Multiple sequence alignment - TraesCS1D01G079300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G079300 chr1D 100.000 4332 0 0 1 4332 61948289 61943958 0.000000e+00 8000.0
1 TraesCS1D01G079300 chr1A 96.100 3795 113 24 1 3778 59860671 59856895 0.000000e+00 6156.0
2 TraesCS1D01G079300 chr1A 94.043 470 17 2 3866 4332 59842563 59842102 0.000000e+00 702.0
3 TraesCS1D01G079300 chr1A 97.590 83 2 0 3749 3831 59856868 59856786 4.520000e-30 143.0
4 TraesCS1D01G079300 chr1A 100.000 30 0 0 3749 3778 59856896 59856867 6.050000e-04 56.5
5 TraesCS1D01G079300 chr1B 93.018 2306 133 13 1468 3758 98724136 98721844 0.000000e+00 3341.0
6 TraesCS1D01G079300 chr1B 91.340 1478 75 17 1 1471 98725627 98724196 0.000000e+00 1971.0
7 TraesCS1D01G079300 chr1B 92.506 387 17 5 3958 4332 98447606 98447220 1.060000e-150 544.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G079300 chr1D 61943958 61948289 4331 True 8000.0 8000 100.000000 1 4332 1 chr1D.!!$R1 4331
1 TraesCS1D01G079300 chr1A 59856786 59860671 3885 True 2118.5 6156 97.896667 1 3831 3 chr1A.!!$R2 3830
2 TraesCS1D01G079300 chr1B 98721844 98725627 3783 True 2656.0 3341 92.179000 1 3758 2 chr1B.!!$R2 3757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 597 0.238289 CGCGAATTGGTCAACAAGCT 59.762 50.0 0.00 0.00 43.48 3.74 F
708 715 0.318441 TTCCTGCTTGTGACGAGAGG 59.682 55.0 3.49 7.84 0.00 3.69 F
1801 1875 0.608856 AGATGAACCAACGCATGCCA 60.609 50.0 13.15 2.18 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 1851 3.365868 GCATGCGTTGGTTCATCTTGTTA 60.366 43.478 0.00 0.0 0.00 2.41 R
2124 2200 6.033831 CGAAGTCACATAATTTCAATTGGTGC 59.966 38.462 5.42 1.4 36.15 5.01 R
3336 3428 0.886490 AACTTCAAGCAGCCGTCTGG 60.886 55.000 0.00 0.0 40.65 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 82 1.602323 CCCTCCTCTCCTCCGATCG 60.602 68.421 8.51 8.51 0.00 3.69
231 234 3.067106 CAATCAATCCTATCCCGGTTCG 58.933 50.000 0.00 0.00 0.00 3.95
334 337 1.453155 CTGCGTTTTAGGTGATGGCT 58.547 50.000 0.00 0.00 0.00 4.75
343 346 2.045926 GTGATGGCTTGCCCTCGT 60.046 61.111 9.35 0.00 0.00 4.18
418 421 3.984749 GGGGCTCGGAGCTCGATC 61.985 72.222 27.47 11.77 44.46 3.69
441 445 2.286523 CCTCTGCTGGGTTCTCGGT 61.287 63.158 0.00 0.00 0.00 4.69
511 516 3.548818 GGCTTCGATGCAAATATGGTGAC 60.549 47.826 22.93 0.00 34.04 3.67
543 548 8.339714 TCGAGAATTGTGTCGTTTTTAATTTCT 58.660 29.630 0.00 0.00 41.15 2.52
592 597 0.238289 CGCGAATTGGTCAACAAGCT 59.762 50.000 0.00 0.00 43.48 3.74
624 629 1.087771 CGGTGGGTATCGAGTTTGCC 61.088 60.000 0.00 0.00 30.05 4.52
632 637 1.571919 ATCGAGTTTGCCGAGTATGC 58.428 50.000 0.00 0.00 39.55 3.14
707 714 2.376808 ATTCCTGCTTGTGACGAGAG 57.623 50.000 3.49 0.00 0.00 3.20
708 715 0.318441 TTCCTGCTTGTGACGAGAGG 59.682 55.000 3.49 7.84 0.00 3.69
766 773 2.859165 AGGAATTTGGCAGTCGAGAA 57.141 45.000 0.00 0.00 0.00 2.87
772 779 2.507324 GGCAGTCGAGAAGGCGTC 60.507 66.667 0.00 0.00 0.00 5.19
796 803 6.205270 TCGGGAGTGTAAAATTACAACCTTTC 59.795 38.462 20.08 10.12 44.46 2.62
797 804 6.016943 CGGGAGTGTAAAATTACAACCTTTCA 60.017 38.462 20.08 0.00 44.46 2.69
798 805 7.368059 GGGAGTGTAAAATTACAACCTTTCAG 58.632 38.462 20.08 0.00 44.46 3.02
799 806 6.861572 GGAGTGTAAAATTACAACCTTTCAGC 59.138 38.462 7.53 0.00 44.46 4.26
870 878 4.058817 CGTCCTTAGACAATTATCCTGGC 58.941 47.826 0.00 0.00 43.73 4.85
917 925 2.726760 CTGTACGTTTCTGACTCACAGC 59.273 50.000 0.00 0.00 45.38 4.40
922 930 2.545526 CGTTTCTGACTCACAGCAATGT 59.454 45.455 0.00 0.00 45.38 2.71
1016 1024 0.623723 ATTATGGCCTCGGTTGGTGT 59.376 50.000 3.32 0.00 0.00 4.16
1122 1133 4.416848 AGCATAAGGGATGACAGGGTAATT 59.583 41.667 0.00 0.00 37.82 1.40
1148 1159 2.614259 AGACTGGATGACCACTTCACT 58.386 47.619 0.00 0.00 41.77 3.41
1411 1423 0.824109 TTAGCTACATGGCTGAGCGT 59.176 50.000 6.71 0.00 43.01 5.07
1777 1851 5.759763 TGCTCATCGTGTCATTAAGCATTAT 59.240 36.000 0.00 0.00 33.67 1.28
1801 1875 0.608856 AGATGAACCAACGCATGCCA 60.609 50.000 13.15 2.18 0.00 4.92
1857 1931 1.135575 GTTCATGCTCTTTTCCTGCCG 60.136 52.381 0.00 0.00 0.00 5.69
2018 2094 6.963049 AATCTTCTGGTTCGTACATTACAC 57.037 37.500 0.00 0.00 0.00 2.90
2035 2111 7.077605 ACATTACACATCAATTGAACACTTCG 58.922 34.615 13.09 1.06 0.00 3.79
2077 2153 7.845066 AGTTAAGCACTACTTTTGGTATAGC 57.155 36.000 0.00 0.00 39.97 2.97
2124 2200 1.299541 GCCAGGTGAATCCACATACG 58.700 55.000 0.00 0.00 44.93 3.06
2209 2286 3.542712 ATTCACACTTCACGACATTGC 57.457 42.857 0.00 0.00 0.00 3.56
2400 2477 6.510790 CCTTCTAGGACAGGTAAGTGACCAA 61.511 48.000 0.00 0.00 44.60 3.67
2618 2695 6.264518 TGTTTCCAAGGAAGTTACCATCTTTC 59.735 38.462 1.32 0.00 35.38 2.62
2709 2786 9.897744 ATTAAGTGCATGAATCCAAATTATACG 57.102 29.630 0.00 0.00 0.00 3.06
3181 3273 7.327975 CCATGGTTAGTCTACAACATCAACTA 58.672 38.462 2.57 0.00 0.00 2.24
3187 3279 5.715070 AGTCTACAACATCAACTAGCACTC 58.285 41.667 0.00 0.00 0.00 3.51
3259 3351 3.433740 GGACTTGAACAGAGTTGAAGGGT 60.434 47.826 12.41 0.00 0.00 4.34
3411 3503 2.065799 ACCCCAGGAGTTTGAGATTGT 58.934 47.619 0.00 0.00 0.00 2.71
3458 3550 7.017645 GCGATGACACATGTGATTATTATTCC 58.982 38.462 31.94 9.26 0.00 3.01
3529 3622 4.878971 CGATGTAACAAACCACCCATGATA 59.121 41.667 0.00 0.00 0.00 2.15
3688 3781 7.038048 TCATCACATTGTTCTGTCAGATACTC 58.962 38.462 2.68 0.00 0.00 2.59
3701 3794 8.370940 TCTGTCAGATACTCTCAAGTTTTTCAT 58.629 33.333 0.00 0.00 36.92 2.57
3744 3837 5.652014 ACTGAACAAGTTGACAAATCCTCAA 59.348 36.000 10.54 0.00 34.57 3.02
3745 3838 5.890334 TGAACAAGTTGACAAATCCTCAAC 58.110 37.500 10.54 3.56 45.36 3.18
3746 3839 4.918810 ACAAGTTGACAAATCCTCAACC 57.081 40.909 10.54 0.00 45.92 3.77
3747 3840 4.277476 ACAAGTTGACAAATCCTCAACCA 58.723 39.130 10.54 0.00 45.92 3.67
3795 3946 1.369625 CTGCCTCGTGTTTGTATCCC 58.630 55.000 0.00 0.00 0.00 3.85
3806 3957 3.763360 TGTTTGTATCCCAGCAAATCAGG 59.237 43.478 0.00 0.00 37.02 3.86
3831 3982 2.578021 AGGGCCTGCATTCTCTTAAGAA 59.422 45.455 4.50 0.00 45.36 2.52
3832 3983 3.010584 AGGGCCTGCATTCTCTTAAGAAA 59.989 43.478 4.50 4.81 44.49 2.52
3833 3984 3.763897 GGGCCTGCATTCTCTTAAGAAAA 59.236 43.478 6.63 0.00 44.49 2.29
3834 3985 4.220602 GGGCCTGCATTCTCTTAAGAAAAA 59.779 41.667 6.63 4.66 44.49 1.94
3835 3986 5.405797 GGCCTGCATTCTCTTAAGAAAAAG 58.594 41.667 6.63 0.00 44.49 2.27
3836 3987 5.183904 GGCCTGCATTCTCTTAAGAAAAAGA 59.816 40.000 6.63 0.00 44.49 2.52
3837 3988 6.294731 GGCCTGCATTCTCTTAAGAAAAAGAA 60.295 38.462 6.63 6.96 44.49 2.52
3838 3989 6.805760 GCCTGCATTCTCTTAAGAAAAAGAAG 59.194 38.462 6.63 0.71 44.49 2.85
3839 3990 7.311408 CCTGCATTCTCTTAAGAAAAAGAAGG 58.689 38.462 6.43 6.43 44.49 3.46
3840 3991 7.175641 CCTGCATTCTCTTAAGAAAAAGAAGGA 59.824 37.037 13.56 0.00 44.49 3.36
3841 3992 8.463930 TGCATTCTCTTAAGAAAAAGAAGGAA 57.536 30.769 16.49 10.18 44.49 3.36
3842 3993 8.912988 TGCATTCTCTTAAGAAAAAGAAGGAAA 58.087 29.630 16.49 5.38 44.49 3.13
3843 3994 9.750125 GCATTCTCTTAAGAAAAAGAAGGAAAA 57.250 29.630 16.49 0.00 44.49 2.29
