Multiple sequence alignment - TraesCS1D01G079100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G079100 chr1D 100.000 4826 0 0 1 4826 61483550 61488375 0.000000e+00 8913
1 TraesCS1D01G079100 chr1D 97.753 89 2 0 4738 4826 53867449 53867537 2.330000e-33 154
2 TraesCS1D01G079100 chr1D 96.667 90 2 1 4737 4826 316302250 316302162 1.080000e-31 148
3 TraesCS1D01G079100 chr1B 95.305 2577 74 9 1714 4256 98167614 98170177 0.000000e+00 4045
4 TraesCS1D01G079100 chr1B 92.568 888 36 8 830 1710 98166387 98167251 0.000000e+00 1247
5 TraesCS1D01G079100 chr1B 93.066 274 16 2 527 799 98166118 98166389 9.730000e-107 398
6 TraesCS1D01G079100 chr1B 89.781 274 16 4 4257 4529 98170204 98170466 1.660000e-89 340
7 TraesCS1D01G079100 chr1B 90.608 181 9 5 2808 2988 243757721 243757893 2.900000e-57 233
8 TraesCS1D01G079100 chr1A 97.491 1953 45 4 1714 3665 59614268 59616217 0.000000e+00 3332
9 TraesCS1D01G079100 chr1A 88.442 969 48 24 771 1710 59612961 59613894 0.000000e+00 1110
10 TraesCS1D01G079100 chr1A 89.987 779 58 9 1 774 59610333 59611096 0.000000e+00 989
11 TraesCS1D01G079100 chr3A 90.789 304 28 0 3607 3910 247795229 247794926 1.620000e-109 407
12 TraesCS1D01G079100 chr3A 84.064 251 33 4 3923 4171 564332748 564332993 8.080000e-58 235
13 TraesCS1D01G079100 chr3A 81.860 215 15 9 1714 1928 248214187 248213997 5.000000e-35 159
14 TraesCS1D01G079100 chr7B 92.265 181 14 0 2808 2988 312427260 312427440 1.720000e-64 257
15 TraesCS1D01G079100 chr7B 91.160 181 12 4 2808 2988 379919855 379920031 4.830000e-60 243
16 TraesCS1D01G079100 chr6A 92.265 181 13 1 2808 2988 222568611 222568790 6.200000e-64 255
17 TraesCS1D01G079100 chr4D 92.222 180 14 0 2808 2987 286960775 286960954 6.200000e-64 255
18 TraesCS1D01G079100 chr4D 84.064 251 34 3 3923 4171 221737124 221737370 2.250000e-58 237
19 TraesCS1D01G079100 chr4D 83.594 256 36 3 3921 4174 422694288 422694037 8.080000e-58 235
20 TraesCS1D01G079100 chr5A 85.965 228 30 2 3946 4171 164274284 164274511 4.830000e-60 243
21 TraesCS1D01G079100 chr2A 90.556 180 17 0 2808 2987 138874916 138875095 6.240000e-59 239
22 TraesCS1D01G079100 chr7A 84.064 251 34 3 3923 4171 39552711 39552957 2.250000e-58 237
23 TraesCS1D01G079100 chr6B 85.281 231 32 2 3946 4174 286494729 286494499 2.250000e-58 237
24 TraesCS1D01G079100 chr4B 90.608 181 13 4 2808 2988 207149136 207149312 2.250000e-58 237
25 TraesCS1D01G079100 chr5D 83.594 256 36 3 3921 4174 296701169 296700918 8.080000e-58 235
26 TraesCS1D01G079100 chrUn 83.730 252 33 6 3923 4171 201789733 201789979 1.040000e-56 231
27 TraesCS1D01G079100 chr2D 96.703 91 1 1 4738 4826 478107892 478107802 3.010000e-32 150
28 TraesCS1D01G079100 chr2D 94.382 89 5 0 4738 4826 542247855 542247943 2.340000e-28 137
29 TraesCS1D01G079100 chr6D 96.629 89 2 1 4738 4826 464217344 464217431 3.890000e-31 147
30 TraesCS1D01G079100 chr7D 94.565 92 5 0 4735 4826 500285395 500285486 5.030000e-30 143
31 TraesCS1D01G079100 chr7D 96.552 87 1 2 4738 4823 575689931 575690016 5.030000e-30 143
32 TraesCS1D01G079100 chr3D 95.556 90 3 1 4737 4826 463690422 463690510 5.030000e-30 143
33 TraesCS1D01G079100 chr3D 92.473 93 5 2 4735 4826 451374059 451374150 1.090000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G079100 chr1D 61483550 61488375 4825 False 8913.000000 8913 100.000000 1 4826 1 chr1D.!!$F2 4825
1 TraesCS1D01G079100 chr1B 98166118 98170466 4348 False 1507.500000 4045 92.680000 527 4529 4 chr1B.!!$F2 4002
2 TraesCS1D01G079100 chr1A 59610333 59616217 5884 False 1810.333333 3332 91.973333 1 3665 3 chr1A.!!$F1 3664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 533 0.109781 GTGGCAGTTAATGTGTGGCG 60.110 55.0 0.00 0.00 39.54 5.69 F
1375 3286 0.030908 CGTGCTCTCCCCGTAAGATC 59.969 60.0 0.00 0.00 43.02 2.75 F
1557 3472 0.099968 TCGGACGCTAGAATGGAACG 59.900 55.0 0.00 0.00 0.00 3.95 F
1577 3492 0.238289 ACATTCAGCGAACCAAAGCG 59.762 50.0 0.00 0.00 38.61 4.68 F
3402 5695 0.251698 TGGGAATGAATGCTGCACCA 60.252 50.0 3.57 6.76 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 3522 0.233848 CGTTACCTGTTGTTGGCGAC 59.766 55.000 0.00 0.00 0.00 5.19 R
3372 5665 0.106868 TCATTCCCATGCAGCTGAGG 60.107 55.000 20.43 15.31 0.00 3.86 R
3483 5776 1.177895 TGAAGCAAAATGGCGAGGCA 61.178 50.000 0.88 0.88 39.27 4.75 R
3548 5841 3.616076 GCTCTCTCTACTTGCAAGCTCAA 60.616 47.826 26.27 8.62 0.00 3.02 R
4734 7084 0.109597 GCCAAATCACCGCACTCAAG 60.110 55.000 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 171 5.920193 TTTGAAATTTCTAGCCTCCATGG 57.080 39.130 18.64 4.97 39.35 3.66
195 199 3.321682 CCAAGCAAAAATCAACTCCCTCA 59.678 43.478 0.00 0.00 0.00 3.86
217 221 6.300703 TCACCCTTCTTTTCTTATTCGGAAA 58.699 36.000 0.00 0.00 0.00 3.13
218 222 6.206048 TCACCCTTCTTTTCTTATTCGGAAAC 59.794 38.462 0.00 0.00 33.22 2.78
220 224 6.719829 ACCCTTCTTTTCTTATTCGGAAACAT 59.280 34.615 0.00 0.00 33.22 2.71
234 238 3.427528 CGGAAACATCGTACCGATTATGG 59.572 47.826 0.00 0.00 44.59 2.74
254 258 1.062873 CACCGCATTTTTACGCACGG 61.063 55.000 0.00 0.00 45.86 4.94
258 262 2.476519 CCGCATTTTTACGCACGGTAAT 60.477 45.455 0.00 0.00 40.64 1.89
265 269 6.659361 TTTTTACGCACGGTAATAAGCATA 57.341 33.333 0.00 0.00 40.64 3.14
297 301 9.871238 TTTGTATTAGATCTTGTCTTAGTCACC 57.129 33.333 0.00 0.00 38.42 4.02
386 390 3.166657 GCTTTGACGCAGATCATGTTTC 58.833 45.455 0.00 0.00 0.00 2.78
387 391 3.120060 GCTTTGACGCAGATCATGTTTCT 60.120 43.478 0.00 0.00 0.00 2.52
388 392 4.645956 CTTTGACGCAGATCATGTTTCTC 58.354 43.478 0.00 0.00 0.00 2.87
389 393 3.599730 TGACGCAGATCATGTTTCTCT 57.400 42.857 0.00 0.00 0.00 3.10
390 394 3.515630 TGACGCAGATCATGTTTCTCTC 58.484 45.455 0.00 0.00 0.00 3.20
391 395 3.194329 TGACGCAGATCATGTTTCTCTCT 59.806 43.478 0.00 0.00 0.00 3.10
392 396 3.779759 ACGCAGATCATGTTTCTCTCTC 58.220 45.455 0.00 0.00 0.00 3.20
393 397 3.122297 CGCAGATCATGTTTCTCTCTCC 58.878 50.000 0.00 0.00 0.00 3.71
394 398 3.429960 CGCAGATCATGTTTCTCTCTCCA 60.430 47.826 0.00 0.00 0.00 3.86
395 399 3.870419 GCAGATCATGTTTCTCTCTCCAC 59.130 47.826 0.00 0.00 0.00 4.02
399 403 2.834549 TCATGTTTCTCTCTCCACCTCC 59.165 50.000 0.00 0.00 0.00 4.30
423 427 2.761208 CGGACACCTCCTAGTCATTTCT 59.239 50.000 0.00 0.00 36.50 2.52
426 430 4.382147 GGACACCTCCTAGTCATTTCTCAC 60.382 50.000 0.00 0.00 36.50 3.51
428 432 3.108376 ACCTCCTAGTCATTTCTCACCC 58.892 50.000 0.00 0.00 0.00 4.61
484 488 9.436957 CCTATACAGTTATGTTATCCCATGAAC 57.563 37.037 0.00 0.00 41.01 3.18
493 497 1.212375 ATCCCATGAACGGTCATCCA 58.788 50.000 14.41 0.00 42.88 3.41
494 498 0.251916 TCCCATGAACGGTCATCCAC 59.748 55.000 14.41 0.00 42.88 4.02
497 501 0.748005 CATGAACGGTCATCCACCCC 60.748 60.000 14.41 0.00 42.88 4.95
502 506 2.687566 GGTCATCCACCCCCGTCT 60.688 66.667 0.00 0.00 39.69 4.18
503 507 2.584608 GTCATCCACCCCCGTCTG 59.415 66.667 0.00 0.00 0.00 3.51
523 527 2.162681 GCTCCAAGTGGCAGTTAATGT 58.837 47.619 7.35 0.00 34.44 2.71
525 529 3.149196 CTCCAAGTGGCAGTTAATGTGT 58.851 45.455 7.35 0.00 34.44 3.72
529 533 0.109781 GTGGCAGTTAATGTGTGGCG 60.110 55.000 0.00 0.00 39.54 5.69
546 551 2.903357 GAGCCCCTGAAGCGATCA 59.097 61.111 0.00 0.00 36.38 2.92
