTCCT 60.354 50.000 33.48 0.00 33.04 3.36
3225 4657 3.864921 GCGGCCGAATATGTAGATTCCTT 60.865 47.826 33.48 0.00 33.04 3.36
3226 4658 4.315803 CGGCCGAATATGTAGATTCCTTT 58.684 43.478 24.07 0.00 33.04 3.11
3227 4659 4.389077 CGGCCGAATATGTAGATTCCTTTC 59.611 45.833 24.07 0.00 33.04 2.62
3228 4660 5.552178 GGCCGAATATGTAGATTCCTTTCT 58.448 41.667 0.00 0.00 33.04 2.52
3229 4661 5.998363 GGCCGAATATGTAGATTCCTTTCTT 59.002 40.000 0.00 0.00 33.04 2.52
3230 4662 6.486993 GGCCGAATATGTAGATTCCTTTCTTT 59.513 38.462 0.00 0.00 33.04 2.52
3231 4663 7.355778 GCCGAATATGTAGATTCCTTTCTTTG 58.644 38.462 0.00 0.00 33.04 2.77
3232 4664 7.012421 GCCGAATATGTAGATTCCTTTCTTTGT 59.988 37.037 0.00 0.00 33.04 2.83
3233 4665 9.542462 CCGAATATGTAGATTCCTTTCTTTGTA 57.458 33.333 0.00 0.00 33.04 2.41
3237 4669 7.611213 ATGTAGATTCCTTTCTTTGTAACCG 57.389 36.000 0.00 0.00 0.00 4.44
3238 4670 6.761312 TGTAGATTCCTTTCTTTGTAACCGA 58.239 36.000 0.00 0.00 0.00 4.69
3239 4671 7.391620 TGTAGATTCCTTTCTTTGTAACCGAT 58.608 34.615 0.00 0.00 0.00 4.18
3240 4672 6.986904 AGATTCCTTTCTTTGTAACCGATC 57.013 37.500 0.00 0.00 0.00 3.69
3241 4673 6.712276 AGATTCCTTTCTTTGTAACCGATCT 58.288 36.000 0.00 0.00 0.00 2.75
3242 4674 7.168905 AGATTCCTTTCTTTGTAACCGATCTT 58.831 34.615 0.00 0.00 0.00 2.40
3243 4675 6.554334 TTCCTTTCTTTGTAACCGATCTTG 57.446 37.500 0.00 0.00 0.00 3.02
3244 4676 5.617252 TCCTTTCTTTGTAACCGATCTTGT 58.383 37.500 0.00 0.00 0.00 3.16
3245 4677 5.468746 TCCTTTCTTTGTAACCGATCTTGTG 59.531 40.000 0.00 0.00 0.00 3.33
3246 4678 5.238650 CCTTTCTTTGTAACCGATCTTGTGT 59.761 40.000 0.00 0.00 0.00 3.72
3247 4679 6.425721 CCTTTCTTTGTAACCGATCTTGTGTA 59.574 38.462 0.00 0.00 0.00 2.90
3248 4680 7.041644 CCTTTCTTTGTAACCGATCTTGTGTAA 60.042 37.037 0.00 0.00 0.00 2.41
3249 4681 6.774354 TCTTTGTAACCGATCTTGTGTAAC 57.226 37.500 0.00 0.00 37.35 2.50
3250 4682 5.697633 TCTTTGTAACCGATCTTGTGTAACC 59.302 40.000 0.00 0.00 34.36 2.85
3251 4683 3.929094 TGTAACCGATCTTGTGTAACCC 58.071 45.455 0.00 0.00 34.36 4.11
3252 4684 3.579586 TGTAACCGATCTTGTGTAACCCT 59.420 43.478 0.00 0.00 34.36 4.34
3253 4685 4.771577 TGTAACCGATCTTGTGTAACCCTA 59.228 41.667 0.00 0.00 34.36 3.53
3254 4686 4.895668 AACCGATCTTGTGTAACCCTAA 57.104 40.909 0.00 0.00 34.36 2.69
3255 4687 4.895668 ACCGATCTTGTGTAACCCTAAA 57.104 40.909 0.00 0.00 34.36 1.85
3256 4688 5.431179 ACCGATCTTGTGTAACCCTAAAT 57.569 39.130 0.00 0.00 34.36 1.40
3257 4689 5.425630 ACCGATCTTGTGTAACCCTAAATC 58.574 41.667 0.00 0.00 34.36 2.17
3258 4690 4.814771 CCGATCTTGTGTAACCCTAAATCC 59.185 45.833 0.00 0.00 34.36 3.01
3259 4691 5.396436 CCGATCTTGTGTAACCCTAAATCCT 60.396 44.000 0.00 0.00 34.36 3.24
3260 4692 5.753921 CGATCTTGTGTAACCCTAAATCCTC 59.246 44.000 0.00 0.00 34.36 3.71
3261 4693 5.431179 TCTTGTGTAACCCTAAATCCTCC 57.569 43.478 0.00 0.00 34.36 4.30
3262 4694 4.226620 TCTTGTGTAACCCTAAATCCTCCC 59.773 45.833 0.00 0.00 34.36 4.30
3263 4695 2.502538 TGTGTAACCCTAAATCCTCCCG 59.497 50.000 0.00 0.00 34.36 5.14
3264 4696 2.121129 TGTAACCCTAAATCCTCCCGG 58.879 52.381 0.00 0.00 0.00 5.73
3265 4697 2.121948 GTAACCCTAAATCCTCCCGGT 58.878 52.381 0.00 0.00 0.00 5.28
3266 4698 0.916809 AACCCTAAATCCTCCCGGTG 59.083 55.000 0.00 0.00 0.00 4.94
3267 4699 1.148498 CCCTAAATCCTCCCGGTGC 59.852 63.158 0.00 0.00 0.00 5.01
3268 4700 1.345715 CCCTAAATCCTCCCGGTGCT 61.346 60.000 0.00 0.00 0.00 4.40
3269 4701 0.546598 CCTAAATCCTCCCGGTGCTT 59.453 55.000 0.00 0.00 0.00 3.91
3270 4702 1.766496 CCTAAATCCTCCCGGTGCTTA 59.234 52.381 0.00 0.00 0.00 3.09
3271 4703 2.372172 CCTAAATCCTCCCGGTGCTTAT 59.628 50.000 0.00 0.00 0.00 1.73
3272 4704 3.581332 CCTAAATCCTCCCGGTGCTTATA 59.419 47.826 0.00 0.00 0.00 0.98
3273 4705 4.225267 CCTAAATCCTCCCGGTGCTTATAT 59.775 45.833 0.00 0.00 0.00 0.86