3846 3997 9.475620 TTCTCTTAAGAAAAAGAAGGAAAAGGT 57.524 29.630 6.63 0.00 38.58 3.50
3847 3998 8.903820 TCTCTTAAGAAAAAGAAGGAAAAGGTG 58.096 33.333 6.63 0.00 35.14 4.00
3848 3999 8.589701 TCTTAAGAAAAAGAAGGAAAAGGTGT 57.410 30.769 1.68 0.00 32.59 4.16
3849 4000 8.466798 TCTTAAGAAAAAGAAGGAAAAGGTGTG 58.533 33.333 1.68 0.00 32.59 3.82
3850 4001 5.598416 AGAAAAAGAAGGAAAAGGTGTGG 57.402 39.130 0.00 0.00 0.00 4.17
3851 4002 3.819564 AAAAGAAGGAAAAGGTGTGGC 57.180 42.857 0.00 0.00 0.00 5.01
3852 4003 2.755952 AAGAAGGAAAAGGTGTGGCT 57.244 45.000 0.00 0.00 0.00 4.75
3853 4004 3.876309 AAGAAGGAAAAGGTGTGGCTA 57.124 42.857 0.00 0.00 0.00 3.93
3854 4005 3.141767 AGAAGGAAAAGGTGTGGCTAC 57.858 47.619 0.00 0.00 0.00 3.58
3855 4006 1.804748 GAAGGAAAAGGTGTGGCTACG 59.195 52.381 0.00 0.00 0.00 3.51
3856 4007 0.605589 AGGAAAAGGTGTGGCTACGC 60.606 55.000 5.00 5.00 36.58 4.42
3866 4017 3.858225 GGCTACGCCCAGGGGTAC 61.858 72.222 7.91 6.51 44.06 3.34
3867 4018 2.762875 GCTACGCCCAGGGGTACT 60.763 66.667 7.91 0.00 41.53 2.73
3868 4019 2.794028 GCTACGCCCAGGGGTACTC 61.794 68.421 7.91 0.93 41.53 2.59
3869 4020 2.440796 TACGCCCAGGGGTACTCG 60.441 66.667 7.91 4.03 41.53 4.18
3872 4023 3.851128 GCCCAGGGGTACTCGCTC 61.851 72.222 7.91 0.00 36.43 5.03
3873 4024 2.363795 CCCAGGGGTACTCGCTCA 60.364 66.667 0.00 0.00 36.43 4.26
3874 4025 2.427245 CCCAGGGGTACTCGCTCAG 61.427 68.421 0.00 0.00 36.43 3.35
3875 4026 1.682684 CCAGGGGTACTCGCTCAGT 60.683 63.158 0.00 0.00 36.43 3.41
3876 4027 1.668101 CCAGGGGTACTCGCTCAGTC 61.668 65.000 0.00 0.00 36.43 3.51
3877 4028 1.380112 AGGGGTACTCGCTCAGTCC 60.380 63.158 0.00 0.00 36.43 3.85
3878 4029 2.424733 GGGGTACTCGCTCAGTCCC 61.425 68.421 0.00 9.74 39.80 4.46
3879 4030 2.424733 GGGTACTCGCTCAGTCCCC 61.425 68.421 0.00 0.00 43.83 4.81
3880 4031 1.380112 GGTACTCGCTCAGTCCCCT 60.380 63.158 0.00 0.00 36.43 4.79
3881 4032 0.971447 GGTACTCGCTCAGTCCCCTT 60.971 60.000 0.00 0.00 36.43 3.95
3882 4033 1.684248 GGTACTCGCTCAGTCCCCTTA 60.684 57.143 0.00 0.00 36.43 2.69
3883 4034 2.308690 GTACTCGCTCAGTCCCCTTAT 58.691 52.381 0.00 0.00 36.43 1.73
3884 4035 1.404843 ACTCGCTCAGTCCCCTTATC 58.595 55.000 0.00 0.00 0.00 1.75
3885 4036 0.676736 CTCGCTCAGTCCCCTTATCC 59.323 60.000 0.00 0.00 0.00 2.59
3886 4037 0.261991 TCGCTCAGTCCCCTTATCCT 59.738 55.000 0.00 0.00 0.00 3.24
3887 4038 1.123928 CGCTCAGTCCCCTTATCCTT 58.876 55.000 0.00 0.00 0.00 3.36
3888 4039 2.091499 TCGCTCAGTCCCCTTATCCTTA 60.091 50.000 0.00 0.00 0.00 2.69
3889 4040 2.036089 CGCTCAGTCCCCTTATCCTTAC 59.964 54.545 0.00 0.00 0.00 2.34
3890 4041 2.369203 GCTCAGTCCCCTTATCCTTACC 59.631 54.545 0.00 0.00 0.00 2.85
3891 4042 2.973406 CTCAGTCCCCTTATCCTTACCC 59.027 54.545 0.00 0.00 0.00 3.69
3892 4043 2.595380 TCAGTCCCCTTATCCTTACCCT 59.405 50.000 0.00 0.00 0.00 4.34
3893 4044 3.014807 TCAGTCCCCTTATCCTTACCCTT 59.985 47.826 0.00 0.00 0.00 3.95
3894 4045 3.136626 CAGTCCCCTTATCCTTACCCTTG 59.863 52.174 0.00 0.00 0.00 3.61
3895 4046 2.442126 GTCCCCTTATCCTTACCCTTGG 59.558 54.545 0.00 0.00 0.00 3.61
3896 4047 1.780919 CCCCTTATCCTTACCCTTGGG 59.219 57.143 3.77 3.77 0.00 4.12
3897 4048 2.499515 CCCTTATCCTTACCCTTGGGT 58.500 52.381 16.31 16.31 0.00 4.51
3898 4049 2.856864 CCCTTATCCTTACCCTTGGGTT 59.143 50.000 17.30 0.77 0.00 4.11
3899 4050 3.117625 CCCTTATCCTTACCCTTGGGTTC 60.118 52.174 17.30 0.00 0.00 3.62
3900 4051 3.117625 CCTTATCCTTACCCTTGGGTTCC 60.118 52.174 17.30 0.00 0.00 3.62
3901 4052 2.068831 ATCCTTACCCTTGGGTTCCA 57.931 50.000 17.30 0.00 0.00 3.53
3902 4053 2.068831 TCCTTACCCTTGGGTTCCAT 57.931 50.000 17.30 0.00 31.53 3.41
3903 4054 1.638589 TCCTTACCCTTGGGTTCCATG 59.361 52.381 17.30 1.74 31.53 3.66
3904 4055 1.341976 CCTTACCCTTGGGTTCCATGG 60.342 57.143 17.30 4.97 45.17 3.66
3910 4061 1.959042 CTTGGGTTCCATGGAGATCG 58.041 55.000 15.53 0.00 31.53 3.69
3911 4062 1.486310 CTTGGGTTCCATGGAGATCGA 59.514 52.381 15.53 7.22 31.53 3.59
3912 4063 1.806496 TGGGTTCCATGGAGATCGAT 58.194 50.000 15.53 0.00 0.00 3.59
3913 4064 1.417517 TGGGTTCCATGGAGATCGATG 59.582 52.381 15.53 0.00 32.75 3.84
3914 4065 1.694150 GGGTTCCATGGAGATCGATGA 59.306 52.381 15.53 0.00 34.54 2.92
3915 4066 2.104792 GGGTTCCATGGAGATCGATGAA 59.895 50.000 15.53 0.00 34.54 2.57
3916 4067 3.397482 GGTTCCATGGAGATCGATGAAG 58.603 50.000 15.53 0.00 34.54 3.02
3917 4068 3.070159 GGTTCCATGGAGATCGATGAAGA 59.930 47.826 15.53 0.00 34.54 2.87
3918 4069 4.054671 GTTCCATGGAGATCGATGAAGAC 58.945 47.826 15.53 1.61 34.54 3.01
3919 4070 3.299503 TCCATGGAGATCGATGAAGACA 58.700 45.455 11.44 0.00 34.54 3.41
3920 4071 3.899980 TCCATGGAGATCGATGAAGACAT 59.100 43.478 11.44 0.00 39.67 3.06
3921 4072 5.079643 TCCATGGAGATCGATGAAGACATA 58.920 41.667 11.44 0.00 36.82 2.29
3922 4073 5.184671 TCCATGGAGATCGATGAAGACATAG 59.815 44.000 11.44 0.00 36.82 2.23
3923 4074 4.511617 TGGAGATCGATGAAGACATAGC 57.488 45.455 0.54 0.00 36.82 2.97
3924 4075 3.891366 TGGAGATCGATGAAGACATAGCA 59.109 43.478 0.54 0.00 36.82 3.49
3925 4076 4.342092 TGGAGATCGATGAAGACATAGCAA 59.658 41.667 0.54 0.00 36.82 3.91
3926 4077 4.922692 GGAGATCGATGAAGACATAGCAAG 59.077 45.833 0.54 0.00 36.82 4.01
3927 4078 5.278709 GGAGATCGATGAAGACATAGCAAGA 60.279 44.000 0.54 0.00 36.82 3.02
3928 4079 6.154203 AGATCGATGAAGACATAGCAAGAA 57.846 37.500 0.54 0.00 36.82 2.52
3929 4080 6.215121 AGATCGATGAAGACATAGCAAGAAG 58.785 40.000 0.54 0.00 36.82 2.85
3930 4081 5.582689 TCGATGAAGACATAGCAAGAAGA 57.417 39.130 0.00 0.00 36.82 2.87
3931 4082 6.154203 TCGATGAAGACATAGCAAGAAGAT 57.846 37.500 0.00 0.00 36.82 2.40
3932 4083 6.212235 TCGATGAAGACATAGCAAGAAGATC 58.788 40.000 0.00 0.00 36.82 2.75
3933 4084 5.981915 CGATGAAGACATAGCAAGAAGATCA 59.018 40.000 0.00 0.00 36.82 2.92
3934 4085 6.478016 CGATGAAGACATAGCAAGAAGATCAA 59.522 38.462 0.00 0.00 36.82 2.57
3935 4086 7.171167 CGATGAAGACATAGCAAGAAGATCAAT 59.829 37.037 0.00 0.00 36.82 2.57
3936 4087 7.549615 TGAAGACATAGCAAGAAGATCAATG 57.450 36.000 0.00 0.00 0.00 2.82
3937 4088 7.333323 TGAAGACATAGCAAGAAGATCAATGA 58.667 34.615 0.00 0.00 0.00 2.57
3938 4089 7.825761 TGAAGACATAGCAAGAAGATCAATGAA 59.174 33.333 0.00 0.00 0.00 2.57
3939 4090 8.571461 AAGACATAGCAAGAAGATCAATGAAA 57.429 30.769 0.00 0.00 0.00 2.69
3940 4091 7.983307 AGACATAGCAAGAAGATCAATGAAAC 58.017 34.615 0.00 0.00 0.00 2.78
3941 4092 7.066766 AGACATAGCAAGAAGATCAATGAAACC 59.933 37.037 0.00 0.00 0.00 3.27
3942 4093 6.888632 ACATAGCAAGAAGATCAATGAAACCT 59.111 34.615 0.00 0.00 0.00 3.50
3943 4094 7.395489 ACATAGCAAGAAGATCAATGAAACCTT 59.605 33.333 0.00 0.00 0.00 3.50
3944 4095 6.661304 AGCAAGAAGATCAATGAAACCTTT 57.339 33.333 0.00 0.00 0.00 3.11
3945 4096 7.765695 AGCAAGAAGATCAATGAAACCTTTA 57.234 32.000 0.00 0.00 0.00 1.85
3946 4097 8.358582 AGCAAGAAGATCAATGAAACCTTTAT 57.641 30.769 0.00 0.00 0.00 1.40
3947 4098 8.810041 AGCAAGAAGATCAATGAAACCTTTATT 58.190 29.630 0.00 0.00 0.00 1.40
3948 4099 9.428097 GCAAGAAGATCAATGAAACCTTTATTT 57.572 29.630 0.00 0.00 0.00 1.40