624 629 1.228862 AAGCCCGCAAACCTCCAAT 60.229 52.632 0.00 0.00 0.00 3.16
644 649 1.474478 TCGTTTTGCTTCTGGTTTGCA 59.526 42.857 0.00 0.00 34.69 4.08
645 650 2.100584 TCGTTTTGCTTCTGGTTTGCAT 59.899 40.909 0.00 0.00 36.55 3.96
770 775 1.199624 CAAGTGTTGGCGCTGTTTTC 58.800 50.000 7.64 0.00 35.34 2.29
799 2674 5.413213 CCATATAAAGTGACCCAAACGACAA 59.587 40.000 0.00 0.00 0.00 3.18
800 2675 6.072397 CCATATAAAGTGACCCAAACGACAAA 60.072 38.462 0.00 0.00 0.00 2.83
801 2676 5.838531 ATAAAGTGACCCAAACGACAAAA 57.161 34.783 0.00 0.00 0.00 2.44
802 2677 4.729227 AAAGTGACCCAAACGACAAAAT 57.271 36.364 0.00 0.00 0.00 1.82
803 2678 5.838531 AAAGTGACCCAAACGACAAAATA 57.161 34.783 0.00 0.00 0.00 1.40
804 2679 6.399639 AAAGTGACCCAAACGACAAAATAT 57.600 33.333 0.00 0.00 0.00 1.28
805 2680 6.399639 AAGTGACCCAAACGACAAAATATT 57.600 33.333 0.00 0.00 0.00 1.28
921 2797 3.808036 CGGGTACGGAGGCAAATG 58.192 61.111 0.00 0.00 36.18 2.32
970 2846 0.181350 AGCAAAGGATCCTTAGGCCG 59.819 55.000 32.01 19.16 37.25 6.13
1036 2918 0.535102 CACAAGTTTCCGCCTCCACT 60.535 55.000 0.00 0.00 0.00 4.00
1037 2919 0.250338 ACAAGTTTCCGCCTCCACTC 60.250 55.000 0.00 0.00 0.00 3.51
1038 2920 0.250295 CAAGTTTCCGCCTCCACTCA 60.250 55.000 0.00 0.00 0.00 3.41
1039 2921 0.472471 AAGTTTCCGCCTCCACTCAA 59.528 50.000 0.00 0.00 0.00 3.02
1040 2922 0.250338 AGTTTCCGCCTCCACTCAAC 60.250 55.000 0.00 0.00 0.00 3.18
1041 2923 1.072505 TTTCCGCCTCCACTCAACC 59.927 57.895 0.00 0.00 0.00 3.77
1233 3123 1.511305 CGCCTAGACGCTTCCTTCA 59.489 57.895 0.00 0.00 0.00 3.02
1256 3146 1.612726 GCATCCACAAGAACAGCTCCT 60.613 52.381 0.00 0.00 0.00 3.69
1258 3148 0.687354 TCCACAAGAACAGCTCCTCC 59.313 55.000 0.00 0.00 0.00 4.30
1294 3203 4.273318 AGAAGACAGAAAAGGTTTGTGCT 58.727 39.130 0.00 0.00 0.00 4.40
1351 3260 0.729690 GTTCTCCGCTCAATTGCTCC 59.270 55.000 0.00 0.00 0.00 4.70
1375 3286 0.030908 CGTGCTCTCCCCGTAAGATC 59.969 60.000 0.00 0.00 43.02 2.75
1436 3351 2.706339 AGCTAGCTTTGTCCCTCATG 57.294 50.000 12.68 0.00 0.00 3.07
1542 3457 4.047059 GGAACGCCACGAGTCGGA 62.047 66.667 18.30 0.00 0.00 4.55
1543 3458 2.804090 GAACGCCACGAGTCGGAC 60.804 66.667 18.30 0.00 0.00 4.79
1544 3459 4.695231 AACGCCACGAGTCGGACG 62.695 66.667 18.30 18.37 0.00 4.79
1547 3462 3.807538 GCCACGAGTCGGACGCTA 61.808 66.667 18.30 0.00 0.00 4.26
1548 3463 2.403987 CCACGAGTCGGACGCTAG 59.596 66.667 18.30 2.44 0.00 3.42
1549 3464 2.104859 CCACGAGTCGGACGCTAGA 61.105 63.158 18.30 0.00 0.00 2.43
1550 3465 1.642037 CCACGAGTCGGACGCTAGAA 61.642 60.000 18.30 0.00 0.00 2.10
1551 3466 0.377554 CACGAGTCGGACGCTAGAAT 59.622 55.000 18.30 0.00 0.00 2.40
1552 3467 0.377554 ACGAGTCGGACGCTAGAATG 59.622 55.000 18.30 0.00 0.00 2.67
1553 3468 0.317103 CGAGTCGGACGCTAGAATGG 60.317 60.000 4.10 0.00 0.00 3.16
1554 3469 1.022735 GAGTCGGACGCTAGAATGGA 58.977 55.000 4.53 0.00 0.00 3.41
1555 3470 1.404391 GAGTCGGACGCTAGAATGGAA 59.596 52.381 4.53 0.00 0.00 3.53
1556 3471 1.134560 AGTCGGACGCTAGAATGGAAC 59.865 52.381 1.89 0.00 0.00 3.62
1557 3472 0.099968 TCGGACGCTAGAATGGAACG 59.900 55.000 0.00 0.00 0.00 3.95
1577 3492 0.238289 ACATTCAGCGAACCAAAGCG 59.762 50.000 0.00 0.00 38.61 4.68
1583 3498 2.308039 GCGAACCAAAGCGACGACT 61.308 57.895 0.00 0.00 0.00 4.18
1604 3519 2.831526 TGTGGATCTCGATTCCAACTCA 59.168 45.455 16.42 9.53 35.05 3.41
1607 3522 2.464865 GATCTCGATTCCAACTCACCG 58.535 52.381 0.00 0.00 0.00 4.94
1684 3599 0.971386 TTACCCGTCCAAGAGTCCAC 59.029 55.000 0.00 0.00 0.00 4.02
1686 3601 2.273179 CCCGTCCAAGAGTCCACGA 61.273 63.158 0.00 0.00 34.06 4.35
1710 3625 3.420482 CCTTCCCCCGGCCTGAAT 61.420 66.667 0.00 0.00 0.00 2.57
1711 3626 2.683475 CTTCCCCCGGCCTGAATT 59.317 61.111 0.00 0.00 0.00 2.17
1748 4039 7.434013 CCTTTCGCTTAGCTTTAAAAGAAACAA 59.566 33.333 14.93 0.00 0.00 2.83
1821 4112 2.365068 CGCACGAGTGACTTGTCCG 61.365 63.158 1.39 1.39 0.00 4.79
2408 4700 4.329256 CGAGTGATCGCCGTAGATCTTATA 59.671 45.833 0.00 0.00 45.35 0.98
2671 4963 4.338879 ACTTGCAAAATGATCCTAGCAGT 58.661 39.130 0.00 0.00 33.14 4.40
2750 5042 4.154918 GCTCCAGTACAGAAGATTGTTTGG 59.845 45.833 0.00 4.12 36.61 3.28
3113 5405 1.098050 GCACTGCTGTAAATGGAGGG 58.902 55.000 0.00 0.00 0.00 4.30
3372 5665 4.445545 CGCGTTCAAGCCGGCTTC 62.446 66.667 38.34 25.57 33.42 3.86
3399 5692 0.462375 GCATGGGAATGAATGCTGCA 59.538 50.000 4.13 4.13 44.64 4.41
3402 5695 0.251698 TGGGAATGAATGCTGCACCA 60.252 50.000 3.57 6.76 0.00 4.17
3412 5705 1.855295 TGCTGCACCAATGATCCAAT 58.145 45.000 0.00 0.00 0.00 3.16
3548 5841 6.493458 ACATAGGTTGCTAGGACATTTTGTTT 59.507 34.615 0.00 0.00 0.00 2.83
3738 6031 5.163622 CGGTTTGAAACAGCATAATGATCCT 60.164 40.000 10.53 0.00 0.00 3.24
3768 6061 1.787012 CAACTGCTGCATTTTGGGAC 58.213 50.000 1.31 0.00 0.00 4.46
3769 6062 0.314935 AACTGCTGCATTTTGGGACG 59.685 50.000 1.31 0.00 0.00 4.79
3780 6073 0.950836 TTTGGGACGATGTGTGCAAG 59.049 50.000 0.00 0.00 41.41 4.01
3823 6116 0.673437 AATCACCAACCTTGTTGCCG 59.327 50.000 1.46 0.00 0.00 5.69
3891 6204 5.645067 TCGTGAAGATGCTGATCATTTTCTT 59.355 36.000 11.73 11.73 43.14 2.52
3921 6234 1.071542 TCGGTGATCCTTTGCTTGTGA 59.928 47.619 0.00 0.00 0.00 3.58
3922 6235 1.879380 CGGTGATCCTTTGCTTGTGAA 59.121 47.619 0.00 0.00 0.00 3.18
3923 6236 2.350772 CGGTGATCCTTTGCTTGTGAAC 60.351 50.000 0.00 0.00 0.00 3.18
3924 6237 2.622942 GGTGATCCTTTGCTTGTGAACA 59.377 45.455 0.00 0.00 0.00 3.18
3925 6238 3.550842 GGTGATCCTTTGCTTGTGAACAC 60.551 47.826 0.00 0.00 31.91 3.32
3926 6239 3.066621 GTGATCCTTTGCTTGTGAACACA 59.933 43.478 3.39 3.39 39.98 3.72
3928 6241 1.748493 TCCTTTGCTTGTGAACACACC 59.252 47.619 7.16 3.03 41.67 4.16
3929 6242 1.202405 CCTTTGCTTGTGAACACACCC 60.202 52.381 7.16 2.70 41.67 4.61
3931 6244 1.999071 TTGCTTGTGAACACACCCGC 61.999 55.000 7.16 10.57 41.67 6.13
3932 6245 2.186826 GCTTGTGAACACACCCGCT 61.187 57.895 7.16 0.00 41.67 5.52
3948 6271 1.476833 CCGCTGGTTACTGGCCATTAT 60.477 52.381 5.51 0.00 35.19 1.28
3973 6296 2.439507 TGGCAGAATCTAGATTGGTCCC 59.560 50.000 22.61 15.79 0.00 4.46
3994 6317 5.128827 TCCCGCAGATCAATACTAGTCTTTT 59.871 40.000 0.00 0.00 0.00 2.27
3998 6321 6.754209 CGCAGATCAATACTAGTCTTTTCTGT 59.246 38.462 20.52 0.00 32.63 3.41
4008 6331 5.648092 ACTAGTCTTTTCTGTGCACTTTGTT 59.352 36.000 19.41 0.00 0.00 2.83
4012 6335 4.699735 TCTTTTCTGTGCACTTTGTTCTCA 59.300 37.500 19.41 0.00 0.00 3.27
4038 6361 3.340814 ACGCATCTGGAATCAACTTCT 57.659 42.857 0.00 0.00 34.08 2.85
4055 6378 1.464734 TCTCAGTCGGTCACTCATCC 58.535 55.000 0.00 0.00 30.26 3.51
4071 6394 4.142227 ACTCATCCTGAAATTGCTTCATGC 60.142 41.667 0.00 0.00 43.20 4.06
4078 6401 2.649331 AATTGCTTCATGCTGAGCAC 57.351 45.000 10.33 0.00 43.04 4.40
4091 6414 3.316588 TGCTGAGCACGTTTAATTTTGGA 59.683 39.130 1.40 0.00 31.71 3.53
4110 6433 0.250513 AGTTCTCCTGAATGGACGCC 59.749 55.000 0.00 0.00 40.56 5.68
4165 6488 7.956315 AGTAGTCTATCATCCCTAATAAGCCAA 59.044 37.037 0.00 0.00 0.00 4.52
4171 6494 5.809001 TCATCCCTAATAAGCCAAGCTATG 58.191 41.667 0.00 0.00 38.25 2.23
4174 6497 4.907875 TCCCTAATAAGCCAAGCTATGACT 59.092 41.667 0.00 0.00 38.25 3.41
4195 6518 3.352338 ATTGGACGCCGACGGTCTC 62.352 63.158 16.73 9.90 46.04 3.36