3274 4706 5.424252 CCTAAATCCTCCCGGTGCTTATATA 59.576 44.000 0.00 0.00 0.00 0.86
3275 4707 5.836024 AAATCCTCCCGGTGCTTATATAA 57.164 39.130 0.00 0.00 0.00 0.98
3276 4708 5.836024 AATCCTCCCGGTGCTTATATAAA 57.164 39.130 0.00 0.00 0.00 1.40
3277 4709 4.612264 TCCTCCCGGTGCTTATATAAAC 57.388 45.455 0.00 0.00 0.00 2.01
3278 4710 3.325716 TCCTCCCGGTGCTTATATAAACC 59.674 47.826 0.00 6.34 0.00 3.27
3310 4742 3.095912 TCCGGAAAGGACAGATACTCA 57.904 47.619 0.00 0.00 45.98 3.41
3311 4743 3.643237 TCCGGAAAGGACAGATACTCAT 58.357 45.455 0.00 0.00 45.98 2.90
3312 4744 4.800023 TCCGGAAAGGACAGATACTCATA 58.200 43.478 0.00 0.00 45.98 2.15
3313 4745 5.205821 TCCGGAAAGGACAGATACTCATAA 58.794 41.667 0.00 0.00 45.98 1.90
3314 4746 5.068723 TCCGGAAAGGACAGATACTCATAAC 59.931 44.000 0.00 0.00 45.98 1.89
3315 4747 5.290386 CGGAAAGGACAGATACTCATAACC 58.710 45.833 0.00 0.00 0.00 2.85
3316 4748 5.163447 CGGAAAGGACAGATACTCATAACCA 60.163 44.000 0.00 0.00 0.00 3.67
3317 4749 6.463049 CGGAAAGGACAGATACTCATAACCAT 60.463 42.308 0.00 0.00 0.00 3.55
3318 4750 7.255836 CGGAAAGGACAGATACTCATAACCATA 60.256 40.741 0.00 0.00 0.00 2.74
3319 4751 8.091449 GGAAAGGACAGATACTCATAACCATAG 58.909 40.741 0.00 0.00 0.00 2.23
3320 4752 8.554490 AAAGGACAGATACTCATAACCATAGT 57.446 34.615 0.00 0.00 0.00 2.12
3321 4753 7.768807 AGGACAGATACTCATAACCATAGTC 57.231 40.000 0.00 0.00 0.00 2.59
3322 4754 7.298374 AGGACAGATACTCATAACCATAGTCA 58.702 38.462 0.00 0.00 0.00 3.41
3323 4755 7.231722 AGGACAGATACTCATAACCATAGTCAC 59.768 40.741 0.00 0.00 0.00 3.67
3324 4756 7.014326 GGACAGATACTCATAACCATAGTCACA 59.986 40.741 0.00 0.00 0.00 3.58
3325 4757 7.717568 ACAGATACTCATAACCATAGTCACAC 58.282 38.462 0.00 0.00 0.00 3.82
3326 4758 7.342026 ACAGATACTCATAACCATAGTCACACA 59.658 37.037 0.00 0.00 0.00 3.72
3327 4759 7.864882 CAGATACTCATAACCATAGTCACACAG 59.135 40.741 0.00 0.00 0.00 3.66
3328 4760 5.344743 ACTCATAACCATAGTCACACAGG 57.655 43.478 0.00 0.00 0.00 4.00
3329 4761 4.122776 CTCATAACCATAGTCACACAGGC 58.877 47.826 0.00 0.00 0.00 4.85
3330 4762 3.774766 TCATAACCATAGTCACACAGGCT 59.225 43.478 0.00 0.00 35.44 4.58
3331 4763 4.959839 TCATAACCATAGTCACACAGGCTA 59.040 41.667 0.00 0.00 39.11 3.93
3332 4764 3.895232 AACCATAGTCACACAGGCTAG 57.105 47.619 0.00 0.00 37.96 3.42
3333 4765 3.101643 ACCATAGTCACACAGGCTAGA 57.898 47.619 0.00 0.00 37.96 2.43
3334 4766 2.761208 ACCATAGTCACACAGGCTAGAC 59.239 50.000 0.00 0.00 37.96 2.59
3335 4767 3.027412 CCATAGTCACACAGGCTAGACT 58.973 50.000 13.25 13.25 37.96 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 228 9.070179 TGTTCATGAATTCAGATTCTTTTCTCA 57.930 29.630 12.12 0.00 41.80 3.27
236 237 8.500773 GCAAACAAATGTTCATGAATTCAGATT 58.499 29.630 12.12 3.25 37.25 2.40
347 357 4.220602 GGCTCCCTTGCTTCTTTTCATTTA 59.779 41.667 0.00 0.00 0.00 1.40
422 437 3.741476 CTGGGAAAGGTGCAGCGC 61.741 66.667 10.78 0.00 0.00 5.92
423 438 3.741476 GCTGGGAAAGGTGCAGCG 61.741 66.667 10.78 0.00 0.00 5.18
424 439 3.741476 CGCTGGGAAAGGTGCAGC 61.741 66.667 8.11 8.11 35.73 5.25
441 456 2.621000 CTATTCCGCGCGTTGCTC 59.379 61.111 29.95 0.00 43.27 4.26
446 461 3.486252 GAGCTCCTATTCCGCGCGT 62.486 63.158 29.95 13.36 0.00 6.01
470 485 5.167845 GTTTTTCCTTTCTTTGAGCACACA 58.832 37.500 0.00 0.00 0.00 3.72
472 487 5.398603 TGTTTTTCCTTTCTTTGAGCACA 57.601 34.783 0.00 0.00 0.00 4.57
482 497 6.673076 GCTTTCTTGCAGTTGTTTTTCCTTTC 60.673 38.462 0.00 0.00 0.00 2.62
494 509 5.835113 TTAGTCAAAGCTTTCTTGCAGTT 57.165 34.783 9.23 0.00 34.99 3.16
513 528 7.978975 TGCCCTCCGAAAAATATTCAATTTTAG 59.021 33.333 0.00 0.00 31.67 1.85
545 560 4.843147 TCTGAATTGCACGTTACTTGTTG 58.157 39.130 0.00 0.00 0.00 3.33
549 564 8.542497 TTAGTAATCTGAATTGCACGTTACTT 57.458 30.769 0.00 0.00 34.09 2.24