3970 4121 8.798859 ATTTGTATGATTATATCCAGCTGGTC 57.201 34.615 31.58 20.60 36.34 4.02
3971 4122 6.933514 TGTATGATTATATCCAGCTGGTCA 57.066 37.500 31.58 25.28 36.34 4.02
3972 4123 7.315066 TGTATGATTATATCCAGCTGGTCAA 57.685 36.000 31.58 20.05 36.34 3.18
3973 4124 7.744733 TGTATGATTATATCCAGCTGGTCAAA 58.255 34.615 31.58 20.65 36.34 2.69
3974 4125 7.879677 TGTATGATTATATCCAGCTGGTCAAAG 59.120 37.037 31.58 5.81 36.34 2.77
3975 4126 6.499106 TGATTATATCCAGCTGGTCAAAGA 57.501 37.500 31.58 12.54 36.34 2.52
3976 4127 6.899089 TGATTATATCCAGCTGGTCAAAGAA 58.101 36.000 31.58 18.06 36.34 2.52
3977 4128 7.520798 TGATTATATCCAGCTGGTCAAAGAAT 58.479 34.615 31.58 21.35 36.34 2.40
3978 4129 7.663081 TGATTATATCCAGCTGGTCAAAGAATC 59.337 37.037 31.58 26.62 36.34 2.52
3979 4130 2.099141 TCCAGCTGGTCAAAGAATCG 57.901 50.000 31.58 2.09 36.34 3.34
3980 4131 1.089920 CCAGCTGGTCAAAGAATCGG 58.910 55.000 25.53 0.00 0.00 4.18
3981 4132 1.611673 CCAGCTGGTCAAAGAATCGGT 60.612 52.381 25.53 0.00 0.00 4.69
3982 4133 2.154462 CAGCTGGTCAAAGAATCGGTT 58.846 47.619 5.57 0.00 0.00 4.44
3983 4134 2.095567 CAGCTGGTCAAAGAATCGGTTG 60.096 50.000 5.57 0.00 0.00 3.77
3984 4135 2.151202 GCTGGTCAAAGAATCGGTTGA 58.849 47.619 0.00 0.00 0.00 3.18
4010 4161 2.841442 AAAAGGAAGAGTCGACCCAG 57.159 50.000 13.01 0.00 0.00 4.45
4011 4162 2.011122 AAAGGAAGAGTCGACCCAGA 57.989 50.000 13.01 0.00 0.00 3.86
4012 4163 1.258676 AAGGAAGAGTCGACCCAGAC 58.741 55.000 13.01 0.13 41.23 3.51
4013 4164 0.112606 AGGAAGAGTCGACCCAGACA 59.887 55.000 13.01 0.00 43.24 3.41
4014 4165 0.244178 GGAAGAGTCGACCCAGACAC 59.756 60.000 13.01 0.00 43.24 3.67
4015 4166 0.244178 GAAGAGTCGACCCAGACACC 59.756 60.000 13.01 0.00 43.24 4.16
4016 4167 0.178958 AAGAGTCGACCCAGACACCT 60.179 55.000 13.01 0.00 43.24 4.00
4017 4168 0.697079 AGAGTCGACCCAGACACCTA 59.303 55.000 13.01 0.00 43.24 3.08
4018 4169 0.810016 GAGTCGACCCAGACACCTAC 59.190 60.000 13.01 0.00 43.24 3.18
4019 4170 0.111832 AGTCGACCCAGACACCTACA 59.888 55.000 13.01 0.00 43.24 2.74
4020 4171 0.963962 GTCGACCCAGACACCTACAA 59.036 55.000 3.51 0.00 40.65 2.41
4021 4172 1.342174 GTCGACCCAGACACCTACAAA 59.658 52.381 3.51 0.00 40.65 2.83
4022 4173 2.040939 TCGACCCAGACACCTACAAAA 58.959 47.619 0.00 0.00 0.00 2.44
4023 4174 2.635915 TCGACCCAGACACCTACAAAAT 59.364 45.455 0.00 0.00 0.00 1.82
4024 4175 3.833650 TCGACCCAGACACCTACAAAATA 59.166 43.478 0.00 0.00 0.00 1.40
4025 4176 4.081862 TCGACCCAGACACCTACAAAATAG 60.082 45.833 0.00 0.00 0.00 1.73
4026 4177 4.322499 CGACCCAGACACCTACAAAATAGT 60.322 45.833 0.00 0.00 0.00 2.12
4027 4178 5.161943 ACCCAGACACCTACAAAATAGTC 57.838 43.478 0.00 0.00 0.00 2.59
4028 4179 4.595781 ACCCAGACACCTACAAAATAGTCA 59.404 41.667 0.00 0.00 0.00 3.41
4029 4180 5.072600 ACCCAGACACCTACAAAATAGTCAA 59.927 40.000 0.00 0.00 0.00 3.18
4030 4181 5.411669 CCCAGACACCTACAAAATAGTCAAC 59.588 44.000 0.00 0.00 0.00 3.18
4031 4182 6.231211 CCAGACACCTACAAAATAGTCAACT 58.769 40.000 0.00 0.00 0.00 3.16
4032 4183 6.710744 CCAGACACCTACAAAATAGTCAACTT 59.289 38.462 0.00 0.00 0.00 2.66
4033 4184 7.095187 CCAGACACCTACAAAATAGTCAACTTC 60.095 40.741 0.00 0.00 0.00 3.01
4034 4185 6.645415 AGACACCTACAAAATAGTCAACTTCG 59.355 38.462 0.00 0.00 0.00 3.79
4035 4186 5.699458 ACACCTACAAAATAGTCAACTTCGG 59.301 40.000 0.00 0.00 0.00 4.30
4036 4187 5.929992 CACCTACAAAATAGTCAACTTCGGA 59.070 40.000 0.00 0.00 0.00 4.55
4037 4188 6.090898 CACCTACAAAATAGTCAACTTCGGAG 59.909 42.308 0.00 0.00 0.00 4.63
4038 4189 5.581085 CCTACAAAATAGTCAACTTCGGAGG 59.419 44.000 0.00 0.00 0.00 4.30
4039 4190 5.223449 ACAAAATAGTCAACTTCGGAGGA 57.777 39.130 0.00 0.00 0.00 3.71
4040 4191 5.238583 ACAAAATAGTCAACTTCGGAGGAG 58.761 41.667 0.00 0.00 0.00 3.69
4041 4192 4.473477 AAATAGTCAACTTCGGAGGAGG 57.527 45.455 0.00 0.00 0.00 4.30
4042 4193 2.893215 TAGTCAACTTCGGAGGAGGA 57.107 50.000 0.00 0.00 0.00 3.71
4043 4194 2.239681 AGTCAACTTCGGAGGAGGAT 57.760 50.000 0.00 0.00 0.00 3.24
4044 4195 3.383698 AGTCAACTTCGGAGGAGGATA 57.616 47.619 0.00 0.00 0.00 2.59
4045 4196 3.709587 AGTCAACTTCGGAGGAGGATAA 58.290 45.455 0.00 0.00 0.00 1.75
4046 4197 3.702045 AGTCAACTTCGGAGGAGGATAAG 59.298 47.826 0.00 0.00 0.00 1.73
4047 4198 3.031736 TCAACTTCGGAGGAGGATAAGG 58.968 50.000 0.00 0.00 0.00 2.69
4048 4199 3.031736 CAACTTCGGAGGAGGATAAGGA 58.968 50.000 0.00 0.00 0.00 3.36
4049 4200 3.399952 ACTTCGGAGGAGGATAAGGAA 57.600 47.619 0.00 0.00 0.00 3.36
4050 4201 3.721021 ACTTCGGAGGAGGATAAGGAAA 58.279 45.455 0.00 0.00 0.00 3.13
4051 4202 3.451540 ACTTCGGAGGAGGATAAGGAAAC 59.548 47.826 0.00 0.00 0.00 2.78
4052 4203 2.029623 TCGGAGGAGGATAAGGAAACG 58.970 52.381 0.00 0.00 0.00 3.60
4053 4204 1.538419 CGGAGGAGGATAAGGAAACGC 60.538 57.143 0.00 0.00 0.00 4.84
4054 4205 1.763545 GGAGGAGGATAAGGAAACGCT 59.236 52.381 0.00 0.00 0.00 5.07
4055 4206 2.483889 GGAGGAGGATAAGGAAACGCTG 60.484 54.545 0.00 0.00 0.00 5.18
4056 4207 1.486726 AGGAGGATAAGGAAACGCTGG 59.513 52.381 0.00 0.00 0.00 4.85
4057 4208 1.485066 GGAGGATAAGGAAACGCTGGA 59.515 52.381 0.00 0.00 0.00 3.86
4058 4209 2.483889 GGAGGATAAGGAAACGCTGGAG 60.484 54.545 0.00 0.00 0.00 3.86
4059 4210 1.134371 AGGATAAGGAAACGCTGGAGC 60.134 52.381 0.00 0.00 37.78 4.70
4060 4211 1.406887 GGATAAGGAAACGCTGGAGCA 60.407 52.381 0.00 0.00 42.21 4.26
4061 4212 2.356135 GATAAGGAAACGCTGGAGCAA 58.644 47.619 0.00 0.00 42.21 3.91
4062 4213 1.808411 TAAGGAAACGCTGGAGCAAG 58.192 50.000 0.00 0.00 42.21 4.01
4063 4214 0.179018 AAGGAAACGCTGGAGCAAGT 60.179 50.000 0.00 0.00 42.21 3.16
4064 4215 0.685097 AGGAAACGCTGGAGCAAGTA 59.315 50.000 0.00 0.00 42.21 2.24
4065 4216 1.079503 GGAAACGCTGGAGCAAGTAG 58.920 55.000 0.00 0.00 42.21 2.57
4066 4217 1.608283 GGAAACGCTGGAGCAAGTAGT 60.608 52.381 0.00 0.00 42.21 2.73
4067 4218 2.143925 GAAACGCTGGAGCAAGTAGTT 58.856 47.619 0.00 0.00 42.21 2.24
4068 4219 1.512926 AACGCTGGAGCAAGTAGTTG 58.487 50.000 5.89 5.89 42.21 3.16
4069 4220 0.679505 ACGCTGGAGCAAGTAGTTGA 59.320 50.000 14.64 0.00 42.21 3.18
4070 4221 1.337260 ACGCTGGAGCAAGTAGTTGAG 60.337 52.381 14.64 3.64 42.21 3.02
4071 4222 1.067565 CGCTGGAGCAAGTAGTTGAGA 60.068 52.381 14.64 0.00 42.21 3.27
4072 4223 2.417924 CGCTGGAGCAAGTAGTTGAGAT 60.418 50.000 14.64 0.00 42.21 2.75
4073 4224 3.194062 GCTGGAGCAAGTAGTTGAGATC 58.806 50.000 14.64 8.01 41.59 2.75
4074 4225 3.443037 CTGGAGCAAGTAGTTGAGATCG 58.557 50.000 14.64 0.00 35.46 3.69
4075 4226 3.089284 TGGAGCAAGTAGTTGAGATCGA 58.911 45.455 14.64 3.35 35.46 3.59
4076 4227 3.509967 TGGAGCAAGTAGTTGAGATCGAA 59.490 43.478 14.64 0.00 35.46 3.71
4077 4228 4.109050 GGAGCAAGTAGTTGAGATCGAAG 58.891 47.826 14.64 0.00 35.46 3.79
4078 4229 3.516615 AGCAAGTAGTTGAGATCGAAGC 58.483 45.455 14.64 0.00 35.46 3.86
4079 4230 3.194542 AGCAAGTAGTTGAGATCGAAGCT 59.805 43.478 14.64 0.00 35.46 3.74
4080 4231 3.305629 GCAAGTAGTTGAGATCGAAGCTG 59.694 47.826 14.64 0.00 35.46 4.24
4081 4232 4.738124 CAAGTAGTTGAGATCGAAGCTGA 58.262 43.478 4.11 0.00 35.46 4.26