4212 6535 3.046087 CTCCTGCACTGTGCCGTG 61.046 66.667 28.17 17.86 44.23 4.94
4237 6560 3.557898 GCTCTTTCTCTCATTGGTGGTCA 60.558 47.826 0.00 0.00 0.00 4.02
4242 6565 1.808945 CTCTCATTGGTGGTCAAGCAC 59.191 52.381 3.77 3.77 38.95 4.40
4265 6614 3.681897 CAGGAATGGAGTCAGAAACGAAG 59.318 47.826 0.00 0.00 0.00 3.79
4271 6620 2.221981 GGAGTCAGAAACGAAGCAACAG 59.778 50.000 0.00 0.00 0.00 3.16
4323 6672 6.974048 TGGATTGCATGATCGAACAAATTAAG 59.026 34.615 0.00 0.00 0.00 1.85
4332 6681 7.671827 TGATCGAACAAATTAAGTGTGATACG 58.328 34.615 0.00 0.00 0.00 3.06
4346 6695 4.258935 GTGATACGCACAACTGGTATTG 57.741 45.455 0.00 0.00 46.91 1.90
4347 6696 3.063452 GTGATACGCACAACTGGTATTGG 59.937 47.826 0.00 0.00 46.91 3.16
4348 6697 2.102070 TACGCACAACTGGTATTGGG 57.898 50.000 0.00 0.00 35.97 4.12
4354 6703 1.000359 AACTGGTATTGGGCAGGGC 60.000 57.895 0.00 0.00 0.00 5.19
4371 6720 0.037975 GGCCCAAATGTCTTGCACAG 60.038 55.000 0.00 0.00 38.85 3.66
4374 6723 1.336517 CCCAAATGTCTTGCACAGCTG 60.337 52.381 13.48 13.48 38.85 4.24
4379 6728 0.740149 TGTCTTGCACAGCTGTTTGG 59.260 50.000 18.94 7.55 0.00 3.28
4385 6734 2.649190 TGCACAGCTGTTTGGTTAAGA 58.351 42.857 18.94 0.00 0.00 2.10
4391 6740 4.393062 ACAGCTGTTTGGTTAAGATGATCG 59.607 41.667 15.25 0.00 31.87 3.69
4465 6815 3.613737 CCAGCATTTATTTGCAAAGTCGG 59.386 43.478 18.19 7.09 45.23 4.79
4480 6830 1.101331 GTCGGTAGTTCCTCGTGGAT 58.899 55.000 7.11 0.00 42.81 3.41
4486 6836 0.324943 AGTTCCTCGTGGATTGGTGG 59.675 55.000 7.11 0.00 42.81 4.61
4512 6862 0.386113 GGTCAGGTATGAGGTCGCTC 59.614 60.000 0.00 0.00 35.66 5.03
4516 6866 1.102222 AGGTATGAGGTCGCTCGGTC 61.102 60.000 0.00 0.00 0.00 4.79
4529 6879 1.153449 TCGGTCGCATGGTCCATTC 60.153 57.895 0.00 0.00 0.00 2.67
4530 6880 1.449423 CGGTCGCATGGTCCATTCA 60.449 57.895 0.00 0.00 0.00 2.57
4531 6881 1.431488 CGGTCGCATGGTCCATTCAG 61.431 60.000 0.00 0.00 0.00 3.02
4532 6882 0.107703 GGTCGCATGGTCCATTCAGA 60.108 55.000 0.00 0.00 0.00 3.27
4533 6883 1.678728 GGTCGCATGGTCCATTCAGAA 60.679 52.381 0.00 0.00 0.00 3.02
4534 6884 2.083774 GTCGCATGGTCCATTCAGAAA 58.916 47.619 0.00 0.00 0.00 2.52
4535 6885 2.096496 GTCGCATGGTCCATTCAGAAAG 59.904 50.000 0.00 0.00 0.00 2.62
4536 6886 2.027285 TCGCATGGTCCATTCAGAAAGA 60.027 45.455 0.00 0.00 0.00 2.52
4537 6887 2.749076 CGCATGGTCCATTCAGAAAGAA 59.251 45.455 0.00 0.00 41.28 2.52
4550 6900 7.636150 ATTCAGAAAGAATGTAACATCAGGG 57.364 36.000 0.00 0.00 45.11 4.45
4551 6901 6.126863 TCAGAAAGAATGTAACATCAGGGT 57.873 37.500 0.00 0.00 0.00 4.34
4552 6902 5.939883 TCAGAAAGAATGTAACATCAGGGTG 59.060 40.000 0.00 0.00 0.00 4.61
4553 6903 5.707298 CAGAAAGAATGTAACATCAGGGTGT 59.293 40.000 0.00 0.00 0.00 4.16
4554 6904 6.207417 CAGAAAGAATGTAACATCAGGGTGTT 59.793 38.462 3.15 3.15 44.09 3.32
4555 6905 6.777580 AGAAAGAATGTAACATCAGGGTGTTT 59.222 34.615 2.90 0.00 42.08 2.83
4556 6906 5.964958 AGAATGTAACATCAGGGTGTTTG 57.035 39.130 2.90 0.00 42.08 2.93
4557 6907 5.630121 AGAATGTAACATCAGGGTGTTTGA 58.370 37.500 2.90 0.00 42.08 2.69
4558 6908 5.707298 AGAATGTAACATCAGGGTGTTTGAG 59.293 40.000 2.90 0.00 42.08 3.02
4559 6909 3.750371 TGTAACATCAGGGTGTTTGAGG 58.250 45.455 2.90 0.00 42.08 3.86
4560 6910 3.392947 TGTAACATCAGGGTGTTTGAGGA 59.607 43.478 2.90 0.00 42.08 3.71
4561 6911 3.814504 AACATCAGGGTGTTTGAGGAT 57.185 42.857 0.00 0.00 39.15 3.24
4562 6912 4.927267 AACATCAGGGTGTTTGAGGATA 57.073 40.909 0.00 0.00 39.15 2.59
4563 6913 5.456921 AACATCAGGGTGTTTGAGGATAT 57.543 39.130 0.00 0.00 39.15 1.63
4564 6914 4.785301 ACATCAGGGTGTTTGAGGATATG 58.215 43.478 0.00 0.00 31.31 1.78
4565 6915 3.281727 TCAGGGTGTTTGAGGATATGC 57.718 47.619 0.00 0.00 0.00 3.14
4566 6916 2.846206 TCAGGGTGTTTGAGGATATGCT 59.154 45.455 0.00 0.00 0.00 3.79
4567 6917 4.037222 TCAGGGTGTTTGAGGATATGCTA 58.963 43.478 0.00 0.00 0.00 3.49
4568 6918 4.130118 CAGGGTGTTTGAGGATATGCTAC 58.870 47.826 0.00 0.00 0.00 3.58
4569 6919 4.040755 AGGGTGTTTGAGGATATGCTACT 58.959 43.478 0.00 0.00 0.00 2.57
4570 6920 4.475016 AGGGTGTTTGAGGATATGCTACTT 59.525 41.667 0.00 0.00 0.00 2.24
4571 6921 5.044846 AGGGTGTTTGAGGATATGCTACTTT 60.045 40.000 0.00 0.00 0.00 2.66
4572 6922 5.297029 GGGTGTTTGAGGATATGCTACTTTC 59.703 44.000 0.00 0.00 0.00 2.62
4573 6923 5.880332 GGTGTTTGAGGATATGCTACTTTCA 59.120 40.000 0.00 0.00 0.00 2.69
4574 6924 6.037610 GGTGTTTGAGGATATGCTACTTTCAG 59.962 42.308 0.00 0.00 0.00 3.02
4575 6925 6.595716 GTGTTTGAGGATATGCTACTTTCAGT 59.404 38.462 0.00 0.00 0.00 3.41
4576 6926 7.119846 GTGTTTGAGGATATGCTACTTTCAGTT 59.880 37.037 0.00 0.00 0.00 3.16
4577 6927 7.119699 TGTTTGAGGATATGCTACTTTCAGTTG 59.880 37.037 0.00 0.00 0.00 3.16
4578 6928 6.299805 TGAGGATATGCTACTTTCAGTTGT 57.700 37.500 0.00 0.00 0.00 3.32
4579 6929 6.341316 TGAGGATATGCTACTTTCAGTTGTC 58.659 40.000 0.00 0.00 0.00 3.18
4580 6930 5.352284 AGGATATGCTACTTTCAGTTGTCG 58.648 41.667 0.00 0.00 0.00 4.35
4581 6931 5.105310 AGGATATGCTACTTTCAGTTGTCGT 60.105 40.000 0.00 0.00 0.00 4.34
4582 6932 5.581085 GGATATGCTACTTTCAGTTGTCGTT 59.419 40.000 0.00 0.00 0.00 3.85
4583 6933 6.092259 GGATATGCTACTTTCAGTTGTCGTTT 59.908 38.462 0.00 0.00 0.00 3.60
4584 6934 4.530094 TGCTACTTTCAGTTGTCGTTTG 57.470 40.909 0.00 0.00 0.00 2.93
4585 6935 4.185394 TGCTACTTTCAGTTGTCGTTTGA 58.815 39.130 0.00 0.00 0.00 2.69
4586 6936 4.632251 TGCTACTTTCAGTTGTCGTTTGAA 59.368 37.500 0.00 0.00 0.00 2.69
4587 6937 5.295787 TGCTACTTTCAGTTGTCGTTTGAAT 59.704 36.000 0.00 0.00 31.54 2.57
4588 6938 5.621228 GCTACTTTCAGTTGTCGTTTGAATG 59.379 40.000 0.00 0.00 34.21 2.67
4589 6939 4.920376 ACTTTCAGTTGTCGTTTGAATGG 58.080 39.130 0.00 0.00 33.04 3.16
4590 6940 4.398044 ACTTTCAGTTGTCGTTTGAATGGT 59.602 37.500 0.00 0.00 33.04 3.55
4591 6941 4.974368 TTCAGTTGTCGTTTGAATGGTT 57.026 36.364 0.00 0.00 0.00 3.67
4592 6942 4.545823 TCAGTTGTCGTTTGAATGGTTC 57.454 40.909 0.00 0.00 0.00 3.62
4593 6943 3.942115 TCAGTTGTCGTTTGAATGGTTCA 59.058 39.130 0.00 0.00 38.04 3.18
4594 6944 4.035017 CAGTTGTCGTTTGAATGGTTCAC 58.965 43.478 0.00 0.00 39.87 3.18
4595 6945 3.945285 AGTTGTCGTTTGAATGGTTCACT 59.055 39.130 0.00 0.00 39.87 3.41
4596 6946 4.398044 AGTTGTCGTTTGAATGGTTCACTT 59.602 37.500 0.00 0.00 39.87 3.16
4597 6947 5.587043 AGTTGTCGTTTGAATGGTTCACTTA 59.413 36.000 0.00 0.00 39.87 2.24
4598 6948 6.094325 AGTTGTCGTTTGAATGGTTCACTTAA 59.906 34.615 0.00 0.00 39.87 1.85
4599 6949 5.812652 TGTCGTTTGAATGGTTCACTTAAC 58.187 37.500 0.00 0.00 39.87 2.01
4600 6950 5.587043 TGTCGTTTGAATGGTTCACTTAACT 59.413 36.000 0.00 0.00 39.87 2.24
4601 6951 5.907391 GTCGTTTGAATGGTTCACTTAACTG 59.093 40.000 0.00 0.00 39.87 3.16
4602 6952 5.818336 TCGTTTGAATGGTTCACTTAACTGA 59.182 36.000 0.00 0.00 39.87 3.41
4603 6953 6.316640 TCGTTTGAATGGTTCACTTAACTGAA 59.683 34.615 0.00 0.00 39.87 3.02
4604 6954 6.632834 CGTTTGAATGGTTCACTTAACTGAAG 59.367 38.462 0.00 0.00 39.87 3.02
4605 6955 6.633500 TTGAATGGTTCACTTAACTGAAGG 57.367 37.500 0.00 0.00 39.87 3.46
4606 6956 5.690865 TGAATGGTTCACTTAACTGAAGGT 58.309 37.500 0.00 0.00 39.74 3.50
4607 6957 6.833041 TGAATGGTTCACTTAACTGAAGGTA 58.167 36.000 0.00 0.00 39.74 3.08
4608 6958 7.458397 TGAATGGTTCACTTAACTGAAGGTAT 58.542 34.615 0.00 0.00 39.74 2.73