594 611 0.400213 TCACGGATTTGCTGGTTCCT 59.600 50.000 0.00 0.00 0.00 3.36
599 616 2.086869 ACAATCTCACGGATTTGCTGG 58.913 47.619 0.00 0.00 42.20 4.85
618 635 6.580791 TCAGCTTGCATCGTTTTGTTATTAAC 59.419 34.615 0.00 0.00 0.00 2.01
621 638 5.119931 TCAGCTTGCATCGTTTTGTTATT 57.880 34.783 0.00 0.00 0.00 1.40
624 641 3.254166 AGATCAGCTTGCATCGTTTTGTT 59.746 39.130 0.00 0.00 0.00 2.83
846 907 1.082300 CTGCTGCTGCTTGTCGTTG 60.082 57.895 17.00 0.00 40.48 4.10
879 940 2.620112 GCTTGCATGCACTGACGGT 61.620 57.895 22.58 0.00 0.00 4.83
881 942 0.798159 TTAGCTTGCATGCACTGACG 59.202 50.000 22.58 7.77 34.99 4.35
883 944 1.003464 TCCTTAGCTTGCATGCACTGA 59.997 47.619 22.58 11.17 34.99 3.41
884 945 1.456296 TCCTTAGCTTGCATGCACTG 58.544 50.000 22.58 17.25 34.99 3.66
900 963 1.616159 GAGATCTCGCTAGGCTTCCT 58.384 55.000 7.04 0.00 37.71 3.36
901 964 0.601057 GGAGATCTCGCTAGGCTTCC 59.399 60.000 16.46 0.00 0.00 3.46
908 971 1.961791 CGCTCCGGAGATCTCGCTA 60.962 63.158 35.69 3.27 0.00 4.26
938 1001 0.734253 ATCACGACGAACAGAGCTGC 60.734 55.000 0.00 0.00 0.00 5.25
941 1004 0.985549 GTCATCACGACGAACAGAGC 59.014 55.000 0.00 0.00 34.19 4.09
942 1005 1.200252 AGGTCATCACGACGAACAGAG 59.800 52.381 0.00 0.00 46.42 3.35
943 1006 1.199327 GAGGTCATCACGACGAACAGA 59.801 52.381 0.00 0.00 46.42 3.41
945 1008 1.244816 AGAGGTCATCACGACGAACA 58.755 50.000 0.00 0.00 46.42 3.18
974 1068 2.417924 CCAGTGAAGGTTGAGATCGAGG 60.418 54.545 0.00 0.00 0.00 4.63
989 1083 2.432510 TGTATGTGTGTGTGTCCAGTGA 59.567 45.455 0.00 0.00 0.00 3.41
994 1088 3.247648 GTGTCTTGTATGTGTGTGTGTCC 59.752 47.826 0.00 0.00 0.00 4.02
1000 1094 5.932303 GGATACTTGTGTCTTGTATGTGTGT 59.068 40.000 0.00 0.00 0.00 3.72
1005 1099 7.765819 TGAAGATGGATACTTGTGTCTTGTATG 59.234 37.037 0.00 0.00 37.61 2.39
1007 1101 7.239763 TGAAGATGGATACTTGTGTCTTGTA 57.760 36.000 0.00 0.00 37.61 2.41
1008 1102 6.114187 TGAAGATGGATACTTGTGTCTTGT 57.886 37.500 0.00 0.00 37.61 3.16
1009 1103 7.621428 ATTGAAGATGGATACTTGTGTCTTG 57.379 36.000 0.00 0.00 37.61 3.02
1010 1104 7.121759 CCAATTGAAGATGGATACTTGTGTCTT 59.878 37.037 7.12 0.00 39.12 3.01
1011 1105 6.600822 CCAATTGAAGATGGATACTTGTGTCT 59.399 38.462 7.12 0.00 39.12 3.41
1012 1106 6.678900 GCCAATTGAAGATGGATACTTGTGTC 60.679 42.308 7.12 0.00 39.12 3.67
1019 1113 6.294731 GGGTATTGCCAATTGAAGATGGATAC 60.295 42.308 7.12 5.53 39.12 2.24
1020 1114 5.774690 GGGTATTGCCAATTGAAGATGGATA 59.225 40.000 7.12 0.00 39.12 2.59
1032 1145 2.785269 TCTGGAGATGGGTATTGCCAAT 59.215 45.455 0.00 0.00 39.65 3.16
1035 1148 2.787994 CATCTGGAGATGGGTATTGCC 58.212 52.381 8.55 0.00 46.09 4.52
1080 1204 2.355837 GCAGACAGACACCGCGAA 60.356 61.111 8.23 0.00 0.00 4.70
1103 1227 2.567049 CCGACGAAGAAGGCGAGT 59.433 61.111 0.00 0.00 0.00 4.18
1202 1329 0.316841 GCGGGTTTTTCTTCATGGCA 59.683 50.000 0.00 0.00 0.00 4.92
1291 1423 1.334869 GGCATGCAAACTTATCGGAGG 59.665 52.381 21.36 0.00 0.00 4.30
1292 1424 1.003545 CGGCATGCAAACTTATCGGAG 60.004 52.381 21.36 0.00 0.00 4.63
1298 1430 1.396648 CATCGACGGCATGCAAACTTA 59.603 47.619 21.36 0.00 0.00 2.24
1301 1433 0.521242 GTCATCGACGGCATGCAAAC 60.521 55.000 21.36 8.52 0.00 2.93
1339 1485 1.001764 AAGTGCATGCAGGCAGCTA 60.002 52.632 28.57 0.44 45.96 3.32
1340 1486 2.282958 AAGTGCATGCAGGCAGCT 60.283 55.556 28.57 22.38 45.96 4.24
1343 1489 0.323633 ATACCAAGTGCATGCAGGCA 60.324 50.000 24.07 24.07 42.53 4.75
1344 1490 0.819582 AATACCAAGTGCATGCAGGC 59.180 50.000 23.41 18.05 0.00 4.85
1345 1491 4.924305 ATTAATACCAAGTGCATGCAGG 57.076 40.909 23.41 21.33 0.00 4.85
1346 1492 6.455913 GCAAAATTAATACCAAGTGCATGCAG 60.456 38.462 23.41 12.18 0.00 4.41
1347 1493 5.350914 GCAAAATTAATACCAAGTGCATGCA 59.649 36.000 18.46 18.46 0.00 3.96