4082 4233 5.347342 CAAGTAGTTGAGATCGAAGCTGAT 58.653 41.667 4.11 0.00 35.46 2.90
4083 4234 5.590530 AGTAGTTGAGATCGAAGCTGATT 57.409 39.130 0.00 0.00 0.00 2.57
4084 4235 6.701145 AGTAGTTGAGATCGAAGCTGATTA 57.299 37.500 0.00 0.00 0.00 1.75
4085 4236 7.101652 AGTAGTTGAGATCGAAGCTGATTAA 57.898 36.000 0.00 0.00 0.00 1.40
4086 4237 7.721402 AGTAGTTGAGATCGAAGCTGATTAAT 58.279 34.615 0.00 0.00 0.00 1.40
4087 4238 7.865385 AGTAGTTGAGATCGAAGCTGATTAATC 59.135 37.037 8.60 8.60 0.00 1.75
4088 4239 5.689514 AGTTGAGATCGAAGCTGATTAATCG 59.310 40.000 10.80 6.90 36.67 3.34
4089 4240 5.438761 TGAGATCGAAGCTGATTAATCGA 57.561 39.130 10.80 8.26 46.81 3.59
4090 4241 5.456265 TGAGATCGAAGCTGATTAATCGAG 58.544 41.667 11.20 9.94 46.09 4.04
4091 4242 5.239525 TGAGATCGAAGCTGATTAATCGAGA 59.760 40.000 11.20 4.39 46.09 4.04
4092 4243 5.698832 AGATCGAAGCTGATTAATCGAGAG 58.301 41.667 11.20 4.20 46.09 3.20
4093 4244 5.471797 AGATCGAAGCTGATTAATCGAGAGA 59.528 40.000 11.20 5.94 46.09 3.10
4094 4245 6.016693 AGATCGAAGCTGATTAATCGAGAGAA 60.017 38.462 11.20 0.00 46.09 2.87
4095 4246 5.918011 ATCGAAGCTGATTAATCGAGAGAAC 59.082 40.000 11.20 0.00 46.09 3.01
4096 4247 6.460261 ATCGAAGCTGATTAATCGAGAGAACA 60.460 38.462 11.20 0.00 46.09 3.18
4097 4248 7.736810 ATCGAAGCTGATTAATCGAGAGAACAT 60.737 37.037 11.20 0.00 46.09 2.71
4108 4259 4.433615 TCGAGAGAACATGGTAAGAATGC 58.566 43.478 0.00 0.00 37.03 3.56
4109 4260 4.160439 TCGAGAGAACATGGTAAGAATGCT 59.840 41.667 0.00 0.00 37.03 3.79
4110 4261 4.872691 CGAGAGAACATGGTAAGAATGCTT 59.127 41.667 0.00 0.00 38.15 3.91
4111 4262 5.006165 CGAGAGAACATGGTAAGAATGCTTC 59.994 44.000 0.00 0.00 35.56 3.86
4112 4263 4.872691 AGAGAACATGGTAAGAATGCTTCG 59.127 41.667 0.00 0.00 35.56 3.79
4113 4264 4.832248 AGAACATGGTAAGAATGCTTCGA 58.168 39.130 0.00 0.00 35.56 3.71
4114 4265 4.872691 AGAACATGGTAAGAATGCTTCGAG 59.127 41.667 0.00 0.00 35.56 4.04
4115 4266 3.535561 ACATGGTAAGAATGCTTCGAGG 58.464 45.455 0.00 0.00 35.56 4.63
4116 4267 2.691409 TGGTAAGAATGCTTCGAGGG 57.309 50.000 0.00 0.00 35.56 4.30
4117 4268 1.300481 GGTAAGAATGCTTCGAGGGC 58.700 55.000 0.00 0.86 35.56 5.19
4118 4269 1.134371 GGTAAGAATGCTTCGAGGGCT 60.134 52.381 12.40 0.00 35.56 5.19
4119 4270 2.205911 GTAAGAATGCTTCGAGGGCTC 58.794 52.381 12.40 4.47 35.56 4.70
4162 4313 3.248029 CGCTGGAGTGCTGTGAAC 58.752 61.111 0.00 0.00 0.00 3.18
4163 4314 1.301244 CGCTGGAGTGCTGTGAACT 60.301 57.895 0.00 0.00 0.00 3.01
4164 4315 1.287730 CGCTGGAGTGCTGTGAACTC 61.288 60.000 0.00 0.00 42.79 3.01
4168 4319 2.919971 GAGTGCTGTGAACTCCCAC 58.080 57.895 0.00 0.00 38.50 4.61
4169 4320 0.946221 GAGTGCTGTGAACTCCCACG 60.946 60.000 0.00 0.00 38.50 4.94
4170 4321 2.280797 TGCTGTGAACTCCCACGC 60.281 61.111 0.00 0.00 39.80 5.34
4171 4322 2.280797 GCTGTGAACTCCCACGCA 60.281 61.111 0.00 0.00 39.80 5.24
4172 4323 2.320587 GCTGTGAACTCCCACGCAG 61.321 63.158 0.00 0.00 44.29 5.18
4173 4324 1.669115 CTGTGAACTCCCACGCAGG 60.669 63.158 0.00 0.00 39.84 4.85
4174 4325 2.099652 CTGTGAACTCCCACGCAGGA 62.100 60.000 0.00 0.00 41.22 3.86
4175 4326 1.668151 GTGAACTCCCACGCAGGAC 60.668 63.158 0.00 0.00 41.22 3.85
4186 4337 4.101448 GCAGGACGGATGGCAGGT 62.101 66.667 0.00 0.00 0.00 4.00
4187 4338 2.124983 CAGGACGGATGGCAGGTG 60.125 66.667 0.00 0.00 0.00 4.00
4188 4339 4.101448 AGGACGGATGGCAGGTGC 62.101 66.667 0.00 0.00 41.14 5.01
4190 4341 4.760047 GACGGATGGCAGGTGCGT 62.760 66.667 7.37 7.37 46.27 5.24
4191 4342 4.760047 ACGGATGGCAGGTGCGTC 62.760 66.667 1.64 0.00 39.46 5.19
4200 4351 4.456806 AGGTGCGTCCTGTTCAAC 57.543 55.556 0.00 0.00 46.19 3.18
4201 4352 1.830145 AGGTGCGTCCTGTTCAACT 59.170 52.632 0.00 0.00 46.19 3.16
4202 4353 0.180406 AGGTGCGTCCTGTTCAACTT 59.820 50.000 0.00 0.00 46.19 2.66
4203 4354 0.586802 GGTGCGTCCTGTTCAACTTC 59.413 55.000 0.00 0.00 0.00 3.01
4204 4355 0.232303 GTGCGTCCTGTTCAACTTCG 59.768 55.000 0.00 0.00 0.00 3.79
4205 4356 0.878523 TGCGTCCTGTTCAACTTCGG 60.879 55.000 0.00 0.00 0.00 4.30
4206 4357 1.860078 CGTCCTGTTCAACTTCGGC 59.140 57.895 0.00 0.00 0.00 5.54
4207 4358 1.860078 GTCCTGTTCAACTTCGGCG 59.140 57.895 0.00 0.00 0.00 6.46
4208 4359 0.599204 GTCCTGTTCAACTTCGGCGA 60.599 55.000 4.99 4.99 0.00 5.54
4209 4360 0.599204 TCCTGTTCAACTTCGGCGAC 60.599 55.000 10.16 0.00 0.00 5.19
4210 4361 0.600255 CCTGTTCAACTTCGGCGACT 60.600 55.000 10.16 0.00 0.00 4.18
4211 4362 0.784778 CTGTTCAACTTCGGCGACTC 59.215 55.000 10.16 0.00 0.00 3.36
4212 4363 0.103390 TGTTCAACTTCGGCGACTCA 59.897 50.000 10.16 0.00 0.00 3.41
4213 4364 1.214367 GTTCAACTTCGGCGACTCAA 58.786 50.000 10.16 0.00 0.00 3.02
4214 4365 1.595794 GTTCAACTTCGGCGACTCAAA 59.404 47.619 10.16 0.00 0.00 2.69
4215 4366 1.214367 TCAACTTCGGCGACTCAAAC 58.786 50.000 10.16 0.00 0.00 2.93
4216 4367 1.202486 TCAACTTCGGCGACTCAAACT 60.202 47.619 10.16 0.00 0.00 2.66
4217 4368 1.192534 CAACTTCGGCGACTCAAACTC 59.807 52.381 10.16 0.00 0.00 3.01
4218 4369 0.319641 ACTTCGGCGACTCAAACTCC 60.320 55.000 10.16 0.00 0.00 3.85
4219 4370 1.344942 CTTCGGCGACTCAAACTCCG 61.345 60.000 10.16 0.00 41.30 4.63
4220 4371 1.798234 TTCGGCGACTCAAACTCCGA 61.798 55.000 10.16 0.00 46.13 4.55
4221 4372 2.087009 CGGCGACTCAAACTCCGAC 61.087 63.158 0.00 0.00 42.43 4.79
4222 4373 1.006571 GGCGACTCAAACTCCGACA 60.007 57.895 0.00 0.00 0.00 4.35
4223 4374 1.282930 GGCGACTCAAACTCCGACAC 61.283 60.000 0.00 0.00 0.00 3.67
4224 4375 0.318784 GCGACTCAAACTCCGACACT 60.319 55.000 0.00 0.00 0.00 3.55
4225 4376 1.409412 CGACTCAAACTCCGACACTG 58.591 55.000 0.00 0.00 0.00 3.66
4226 4377 1.784525 GACTCAAACTCCGACACTGG 58.215 55.000 0.00 0.00 0.00 4.00
4227 4378 0.249911 ACTCAAACTCCGACACTGGC 60.250 55.000 0.00 0.00 0.00 4.85
4228 4379 0.034059 CTCAAACTCCGACACTGGCT 59.966 55.000 0.00 0.00 0.00 4.75
4229 4380 0.033504 TCAAACTCCGACACTGGCTC 59.966 55.000 0.00 0.00 0.00 4.70
4230 4381 0.951040 CAAACTCCGACACTGGCTCC 60.951 60.000 0.00 0.00 0.00 4.70
4231 4382 2.113243 AAACTCCGACACTGGCTCCC 62.113 60.000 0.00 0.00 0.00 4.30
4232 4383 2.681778 CTCCGACACTGGCTCCCT 60.682 66.667 0.00 0.00 0.00 4.20
4233 4384 2.680352 TCCGACACTGGCTCCCTC 60.680 66.667 0.00 0.00 0.00 4.30
4234 4385 3.775654 CCGACACTGGCTCCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
4235 4386 3.775654 CGACACTGGCTCCCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
4236 4387 2.284995 GACACTGGCTCCCTCCCT 60.285 66.667 0.00 0.00 0.00 4.20
4237 4388 2.608988 ACACTGGCTCCCTCCCTG 60.609 66.667 0.00 0.00 0.00 4.45
4238 4389 4.106925 CACTGGCTCCCTCCCTGC 62.107 72.222 0.00 0.00 0.00 4.85
4244 4395 4.860881 CTCCCTCCCTGCCGCCTA 62.861 72.222 0.00 0.00 0.00 3.93
4258 4409 1.359475 GCCTACGGCTTCTACCTCG 59.641 63.158 0.00 0.00 46.69 4.63
4259 4410 2.031360 CCTACGGCTTCTACCTCGG 58.969 63.158 0.00 0.00 0.00 4.63
4260 4411 1.359475 CTACGGCTTCTACCTCGGC 59.641 63.158 0.00 0.00 0.00 5.54
4261 4412 2.073037 CTACGGCTTCTACCTCGGCC 62.073 65.000 0.00 0.00 41.02 6.13
4262 4413 4.222847 CGGCTTCTACCTCGGCCC 62.223 72.222 0.00 0.00 41.35 5.80