4609 6959 7.390440 TGAATGGTTCACTTAACTGAAGGTATG 59.610 37.037 0.00 0.00 39.74 2.39
4610 6960 5.001232 TGGTTCACTTAACTGAAGGTATGC 58.999 41.667 0.00 0.00 39.74 3.14
4611 6961 5.221843 TGGTTCACTTAACTGAAGGTATGCT 60.222 40.000 0.00 0.00 39.74 3.79
4612 6962 6.014070 TGGTTCACTTAACTGAAGGTATGCTA 60.014 38.462 0.00 0.00 39.74 3.49
4613 6963 6.313164 GGTTCACTTAACTGAAGGTATGCTAC 59.687 42.308 0.00 0.00 39.74 3.58
4614 6964 6.313164 GTTCACTTAACTGAAGGTATGCTACC 59.687 42.308 4.67 4.67 40.90 3.18
4615 6965 8.007390 GTTCACTTAACTGAAGGTATGCTACCA 61.007 40.741 12.89 0.00 41.99 3.25
4628 6978 6.787085 GTATGCTACCATCAGTTAACCATC 57.213 41.667 0.88 0.00 32.85 3.51
4629 6979 3.792401 TGCTACCATCAGTTAACCATCG 58.208 45.455 0.88 0.00 0.00 3.84
4630 6980 2.544267 GCTACCATCAGTTAACCATCGC 59.456 50.000 0.88 0.00 0.00 4.58
4631 6981 3.741388 GCTACCATCAGTTAACCATCGCT 60.741 47.826 0.88 0.00 0.00 4.93
4632 6982 2.632377 ACCATCAGTTAACCATCGCTG 58.368 47.619 0.88 0.00 0.00 5.18
4647 6997 6.377327 CCATCGCTGGTTAATGTAATCTTT 57.623 37.500 0.00 0.00 37.79 2.52
4648 6998 6.201517 CCATCGCTGGTTAATGTAATCTTTG 58.798 40.000 0.00 0.00 37.79 2.77
4649 6999 5.811399 TCGCTGGTTAATGTAATCTTTGG 57.189 39.130 0.00 0.00 0.00 3.28
4650 7000 4.095782 TCGCTGGTTAATGTAATCTTTGGC 59.904 41.667 0.00 0.00 0.00 4.52
4651 7001 4.142491 CGCTGGTTAATGTAATCTTTGGCA 60.142 41.667 0.00 0.00 0.00 4.92
4652 7002 5.102313 GCTGGTTAATGTAATCTTTGGCAC 58.898 41.667 0.00 0.00 0.00 5.01
4653 7003 5.336372 GCTGGTTAATGTAATCTTTGGCACA 60.336 40.000 0.00 0.00 0.00 4.57
4654 7004 6.266168 TGGTTAATGTAATCTTTGGCACAG 57.734 37.500 0.00 0.00 42.39 3.66
4655 7005 5.102313 GGTTAATGTAATCTTTGGCACAGC 58.898 41.667 0.00 0.00 42.39 4.40
4656 7006 5.105756 GGTTAATGTAATCTTTGGCACAGCT 60.106 40.000 0.00 0.00 42.39 4.24
4657 7007 6.389906 GTTAATGTAATCTTTGGCACAGCTT 58.610 36.000 0.00 0.00 42.39 3.74
4658 7008 5.473066 AATGTAATCTTTGGCACAGCTTT 57.527 34.783 0.00 0.00 42.39 3.51
4659 7009 4.935352 TGTAATCTTTGGCACAGCTTTT 57.065 36.364 0.00 0.00 42.39 2.27
4660 7010 6.588719 ATGTAATCTTTGGCACAGCTTTTA 57.411 33.333 0.00 0.00 42.39 1.52
4661 7011 6.398234 TGTAATCTTTGGCACAGCTTTTAA 57.602 33.333 0.00 0.00 42.39 1.52
4662 7012 6.991938 TGTAATCTTTGGCACAGCTTTTAAT 58.008 32.000 0.00 0.00 42.39 1.40
4663 7013 6.867816 TGTAATCTTTGGCACAGCTTTTAATG 59.132 34.615 0.00 0.00 42.39 1.90
4664 7014 4.255833 TCTTTGGCACAGCTTTTAATGG 57.744 40.909 0.00 0.00 42.39 3.16
4665 7015 3.640967 TCTTTGGCACAGCTTTTAATGGT 59.359 39.130 0.00 0.00 42.39 3.55
4666 7016 4.100808 TCTTTGGCACAGCTTTTAATGGTT 59.899 37.500 0.00 0.00 42.39 3.67
4667 7017 3.658757 TGGCACAGCTTTTAATGGTTC 57.341 42.857 0.00 0.00 0.00 3.62
4668 7018 2.961741 TGGCACAGCTTTTAATGGTTCA 59.038 40.909 0.00 0.00 0.00 3.18
4669 7019 3.386078 TGGCACAGCTTTTAATGGTTCAA 59.614 39.130 0.00 0.00 0.00 2.69
4670 7020 3.989817 GGCACAGCTTTTAATGGTTCAAG 59.010 43.478 0.00 0.00 0.00 3.02
4671 7021 3.989817 GCACAGCTTTTAATGGTTCAAGG 59.010 43.478 0.00 0.00 0.00 3.61
4672 7022 3.989817 CACAGCTTTTAATGGTTCAAGGC 59.010 43.478 0.00 0.00 0.00 4.35
4673 7023 3.006859 ACAGCTTTTAATGGTTCAAGGCC 59.993 43.478 0.00 0.00 0.00 5.19
4674 7024 2.231235 AGCTTTTAATGGTTCAAGGCCG 59.769 45.455 0.00 0.00 0.00 6.13
4675 7025 2.673893 GCTTTTAATGGTTCAAGGCCGG 60.674 50.000 0.00 0.00 0.00 6.13
4676 7026 2.296073 TTTAATGGTTCAAGGCCGGT 57.704 45.000 1.90 0.00 0.00 5.28
4677 7027 1.540267 TTAATGGTTCAAGGCCGGTG 58.460 50.000 1.90 0.00 0.00 4.94
4678 7028 0.963355 TAATGGTTCAAGGCCGGTGC 60.963 55.000 1.90 0.00 0.00 5.01
4679 7029 2.713531 AATGGTTCAAGGCCGGTGCT 62.714 55.000 1.90 0.00 37.74 4.40
4680 7030 2.597510 GGTTCAAGGCCGGTGCTT 60.598 61.111 1.90 0.00 37.74 3.91
4681 7031 2.626780 GGTTCAAGGCCGGTGCTTC 61.627 63.158 1.90 0.00 37.74 3.86
4682 7032 2.668212 TTCAAGGCCGGTGCTTCG 60.668 61.111 1.90 0.00 37.74 3.79
4683 7033 3.469863 TTCAAGGCCGGTGCTTCGT 62.470 57.895 1.90 0.00 37.74 3.85
4684 7034 3.726517 CAAGGCCGGTGCTTCGTG 61.727 66.667 1.90 0.00 37.74 4.35
4688 7038 4.389576 GCCGGTGCTTCGTGCTTG 62.390 66.667 1.90 0.00 43.37 4.01
4689 7039 2.972505 CCGGTGCTTCGTGCTTGT 60.973 61.111 0.00 0.00 43.37 3.16
4690 7040 2.249309 CGGTGCTTCGTGCTTGTG 59.751 61.111 5.00 0.00 43.37 3.33
4691 7041 2.534019 CGGTGCTTCGTGCTTGTGT 61.534 57.895 5.00 0.00 43.37 3.72
4692 7042 1.218875 CGGTGCTTCGTGCTTGTGTA 61.219 55.000 5.00 0.00 43.37 2.90
4693 7043 1.156736 GGTGCTTCGTGCTTGTGTAT 58.843 50.000 5.00 0.00 43.37 2.29
4694 7044 1.135972 GGTGCTTCGTGCTTGTGTATG 60.136 52.381 5.00 0.00 43.37 2.39
4695 7045 1.531149 GTGCTTCGTGCTTGTGTATGT 59.469 47.619 5.00 0.00 43.37 2.29
4696 7046 1.798223 TGCTTCGTGCTTGTGTATGTC 59.202 47.619 5.00 0.00 43.37 3.06
4697 7047 2.069273 GCTTCGTGCTTGTGTATGTCT 58.931 47.619 0.00 0.00 38.95 3.41
4698 7048 2.159787 GCTTCGTGCTTGTGTATGTCTG 60.160 50.000 0.00 0.00 38.95 3.51
4699 7049 2.812358 TCGTGCTTGTGTATGTCTGT 57.188 45.000 0.00 0.00 0.00 3.41
4700 7050 3.106242 TCGTGCTTGTGTATGTCTGTT 57.894 42.857 0.00 0.00 0.00 3.16
4701 7051 3.057019 TCGTGCTTGTGTATGTCTGTTC 58.943 45.455 0.00 0.00 0.00 3.18
4702 7052 2.159973 CGTGCTTGTGTATGTCTGTTCG 60.160 50.000 0.00 0.00 0.00 3.95
4703 7053 3.057019 GTGCTTGTGTATGTCTGTTCGA 58.943 45.455 0.00 0.00 0.00 3.71
4704 7054 3.493129 GTGCTTGTGTATGTCTGTTCGAA 59.507 43.478 0.00 0.00 0.00 3.71
4705 7055 4.152402 GTGCTTGTGTATGTCTGTTCGAAT 59.848 41.667 0.00 0.00 0.00 3.34
4706 7056 5.347635 GTGCTTGTGTATGTCTGTTCGAATA 59.652 40.000 0.00 0.00 0.00 1.75
4707 7057 5.576774 TGCTTGTGTATGTCTGTTCGAATAG 59.423 40.000 15.16 15.16 0.00 1.73
4708 7058 5.005779 GCTTGTGTATGTCTGTTCGAATAGG 59.994 44.000 20.13 5.51 0.00 2.57
4709 7059 5.654603 TGTGTATGTCTGTTCGAATAGGT 57.345 39.130 20.13 10.33 0.00 3.08
4710 7060 6.032956 TGTGTATGTCTGTTCGAATAGGTT 57.967 37.500 20.13 9.09 0.00 3.50
4711 7061 6.460781 TGTGTATGTCTGTTCGAATAGGTTT 58.539 36.000 20.13 8.78 0.00 3.27
4712 7062 6.367695 TGTGTATGTCTGTTCGAATAGGTTTG 59.632 38.462 20.13 0.00 0.00 2.93
4713 7063 6.367969 GTGTATGTCTGTTCGAATAGGTTTGT 59.632 38.462 20.13 6.72 0.00 2.83
4714 7064 5.862924 ATGTCTGTTCGAATAGGTTTGTG 57.137 39.130 20.13 0.00 0.00 3.33
4715 7065 4.062293 TGTCTGTTCGAATAGGTTTGTGG 58.938 43.478 20.13 0.00 0.00 4.17
4716 7066 4.062991 GTCTGTTCGAATAGGTTTGTGGT 58.937 43.478 20.13 0.00 0.00 4.16
4717 7067 4.514066 GTCTGTTCGAATAGGTTTGTGGTT 59.486 41.667 20.13 0.00 0.00 3.67
4718 7068 5.008316 GTCTGTTCGAATAGGTTTGTGGTTT 59.992 40.000 20.13 0.00 0.00 3.27
4719 7069 5.008217 TCTGTTCGAATAGGTTTGTGGTTTG 59.992 40.000 20.13 0.00 0.00 2.93
4720 7070 4.641094 TGTTCGAATAGGTTTGTGGTTTGT 59.359 37.500 0.00 0.00 0.00 2.83
4721 7071 4.822036 TCGAATAGGTTTGTGGTTTGTG 57.178 40.909 0.00 0.00 0.00 3.33
4722 7072 4.200874 TCGAATAGGTTTGTGGTTTGTGT 58.799 39.130 0.00 0.00 0.00 3.72
4723 7073 4.641094 TCGAATAGGTTTGTGGTTTGTGTT 59.359 37.500 0.00 0.00 0.00 3.32
4724 7074 5.125739 TCGAATAGGTTTGTGGTTTGTGTTT 59.874 36.000 0.00 0.00 0.00 2.83
4725 7075 5.457473 CGAATAGGTTTGTGGTTTGTGTTTC 59.543 40.000 0.00 0.00 0.00 2.78
4726 7076 5.923733 ATAGGTTTGTGGTTTGTGTTTCA 57.076 34.783 0.00 0.00 0.00 2.69
4727 7077 4.608948 AGGTTTGTGGTTTGTGTTTCAA 57.391 36.364 0.00 0.00 0.00 2.69