1348 1494 5.500610 CGCAAAATTAATACCAAGTGCATGC 60.501 40.000 11.82 11.82 0.00 4.06
1349 1495 5.576384 ACGCAAAATTAATACCAAGTGCATG 59.424 36.000 0.00 0.00 0.00 4.06
1350 1496 5.719173 ACGCAAAATTAATACCAAGTGCAT 58.281 33.333 0.00 0.00 0.00 3.96
1351 1497 5.127693 ACGCAAAATTAATACCAAGTGCA 57.872 34.783 0.00 0.00 0.00 4.57
1352 1498 6.319399 ACTACGCAAAATTAATACCAAGTGC 58.681 36.000 0.00 0.00 0.00 4.40
1353 1499 9.269415 GTTACTACGCAAAATTAATACCAAGTG 57.731 33.333 0.00 0.00 0.00 3.16
1354 1500 9.001542 TGTTACTACGCAAAATTAATACCAAGT 57.998 29.630 0.00 0.00 0.00 3.16
1355 1501 9.828852 TTGTTACTACGCAAAATTAATACCAAG 57.171 29.630 0.00 0.00 0.00 3.61
1362 1508 9.900710 ACATCATTTGTTACTACGCAAAATTAA 57.099 25.926 0.00 0.00 37.98 1.40
1364 1510 9.337091 GTACATCATTTGTTACTACGCAAAATT 57.663 29.630 0.00 0.00 39.87 1.82
1365 1511 7.690637 CGTACATCATTTGTTACTACGCAAAAT 59.309 33.333 0.00 0.00 39.87 1.82
1379 1525 1.202177 GCCCTGCACGTACATCATTTG 60.202 52.381 0.00 0.00 0.00 2.32
1669 1822 0.232303 GCGTGAAGTTGAACGTGGAG 59.768 55.000 8.89 0.00 41.76 3.86
1690 1843 4.065110 GCGAAGTTGGCCTTGAGT 57.935 55.556 3.32 0.00 32.03 3.41
1899 2055 0.795698 CATGTCGCGGATGTTGTTCA 59.204 50.000 6.13 0.00 0.00 3.18
2117 2273 0.529119 CCGAATAGCACGTACCACCC 60.529 60.000 0.00 0.00 0.00 4.61
2118 2274 1.149964 GCCGAATAGCACGTACCACC 61.150 60.000 0.00 0.00 0.00 4.61
2126 2282 3.111038 GGCCTTGCCGAATAGCAC 58.889 61.111 0.00 0.00 43.97 4.40
2240 2399 2.160219 GCTGCACATGATCGAGTTTTGA 59.840 45.455 0.00 0.00 0.00 2.69
2267 2426 8.934507 ACAAACTTTCGAATTCAAACCATTAA 57.065 26.923 6.22 0.00 0.00 1.40
2283 2442 6.990939 ACAAGTTAGGTAGAGGACAAACTTTC 59.009 38.462 0.00 0.00 40.82 2.62
2315 2477 6.243811 AGTTTTATTTGCGGTGAATAACGA 57.756 33.333 0.00 0.00 30.86 3.85
2364 2526 8.489489 ACAATATCACTTGATTGAGACACCTAT 58.511 33.333 0.00 0.00 36.69 2.57
2414 2600 8.668353 TGGAGATTCGTATGATTTCTTTTTCAG 58.332 33.333 0.83 0.00 0.00 3.02
2415 2601 8.560355 TGGAGATTCGTATGATTTCTTTTTCA 57.440 30.769 0.83 0.00 0.00 2.69
2416 2602 9.443283 CATGGAGATTCGTATGATTTCTTTTTC 57.557 33.333 0.83 0.00 0.00 2.29
2418 2604 8.511604 ACATGGAGATTCGTATGATTTCTTTT 57.488 30.769 0.00 0.00 0.00 2.27
2419 2605 9.613428 TTACATGGAGATTCGTATGATTTCTTT 57.387 29.630 0.00 0.00 0.00 2.52
2420 2606 9.265901 CTTACATGGAGATTCGTATGATTTCTT 57.734 33.333 0.00 0.00 0.00 2.52
2421 2607 8.642432 TCTTACATGGAGATTCGTATGATTTCT 58.358 33.333 0.00 0.00 0.00 2.52
2422 2608 8.818141 TCTTACATGGAGATTCGTATGATTTC 57.182 34.615 0.00 0.00 0.00 2.17
2423 2609 9.429359 GATCTTACATGGAGATTCGTATGATTT 57.571 33.333 13.17 0.00 34.13 2.17
2424 2610 8.588472 TGATCTTACATGGAGATTCGTATGATT 58.412 33.333 13.17 0.00 34.13 2.57
2425 2611 8.127150 TGATCTTACATGGAGATTCGTATGAT 57.873 34.615 13.17 0.00 34.13 2.45
2426 2612 7.524717 TGATCTTACATGGAGATTCGTATGA 57.475 36.000 13.17 0.00 34.13 2.15
2427 2613 8.593492 TTTGATCTTACATGGAGATTCGTATG 57.407 34.615 13.17 0.00 34.13 2.39
2461 2647 4.627467 ACTTCGTTATGTCTCTGTTGATGC 59.373 41.667 0.00 0.00 0.00 3.91
2468 2654 5.048153 TCTGACACTTCGTTATGTCTCTG 57.952 43.478 13.88 7.12 44.59 3.35
2469 2655 5.707242 TTCTGACACTTCGTTATGTCTCT 57.293 39.130 13.88 0.00 44.59 3.10
2473 2659 7.431249 TCTTAGTTTCTGACACTTCGTTATGT 58.569 34.615 1.29 0.00 0.00 2.29
2490 2676 4.638865 GCCATATCACCCGTTTCTTAGTTT 59.361 41.667 0.00 0.00 0.00 2.66
2495 2681 1.564348 AGGCCATATCACCCGTTTCTT 59.436 47.619 5.01 0.00 0.00 2.52
2499 2685 1.141053 GAAGAGGCCATATCACCCGTT 59.859 52.381 5.01 0.00 0.00 4.44
2500 2686 0.759346 GAAGAGGCCATATCACCCGT 59.241 55.000 5.01 0.00 0.00 5.28
2501 2687 0.035458 GGAAGAGGCCATATCACCCG 59.965 60.000 5.01 0.00 0.00 5.28
2502 2688 0.402121 GGGAAGAGGCCATATCACCC 59.598 60.000 5.01 7.71 0.00 4.61
2503 2689 1.140312 TGGGAAGAGGCCATATCACC 58.860 55.000 5.01 0.00 0.00 4.02