4263 4414 4.222847 GGCTTCTACCTCGGCCCG 62.223 72.222 0.00 0.00 38.77 6.13
4264 4415 4.893601 GCTTCTACCTCGGCCCGC 62.894 72.222 0.00 0.00 0.00 6.13
4265 4416 4.222847 CTTCTACCTCGGCCCGCC 62.223 72.222 0.00 0.00 0.00 6.13
4287 4438 4.103103 GGCCGCCGCTTCTTCAAC 62.103 66.667 0.00 0.00 34.44 3.18
4288 4439 4.103103 GCCGCCGCTTCTTCAACC 62.103 66.667 0.00 0.00 0.00 3.77
4289 4440 3.788766 CCGCCGCTTCTTCAACCG 61.789 66.667 0.00 0.00 0.00 4.44
4290 4441 3.788766 CGCCGCTTCTTCAACCGG 61.789 66.667 0.00 0.00 43.38 5.28
4291 4442 2.358247 GCCGCTTCTTCAACCGGA 60.358 61.111 9.46 0.00 43.20 5.14
4292 4443 2.677979 GCCGCTTCTTCAACCGGAC 61.678 63.158 9.46 0.00 43.20 4.79
4293 4444 2.033194 CCGCTTCTTCAACCGGACC 61.033 63.158 9.46 0.00 43.20 4.46
4294 4445 1.301401 CGCTTCTTCAACCGGACCA 60.301 57.895 9.46 0.00 0.00 4.02
4295 4446 1.566018 CGCTTCTTCAACCGGACCAC 61.566 60.000 9.46 0.00 0.00 4.16
4296 4447 1.235281 GCTTCTTCAACCGGACCACC 61.235 60.000 9.46 0.00 0.00 4.61
4325 4476 3.537874 GGACGGCCGCCTCTACAT 61.538 66.667 28.58 1.54 0.00 2.29
4326 4477 2.027751 GACGGCCGCCTCTACATC 59.972 66.667 28.58 8.97 0.00 3.06
4327 4478 3.825833 GACGGCCGCCTCTACATCG 62.826 68.421 28.58 0.00 0.00 3.84
4328 4479 3.592814 CGGCCGCCTCTACATCGA 61.593 66.667 14.67 0.00 0.00 3.59
4329 4480 2.027751 GGCCGCCTCTACATCGAC 59.972 66.667 0.71 0.00 0.00 4.20
4330 4481 2.491022 GGCCGCCTCTACATCGACT 61.491 63.158 0.71 0.00 0.00 4.18
4331 4482 1.437986 GCCGCCTCTACATCGACTT 59.562 57.895 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 61 3.756783 CGGAGGAGAGGAGGGGGT 61.757 72.222 0.00 0.00 0.00 4.95
207 210 4.559862 ACCGGGATAGGATTGATTGATC 57.440 45.455 6.32 0.00 34.73 2.92
208 211 4.563580 CGAACCGGGATAGGATTGATTGAT 60.564 45.833 6.32 0.00 34.73 2.57
209 212 3.244078 CGAACCGGGATAGGATTGATTGA 60.244 47.826 6.32 0.00 34.73 2.57
210 213 3.067106 CGAACCGGGATAGGATTGATTG 58.933 50.000 6.32 0.00 34.73 2.67
211 214 2.038557 CCGAACCGGGATAGGATTGATT 59.961 50.000 6.32 0.00 44.15 2.57
212 215 1.623811 CCGAACCGGGATAGGATTGAT 59.376 52.381 6.32 0.00 44.15 2.57
213 216 1.045407 CCGAACCGGGATAGGATTGA 58.955 55.000 6.32 0.00 44.15 2.57
214 217 3.606886 CCGAACCGGGATAGGATTG 57.393 57.895 6.32 0.00 44.15 2.67
334 337 0.251916 ATCATCCGAAACGAGGGCAA 59.748 50.000 0.00 0.00 0.00 4.52
343 346 6.294286 GGAAAACAAACACCTATCATCCGAAA 60.294 38.462 0.00 0.00 0.00 3.46
377 380 0.540365 TTTGCAAGCCAGAAGAGGGG 60.540 55.000 0.00 0.00 0.00 4.79
378 381 1.331214 TTTTGCAAGCCAGAAGAGGG 58.669 50.000 0.00 0.00 0.00 4.30
418 421 4.379243 AACCCAGCAGAGGACGCG 62.379 66.667 3.53 3.53 0.00 6.01
441 445 4.227982 TCCAATCCAAGACATTCAGGATCA 59.772 41.667 0.00 0.00 39.86 2.92
511 516 2.196749 CGACACAATTCTCGATCCAGG 58.803 52.381 0.00 0.00 31.24 4.45
543 548 5.018149 TGCTTGGTACGGTAGGCATATATA 58.982 41.667 0.00 0.00 0.00 0.86
592 597 1.079405 CCACCGCTAGCTTCCGAAA 60.079 57.895 13.93 0.00 0.00 3.46
604 609 1.702491 GCAAACTCGATACCCACCGC 61.702 60.000 0.00 0.00 0.00 5.68
624 629 0.941463 GATCACGCAGGGCATACTCG 60.941 60.000 0.00 0.00 0.00 4.18
632 637 1.813513 AAAAGTCTGATCACGCAGGG 58.186 50.000 0.00 0.00 36.55 4.45
685 690 4.245660 CTCTCGTCACAAGCAGGAATTAA 58.754 43.478 0.00 0.00 0.00 1.40
692 697 0.668706 CCACCTCTCGTCACAAGCAG 60.669 60.000 0.00 0.00 0.00 4.24
693 698 1.112916 TCCACCTCTCGTCACAAGCA 61.113 55.000 0.00 0.00 0.00 3.91
766 773 0.611714 ATTTTACACTCCCGACGCCT 59.388 50.000 0.00 0.00 0.00 5.52
772 779 5.952526 AAGGTTGTAATTTTACACTCCCG 57.047 39.130 14.75 0.00 42.84 5.14
796 803 3.003482 GCTTGATAGGCTTGAAGATGCTG 59.997 47.826 0.00 0.00 0.00 4.41
797 804 3.212685 GCTTGATAGGCTTGAAGATGCT 58.787 45.455 0.00 0.00 0.00 3.79
798 805 2.947652 TGCTTGATAGGCTTGAAGATGC 59.052 45.455 0.00 0.00 0.00 3.91
799 806 5.769484 ATTGCTTGATAGGCTTGAAGATG 57.231 39.130 0.00 0.00 0.00 2.90
870 878 1.136305 TCGATCGCTTAAAGGAGGTGG 59.864 52.381 11.09 0.00 0.00 4.61
1122 1133 2.044492 AGTGGTCATCCAGTCTAGGGAA 59.956 50.000 0.00 0.00 43.23 3.97
1135 1146 7.255590 CCAAAAGACATAAAGTGAAGTGGTCAT 60.256 37.037 0.00 0.00 38.90 3.06
1148 1159 5.076182 TGATCACCTGCCAAAAGACATAAA 58.924 37.500 0.00 0.00 0.00 1.40
1313 1325 6.717289 AGGATTGCAATAACACCACTTACTA 58.283 36.000 12.97 0.00 0.00 1.82
1314 1326 5.570320 AGGATTGCAATAACACCACTTACT 58.430 37.500 12.97 0.00 0.00 2.24
1315 1327 5.648092 AGAGGATTGCAATAACACCACTTAC 59.352 40.000 12.97 0.00 0.00 2.34
1411 1423 3.534357 AATGACCCATTACCAACCACA 57.466 42.857 0.00 0.00 31.77 4.17
1777 1851 3.365868 GCATGCGTTGGTTCATCTTGTTA 60.366 43.478 0.00 0.00 0.00 2.41
1924 2000 8.432013 TGTATGCCAAAGATCTACATATCTGTT 58.568 33.333 0.00 0.00 36.34 3.16
2124 2200 6.033831 CGAAGTCACATAATTTCAATTGGTGC 59.966 38.462 5.42 1.40 36.15 5.01
2709 2786 7.095229 GCTTTGATTTGTGGGAATTTAAACTCC 60.095 37.037 7.17 7.17 0.00 3.85
2768 2845 4.864806 GCCTTAGAAGCAAATAAAACAGCC 59.135 41.667 0.00 0.00 0.00 4.85
3037 3123 5.882557 CCAACTGTATCAGGAAAGCAAGTAT 59.117 40.000 1.90 0.00 35.51 2.12
3181 3273 3.338249 ACATTTGATTAGTGCGAGTGCT 58.662 40.909 0.00 0.00 43.34 4.40
3187 3279 7.703328 AGGGTTATAAACATTTGATTAGTGCG 58.297 34.615 2.32 0.00 0.00 5.34
3259 3351 1.221566 CAGGATGTCCATCGGCACA 59.778 57.895 1.30 0.00 38.69 4.57
3336 3428 0.886490 AACTTCAAGCAGCCGTCTGG 60.886 55.000 0.00 0.00 40.65 3.86
3379 3471 3.077088 ACTCCTGGGGTTTCTAGTAGACA 59.923 47.826 0.00 0.00 0.00 3.41
3411 3503 1.337384 ATATCCCGTGTGGCTGCAGA 61.337 55.000 20.43 0.00 0.00 4.26
3482 3574 4.718961 CAGTAGGGGGAAAGAATACATGG 58.281 47.826 0.00 0.00 0.00 3.66
3529 3622 7.040617 TCGAAACACTTCTCATCTACTTACAGT 60.041 37.037 0.00 0.00 0.00 3.55
3688 3781 8.706035 CCAGATAGCAAAAATGAAAAACTTGAG 58.294 33.333 0.00 0.00 0.00 3.02
3701 3794 7.067615 TGTTCAGTTTGTACCAGATAGCAAAAA 59.932 33.333 0.00 0.00 33.43 1.94
3806 3957 1.823041 GAGAATGCAGGCCCTCAGC 60.823 63.158 0.00 0.00 42.60 4.26
3831 3982 3.374764 AGCCACACCTTTTCCTTCTTTT 58.625 40.909 0.00 0.00 0.00 2.27
3832 3983 3.032265 AGCCACACCTTTTCCTTCTTT 57.968 42.857 0.00 0.00 0.00 2.52
3833 3984 2.755952 AGCCACACCTTTTCCTTCTT 57.244 45.000 0.00 0.00 0.00 2.52
3834 3985 2.550208 CGTAGCCACACCTTTTCCTTCT 60.550 50.000 0.00 0.00 0.00 2.85
3835 3986 1.804748 CGTAGCCACACCTTTTCCTTC 59.195 52.381 0.00 0.00 0.00 3.46
3836 3987 1.892209 CGTAGCCACACCTTTTCCTT 58.108 50.000 0.00 0.00 0.00 3.36
3837 3988 3.625745 CGTAGCCACACCTTTTCCT 57.374 52.632 0.00 0.00 0.00 3.36
3851 4002 2.487532 CGAGTACCCCTGGGCGTAG 61.488 68.421 7.39 0.00 39.32 3.51
3852 4003 2.440796 CGAGTACCCCTGGGCGTA 60.441 66.667 7.39 8.55 39.32 4.42
3855 4006 3.851128 GAGCGAGTACCCCTGGGC 61.851 72.222 7.39 0.00 39.32 5.36
3856 4007 2.363795 TGAGCGAGTACCCCTGGG 60.364 66.667 5.50 5.50 42.03 4.45
3857 4008 1.668101 GACTGAGCGAGTACCCCTGG 61.668 65.000 0.00 0.00 33.83 4.45
3858 4009 1.668101 GGACTGAGCGAGTACCCCTG 61.668 65.000 0.00 0.00 33.83 4.45
3859 4010 1.380112 GGACTGAGCGAGTACCCCT 60.380 63.158 0.00 0.00 33.83 4.79