4728 7078 4.311606 AGGTTTGTGGTTTGTGTTTCAAC 58.688 39.130 0.00 0.00 35.61 3.18
4729 7079 4.058817 GGTTTGTGGTTTGTGTTTCAACA 58.941 39.130 0.00 0.00 35.61 3.33
4730 7080 4.151512 GGTTTGTGGTTTGTGTTTCAACAG 59.848 41.667 0.00 0.00 40.05 3.16
4731 7081 4.592485 TTGTGGTTTGTGTTTCAACAGT 57.408 36.364 0.00 0.00 40.05 3.55
4732 7082 4.592485 TGTGGTTTGTGTTTCAACAGTT 57.408 36.364 0.00 0.00 40.05 3.16
4733 7083 4.551388 TGTGGTTTGTGTTTCAACAGTTC 58.449 39.130 0.00 0.00 40.05 3.01
4734 7084 3.924073 GTGGTTTGTGTTTCAACAGTTCC 59.076 43.478 0.00 0.00 40.05 3.62
4735 7085 3.829601 TGGTTTGTGTTTCAACAGTTCCT 59.170 39.130 0.00 0.00 40.05 3.36
4736 7086 4.282195 TGGTTTGTGTTTCAACAGTTCCTT 59.718 37.500 0.00 0.00 40.05 3.36
4737 7087 4.625311 GGTTTGTGTTTCAACAGTTCCTTG 59.375 41.667 0.00 0.00 40.05 3.61
4738 7088 5.465935 GTTTGTGTTTCAACAGTTCCTTGA 58.534 37.500 0.00 0.00 40.05 3.02
4739 7089 4.963276 TGTGTTTCAACAGTTCCTTGAG 57.037 40.909 0.00 0.00 40.05 3.02
4740 7090 4.331968 TGTGTTTCAACAGTTCCTTGAGT 58.668 39.130 0.00 0.00 40.05 3.41
4741 7091 4.155826 TGTGTTTCAACAGTTCCTTGAGTG 59.844 41.667 0.00 0.00 40.05 3.51
4742 7092 3.128589 TGTTTCAACAGTTCCTTGAGTGC 59.871 43.478 0.00 0.00 34.30 4.40
4743 7093 1.581934 TCAACAGTTCCTTGAGTGCG 58.418 50.000 0.00 0.00 0.00 5.34
4744 7094 0.588252 CAACAGTTCCTTGAGTGCGG 59.412 55.000 0.00 0.00 0.00 5.69
4745 7095 0.180406 AACAGTTCCTTGAGTGCGGT 59.820 50.000 0.00 0.00 0.00 5.68
4746 7096 0.532862 ACAGTTCCTTGAGTGCGGTG 60.533 55.000 0.00 0.00 0.00 4.94
4747 7097 0.249868 CAGTTCCTTGAGTGCGGTGA 60.250 55.000 0.00 0.00 0.00 4.02
4748 7098 0.687354 AGTTCCTTGAGTGCGGTGAT 59.313 50.000 0.00 0.00 0.00 3.06
4749 7099 1.072331 AGTTCCTTGAGTGCGGTGATT 59.928 47.619 0.00 0.00 0.00 2.57
4750 7100 1.880027 GTTCCTTGAGTGCGGTGATTT 59.120 47.619 0.00 0.00 0.00 2.17
4751 7101 1.522668 TCCTTGAGTGCGGTGATTTG 58.477 50.000 0.00 0.00 0.00 2.32
4752 7102 0.523072 CCTTGAGTGCGGTGATTTGG 59.477 55.000 0.00 0.00 0.00 3.28
4753 7103 0.109597 CTTGAGTGCGGTGATTTGGC 60.110 55.000 0.00 0.00 0.00 4.52
4754 7104 0.537143 TTGAGTGCGGTGATTTGGCT 60.537 50.000 0.00 0.00 0.00 4.75
4755 7105 0.955428 TGAGTGCGGTGATTTGGCTC 60.955 55.000 0.00 0.00 0.00 4.70
4756 7106 1.648467 GAGTGCGGTGATTTGGCTCC 61.648 60.000 0.00 0.00 0.00 4.70
4757 7107 2.361104 TGCGGTGATTTGGCTCCC 60.361 61.111 0.00 0.00 0.00 4.30
4758 7108 3.508840 GCGGTGATTTGGCTCCCG 61.509 66.667 0.00 0.00 41.50 5.14
4759 7109 2.824041 CGGTGATTTGGCTCCCGG 60.824 66.667 0.00 0.00 35.11 5.73
4760 7110 2.440247 GGTGATTTGGCTCCCGGG 60.440 66.667 16.85 16.85 0.00 5.73
4761 7111 3.140814 GTGATTTGGCTCCCGGGC 61.141 66.667 18.49 4.47 41.27 6.13
4762 7112 3.338250 TGATTTGGCTCCCGGGCT 61.338 61.111 18.49 0.00 41.48 5.19
4763 7113 2.517166 GATTTGGCTCCCGGGCTC 60.517 66.667 18.49 9.71 41.48 4.70
4764 7114 3.338250 ATTTGGCTCCCGGGCTCA 61.338 61.111 18.49 11.07 41.48 4.26
4765 7115 2.631012 GATTTGGCTCCCGGGCTCAT 62.631 60.000 18.49 0.87 41.48 2.90
4766 7116 2.631012 ATTTGGCTCCCGGGCTCATC 62.631 60.000 18.49 3.79 41.48 2.92
4767 7117 4.804420 TGGCTCCCGGGCTCATCT 62.804 66.667 18.49 0.00 41.48 2.90
4768 7118 4.247380 GGCTCCCGGGCTCATCTG 62.247 72.222 18.49 0.33 37.53 2.90
4769 7119 4.925861 GCTCCCGGGCTCATCTGC 62.926 72.222 18.49 7.22 0.00 4.26
4770 7120 3.473647 CTCCCGGGCTCATCTGCA 61.474 66.667 18.49 0.00 34.04 4.41
4771 7121 3.746949 CTCCCGGGCTCATCTGCAC 62.747 68.421 18.49 0.00 34.04 4.57
4772 7122 4.864334 CCCGGGCTCATCTGCACC 62.864 72.222 8.08 0.00 31.60 5.01
4773 7123 4.864334 CCGGGCTCATCTGCACCC 62.864 72.222 0.00 0.00 39.12 4.61
4778 7128 4.827087 CTCATCTGCACCCGCGCT 62.827 66.667 5.56 0.00 42.97 5.92
4779 7129 4.819761 TCATCTGCACCCGCGCTC 62.820 66.667 5.56 0.00 42.97 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 141 9.271828 GGAGGCTAGAAATTTCAAAAATTCAAA 57.728 29.630 19.99 0.00 31.76 2.69
142 144 8.876790 CATGGAGGCTAGAAATTTCAAAAATTC 58.123 33.333 19.99 9.70 0.00 2.17
161 163 2.123982 GCTTGGGCTCCATGGAGG 60.124 66.667 36.92 23.38 42.19 4.30
169 171 3.320626 GAGTTGATTTTTGCTTGGGCTC 58.679 45.455 0.00 0.00 39.59 4.70
195 199 6.066032 TGTTTCCGAATAAGAAAAGAAGGGT 58.934 36.000 0.00 0.00 35.13 4.34
234 238 1.661052 CGTGCGTAAAAATGCGGTGC 61.661 55.000 0.00 0.00 0.00 5.01
386 390 3.522731 CGCGGGAGGTGGAGAGAG 61.523 72.222 0.00 0.00 0.00 3.20
423 427 4.020543 AGTTGTTTAGCTTGTTTGGGTGA 58.979 39.130 0.00 0.00 0.00 4.02
463 467 5.123227 CCGTTCATGGGATAACATAACTGT 58.877 41.667 0.00 0.00 37.12 3.55
467 471 5.360649 TGACCGTTCATGGGATAACATAA 57.639 39.130 0.00 0.00 0.00 1.90
473 477 2.104111 GTGGATGACCGTTCATGGGATA 59.896 50.000 0.00 0.00 42.95 2.59
493 497 3.322466 CTTGGAGCAGACGGGGGT 61.322 66.667 0.00 0.00 0.00 4.95
494 498 3.322466 ACTTGGAGCAGACGGGGG 61.322 66.667 0.00 0.00 0.00 5.40
497 501 2.743928 GCCACTTGGAGCAGACGG 60.744 66.667 0.00 0.00 37.39 4.79
502 506 2.161855 CATTAACTGCCACTTGGAGCA 58.838 47.619 0.00 0.00 37.39 4.26
503 507 2.095059 CACATTAACTGCCACTTGGAGC 60.095 50.000 0.00 0.00 37.39 4.70
507 511 2.607771 GCCACACATTAACTGCCACTTG 60.608 50.000 0.00 0.00 0.00 3.16
523 527 4.020617 CTTCAGGGGCTCGCCACA 62.021 66.667 13.45 0.00 43.35 4.17
529 533 1.227497 CTGATCGCTTCAGGGGCTC 60.227 63.158 7.17 0.00 46.89 4.70
552 557 1.032114 GCCCCATCCAAAACTCTCGG 61.032 60.000 0.00 0.00 0.00 4.63
605 610 1.250840 ATTGGAGGTTTGCGGGCTTC 61.251 55.000 0.00 0.00 0.00 3.86
624 629 1.474478 TGCAAACCAGAAGCAAAACGA 59.526 42.857 0.00 0.00 34.97 3.85
644 649 3.053831 AGTCCGGACGTTCAAAATCAT 57.946 42.857 28.26 3.70 36.20 2.45
645 650 2.536761 AGTCCGGACGTTCAAAATCA 57.463 45.000 28.26 0.00 36.20 2.57
731 736 1.102154 CCTCCAATGGCGTGCATAAA 58.898 50.000 0.00 0.00 0.00 1.40
732 737 1.383456 GCCTCCAATGGCGTGCATAA 61.383 55.000 0.00 0.00 43.74 1.90
733 738 1.823470 GCCTCCAATGGCGTGCATA 60.823 57.895 0.00 0.00 43.74 3.14
754 759 2.989422 ATAGAAAACAGCGCCAACAC 57.011 45.000 2.29 0.00 0.00 3.32
770 775 8.145767 TCGTTTGGGTCACTTTATATGGTATAG 58.854 37.037 0.00 0.00 0.00 1.31
805 2680 4.650972 ACTAGCTGTGGTATCCCAAAAA 57.349 40.909 0.00 0.00 44.15 1.94
810 2685 4.439968 GTGTAAACTAGCTGTGGTATCCC 58.560 47.826 0.00 0.00 0.00 3.85
832 2707 1.679977 CCAAGCATCTGGTGGGTGG 60.680 63.158 0.00 0.00 32.02 4.61
913 2789 1.002134 CCTCCCACGTCATTTGCCT 60.002 57.895 0.00 0.00 0.00 4.75
921 2797 1.655329 CGCTCTATCCTCCCACGTC 59.345 63.158 0.00 0.00 0.00 4.34
1036 2918 0.689080 TGGGCCAAGCAAAAGGTTGA 60.689 50.000 2.13 0.00 36.83 3.18
1037 2919 0.249996 CTGGGCCAAGCAAAAGGTTG 60.250 55.000 8.04 0.75 37.83 3.77
1038 2920 2.043604 GCTGGGCCAAGCAAAAGGTT 62.044 55.000 28.20 0.00 43.01 3.50
1039 2921 2.510551 GCTGGGCCAAGCAAAAGGT 61.511 57.895 28.20 0.00 43.01 3.50
1040 2922 2.344872 GCTGGGCCAAGCAAAAGG 59.655 61.111 28.20 2.34 43.01 3.11
1041 2923 2.048877 CGCTGGGCCAAGCAAAAG 60.049 61.111 31.52 11.73 43.73 2.27
1233 3123 1.580845 GCTGTTCTTGTGGATGCGCT 61.581 55.000 9.73 0.00 0.00 5.92
1265 3174 2.431454 CTTTTCTGTCTTCTCCTGGGC 58.569 52.381 0.00 0.00 0.00 5.36
1375 3286 1.792006 AAACAAGCCTTACGGACGAG 58.208 50.000 0.00 0.00 0.00 4.18