2504 2690 2.576615 GTTGGGAAGAGGCCATATCAC 58.423 52.381 5.01 0.42 0.00 3.06
2505 2691 1.494721 GGTTGGGAAGAGGCCATATCA 59.505 52.381 5.01 0.00 0.00 2.15
2506 2692 1.543429 CGGTTGGGAAGAGGCCATATC 60.543 57.143 5.01 0.00 0.00 1.63
2507 2693 0.474184 CGGTTGGGAAGAGGCCATAT 59.526 55.000 5.01 0.00 0.00 1.78
2508 2694 0.912487 ACGGTTGGGAAGAGGCCATA 60.912 55.000 5.01 0.00 0.00 2.74
2518 2704 6.891388 ACAAGTGATATAAATACGGTTGGGA 58.109 36.000 0.00 0.00 0.00 4.37
2531 2717 8.638873 CCATTAGTCACCTGTACAAGTGATATA 58.361 37.037 25.88 19.27 44.34 0.86
2567 2753 1.093159 GGCTGAGAATGTGCCAGAAG 58.907 55.000 0.00 0.00 45.46 2.85
2574 2760 3.119602 CCTGATTTGTGGCTGAGAATGTG 60.120 47.826 0.00 0.00 0.00 3.21
2575 2761 3.087031 CCTGATTTGTGGCTGAGAATGT 58.913 45.455 0.00 0.00 0.00 2.71
2576 2762 2.426024 CCCTGATTTGTGGCTGAGAATG 59.574 50.000 0.00 0.00 0.00 2.67
2577 2763 2.309755 TCCCTGATTTGTGGCTGAGAAT 59.690 45.455 0.00 0.00 0.00 2.40
2578 2764 1.704628 TCCCTGATTTGTGGCTGAGAA 59.295 47.619 0.00 0.00 0.00 2.87
2579 2765 1.361204 TCCCTGATTTGTGGCTGAGA 58.639 50.000 0.00 0.00 0.00 3.27
2580 2766 2.022195 CATCCCTGATTTGTGGCTGAG 58.978 52.381 0.00 0.00 0.00 3.35
2581 2767 1.355381 ACATCCCTGATTTGTGGCTGA 59.645 47.619 0.00 0.00 0.00 4.26
2600 2786 3.496884 TGTGAAAGTTCATTACGGAGCAC 59.503 43.478 0.00 0.00 39.73 4.40
2625 2842 9.702253 ATATCTCCATACTCGGTATAGATTTGT 57.298 33.333 11.37 0.00 30.88 2.83
2642 2859 6.598503 TCACAAAAGAGCATGATATCTCCAT 58.401 36.000 3.98 0.00 0.00 3.41
2767 2985 0.031716 TGGGAGTAGCAGCCTCAGAT 60.032 55.000 1.62 0.00 0.00 2.90
2786 3004 1.816224 GTTCGGCCATGGTATGTTTGT 59.184 47.619 14.67 0.00 0.00 2.83
2837 3055 0.034574 TGTGCGGCATAGGAACCATT 60.035 50.000 5.72 0.00 0.00 3.16
2863 3081 0.913934 TCATCCCTGTGCCAGCCTTA 60.914 55.000 0.00 0.00 0.00 2.69
2985 4417 3.072915 TGATCTTTCAAGTGCCAAGGAGA 59.927 43.478 0.00 0.00 0.00 3.71
3021 4453 1.014044 TGCGCAATCGGACTGAAGTC 61.014 55.000 8.16 1.63 44.04 3.01
3061 4493 1.014804 AGTCCAGGACTCCCTCATCT 58.985 55.000 17.31 0.00 38.71 2.90
3067 4499 0.691413 CCCCTTAGTCCAGGACTCCC 60.691 65.000 26.42 0.00 42.40 4.30
3068 4500 0.042881 ACCCCTTAGTCCAGGACTCC 59.957 60.000 26.42 0.00 42.40 3.85
3069 4501 1.273098 TGACCCCTTAGTCCAGGACTC 60.273 57.143 26.42 10.43 42.40 3.36
3070 4502 0.790993 TGACCCCTTAGTCCAGGACT 59.209 55.000 25.92 25.92 45.54 3.85
3071 4503 1.763545 GATGACCCCTTAGTCCAGGAC 59.236 57.143 12.25 12.25 35.71 3.85
3072 4504 1.364678 TGATGACCCCTTAGTCCAGGA 59.635 52.381 0.00 0.00 35.71 3.86
3073 4505 1.765314 CTGATGACCCCTTAGTCCAGG 59.235 57.143 0.00 0.00 35.83 4.45
3074 4506 1.765314 CCTGATGACCCCTTAGTCCAG 59.235 57.143 0.00 0.00 35.83 3.86
3075 4507 1.879575 CCTGATGACCCCTTAGTCCA 58.120 55.000 0.00 0.00 35.83 4.02
3076 4508 0.470341 GCCTGATGACCCCTTAGTCC 59.530 60.000 0.00 0.00 35.83 3.85
3077 4509 0.105039 CGCCTGATGACCCCTTAGTC 59.895 60.000 0.00 0.00 37.28 2.59
3078 4510 0.617820 ACGCCTGATGACCCCTTAGT 60.618 55.000 0.00 0.00 0.00 2.24
3079 4511 0.105039 GACGCCTGATGACCCCTTAG 59.895 60.000 0.00 0.00 0.00 2.18
3080 4512 1.335132 GGACGCCTGATGACCCCTTA 61.335 60.000 0.00 0.00 0.00 2.69
3081 4513 2.670148 GGACGCCTGATGACCCCTT 61.670 63.158 0.00 0.00 0.00 3.95
3082 4514 3.083997 GGACGCCTGATGACCCCT 61.084 66.667 0.00 0.00 0.00 4.79
3083 4515 4.530857 CGGACGCCTGATGACCCC 62.531 72.222 0.00 0.00 0.00 4.95
3084 4516 4.530857 CCGGACGCCTGATGACCC 62.531 72.222 0.00 0.00 0.00 4.46
3110 4542 2.203252 CATCAGTCCGGCCCATGG 60.203 66.667 4.14 4.14 0.00 3.66
3111 4543 2.203252 CCATCAGTCCGGCCCATG 60.203 66.667 0.00 0.00 0.00 3.66
3112 4544 3.492353 CCCATCAGTCCGGCCCAT 61.492 66.667 0.00 0.00 0.00 4.00
3115 4547 4.864334 CAGCCCATCAGTCCGGCC 62.864 72.222 0.00 0.00 44.13 6.13