3860 4011 3.208335 GGACTGAGCGAGTACCCC 58.792 66.667 0.00 0.00 33.83 4.95
3863 4014 1.760192 TAAGGGGACTGAGCGAGTAC 58.240 55.000 0.00 0.00 42.68 2.73
3864 4015 2.584236 GATAAGGGGACTGAGCGAGTA 58.416 52.381 0.00 0.00 42.68 2.59
3865 4016 1.404843 GATAAGGGGACTGAGCGAGT 58.595 55.000 0.00 0.00 42.68 4.18
3866 4017 0.676736 GGATAAGGGGACTGAGCGAG 59.323 60.000 0.00 0.00 42.68 5.03
3867 4018 0.261991 AGGATAAGGGGACTGAGCGA 59.738 55.000 0.00 0.00 42.68 4.93
3868 4019 1.123928 AAGGATAAGGGGACTGAGCG 58.876 55.000 0.00 0.00 42.68 5.03
3869 4020 2.369203 GGTAAGGATAAGGGGACTGAGC 59.631 54.545 0.00 0.00 42.68 4.26
3870 4021 2.973406 GGGTAAGGATAAGGGGACTGAG 59.027 54.545 0.00 0.00 42.68 3.35
3871 4022 2.595380 AGGGTAAGGATAAGGGGACTGA 59.405 50.000 0.00 0.00 42.68 3.41
3872 4023 3.061909 AGGGTAAGGATAAGGGGACTG 57.938 52.381 0.00 0.00 42.68 3.51
3874 4025 2.442126 CCAAGGGTAAGGATAAGGGGAC 59.558 54.545 0.00 0.00 0.00 4.46
3875 4026 2.634009 CCCAAGGGTAAGGATAAGGGGA 60.634 54.545 0.00 0.00 34.97 4.81
3876 4027 1.780919 CCCAAGGGTAAGGATAAGGGG 59.219 57.143 0.00 0.00 0.00 4.79
3889 4040 0.929244 ATCTCCATGGAACCCAAGGG 59.071 55.000 17.00 2.91 42.11 3.95
3890 4041 1.475751 CGATCTCCATGGAACCCAAGG 60.476 57.143 17.00 1.92 43.08 3.61
3891 4042 1.486310 TCGATCTCCATGGAACCCAAG 59.514 52.381 17.00 2.72 36.95 3.61
3892 4043 1.578897 TCGATCTCCATGGAACCCAA 58.421 50.000 17.00 0.00 36.95 4.12
3893 4044 1.417517 CATCGATCTCCATGGAACCCA 59.582 52.381 17.00 0.08 38.19 4.51
3894 4045 1.694150 TCATCGATCTCCATGGAACCC 59.306 52.381 17.00 6.39 0.00 4.11
3895 4046 3.070159 TCTTCATCGATCTCCATGGAACC 59.930 47.826 17.00 6.75 0.00 3.62
3896 4047 4.054671 GTCTTCATCGATCTCCATGGAAC 58.945 47.826 17.00 9.31 0.00 3.62
3897 4048 3.706086 TGTCTTCATCGATCTCCATGGAA 59.294 43.478 17.00 7.48 0.00 3.53
3898 4049 3.299503 TGTCTTCATCGATCTCCATGGA 58.700 45.455 15.27 15.27 0.00 3.41
3899 4050 3.740631 TGTCTTCATCGATCTCCATGG 57.259 47.619 4.97 4.97 0.00 3.66
3900 4051 4.863689 GCTATGTCTTCATCGATCTCCATG 59.136 45.833 0.00 0.00 35.70 3.66
3901 4052 4.525874 TGCTATGTCTTCATCGATCTCCAT 59.474 41.667 0.00 0.00 35.70 3.41
3902 4053 3.891366 TGCTATGTCTTCATCGATCTCCA 59.109 43.478 0.00 0.00 35.70 3.86
3903 4054 4.511617 TGCTATGTCTTCATCGATCTCC 57.488 45.455 0.00 0.00 35.70 3.71
3904 4055 5.767269 TCTTGCTATGTCTTCATCGATCTC 58.233 41.667 0.00 0.00 35.70 2.75
3905 4056 5.781210 TCTTGCTATGTCTTCATCGATCT 57.219 39.130 0.00 0.00 35.70 2.75
3906 4057 6.212235 TCTTCTTGCTATGTCTTCATCGATC 58.788 40.000 0.00 0.00 35.70 3.69
3907 4058 6.154203 TCTTCTTGCTATGTCTTCATCGAT 57.846 37.500 0.00 0.00 35.70 3.59
3908 4059 5.582689 TCTTCTTGCTATGTCTTCATCGA 57.417 39.130 0.00 0.00 35.70 3.59
3909 4060 5.981915 TGATCTTCTTGCTATGTCTTCATCG 59.018 40.000 0.00 0.00 35.70 3.84
3910 4061 7.783090 TTGATCTTCTTGCTATGTCTTCATC 57.217 36.000 0.00 0.00 35.70 2.92
3911 4062 7.991460 TCATTGATCTTCTTGCTATGTCTTCAT 59.009 33.333 0.00 0.00 38.00 2.57
3912 4063 7.333323 TCATTGATCTTCTTGCTATGTCTTCA 58.667 34.615 0.00 0.00 0.00 3.02
3913 4064 7.783090 TCATTGATCTTCTTGCTATGTCTTC 57.217 36.000 0.00 0.00 0.00 2.87
3914 4065 8.457261 GTTTCATTGATCTTCTTGCTATGTCTT 58.543 33.333 0.00 0.00 0.00 3.01
3915 4066 7.066766 GGTTTCATTGATCTTCTTGCTATGTCT 59.933 37.037 0.00 0.00 0.00 3.41
3916 4067 7.066766 AGGTTTCATTGATCTTCTTGCTATGTC 59.933 37.037 0.00 0.00 0.00 3.06
3917 4068 6.888632 AGGTTTCATTGATCTTCTTGCTATGT 59.111 34.615 0.00 0.00 0.00 2.29
3918 4069 7.330900 AGGTTTCATTGATCTTCTTGCTATG 57.669 36.000 0.00 0.00 0.00 2.23
3919 4070 7.951347 AAGGTTTCATTGATCTTCTTGCTAT 57.049 32.000 0.00 0.00 0.00 2.97
3920 4071 7.765695 AAAGGTTTCATTGATCTTCTTGCTA 57.234 32.000 0.00 0.00 0.00 3.49
3921 4072 6.661304 AAAGGTTTCATTGATCTTCTTGCT 57.339 33.333 0.00 0.00 0.00 3.91
3922 4073 8.992835 AATAAAGGTTTCATTGATCTTCTTGC 57.007 30.769 0.00 0.00 0.00 4.01
3944 4095 9.890629 GACCAGCTGGATATAATCATACAAATA 57.109 33.333 39.19 0.00 38.94 1.40
3945 4096 8.385491 TGACCAGCTGGATATAATCATACAAAT 58.615 33.333 39.19 10.20 38.94 2.32
3946 4097 7.744733 TGACCAGCTGGATATAATCATACAAA 58.255 34.615 39.19 5.01 38.94 2.83
3947 4098 7.315066 TGACCAGCTGGATATAATCATACAA 57.685 36.000 39.19 5.74 38.94 2.41
3948 4099 6.933514 TGACCAGCTGGATATAATCATACA 57.066 37.500 39.19 15.78 38.94 2.29
3949 4100 8.097038 TCTTTGACCAGCTGGATATAATCATAC 58.903 37.037 39.19 13.72 38.94 2.39
3950 4101 8.206126 TCTTTGACCAGCTGGATATAATCATA 57.794 34.615 39.19 22.22 38.94 2.15
3951 4102 7.083062 TCTTTGACCAGCTGGATATAATCAT 57.917 36.000 39.19 13.54 38.94 2.45
3952 4103 6.499106 TCTTTGACCAGCTGGATATAATCA 57.501 37.500 39.19 26.28 38.94 2.57
3953 4104 7.148507 CGATTCTTTGACCAGCTGGATATAATC 60.149 40.741 39.19 29.45 38.94 1.75
3954 4105 6.652481 CGATTCTTTGACCAGCTGGATATAAT 59.348 38.462 39.19 25.59 38.94 1.28
3955 4106 5.991606 CGATTCTTTGACCAGCTGGATATAA 59.008 40.000 39.19 22.43 38.94 0.98
3956 4107 5.511373 CCGATTCTTTGACCAGCTGGATATA 60.511 44.000 39.19 19.31 38.94 0.86
3957 4108 4.384056 CGATTCTTTGACCAGCTGGATAT 58.616 43.478 39.19 17.78 38.94 1.63
3958 4109 3.432186 CCGATTCTTTGACCAGCTGGATA 60.432 47.826 39.19 23.18 38.94 2.59
3959 4110 2.636830 CGATTCTTTGACCAGCTGGAT 58.363 47.619 39.19 22.71 38.94 3.41
3960 4111 1.339055 CCGATTCTTTGACCAGCTGGA 60.339 52.381 39.19 15.70 38.94 3.86
3961 4112 1.089920 CCGATTCTTTGACCAGCTGG 58.910 55.000 31.60 31.60 42.17 4.85
3962 4113 1.813513 ACCGATTCTTTGACCAGCTG 58.186 50.000 6.78 6.78 0.00 4.24
3963 4114 2.154462 CAACCGATTCTTTGACCAGCT 58.846 47.619 0.00 0.00 0.00 4.24
3964 4115 2.095718 GTCAACCGATTCTTTGACCAGC 60.096 50.000 13.31 0.00 43.90 4.85
3965 4116 3.813529 GTCAACCGATTCTTTGACCAG 57.186 47.619 13.31 0.00 43.90 4.00
3990 4141 2.704065 TCTGGGTCGACTCTTCCTTTTT 59.296 45.455 17.97 0.00 0.00 1.94
3991 4142 2.037381 GTCTGGGTCGACTCTTCCTTTT 59.963 50.000 17.97 0.00 0.00 2.27
3992 4143 1.619332 GTCTGGGTCGACTCTTCCTTT 59.381 52.381 17.97 0.00 0.00 3.11
3993 4144 1.258676 GTCTGGGTCGACTCTTCCTT 58.741 55.000 17.97 0.00 0.00 3.36
3994 4145 0.112606 TGTCTGGGTCGACTCTTCCT 59.887 55.000 17.97 0.00 35.00 3.36
3995 4146 0.244178 GTGTCTGGGTCGACTCTTCC 59.756 60.000 17.97 9.33 35.00 3.46
3996 4147 0.244178 GGTGTCTGGGTCGACTCTTC 59.756 60.000 17.97 7.50 35.00 2.87
3997 4148 0.178958 AGGTGTCTGGGTCGACTCTT 60.179 55.000 17.97 0.00 35.00 2.85
3998 4149 0.697079 TAGGTGTCTGGGTCGACTCT 59.303 55.000 17.97 0.00 35.00 3.24
3999 4150 0.810016 GTAGGTGTCTGGGTCGACTC 59.190 60.000 16.46 12.99 35.00 3.36
4000 4151 0.111832 TGTAGGTGTCTGGGTCGACT 59.888 55.000 16.46 0.00 35.00 4.18
4001 4152 0.963962 TTGTAGGTGTCTGGGTCGAC 59.036 55.000 7.13 7.13 34.52 4.20
4002 4153 1.707106 TTTGTAGGTGTCTGGGTCGA 58.293 50.000 0.00 0.00 0.00 4.20
4003 4154 2.536761 TTTTGTAGGTGTCTGGGTCG 57.463 50.000 0.00 0.00 0.00 4.79
4004 4155 5.161943 ACTATTTTGTAGGTGTCTGGGTC 57.838 43.478 0.00 0.00 0.00 4.46
4005 4156 4.595781 TGACTATTTTGTAGGTGTCTGGGT 59.404 41.667 0.00 0.00 0.00 4.51