1436 3351 3.202829 TCCCGGCAACTATATTTCCAC 57.797 47.619 0.00 0.00 0.00 4.02
1521 3436 3.310860 GACTCGTGGCGTTCCCCAT 62.311 63.158 0.00 0.00 37.20 4.00
1541 3456 2.273370 TGTCGTTCCATTCTAGCGTC 57.727 50.000 0.00 0.00 0.00 5.19
1542 3457 2.961526 ATGTCGTTCCATTCTAGCGT 57.038 45.000 0.00 0.00 0.00 5.07
1543 3458 3.186909 TGAATGTCGTTCCATTCTAGCG 58.813 45.455 18.69 0.00 47.00 4.26
1544 3459 3.001736 GCTGAATGTCGTTCCATTCTAGC 59.998 47.826 18.69 19.10 47.00 3.42
1545 3460 3.243877 CGCTGAATGTCGTTCCATTCTAG 59.756 47.826 18.69 15.75 47.00 2.43
1546 3461 3.119280 TCGCTGAATGTCGTTCCATTCTA 60.119 43.478 18.69 9.72 47.00 2.10
1547 3462 2.002586 CGCTGAATGTCGTTCCATTCT 58.997 47.619 18.69 0.00 47.00 2.40
1549 3464 2.093306 TCGCTGAATGTCGTTCCATT 57.907 45.000 2.30 0.00 37.74 3.16
1550 3465 1.732259 GTTCGCTGAATGTCGTTCCAT 59.268 47.619 2.30 0.00 35.91 3.41
1551 3466 1.144969 GTTCGCTGAATGTCGTTCCA 58.855 50.000 2.30 0.00 35.91 3.53
1552 3467 0.442699 GGTTCGCTGAATGTCGTTCC 59.557 55.000 2.30 0.00 35.91 3.62
1553 3468 1.144969 TGGTTCGCTGAATGTCGTTC 58.855 50.000 0.00 0.00 37.35 3.95
1554 3469 1.588674 TTGGTTCGCTGAATGTCGTT 58.411 45.000 0.00 0.00 0.00 3.85
1555 3470 1.531149 CTTTGGTTCGCTGAATGTCGT 59.469 47.619 0.00 0.00 0.00 4.34
1556 3471 1.725931 GCTTTGGTTCGCTGAATGTCG 60.726 52.381 0.00 0.00 0.00 4.35
1557 3472 1.725931 CGCTTTGGTTCGCTGAATGTC 60.726 52.381 0.00 0.00 0.00 3.06
1577 3492 2.541999 GGAATCGAGATCCACAGTCGTC 60.542 54.545 13.65 0.00 36.92 4.20
1583 3498 2.831526 TGAGTTGGAATCGAGATCCACA 59.168 45.455 19.33 12.87 46.37 4.17
1604 3519 2.030490 TACCTGTTGTTGGCGACGGT 62.030 55.000 7.26 7.26 38.49 4.83
1607 3522 0.233848 CGTTACCTGTTGTTGGCGAC 59.766 55.000 0.00 0.00 0.00 5.19
1684 3599 2.669240 GGGGGAAGGTGGAAGTCG 59.331 66.667 0.00 0.00 0.00 4.18
1686 3601 2.933834 CCGGGGGAAGGTGGAAGT 60.934 66.667 0.00 0.00 0.00 3.01
1821 4112 2.671596 TGCAAATAGCCGAGCAAAAAC 58.328 42.857 0.00 0.00 44.83 2.43
1909 4201 8.075574 TGTATGTCAGACAAGCAAATTTTGTAG 58.924 33.333 7.50 4.08 38.78 2.74
2045 4337 3.831323 TGCTCTGTCTTTTGATTCCCAA 58.169 40.909 0.00 0.00 0.00 4.12
2303 4595 3.626028 AGATGTCGTTTGTTTCCTTGC 57.374 42.857 0.00 0.00 0.00 4.01
2408 4700 3.238597 ACAAATGGGCTTACAACCATGT 58.761 40.909 0.00 0.00 46.38 3.21
2779 5071 9.639601 ACAAATTTTAGTTTAAGCCAGATAAGC 57.360 29.630 0.00 0.00 0.00 3.09
2800 5092 4.284234 ACCTCAGCCTGCAATTTAACAAAT 59.716 37.500 0.00 0.00 0.00 2.32
3372 5665 0.106868 TCATTCCCATGCAGCTGAGG 60.107 55.000 20.43 15.31 0.00 3.86
3399 5692 4.254039 TGGATGACATTGGATCATTGGT 57.746 40.909 0.00 0.00 36.92 3.67
3402 5695 3.576982 GGCATGGATGACATTGGATCATT 59.423 43.478 0.00 0.00 37.84 2.57
3483 5776 1.177895 TGAAGCAAAATGGCGAGGCA 61.178 50.000 0.88 0.88 39.27 4.75
3548 5841 3.616076 GCTCTCTCTACTTGCAAGCTCAA 60.616 47.826 26.27 8.62 0.00 3.02
3725 6018 5.498393 CTGGCTTATCAGGATCATTATGCT 58.502 41.667 0.00 0.00 33.38 3.79
3761 6054 0.950836 CTTGCACACATCGTCCCAAA 59.049 50.000 0.00 0.00 0.00 3.28
3762 6055 1.514678 GCTTGCACACATCGTCCCAA 61.515 55.000 0.00 0.00 0.00 4.12
3763 6056 1.965930 GCTTGCACACATCGTCCCA 60.966 57.895 0.00 0.00 0.00 4.37
3764 6057 2.690778 GGCTTGCACACATCGTCCC 61.691 63.158 0.00 0.00 0.00 4.46
3765 6058 0.391130 TAGGCTTGCACACATCGTCC 60.391 55.000 0.00 0.00 0.00 4.79
3766 6059 1.394917 CTTAGGCTTGCACACATCGTC 59.605 52.381 0.00 0.00 0.00 4.20
3767 6060 1.001974 TCTTAGGCTTGCACACATCGT 59.998 47.619 0.00 0.00 0.00 3.73
3768 6061 1.725641 TCTTAGGCTTGCACACATCG 58.274 50.000 0.00 0.00 0.00 3.84
3769 6062 4.708726 AAATCTTAGGCTTGCACACATC 57.291 40.909 0.00 0.00 0.00 3.06
3780 6073 5.011635 TCCAAAACCTCCAAAAATCTTAGGC 59.988 40.000 0.00 0.00 0.00 3.93
3815 6108 2.994990 GTGGAGTACACGGCAACAA 58.005 52.632 0.00 0.00 40.85 2.83
3891 6204 1.522092 GATCACCGAGCATCCCACA 59.478 57.895 0.00 0.00 0.00 4.17
3928 6241 0.107410 TAATGGCCAGTAACCAGCGG 60.107 55.000 11.19 0.00 41.46 5.52
3929 6242 1.967319 ATAATGGCCAGTAACCAGCG 58.033 50.000 18.13 0.00 41.46 5.18
3931 6244 3.885297 CAGGAATAATGGCCAGTAACCAG 59.115 47.826 28.50 21.64 41.46 4.00
3932 6245 3.372566 CCAGGAATAATGGCCAGTAACCA 60.373 47.826 28.50 8.85 42.61 3.67
3948 6271 3.782523 ACCAATCTAGATTCTGCCAGGAA 59.217 43.478 15.24 0.00 0.00 3.36
3962 6285 1.788229 TGATCTGCGGGACCAATCTA 58.212 50.000 0.00 0.00 0.00 1.98
3973 6296 6.754209 ACAGAAAAGACTAGTATTGATCTGCG 59.246 38.462 28.62 16.85 34.59 5.18
3994 6317 3.266510 AGTGAGAACAAAGTGCACAGA 57.733 42.857 21.04 0.00 32.16 3.41
3998 6321 3.308595 CGTACAAGTGAGAACAAAGTGCA 59.691 43.478 0.00 0.00 0.00 4.57
4008 6331 2.167662 TCCAGATGCGTACAAGTGAGA 58.832 47.619 0.00 0.00 0.00 3.27
4012 6335 3.610040 TGATTCCAGATGCGTACAAGT 57.390 42.857 0.00 0.00 0.00 3.16
4038 6361 1.177401 CAGGATGAGTGACCGACTGA 58.823 55.000 0.00 0.00 39.69 3.41
4071 6394 5.108385 ACTCCAAAATTAAACGTGCTCAG 57.892 39.130 0.00 0.00 0.00 3.35
4110 6433 6.966021 TCAACAAGGAATTTCTTCTTTACCG 58.034 36.000 0.00 0.00 30.26 4.02
4165 6488 1.202580 GCGTCCAATCCAGTCATAGCT 60.203 52.381 0.00 0.00 0.00 3.32
4171 6494 1.810030 GTCGGCGTCCAATCCAGTC 60.810 63.158 6.85 0.00 0.00 3.51
4174 6497 4.444838 CCGTCGGCGTCCAATCCA 62.445 66.667 9.28 0.00 36.15 3.41
4212 6535 2.419324 CACCAATGAGAGAAAGAGCTGC 59.581 50.000 0.00 0.00 0.00 5.25
4237 6560 1.004044 CTGACTCCATTCCTGGTGCTT 59.996 52.381 0.00 0.00 43.61 3.91
4242 6565 2.028112 TCGTTTCTGACTCCATTCCTGG 60.028 50.000 0.00 0.00 44.64 4.45
4243 6566 3.319137 TCGTTTCTGACTCCATTCCTG 57.681 47.619 0.00 0.00 0.00 3.86
4265 6614 6.534793 TGATTTTCCTTCAAAAACTCTGTTGC 59.465 34.615 0.00 0.00 37.52 4.17
4271 6620 8.877808 ACAGAATGATTTTCCTTCAAAAACTC 57.122 30.769 0.00 0.00 39.69 3.01
4332 6681 0.527565 CTGCCCAATACCAGTTGTGC 59.472 55.000 0.00 0.00 33.80 4.57
4348 6697 1.593265 CAAGACATTTGGGCCCTGC 59.407 57.895 25.70 9.38 0.00 4.85
4349 6698 1.186917 TGCAAGACATTTGGGCCCTG 61.187 55.000 25.70 16.21 0.00 4.45
4350 6699 1.155859 TGCAAGACATTTGGGCCCT 59.844 52.632 25.70 0.15 0.00 5.19
4354 6703 0.963962 AGCTGTGCAAGACATTTGGG 59.036 50.000 0.00 0.00 32.74 4.12
4371 6720 3.487544 GCCGATCATCTTAACCAAACAGC 60.488 47.826 0.00 0.00 0.00 4.40
4374 6723 4.034510 CAGAGCCGATCATCTTAACCAAAC 59.965 45.833 0.00 0.00 0.00 2.93
4379 6728 4.688021 AGAACAGAGCCGATCATCTTAAC 58.312 43.478 0.00 0.00 0.00 2.01
4385 6734 2.762887 TGAGAAGAACAGAGCCGATCAT 59.237 45.455 0.00 0.00 0.00 2.45
4391 6740 2.470983 AAGCTGAGAAGAACAGAGCC 57.529 50.000 0.00 0.00 37.54 4.70
4446 6796 5.399013 ACTACCGACTTTGCAAATAAATGC 58.601 37.500 13.23 0.00 46.58 3.56
4451 6801 4.901868 AGGAACTACCGACTTTGCAAATA 58.098 39.130 13.23 0.65 44.74 1.40
4480 6830 1.216678 ACCTGACCAAATGTCCACCAA 59.783 47.619 0.00 0.00 43.78 3.67
4486 6836 4.192317 GACCTCATACCTGACCAAATGTC 58.808 47.826 0.00 0.00 44.72 3.06
4499 6849 1.009900 CGACCGAGCGACCTCATAC 60.010 63.158 0.00 0.00 38.00 2.39
4512 6862 1.431488 CTGAATGGACCATGCGACCG 61.431 60.000 8.02 0.00 0.00 4.79
4516 6866 2.358957 TCTTTCTGAATGGACCATGCG 58.641 47.619 8.02 2.87 0.00 4.73
4529 6879 5.707298 ACACCCTGATGTTACATTCTTTCTG 59.293 40.000 0.00 0.00 0.00 3.02
4530 6880 5.880901 ACACCCTGATGTTACATTCTTTCT 58.119 37.500 0.00 0.00 0.00 2.52