3116 4548 4.101448 ACAGCCCATCAGTCCGGC 62.101 66.667 0.00 0.00 43.35 6.13
3117 4549 2.124983 CACAGCCCATCAGTCCGG 60.125 66.667 0.00 0.00 0.00 5.14
3118 4550 0.742281 CTTCACAGCCCATCAGTCCG 60.742 60.000 0.00 0.00 0.00 4.79
3119 4551 0.615331 TCTTCACAGCCCATCAGTCC 59.385 55.000 0.00 0.00 0.00 3.85
3120 4552 2.706339 ATCTTCACAGCCCATCAGTC 57.294 50.000 0.00 0.00 0.00 3.51
3121 4553 2.159043 CGTATCTTCACAGCCCATCAGT 60.159 50.000 0.00 0.00 0.00 3.41
3122 4554 2.101415 TCGTATCTTCACAGCCCATCAG 59.899 50.000 0.00 0.00 0.00 2.90
3123 4555 2.107366 TCGTATCTTCACAGCCCATCA 58.893 47.619 0.00 0.00 0.00 3.07
3124 4556 2.890808 TCGTATCTTCACAGCCCATC 57.109 50.000 0.00 0.00 0.00 3.51
3125 4557 2.766263 TCTTCGTATCTTCACAGCCCAT 59.234 45.455 0.00 0.00 0.00 4.00
3126 4558 2.094182 GTCTTCGTATCTTCACAGCCCA 60.094 50.000 0.00 0.00 0.00 5.36
3127 4559 2.541556 GTCTTCGTATCTTCACAGCCC 58.458 52.381 0.00 0.00 0.00 5.19
3128 4560 2.541556 GGTCTTCGTATCTTCACAGCC 58.458 52.381 0.00 0.00 0.00 4.85
3129 4561 2.159421 TCGGTCTTCGTATCTTCACAGC 60.159 50.000 0.00 0.00 40.32 4.40
3130 4562 3.759527 TCGGTCTTCGTATCTTCACAG 57.240 47.619 0.00 0.00 40.32 3.66
3131 4563 3.754850 TCTTCGGTCTTCGTATCTTCACA 59.245 43.478 0.00 0.00 40.32 3.58
3132 4564 4.097012 GTCTTCGGTCTTCGTATCTTCAC 58.903 47.826 0.00 0.00 40.32 3.18
3133 4565 4.008330 AGTCTTCGGTCTTCGTATCTTCA 58.992 43.478 0.00 0.00 40.32 3.02
3134 4566 4.344448 CAGTCTTCGGTCTTCGTATCTTC 58.656 47.826 0.00 0.00 40.32 2.87
3135 4567 3.427773 GCAGTCTTCGGTCTTCGTATCTT 60.428 47.826 0.00 0.00 40.32 2.40
3136 4568 2.097791 GCAGTCTTCGGTCTTCGTATCT 59.902 50.000 0.00 0.00 40.32 1.98
3137 4569 2.159421 TGCAGTCTTCGGTCTTCGTATC 60.159 50.000 0.00 0.00 40.32 2.24
3138 4570 1.816835 TGCAGTCTTCGGTCTTCGTAT 59.183 47.619 0.00 0.00 40.32 3.06
3139 4571 1.068748 GTGCAGTCTTCGGTCTTCGTA 60.069 52.381 0.00 0.00 40.32 3.43
3140 4572 0.318784 GTGCAGTCTTCGGTCTTCGT 60.319 55.000 0.00 0.00 40.32 3.85
3141 4573 1.009389 GGTGCAGTCTTCGGTCTTCG 61.009 60.000 0.00 0.00 40.90 3.79
3142 4574 0.670854 GGGTGCAGTCTTCGGTCTTC 60.671 60.000 0.00 0.00 0.00 2.87
3143 4575 1.371558 GGGTGCAGTCTTCGGTCTT 59.628 57.895 0.00 0.00 0.00 3.01
3144 4576 2.932234 CGGGTGCAGTCTTCGGTCT 61.932 63.158 0.00 0.00 0.00 3.85
3145 4577 2.432628 CGGGTGCAGTCTTCGGTC 60.433 66.667 0.00 0.00 0.00 4.79
3146 4578 3.231736 ACGGGTGCAGTCTTCGGT 61.232 61.111 0.00 0.00 0.00 4.69
3147 4579 2.738521 CACGGGTGCAGTCTTCGG 60.739 66.667 0.00 0.00 0.00 4.30
3148 4580 2.022129 GACACGGGTGCAGTCTTCG 61.022 63.158 0.00 0.00 0.00 3.79
3149 4581 1.668151 GGACACGGGTGCAGTCTTC 60.668 63.158 3.67 0.00 35.12 2.87
3150 4582 2.426023 GGACACGGGTGCAGTCTT 59.574 61.111 3.67 0.00 35.12 3.01
3151 4583 3.991051 CGGACACGGGTGCAGTCT 61.991 66.667 10.80 0.00 34.61 3.24
3165 4597 2.667470 CCAAAGAGAGTCCTATCCGGA 58.333 52.381 6.61 6.61 40.30 5.14
3166 4598 1.069358 GCCAAAGAGAGTCCTATCCGG 59.931 57.143 0.00 0.00 0.00 5.14
3167 4599 1.269309 CGCCAAAGAGAGTCCTATCCG 60.269 57.143 0.00 0.00 0.00 4.18
3168 4600 1.757699 ACGCCAAAGAGAGTCCTATCC 59.242 52.381 0.00 0.00 0.00 2.59
3169 4601 2.482142 CCACGCCAAAGAGAGTCCTATC 60.482 54.545 0.00 0.00 0.00 2.08
3170 4602 1.482593 CCACGCCAAAGAGAGTCCTAT 59.517 52.381 0.00 0.00 0.00 2.57
3171 4603 0.895530 CCACGCCAAAGAGAGTCCTA 59.104 55.000 0.00 0.00 0.00 2.94
3172 4604 0.832135 TCCACGCCAAAGAGAGTCCT 60.832 55.000 0.00 0.00 0.00 3.85
3173 4605 0.034896 TTCCACGCCAAAGAGAGTCC 59.965 55.000 0.00 0.00 0.00 3.85
3174 4606 1.433534 CTTCCACGCCAAAGAGAGTC 58.566 55.000 0.00 0.00 0.00 3.36
3175 4607 0.035458 CCTTCCACGCCAAAGAGAGT 59.965 55.000 0.00 0.00 0.00 3.24
3176 4608 1.301677 GCCTTCCACGCCAAAGAGAG 61.302 60.000 0.00 0.00 0.00 3.20