4006 4157 5.160607 TGACTATTTTGTAGGTGTCTGGG 57.839 43.478 0.00 0.00 0.00 4.45
4007 4158 6.231211 AGTTGACTATTTTGTAGGTGTCTGG 58.769 40.000 0.00 0.00 0.00 3.86
4008 4159 7.359264 CGAAGTTGACTATTTTGTAGGTGTCTG 60.359 40.741 0.00 0.00 0.00 3.51
4009 4160 6.645415 CGAAGTTGACTATTTTGTAGGTGTCT 59.355 38.462 0.00 0.00 0.00 3.41
4010 4161 6.128634 CCGAAGTTGACTATTTTGTAGGTGTC 60.129 42.308 0.00 0.00 0.00 3.67
4011 4162 5.699458 CCGAAGTTGACTATTTTGTAGGTGT 59.301 40.000 0.00 0.00 0.00 4.16
4012 4163 5.929992 TCCGAAGTTGACTATTTTGTAGGTG 59.070 40.000 0.00 0.00 0.00 4.00
4013 4164 6.105397 TCCGAAGTTGACTATTTTGTAGGT 57.895 37.500 0.00 0.00 0.00 3.08
4014 4165 5.581085 CCTCCGAAGTTGACTATTTTGTAGG 59.419 44.000 0.00 0.00 0.00 3.18
4015 4166 6.395629 TCCTCCGAAGTTGACTATTTTGTAG 58.604 40.000 0.00 0.00 0.00 2.74
4016 4167 6.349243 TCCTCCGAAGTTGACTATTTTGTA 57.651 37.500 0.00 0.00 0.00 2.41
4017 4168 5.223449 TCCTCCGAAGTTGACTATTTTGT 57.777 39.130 0.00 0.00 0.00 2.83
4018 4169 4.631813 CCTCCTCCGAAGTTGACTATTTTG 59.368 45.833 0.00 0.00 0.00 2.44
4019 4170 4.530946 TCCTCCTCCGAAGTTGACTATTTT 59.469 41.667 0.00 0.00 0.00 1.82
4020 4171 4.094476 TCCTCCTCCGAAGTTGACTATTT 58.906 43.478 0.00 0.00 0.00 1.40
4021 4172 3.709587 TCCTCCTCCGAAGTTGACTATT 58.290 45.455 0.00 0.00 0.00 1.73
4022 4173 3.383698 TCCTCCTCCGAAGTTGACTAT 57.616 47.619 0.00 0.00 0.00 2.12
4023 4174 2.893215 TCCTCCTCCGAAGTTGACTA 57.107 50.000 0.00 0.00 0.00 2.59
4024 4175 2.239681 ATCCTCCTCCGAAGTTGACT 57.760 50.000 0.00 0.00 0.00 3.41
4025 4176 3.181474 CCTTATCCTCCTCCGAAGTTGAC 60.181 52.174 0.00 0.00 0.00 3.18
4026 4177 3.031736 CCTTATCCTCCTCCGAAGTTGA 58.968 50.000 0.00 0.00 0.00 3.18
4027 4178 3.031736 TCCTTATCCTCCTCCGAAGTTG 58.968 50.000 0.00 0.00 0.00 3.16
4028 4179 3.399952 TCCTTATCCTCCTCCGAAGTT 57.600 47.619 0.00 0.00 0.00 2.66
4029 4180 3.399952 TTCCTTATCCTCCTCCGAAGT 57.600 47.619 0.00 0.00 0.00 3.01
4030 4181 3.491104 CGTTTCCTTATCCTCCTCCGAAG 60.491 52.174 0.00 0.00 0.00 3.79
4031 4182 2.429610 CGTTTCCTTATCCTCCTCCGAA 59.570 50.000 0.00 0.00 0.00 4.30
4032 4183 2.029623 CGTTTCCTTATCCTCCTCCGA 58.970 52.381 0.00 0.00 0.00 4.55
4033 4184 1.538419 GCGTTTCCTTATCCTCCTCCG 60.538 57.143 0.00 0.00 0.00 4.63
4034 4185 1.763545 AGCGTTTCCTTATCCTCCTCC 59.236 52.381 0.00 0.00 0.00 4.30
4035 4186 2.483889 CCAGCGTTTCCTTATCCTCCTC 60.484 54.545 0.00 0.00 0.00 3.71
4036 4187 1.486726 CCAGCGTTTCCTTATCCTCCT 59.513 52.381 0.00 0.00 0.00 3.69
4037 4188 1.485066 TCCAGCGTTTCCTTATCCTCC 59.515 52.381 0.00 0.00 0.00 4.30
4038 4189 2.827652 CTCCAGCGTTTCCTTATCCTC 58.172 52.381 0.00 0.00 0.00 3.71
4039 4190 1.134371 GCTCCAGCGTTTCCTTATCCT 60.134 52.381 0.00 0.00 0.00 3.24
4040 4191 1.300481 GCTCCAGCGTTTCCTTATCC 58.700 55.000 0.00 0.00 0.00 2.59
4041 4192 2.024176 TGCTCCAGCGTTTCCTTATC 57.976 50.000 0.00 0.00 45.83 1.75
4042 4193 2.290323 ACTTGCTCCAGCGTTTCCTTAT 60.290 45.455 0.00 0.00 45.83 1.73
4043 4194 1.071699 ACTTGCTCCAGCGTTTCCTTA 59.928 47.619 0.00 0.00 45.83 2.69
4044 4195 0.179018 ACTTGCTCCAGCGTTTCCTT 60.179 50.000 0.00 0.00 45.83 3.36
4045 4196 0.685097 TACTTGCTCCAGCGTTTCCT 59.315 50.000 0.00 0.00 45.83 3.36
4046 4197 1.079503 CTACTTGCTCCAGCGTTTCC 58.920 55.000 0.00 0.00 45.83 3.13
4047 4198 1.797025 ACTACTTGCTCCAGCGTTTC 58.203 50.000 0.00 0.00 45.83 2.78
4048 4199 1.873591 CAACTACTTGCTCCAGCGTTT 59.126 47.619 0.00 0.00 45.83 3.60
4049 4200 1.070134 TCAACTACTTGCTCCAGCGTT 59.930 47.619 0.00 0.00 45.83 4.84
4050 4201 0.679505 TCAACTACTTGCTCCAGCGT 59.320 50.000 0.00 0.00 45.83 5.07
4051 4202 1.067565 TCTCAACTACTTGCTCCAGCG 60.068 52.381 0.00 0.00 45.83 5.18
4052 4203 2.751166 TCTCAACTACTTGCTCCAGC 57.249 50.000 0.00 0.00 42.50 4.85
4053 4204 3.129462 TCGATCTCAACTACTTGCTCCAG 59.871 47.826 0.00 0.00 0.00 3.86
4054 4205 3.089284 TCGATCTCAACTACTTGCTCCA 58.911 45.455 0.00 0.00 0.00 3.86
4055 4206 3.784701 TCGATCTCAACTACTTGCTCC 57.215 47.619 0.00 0.00 0.00 4.70
4056 4207 3.549873 GCTTCGATCTCAACTACTTGCTC 59.450 47.826 0.00 0.00 0.00 4.26
4057 4208 3.194542 AGCTTCGATCTCAACTACTTGCT 59.805 43.478 0.00 0.00 0.00 3.91
4058 4209 3.305629 CAGCTTCGATCTCAACTACTTGC 59.694 47.826 0.00 0.00 0.00 4.01
4059 4210 4.738124 TCAGCTTCGATCTCAACTACTTG 58.262 43.478 0.00 0.00 0.00 3.16
4060 4211 5.590530 ATCAGCTTCGATCTCAACTACTT 57.409 39.130 0.00 0.00 0.00 2.24
4061 4212 5.590530 AATCAGCTTCGATCTCAACTACT 57.409 39.130 0.00 0.00 0.00 2.57
4062 4213 7.149047 CGATTAATCAGCTTCGATCTCAACTAC 60.149 40.741 15.57 0.00 33.59 2.73
4063 4214 6.858478 CGATTAATCAGCTTCGATCTCAACTA 59.142 38.462 15.57 0.00 33.59 2.24
4064 4215 5.689514 CGATTAATCAGCTTCGATCTCAACT 59.310 40.000 15.57 0.00 33.59 3.16
4065 4216 5.687730 TCGATTAATCAGCTTCGATCTCAAC 59.312 40.000 15.57 0.00 35.85 3.18
4066 4217 5.831997 TCGATTAATCAGCTTCGATCTCAA 58.168 37.500 15.57 0.00 35.85 3.02
4067 4218 5.239525 TCTCGATTAATCAGCTTCGATCTCA 59.760 40.000 15.57 0.00 39.59 3.27
4068 4219 5.694816 TCTCGATTAATCAGCTTCGATCTC 58.305 41.667 15.57 0.00 39.59 2.75
4069 4220 5.471797 TCTCTCGATTAATCAGCTTCGATCT 59.528 40.000 15.57 0.00 39.59 2.75
4070 4221 5.694816 TCTCTCGATTAATCAGCTTCGATC 58.305 41.667 15.57 0.00 39.59 3.69
4071 4222 5.697473 TCTCTCGATTAATCAGCTTCGAT 57.303 39.130 15.57 0.00 39.59 3.59
4072 4223 5.163652 TGTTCTCTCGATTAATCAGCTTCGA 60.164 40.000 15.57 5.86 38.20 3.71
4073 4224 5.037385 TGTTCTCTCGATTAATCAGCTTCG 58.963 41.667 15.57 2.02 0.00 3.79
4074 4225 6.073873 CCATGTTCTCTCGATTAATCAGCTTC 60.074 42.308 15.57 0.90 0.00 3.86
4075 4226 5.757320 CCATGTTCTCTCGATTAATCAGCTT 59.243 40.000 15.57 0.00 0.00 3.74
4076 4227 5.163364 ACCATGTTCTCTCGATTAATCAGCT 60.163 40.000 15.57 0.00 0.00 4.24
4077 4228 5.053145 ACCATGTTCTCTCGATTAATCAGC 58.947 41.667 15.57 0.00 0.00 4.26
4078 4229 8.138074 TCTTACCATGTTCTCTCGATTAATCAG 58.862 37.037 15.57 11.26 0.00 2.90
4079 4230 8.007405 TCTTACCATGTTCTCTCGATTAATCA 57.993 34.615 15.57 2.41 0.00 2.57
4080 4231 8.873215 TTCTTACCATGTTCTCTCGATTAATC 57.127 34.615 5.30 5.30 0.00 1.75
4081 4232 9.265901 CATTCTTACCATGTTCTCTCGATTAAT 57.734 33.333 0.00 0.00 0.00 1.40
4082 4233 7.224753 GCATTCTTACCATGTTCTCTCGATTAA 59.775 37.037 0.00 0.00 0.00 1.40
4083 4234 6.701841 GCATTCTTACCATGTTCTCTCGATTA 59.298 38.462 0.00 0.00 0.00 1.75
4084 4235 5.525378 GCATTCTTACCATGTTCTCTCGATT 59.475 40.000 0.00 0.00 0.00 3.34
4085 4236 5.053145 GCATTCTTACCATGTTCTCTCGAT 58.947 41.667 0.00 0.00 0.00 3.59
4086 4237 4.160439 AGCATTCTTACCATGTTCTCTCGA 59.840 41.667 0.00 0.00 0.00 4.04
4087 4238 4.437239 AGCATTCTTACCATGTTCTCTCG 58.563 43.478 0.00 0.00 0.00 4.04
4088 4239 5.006165 CGAAGCATTCTTACCATGTTCTCTC 59.994 44.000 0.00 0.00 44.75 3.20
4089 4240 4.872691 CGAAGCATTCTTACCATGTTCTCT 59.127 41.667 0.00 0.00 44.75 3.10
4090 4241 4.870426 TCGAAGCATTCTTACCATGTTCTC 59.130 41.667 0.00 0.00 44.75 2.87
4091 4242 4.832248 TCGAAGCATTCTTACCATGTTCT 58.168 39.130 0.00 0.00 44.75 3.01
4092 4243 4.034510 CCTCGAAGCATTCTTACCATGTTC 59.965 45.833 0.00 0.00 44.75 3.18