4531 6881 6.575162 AACACCCTGATGTTACATTCTTTC 57.425 37.500 0.00 0.00 41.04 2.62
4532 6882 6.549364 TCAAACACCCTGATGTTACATTCTTT 59.451 34.615 0.00 0.00 42.01 2.52
4533 6883 6.068010 TCAAACACCCTGATGTTACATTCTT 58.932 36.000 0.00 0.00 42.01 2.52
4534 6884 5.630121 TCAAACACCCTGATGTTACATTCT 58.370 37.500 0.00 0.00 42.01 2.40
4535 6885 5.106157 CCTCAAACACCCTGATGTTACATTC 60.106 44.000 0.00 0.00 42.01 2.67
4536 6886 4.766891 CCTCAAACACCCTGATGTTACATT 59.233 41.667 0.00 0.00 42.01 2.71
4537 6887 4.042809 TCCTCAAACACCCTGATGTTACAT 59.957 41.667 0.00 0.00 42.01 2.29
4538 6888 3.392947 TCCTCAAACACCCTGATGTTACA 59.607 43.478 0.00 0.00 42.01 2.41
4539 6889 4.015872 TCCTCAAACACCCTGATGTTAC 57.984 45.455 0.00 0.00 42.01 2.50
4540 6890 4.927267 ATCCTCAAACACCCTGATGTTA 57.073 40.909 0.00 0.00 42.01 2.41
4541 6891 3.814504 ATCCTCAAACACCCTGATGTT 57.185 42.857 0.00 0.00 44.76 2.71
4542 6892 4.785301 CATATCCTCAAACACCCTGATGT 58.215 43.478 0.00 0.00 0.00 3.06
4543 6893 3.567164 GCATATCCTCAAACACCCTGATG 59.433 47.826 0.00 0.00 0.00 3.07
4544 6894 3.461085 AGCATATCCTCAAACACCCTGAT 59.539 43.478 0.00 0.00 0.00 2.90
4545 6895 2.846206 AGCATATCCTCAAACACCCTGA 59.154 45.455 0.00 0.00 0.00 3.86
4546 6896 3.287867 AGCATATCCTCAAACACCCTG 57.712 47.619 0.00 0.00 0.00 4.45
4547 6897 4.040755 AGTAGCATATCCTCAAACACCCT 58.959 43.478 0.00 0.00 0.00 4.34
4548 6898 4.423625 AGTAGCATATCCTCAAACACCC 57.576 45.455 0.00 0.00 0.00 4.61
4549 6899 5.880332 TGAAAGTAGCATATCCTCAAACACC 59.120 40.000 0.00 0.00 0.00 4.16
4550 6900 6.985188 TGAAAGTAGCATATCCTCAAACAC 57.015 37.500 0.00 0.00 0.00 3.32
4567 6917 9.176713 TGAACCATTCAAACGACAACTGAAAGT 62.177 37.037 0.00 0.00 43.65 2.66
4568 6918 4.920376 ACCATTCAAACGACAACTGAAAG 58.080 39.130 0.00 0.00 42.29 2.62
4569 6919 4.974368 ACCATTCAAACGACAACTGAAA 57.026 36.364 0.00 0.00 33.08 2.69
4570 6920 4.396478 TGAACCATTCAAACGACAACTGAA 59.604 37.500 0.00 0.00 36.59 3.02
4571 6921 3.942115 TGAACCATTCAAACGACAACTGA 59.058 39.130 0.00 0.00 36.59 3.41
4572 6922 4.035017 GTGAACCATTCAAACGACAACTG 58.965 43.478 0.00 0.00 42.15 3.16
4573 6923 3.945285 AGTGAACCATTCAAACGACAACT 59.055 39.130 0.00 0.00 42.15 3.16
4574 6924 4.287238 AGTGAACCATTCAAACGACAAC 57.713 40.909 0.00 0.00 42.15 3.32
4575 6925 4.974368 AAGTGAACCATTCAAACGACAA 57.026 36.364 0.00 0.00 42.15 3.18
4576 6926 5.587043 AGTTAAGTGAACCATTCAAACGACA 59.413 36.000 0.00 0.00 42.15 4.35
4577 6927 5.907391 CAGTTAAGTGAACCATTCAAACGAC 59.093 40.000 4.11 0.00 42.15 4.34
4578 6928 5.818336 TCAGTTAAGTGAACCATTCAAACGA 59.182 36.000 10.63 0.00 42.15 3.85
4579 6929 6.055231 TCAGTTAAGTGAACCATTCAAACG 57.945 37.500 10.63 0.00 42.15 3.60
4580 6930 6.918022 CCTTCAGTTAAGTGAACCATTCAAAC 59.082 38.462 19.59 0.00 42.15 2.93
4581 6931 6.605594 ACCTTCAGTTAAGTGAACCATTCAAA 59.394 34.615 19.59 0.00 42.15 2.69
4582 6932 6.126409 ACCTTCAGTTAAGTGAACCATTCAA 58.874 36.000 19.59 0.01 42.15 2.69
4583 6933 5.690865 ACCTTCAGTTAAGTGAACCATTCA 58.309 37.500 19.59 0.68 39.02 2.57
4584 6934 7.626452 GCATACCTTCAGTTAAGTGAACCATTC 60.626 40.741 19.59 6.26 39.02 2.67
4585 6935 6.151144 GCATACCTTCAGTTAAGTGAACCATT 59.849 38.462 19.59 8.34 39.02 3.16
4586 6936 5.648092 GCATACCTTCAGTTAAGTGAACCAT 59.352 40.000 19.59 11.05 39.02 3.55
4587 6937 5.001232 GCATACCTTCAGTTAAGTGAACCA 58.999 41.667 19.59 9.48 39.02 3.67
4588 6938 5.246307 AGCATACCTTCAGTTAAGTGAACC 58.754 41.667 19.59 6.38 39.02 3.62
4589 6939 7.292129 GTAGCATACCTTCAGTTAAGTGAAC 57.708 40.000 19.59 10.36 34.89 3.18
4605 6955 5.405571 CGATGGTTAACTGATGGTAGCATAC 59.594 44.000 7.54 1.01 42.04 2.39
4606 6956 5.538118 CGATGGTTAACTGATGGTAGCATA 58.462 41.667 7.54 0.00 28.47 3.14
4607 6957 4.380531 CGATGGTTAACTGATGGTAGCAT 58.619 43.478 7.23 7.23 30.25 3.79
4608 6958 3.792401 CGATGGTTAACTGATGGTAGCA 58.208 45.455 5.42 0.00 0.00 3.49
4609 6959 2.544267 GCGATGGTTAACTGATGGTAGC 59.456 50.000 5.42 0.00 0.00 3.58
4610 6960 3.804325 CAGCGATGGTTAACTGATGGTAG 59.196 47.826 5.42 0.00 31.67 3.18
4611 6961 3.431626 CCAGCGATGGTTAACTGATGGTA 60.432 47.826 12.68 0.00 31.67 3.25
4612 6962 2.632377 CAGCGATGGTTAACTGATGGT 58.368 47.619 5.42 0.00 31.67 3.55
4613 6963 1.942657 CCAGCGATGGTTAACTGATGG 59.057 52.381 12.68 7.87 31.67 3.51
4614 6964 2.632377 ACCAGCGATGGTTAACTGATG 58.368 47.619 22.02 2.75 39.57 3.07
4623 6973 5.036117 AGATTACATTAACCAGCGATGGT 57.964 39.130 22.02 22.02 45.55 3.55
4624 6974 6.201517 CAAAGATTACATTAACCAGCGATGG 58.798 40.000 20.26 20.26 0.00 3.51
4625 6975 6.201517 CCAAAGATTACATTAACCAGCGATG 58.798 40.000 0.00 0.00 0.00 3.84
4626 6976 5.221048 GCCAAAGATTACATTAACCAGCGAT 60.221 40.000 0.00 0.00 0.00 4.58
4627 6977 4.095782 GCCAAAGATTACATTAACCAGCGA 59.904 41.667 0.00 0.00 0.00 4.93
4628 6978 4.142491 TGCCAAAGATTACATTAACCAGCG 60.142 41.667 0.00 0.00 0.00 5.18
4629 6979 5.102313 GTGCCAAAGATTACATTAACCAGC 58.898 41.667 0.00 0.00 0.00 4.85
4630 6980 6.266168 TGTGCCAAAGATTACATTAACCAG 57.734 37.500 0.00 0.00 0.00 4.00
4631 6981 5.336372 GCTGTGCCAAAGATTACATTAACCA 60.336 40.000 0.00 0.00 0.00 3.67
4632 6982 5.102313 GCTGTGCCAAAGATTACATTAACC 58.898 41.667 0.00 0.00 0.00 2.85
4633 6983 5.954335 AGCTGTGCCAAAGATTACATTAAC 58.046 37.500 0.00 0.00 0.00 2.01
4634 6984 6.588719 AAGCTGTGCCAAAGATTACATTAA 57.411 33.333 0.00 0.00 0.00 1.40
4635 6985 6.588719 AAAGCTGTGCCAAAGATTACATTA 57.411 33.333 0.00 0.00 0.00 1.90
4636 6986 5.473066 AAAGCTGTGCCAAAGATTACATT 57.527 34.783 0.00 0.00 0.00 2.71
4637 6987 5.473066 AAAAGCTGTGCCAAAGATTACAT 57.527 34.783 0.00 0.00 0.00 2.29
4638 6988 4.935352 AAAAGCTGTGCCAAAGATTACA 57.065 36.364 0.00 0.00 0.00 2.41
4639 6989 6.311200 CCATTAAAAGCTGTGCCAAAGATTAC 59.689 38.462 0.00 0.00 0.00 1.89
4640 6990 6.014669 ACCATTAAAAGCTGTGCCAAAGATTA 60.015 34.615 0.00 0.00 0.00 1.75
4641 6991 5.221702 ACCATTAAAAGCTGTGCCAAAGATT 60.222 36.000 0.00 0.00 0.00 2.40
4642 6992 4.284234 ACCATTAAAAGCTGTGCCAAAGAT 59.716 37.500 0.00 0.00 0.00 2.40
4643 6993 3.640967 ACCATTAAAAGCTGTGCCAAAGA 59.359 39.130 0.00 0.00 0.00 2.52
4644 6994 3.993920 ACCATTAAAAGCTGTGCCAAAG 58.006 40.909 0.00 0.00 0.00 2.77
4645 6995 4.141846 TGAACCATTAAAAGCTGTGCCAAA 60.142 37.500 0.00 0.00 0.00 3.28
4646 6996 3.386078 TGAACCATTAAAAGCTGTGCCAA 59.614 39.130 0.00 0.00 0.00 4.52
4647 6997 2.961741 TGAACCATTAAAAGCTGTGCCA 59.038 40.909 0.00 0.00 0.00 4.92
4648 6998 3.658757 TGAACCATTAAAAGCTGTGCC 57.341 42.857 0.00 0.00 0.00 5.01
4649 6999 3.989817 CCTTGAACCATTAAAAGCTGTGC 59.010 43.478 0.00 0.00 0.00 4.57
4650 7000 3.989817 GCCTTGAACCATTAAAAGCTGTG 59.010 43.478 0.00 0.00 0.00 3.66
4651 7001 3.006859 GGCCTTGAACCATTAAAAGCTGT 59.993 43.478 0.00 0.00 0.00 4.40
4652 7002 3.588955 GGCCTTGAACCATTAAAAGCTG 58.411 45.455 0.00 0.00 0.00 4.24
4653 7003 2.231235 CGGCCTTGAACCATTAAAAGCT 59.769 45.455 0.00 0.00 0.00 3.74
4654 7004 2.606108 CGGCCTTGAACCATTAAAAGC 58.394 47.619 0.00 0.00 0.00 3.51
4655 7005 2.560981 ACCGGCCTTGAACCATTAAAAG 59.439 45.455 0.00 0.00 0.00 2.27
4656 7006 2.297597 CACCGGCCTTGAACCATTAAAA 59.702 45.455 0.00 0.00 0.00 1.52
4657 7007 1.889829 CACCGGCCTTGAACCATTAAA 59.110 47.619 0.00 0.00 0.00 1.52