3177 4609 1.302511 GCCTTCCACGCCAAAGAGA 60.303 57.895 0.00 0.00 0.00 3.10
3178 4610 1.172180 TTGCCTTCCACGCCAAAGAG 61.172 55.000 0.00 0.00 0.00 2.85
3179 4611 0.753479 TTTGCCTTCCACGCCAAAGA 60.753 50.000 0.00 0.00 0.00 2.52
3180 4612 0.597377 GTTTGCCTTCCACGCCAAAG 60.597 55.000 0.00 0.00 0.00 2.77
3181 4613 1.040339 AGTTTGCCTTCCACGCCAAA 61.040 50.000 0.00 0.00 0.00 3.28
3182 4614 1.040339 AAGTTTGCCTTCCACGCCAA 61.040 50.000 0.00 0.00 0.00 4.52
3183 4615 1.454847 AAGTTTGCCTTCCACGCCA 60.455 52.632 0.00 0.00 0.00 5.69
3184 4616 1.007387 CAAGTTTGCCTTCCACGCC 60.007 57.895 0.00 0.00 0.00 5.68
3185 4617 1.007387 CCAAGTTTGCCTTCCACGC 60.007 57.895 0.00 0.00 0.00 5.34
3186 4618 1.007387 GCCAAGTTTGCCTTCCACG 60.007 57.895 0.00 0.00 0.00 4.94
3187 4619 1.007387 CGCCAAGTTTGCCTTCCAC 60.007 57.895 0.00 0.00 0.00 4.02
3188 4620 2.199652 CCGCCAAGTTTGCCTTCCA 61.200 57.895 0.00 0.00 0.00 3.53
3189 4621 2.650778 CCGCCAAGTTTGCCTTCC 59.349 61.111 0.00 0.00 0.00 3.46
3190 4622 2.049156 GCCGCCAAGTTTGCCTTC 60.049 61.111 0.00 0.00 0.00 3.46
3191 4623 3.615709 GGCCGCCAAGTTTGCCTT 61.616 61.111 3.91 0.00 40.77 4.35
3194 4626 1.928706 TATTCGGCCGCCAAGTTTGC 61.929 55.000 23.51 0.00 0.00 3.68
3195 4627 0.738389 ATATTCGGCCGCCAAGTTTG 59.262 50.000 23.51 0.00 0.00 2.93
3196 4628 0.738389 CATATTCGGCCGCCAAGTTT 59.262 50.000 23.51 0.00 0.00 2.66
3197 4629 0.393808 ACATATTCGGCCGCCAAGTT 60.394 50.000 23.51 0.00 0.00 2.66
3198 4630 0.466543 TACATATTCGGCCGCCAAGT 59.533 50.000 23.51 16.96 0.00 3.16
3199 4631 1.148310 CTACATATTCGGCCGCCAAG 58.852 55.000 23.51 11.58 0.00 3.61
3200 4632 0.753867 TCTACATATTCGGCCGCCAA 59.246 50.000 23.51 11.69 0.00 4.52
3201 4633 0.973632 ATCTACATATTCGGCCGCCA 59.026 50.000 23.51 10.28 0.00 5.69
3202 4634 2.000447 GAATCTACATATTCGGCCGCC 59.000 52.381 23.51 0.00 0.00 6.13
3203 4635 2.000447 GGAATCTACATATTCGGCCGC 59.000 52.381 23.51 0.26 36.84 6.53
3204 4636 3.594603 AGGAATCTACATATTCGGCCG 57.405 47.619 22.12 22.12 36.84 6.13
3205 4637 5.552178 AGAAAGGAATCTACATATTCGGCC 58.448 41.667 0.00 0.00 36.84 6.13
3206 4638 7.012421 ACAAAGAAAGGAATCTACATATTCGGC 59.988 37.037 0.00 0.00 36.84 5.54
3207 4639 8.438676 ACAAAGAAAGGAATCTACATATTCGG 57.561 34.615 0.00 0.00 36.84 4.30
3211 4643 9.326413 CGGTTACAAAGAAAGGAATCTACATAT 57.674 33.333 0.00 0.00 0.00 1.78
3212 4644 8.533657 TCGGTTACAAAGAAAGGAATCTACATA 58.466 33.333 0.00 0.00 0.00 2.29
3213 4645 7.391620 TCGGTTACAAAGAAAGGAATCTACAT 58.608 34.615 0.00 0.00 0.00 2.29
3214 4646 6.761312 TCGGTTACAAAGAAAGGAATCTACA 58.239 36.000 0.00 0.00 0.00 2.74
3215 4647 7.764901 AGATCGGTTACAAAGAAAGGAATCTAC 59.235 37.037 0.00 0.00 0.00 2.59
3216 4648 7.848128 AGATCGGTTACAAAGAAAGGAATCTA 58.152 34.615 0.00 0.00 0.00 1.98
3217 4649 6.712276 AGATCGGTTACAAAGAAAGGAATCT 58.288 36.000 0.00 0.00 0.00 2.40
3218 4650 6.986904 AGATCGGTTACAAAGAAAGGAATC 57.013 37.500 0.00 0.00 0.00 2.52
3219 4651 6.715264 ACAAGATCGGTTACAAAGAAAGGAAT 59.285 34.615 0.00 0.00 0.00 3.01
3220 4652 6.017440 CACAAGATCGGTTACAAAGAAAGGAA 60.017 38.462 0.00 0.00 0.00 3.36
3221 4653 5.468746 CACAAGATCGGTTACAAAGAAAGGA 59.531 40.000 0.00 0.00 0.00 3.36
3222 4654 5.238650 ACACAAGATCGGTTACAAAGAAAGG 59.761 40.000 0.00 0.00 0.00 3.11
3223 4655 6.300354 ACACAAGATCGGTTACAAAGAAAG 57.700 37.500 0.00 0.00 0.00 2.62
3224 4656 7.254863 GGTTACACAAGATCGGTTACAAAGAAA 60.255 37.037 0.00 0.00 0.00 2.52
3225 4657 6.203338 GGTTACACAAGATCGGTTACAAAGAA 59.797 38.462 0.00 0.00 0.00 2.52
3226 4658 5.697633 GGTTACACAAGATCGGTTACAAAGA 59.302 40.000 0.00 0.00 0.00 2.52
3227 4659 5.106830 GGGTTACACAAGATCGGTTACAAAG 60.107 44.000 0.00 0.00 0.00 2.77
3228 4660 4.756135 GGGTTACACAAGATCGGTTACAAA 59.244 41.667 0.00 0.00 0.00 2.83