4093 4244 3.941483 CCTCGAAGCATTCTTACCATGTT 59.059 43.478 0.00 0.00 44.75 2.71
4094 4245 3.535561 CCTCGAAGCATTCTTACCATGT 58.464 45.455 0.00 0.00 44.75 3.21
4095 4246 2.874701 CCCTCGAAGCATTCTTACCATG 59.125 50.000 0.00 0.00 44.75 3.66
4096 4247 2.746472 GCCCTCGAAGCATTCTTACCAT 60.746 50.000 2.34 0.00 44.75 3.55
4097 4248 1.406887 GCCCTCGAAGCATTCTTACCA 60.407 52.381 2.34 0.00 44.75 3.25
4098 4249 1.134371 AGCCCTCGAAGCATTCTTACC 60.134 52.381 9.54 0.00 44.75 2.85
4099 4250 2.205911 GAGCCCTCGAAGCATTCTTAC 58.794 52.381 9.54 0.00 44.75 2.34
4100 4251 2.604046 GAGCCCTCGAAGCATTCTTA 57.396 50.000 9.54 0.00 44.75 2.10
4101 4252 3.467776 GAGCCCTCGAAGCATTCTT 57.532 52.632 9.54 0.00 44.75 2.52
4144 4295 2.666190 TTCACAGCACTCCAGCGC 60.666 61.111 0.00 0.00 40.15 5.92
4145 4296 1.287730 GAGTTCACAGCACTCCAGCG 61.288 60.000 0.00 0.00 40.15 5.18
4146 4297 2.537863 GAGTTCACAGCACTCCAGC 58.462 57.895 0.00 0.00 35.53 4.85
4150 4301 0.946221 CGTGGGAGTTCACAGCACTC 60.946 60.000 0.00 0.00 40.12 3.51
4151 4302 1.069765 CGTGGGAGTTCACAGCACT 59.930 57.895 0.00 0.00 37.50 4.40
4152 4303 2.607892 GCGTGGGAGTTCACAGCAC 61.608 63.158 0.00 0.00 37.50 4.40
4153 4304 2.280797 GCGTGGGAGTTCACAGCA 60.281 61.111 0.00 0.00 37.50 4.41
4154 4305 2.280797 TGCGTGGGAGTTCACAGC 60.281 61.111 0.00 0.00 37.50 4.40
4155 4306 1.669115 CCTGCGTGGGAGTTCACAG 60.669 63.158 0.00 0.00 37.50 3.66
4156 4307 2.137528 TCCTGCGTGGGAGTTCACA 61.138 57.895 0.00 0.00 37.50 3.58
4157 4308 1.668151 GTCCTGCGTGGGAGTTCAC 60.668 63.158 0.00 0.00 35.87 3.18
4158 4309 2.741092 GTCCTGCGTGGGAGTTCA 59.259 61.111 0.00 0.00 35.87 3.18
4159 4310 2.432628 CGTCCTGCGTGGGAGTTC 60.433 66.667 0.00 0.00 35.87 3.01
4160 4311 4.003788 CCGTCCTGCGTGGGAGTT 62.004 66.667 0.00 0.00 39.32 3.01
4161 4312 4.988716 TCCGTCCTGCGTGGGAGT 62.989 66.667 0.00 0.00 39.32 3.85
4162 4313 3.461773 ATCCGTCCTGCGTGGGAG 61.462 66.667 0.00 0.00 39.32 4.30
4163 4314 3.770040 CATCCGTCCTGCGTGGGA 61.770 66.667 0.00 0.00 39.32 4.37
4164 4315 4.838152 CCATCCGTCCTGCGTGGG 62.838 72.222 0.00 0.00 39.32 4.61
4166 4317 4.758251 TGCCATCCGTCCTGCGTG 62.758 66.667 0.00 0.00 39.32 5.34
4167 4318 4.457496 CTGCCATCCGTCCTGCGT 62.457 66.667 0.00 0.00 39.32 5.24
4169 4320 4.101448 ACCTGCCATCCGTCCTGC 62.101 66.667 0.00 0.00 0.00 4.85
4170 4321 2.124983 CACCTGCCATCCGTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
4171 4322 4.101448 GCACCTGCCATCCGTCCT 62.101 66.667 0.00 0.00 34.31 3.85
4173 4324 4.760047 ACGCACCTGCCATCCGTC 62.760 66.667 0.00 0.00 37.91 4.79
4174 4325 4.760047 GACGCACCTGCCATCCGT 62.760 66.667 0.00 0.00 37.91 4.69
4184 4335 0.586802 GAAGTTGAACAGGACGCACC 59.413 55.000 0.00 0.00 39.35 5.01
4185 4336 0.232303 CGAAGTTGAACAGGACGCAC 59.768 55.000 0.00 0.00 0.00 5.34
4186 4337 0.878523 CCGAAGTTGAACAGGACGCA 60.879 55.000 0.00 0.00 0.00 5.24
4187 4338 1.860078 CCGAAGTTGAACAGGACGC 59.140 57.895 0.00 0.00 0.00 5.19
4188 4339 1.860078 GCCGAAGTTGAACAGGACG 59.140 57.895 8.33 3.41 0.00 4.79
4189 4340 0.599204 TCGCCGAAGTTGAACAGGAC 60.599 55.000 8.33 0.77 0.00 3.85
4190 4341 0.599204 GTCGCCGAAGTTGAACAGGA 60.599 55.000 8.33 0.00 0.00 3.86
4191 4342 0.600255 AGTCGCCGAAGTTGAACAGG 60.600 55.000 0.00 0.00 0.00 4.00
4192 4343 0.784778 GAGTCGCCGAAGTTGAACAG 59.215 55.000 0.00 0.00 0.00 3.16
4193 4344 0.103390 TGAGTCGCCGAAGTTGAACA 59.897 50.000 0.00 0.00 0.00 3.18
4194 4345 1.214367 TTGAGTCGCCGAAGTTGAAC 58.786 50.000 0.00 0.00 0.00 3.18
4195 4346 1.595794 GTTTGAGTCGCCGAAGTTGAA 59.404 47.619 0.00 0.00 0.00 2.69
4196 4347 1.202486 AGTTTGAGTCGCCGAAGTTGA 60.202 47.619 0.00 0.00 0.00 3.18
4197 4348 1.192534 GAGTTTGAGTCGCCGAAGTTG 59.807 52.381 0.00 0.00 0.00 3.16
4198 4349 1.499049 GAGTTTGAGTCGCCGAAGTT 58.501 50.000 0.00 0.00 0.00 2.66
4199 4350 0.319641 GGAGTTTGAGTCGCCGAAGT 60.320 55.000 0.00 0.00 0.00 3.01
4200 4351 2.446341 GGAGTTTGAGTCGCCGAAG 58.554 57.895 0.00 0.00 0.00 3.79
4201 4352 4.667420 GGAGTTTGAGTCGCCGAA 57.333 55.556 0.00 0.00 0.00 4.30
4203 4354 2.087009 GTCGGAGTTTGAGTCGCCG 61.087 63.158 0.00 0.00 46.42 6.46
4204 4355 1.006571 TGTCGGAGTTTGAGTCGCC 60.007 57.895 0.00 0.00 0.00 5.54
4205 4356 0.318784 AGTGTCGGAGTTTGAGTCGC 60.319 55.000 0.00 0.00 0.00 5.19
4206 4357 1.409412 CAGTGTCGGAGTTTGAGTCG 58.591 55.000 0.00 0.00 0.00 4.18
4207 4358 1.784525 CCAGTGTCGGAGTTTGAGTC 58.215 55.000 0.00 0.00 0.00 3.36
4208 4359 0.249911 GCCAGTGTCGGAGTTTGAGT 60.250 55.000 0.00 0.00 0.00 3.41
4209 4360 0.034059 AGCCAGTGTCGGAGTTTGAG 59.966 55.000 0.00 0.00 0.00 3.02
4210 4361 0.033504 GAGCCAGTGTCGGAGTTTGA 59.966 55.000 0.00 0.00 0.00 2.69
4211 4362 0.951040 GGAGCCAGTGTCGGAGTTTG 60.951 60.000 0.00 0.00 0.00 2.93
4212 4363 1.371558 GGAGCCAGTGTCGGAGTTT 59.628 57.895 0.00 0.00 0.00 2.66
4213 4364 2.584391 GGGAGCCAGTGTCGGAGTT 61.584 63.158 0.00 0.00 0.00 3.01
4214 4365 2.997897 GGGAGCCAGTGTCGGAGT 60.998 66.667 0.00 0.00 0.00 3.85
4215 4366 2.681778 AGGGAGCCAGTGTCGGAG 60.682 66.667 0.00 0.00 0.00 4.63
4216 4367 2.680352 GAGGGAGCCAGTGTCGGA 60.680 66.667 0.00 0.00 0.00 4.55
4217 4368 3.775654 GGAGGGAGCCAGTGTCGG 61.776 72.222 0.00 0.00 0.00 4.79
4218 4369 3.775654 GGGAGGGAGCCAGTGTCG 61.776 72.222 0.00 0.00 0.00 4.35
4219 4370 2.284995 AGGGAGGGAGCCAGTGTC 60.285 66.667 0.00 0.00 0.00 3.67
4220 4371 2.608988 CAGGGAGGGAGCCAGTGT 60.609 66.667 0.00 0.00 0.00 3.55
4221 4372 4.106925 GCAGGGAGGGAGCCAGTG 62.107 72.222 0.00 0.00 0.00 3.66
4227 4378 4.860881 TAGGCGGCAGGGAGGGAG 62.861 72.222 13.08 0.00 0.00 4.30
4242 4393 1.359475 GCCGAGGTAGAAGCCGTAG 59.641 63.158 0.00 0.00 0.00 3.51
4243 4394 2.123428 GGCCGAGGTAGAAGCCGTA 61.123 63.158 0.00 0.00 35.30 4.02
4244 4395 3.459063 GGCCGAGGTAGAAGCCGT 61.459 66.667 0.00 0.00 35.30 5.68
4245 4396 4.222847 GGGCCGAGGTAGAAGCCG 62.223 72.222 0.00 0.00 46.75 5.52
4246 4397 4.222847 CGGGCCGAGGTAGAAGCC 62.223 72.222 24.41 0.00 44.99 4.35
4247 4398 4.893601 GCGGGCCGAGGTAGAAGC 62.894 72.222 33.44 3.90 0.00 3.86
4248 4399 4.222847 GGCGGGCCGAGGTAGAAG 62.223 72.222 33.44 0.00 0.00 2.85
4270 4421 4.103103 GTTGAAGAAGCGGCGGCC 62.103 66.667 13.24 9.54 41.24 6.13
4271 4422 4.103103 GGTTGAAGAAGCGGCGGC 62.103 66.667 9.78 8.43 40.37 6.53
4272 4423 3.788766 CGGTTGAAGAAGCGGCGG 61.789 66.667 9.78 0.00 46.84 6.13
4277 4428 1.235281 GGTGGTCCGGTTGAAGAAGC 61.235 60.000 0.00 0.00 0.00 3.86
4278 4429 2.928416 GGTGGTCCGGTTGAAGAAG 58.072 57.895 0.00 0.00 0.00 2.85
4308 4459 3.501458 GATGTAGAGGCGGCCGTCC 62.501 68.421 29.22 26.92 0.00 4.79
4309 4460 2.027751 GATGTAGAGGCGGCCGTC 59.972 66.667 25.39 25.39 0.00 4.79
4310 4461 3.900892 CGATGTAGAGGCGGCCGT 61.901 66.667 28.70 7.71 0.00 5.68
4311 4462 3.592814 TCGATGTAGAGGCGGCCG 61.593 66.667 24.05 24.05 0.00 6.13
4312 4463 2.017559 AAGTCGATGTAGAGGCGGCC 62.018 60.000 12.11 12.11 0.00 6.13
4313 4464 1.437986 AAGTCGATGTAGAGGCGGC 59.562 57.895 0.00 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.