4658 7008 1.540267 CACCGGCCTTGAACCATTAA 58.460 50.000 0.00 0.00 0.00 1.40
4659 7009 0.963355 GCACCGGCCTTGAACCATTA 60.963 55.000 0.00 0.00 0.00 1.90
4660 7010 2.275380 GCACCGGCCTTGAACCATT 61.275 57.895 0.00 0.00 0.00 3.16
4661 7011 2.676471 GCACCGGCCTTGAACCAT 60.676 61.111 0.00 0.00 0.00 3.55
4662 7012 3.429372 AAGCACCGGCCTTGAACCA 62.429 57.895 0.00 0.00 42.56 3.67
4663 7013 2.597510 AAGCACCGGCCTTGAACC 60.598 61.111 0.00 0.00 42.56 3.62
4664 7014 2.954611 GAAGCACCGGCCTTGAAC 59.045 61.111 12.22 0.00 42.56 3.18
4665 7015 2.668212 CGAAGCACCGGCCTTGAA 60.668 61.111 12.22 0.00 42.56 2.69
4666 7016 3.936203 ACGAAGCACCGGCCTTGA 61.936 61.111 12.22 0.00 42.56 3.02
4667 7017 3.726517 CACGAAGCACCGGCCTTG 61.727 66.667 12.22 0.00 42.56 3.61
4677 7027 2.069273 AGACATACACAAGCACGAAGC 58.931 47.619 0.00 0.00 46.19 3.86
4678 7028 3.059884 ACAGACATACACAAGCACGAAG 58.940 45.455 0.00 0.00 0.00 3.79
4679 7029 3.106242 ACAGACATACACAAGCACGAA 57.894 42.857 0.00 0.00 0.00 3.85
4680 7030 2.812358 ACAGACATACACAAGCACGA 57.188 45.000 0.00 0.00 0.00 4.35
4681 7031 2.159973 CGAACAGACATACACAAGCACG 60.160 50.000 0.00 0.00 0.00 5.34
4682 7032 3.057019 TCGAACAGACATACACAAGCAC 58.943 45.455 0.00 0.00 0.00 4.40
4683 7033 3.378911 TCGAACAGACATACACAAGCA 57.621 42.857 0.00 0.00 0.00 3.91
4684 7034 4.928661 ATTCGAACAGACATACACAAGC 57.071 40.909 0.00 0.00 0.00 4.01
4685 7035 6.100004 ACCTATTCGAACAGACATACACAAG 58.900 40.000 4.67 0.00 0.00 3.16
4686 7036 6.032956 ACCTATTCGAACAGACATACACAA 57.967 37.500 4.67 0.00 0.00 3.33
4687 7037 5.654603 ACCTATTCGAACAGACATACACA 57.345 39.130 4.67 0.00 0.00 3.72
4688 7038 6.367969 ACAAACCTATTCGAACAGACATACAC 59.632 38.462 4.67 0.00 0.00 2.90
4689 7039 6.367695 CACAAACCTATTCGAACAGACATACA 59.632 38.462 4.67 0.00 0.00 2.29
4690 7040 6.183360 CCACAAACCTATTCGAACAGACATAC 60.183 42.308 4.67 0.00 0.00 2.39
4691 7041 5.872617 CCACAAACCTATTCGAACAGACATA 59.127 40.000 4.67 0.00 0.00 2.29
4692 7042 4.695455 CCACAAACCTATTCGAACAGACAT 59.305 41.667 4.67 0.00 0.00 3.06
4693 7043 4.062293 CCACAAACCTATTCGAACAGACA 58.938 43.478 4.67 0.00 0.00 3.41
4694 7044 4.062991 ACCACAAACCTATTCGAACAGAC 58.937 43.478 4.67 0.00 0.00 3.51
4695 7045 4.345859 ACCACAAACCTATTCGAACAGA 57.654 40.909 4.67 0.00 0.00 3.41
4696 7046 5.212194 CAAACCACAAACCTATTCGAACAG 58.788 41.667 0.00 0.00 0.00 3.16
4697 7047 4.641094 ACAAACCACAAACCTATTCGAACA 59.359 37.500 0.00 0.00 0.00 3.18
4698 7048 4.973663 CACAAACCACAAACCTATTCGAAC 59.026 41.667 0.00 0.00 0.00 3.95
4699 7049 4.641094 ACACAAACCACAAACCTATTCGAA 59.359 37.500 0.00 0.00 0.00 3.71
4700 7050 4.200874 ACACAAACCACAAACCTATTCGA 58.799 39.130 0.00 0.00 0.00 3.71
4701 7051 4.561735 ACACAAACCACAAACCTATTCG 57.438 40.909 0.00 0.00 0.00 3.34
4702 7052 6.334202 TGAAACACAAACCACAAACCTATTC 58.666 36.000 0.00 0.00 0.00 1.75
4703 7053 6.287589 TGAAACACAAACCACAAACCTATT 57.712 33.333 0.00 0.00 0.00 1.73
4704 7054 5.923733 TGAAACACAAACCACAAACCTAT 57.076 34.783 0.00 0.00 0.00 2.57
4705 7055 5.010719 TGTTGAAACACAAACCACAAACCTA 59.989 36.000 0.00 0.00 40.36 3.08
4706 7056 4.202264 TGTTGAAACACAAACCACAAACCT 60.202 37.500 0.00 0.00 40.36 3.50
4707 7057 4.058817 TGTTGAAACACAAACCACAAACC 58.941 39.130 0.00 0.00 40.36 3.27
4708 7058 4.747605 ACTGTTGAAACACAAACCACAAAC 59.252 37.500 0.00 0.00 40.36 2.93
4709 7059 4.950050 ACTGTTGAAACACAAACCACAAA 58.050 34.783 0.00 0.00 40.36 2.83
4710 7060 4.592485 ACTGTTGAAACACAAACCACAA 57.408 36.364 0.00 0.00 40.36 3.33
4711 7061 4.551388 GAACTGTTGAAACACAAACCACA 58.449 39.130 0.00 0.00 40.36 4.17
4712 7062 3.924073 GGAACTGTTGAAACACAAACCAC 59.076 43.478 0.00 0.00 40.36 4.16
4713 7063 3.829601 AGGAACTGTTGAAACACAAACCA 59.170 39.130 0.00 0.00 40.36 3.67
4714 7064 4.450082 AGGAACTGTTGAAACACAAACC 57.550 40.909 0.00 0.00 40.36 3.27
4715 7065 5.465935 TCAAGGAACTGTTGAAACACAAAC 58.534 37.500 0.00 0.00 40.86 2.93
4716 7066 5.242838 ACTCAAGGAACTGTTGAAACACAAA 59.757 36.000 0.00 0.00 40.86 2.83
4717 7067 4.764823 ACTCAAGGAACTGTTGAAACACAA 59.235 37.500 0.00 0.00 40.86 3.33
4718 7068 4.155826 CACTCAAGGAACTGTTGAAACACA 59.844 41.667 0.00 0.00 40.86 3.72
4719 7069 4.662145 CACTCAAGGAACTGTTGAAACAC 58.338 43.478 0.00 0.00 40.86 3.32
4720 7070 3.128589 GCACTCAAGGAACTGTTGAAACA 59.871 43.478 0.00 0.00 40.86 2.83
4721 7071 3.695816 GCACTCAAGGAACTGTTGAAAC 58.304 45.455 0.00 0.00 40.86 2.78
4722 7072 2.354510 CGCACTCAAGGAACTGTTGAAA 59.645 45.455 0.00 0.00 40.86 2.69
4723 7073 1.939934 CGCACTCAAGGAACTGTTGAA 59.060 47.619 0.00 0.00 40.86 2.69
4724 7074 1.581934 CGCACTCAAGGAACTGTTGA 58.418 50.000 0.00 0.00 40.86 3.18
4725 7075 0.588252 CCGCACTCAAGGAACTGTTG 59.412 55.000 0.00 0.00 40.86 3.33
4726 7076 0.180406 ACCGCACTCAAGGAACTGTT 59.820 50.000 0.00 0.00 40.86 3.16
4727 7077 0.532862 CACCGCACTCAAGGAACTGT 60.533 55.000 0.00 0.00 40.86 3.55
4728 7078 0.249868 TCACCGCACTCAAGGAACTG 60.250 55.000 0.00 0.00 40.86 3.16
4730 7080 1.523758 AATCACCGCACTCAAGGAAC 58.476 50.000 0.00 0.00 0.00 3.62
4731 7081 1.879380 CAAATCACCGCACTCAAGGAA 59.121 47.619 0.00 0.00 0.00 3.36
4732 7082 1.522668 CAAATCACCGCACTCAAGGA 58.477 50.000 0.00 0.00 0.00 3.36
4733 7083 0.523072 CCAAATCACCGCACTCAAGG 59.477 55.000 0.00 0.00 0.00 3.61
4734 7084 0.109597 GCCAAATCACCGCACTCAAG 60.110 55.000 0.00 0.00 0.00 3.02
4735 7085 0.537143 AGCCAAATCACCGCACTCAA 60.537 50.000 0.00 0.00 0.00 3.02
4736 7086 0.955428 GAGCCAAATCACCGCACTCA 60.955 55.000 0.00 0.00 0.00 3.41
4737 7087 1.648467 GGAGCCAAATCACCGCACTC 61.648 60.000 0.00 0.00 0.00 3.51
4738 7088 1.675641 GGAGCCAAATCACCGCACT 60.676 57.895 0.00 0.00 0.00 4.40
4739 7089 2.700773 GGGAGCCAAATCACCGCAC 61.701 63.158 0.00 0.00 0.00 5.34
4740 7090 2.361104 GGGAGCCAAATCACCGCA 60.361 61.111 0.00 0.00 0.00 5.69
4741 7091 3.508840 CGGGAGCCAAATCACCGC 61.509 66.667 0.00 0.00 37.93 5.68
4742 7092 2.824041 CCGGGAGCCAAATCACCG 60.824 66.667 0.00 0.00 43.89 4.94
4743 7093 2.440247 CCCGGGAGCCAAATCACC 60.440 66.667 18.48 0.00 0.00 4.02
4744 7094 3.140814 GCCCGGGAGCCAAATCAC 61.141 66.667 29.31 0.00 0.00 3.06
4745 7095 3.338250 AGCCCGGGAGCCAAATCA 61.338 61.111 29.31 0.00 0.00 2.57
4746 7096 2.517166 GAGCCCGGGAGCCAAATC 60.517 66.667 29.31 2.84 0.00 2.17
4747 7097 2.631012 GATGAGCCCGGGAGCCAAAT 62.631 60.000 29.31 8.04 0.00 2.32
4748 7098 3.338250 ATGAGCCCGGGAGCCAAA 61.338 61.111 29.31 2.41 0.00 3.28
4749 7099 3.797353 GATGAGCCCGGGAGCCAA 61.797 66.667 29.31 4.14 0.00 4.52
4750 7100 4.804420 AGATGAGCCCGGGAGCCA 62.804 66.667 29.31 18.65 0.00 4.75
4751 7101 4.247380 CAGATGAGCCCGGGAGCC 62.247 72.222 29.31 12.80 0.00 4.70
4752 7102 4.925861 GCAGATGAGCCCGGGAGC 62.926 72.222 29.31 16.09 0.00 4.70
4753 7103 3.473647 TGCAGATGAGCCCGGGAG 61.474 66.667 29.31 0.00 0.00 4.30
4754 7104 3.785859 GTGCAGATGAGCCCGGGA 61.786 66.667 29.31 2.74 0.00 5.14
4755 7105 4.864334 GGTGCAGATGAGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
4756 7106 4.864334 GGGTGCAGATGAGCCCGG 62.864 72.222 0.00 0.00 0.00 5.73
4761 7111 4.827087 AGCGCGGGTGCAGATGAG 62.827 66.667 8.83 0.00 42.97 2.90
4762 7112 4.819761 GAGCGCGGGTGCAGATGA 62.820 66.667 8.83 0.00 42.97 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.