3229 4661 4.040706 AGGGTTACACAAGATCGGTTACAA 59.959 41.667 0.00 0.00 0.00 2.41
3230 4662 3.579586 AGGGTTACACAAGATCGGTTACA 59.420 43.478 0.00 0.00 0.00 2.41
3231 4663 4.198028 AGGGTTACACAAGATCGGTTAC 57.802 45.455 0.00 0.00 0.00 2.50
3232 4664 5.999205 TTAGGGTTACACAAGATCGGTTA 57.001 39.130 0.00 0.00 0.00 2.85
3233 4665 4.895668 TTAGGGTTACACAAGATCGGTT 57.104 40.909 0.00 0.00 0.00 4.44
3234 4666 4.895668 TTTAGGGTTACACAAGATCGGT 57.104 40.909 0.00 0.00 0.00 4.69
3235 4667 4.814771 GGATTTAGGGTTACACAAGATCGG 59.185 45.833 0.00 0.00 0.00 4.18
3236 4668 5.671493 AGGATTTAGGGTTACACAAGATCG 58.329 41.667 0.00 0.00 0.00 3.69
3237 4669 6.056236 GGAGGATTTAGGGTTACACAAGATC 58.944 44.000 0.00 0.00 0.00 2.75
3238 4670 5.104067 GGGAGGATTTAGGGTTACACAAGAT 60.104 44.000 0.00 0.00 0.00 2.40
3239 4671 4.226620 GGGAGGATTTAGGGTTACACAAGA 59.773 45.833 0.00 0.00 0.00 3.02
3240 4672 4.524053 GGGAGGATTTAGGGTTACACAAG 58.476 47.826 0.00 0.00 0.00 3.16
3241 4673 3.054948 CGGGAGGATTTAGGGTTACACAA 60.055 47.826 0.00 0.00 0.00 3.33
3242 4674 2.502538 CGGGAGGATTTAGGGTTACACA 59.497 50.000 0.00 0.00 0.00 3.72
3243 4675 3.189618 CGGGAGGATTTAGGGTTACAC 57.810 52.381 0.00 0.00 0.00 2.90
3258 4690 3.323243 CGGTTTATATAAGCACCGGGAG 58.677 50.000 22.79 0.00 46.92 4.30
3259 4691 3.389925 CGGTTTATATAAGCACCGGGA 57.610 47.619 22.79 0.00 46.92 5.14
3263 4695 4.040095 AGTCCTCCGGTTTATATAAGCACC 59.960 45.833 10.95 8.55 0.00 5.01
3264 4696 5.211174 AGTCCTCCGGTTTATATAAGCAC 57.789 43.478 10.95 0.91 0.00 4.40
3265 4697 5.881923 AAGTCCTCCGGTTTATATAAGCA 57.118 39.130 10.95 0.00 0.00 3.91
3266 4698 6.990798 ACTAAGTCCTCCGGTTTATATAAGC 58.009 40.000 0.00 0.91 0.00 3.09
3290 4722 3.095912 TGAGTATCTGTCCTTTCCGGA 57.904 47.619 0.00 0.00 35.93 5.14
3291 4723 5.290386 GTTATGAGTATCTGTCCTTTCCGG 58.710 45.833 0.00 0.00 34.92 5.14
3292 4724 5.163447 TGGTTATGAGTATCTGTCCTTTCCG 60.163 44.000 0.00 0.00 34.92 4.30
3293 4725 6.235231 TGGTTATGAGTATCTGTCCTTTCC 57.765 41.667 0.00 0.00 34.92 3.13
3294 4726 8.643324 ACTATGGTTATGAGTATCTGTCCTTTC 58.357 37.037 0.00 0.00 34.92 2.62
3295 4727 8.554490 ACTATGGTTATGAGTATCTGTCCTTT 57.446 34.615 0.00 0.00 34.92 3.11
3296 4728 7.785028 TGACTATGGTTATGAGTATCTGTCCTT 59.215 37.037 0.00 0.00 34.92 3.36
3297 4729 7.231722 GTGACTATGGTTATGAGTATCTGTCCT 59.768 40.741 0.00 0.00 34.92 3.85
3298 4730 7.014326 TGTGACTATGGTTATGAGTATCTGTCC 59.986 40.741 0.00 0.00 34.92 4.02
3299 4731 7.863375 GTGTGACTATGGTTATGAGTATCTGTC 59.137 40.741 0.00 0.00 34.92 3.51
3300 4732 7.342026 TGTGTGACTATGGTTATGAGTATCTGT 59.658 37.037 0.00 0.00 34.92 3.41
3301 4733 7.716612 TGTGTGACTATGGTTATGAGTATCTG 58.283 38.462 0.00 0.00 34.92 2.90
3302 4734 7.014711 CCTGTGTGACTATGGTTATGAGTATCT 59.985 40.741 0.00 0.00 34.92 1.98
3303 4735 7.148641 CCTGTGTGACTATGGTTATGAGTATC 58.851 42.308 0.00 0.00 0.00 2.24
3304 4736 6.463049 GCCTGTGTGACTATGGTTATGAGTAT 60.463 42.308 0.00 0.00 0.00 2.12
3305 4737 5.163447 GCCTGTGTGACTATGGTTATGAGTA 60.163 44.000 0.00 0.00 0.00 2.59
3306 4738 4.383118 GCCTGTGTGACTATGGTTATGAGT 60.383 45.833 0.00 0.00 0.00 3.41
3307 4739 4.122776 GCCTGTGTGACTATGGTTATGAG 58.877 47.826 0.00 0.00 0.00 2.90
3308 4740 3.774766 AGCCTGTGTGACTATGGTTATGA 59.225 43.478 0.00 0.00 0.00 2.15
3309 4741 4.142609 AGCCTGTGTGACTATGGTTATG 57.857 45.455 0.00 0.00 0.00 1.90
3310 4742 5.069251 GTCTAGCCTGTGTGACTATGGTTAT 59.931 44.000 0.00 0.00 0.00 1.89
3311 4743 4.401519 GTCTAGCCTGTGTGACTATGGTTA 59.598 45.833 0.00 0.00 0.00 2.85
3312 4744 3.195825 GTCTAGCCTGTGTGACTATGGTT 59.804 47.826 0.00 0.00 0.00 3.67
3313 4745 2.761208 GTCTAGCCTGTGTGACTATGGT 59.239 50.000 0.00 0.00 0.00 3.55
3314 4746 3.027412 AGTCTAGCCTGTGTGACTATGG 58.973 50.000 0.00 0.00 37.92 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.