AutoCloner

Multiple sequence alignment - TraesCS1D01G079000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G079000	chr1D	100.000	2492	0	0	1	2492	61350750	61353241	0.000000e+00	4602.0
1	TraesCS1D01G079000	chr1D	88.396	1646	131	17	871	2492	82334076	82335685	0.000000e+00	1927.0
2	TraesCS1D01G079000	chr1D	93.922	872	50	2	1	869	430484973	430485844	0.000000e+00	1314.0
3	TraesCS1D01G079000	chr1D	93.700	873	50	4	1	869	355514142	355515013	0.000000e+00	1303.0
4	TraesCS1D01G079000	chr1D	93.578	872	53	2	1	869	203249397	203250268	0.000000e+00	1297.0
5	TraesCS1D01G079000	chr1D	79.882	169	21	6	1421	1577	196447936	196448103	7.290000e-21	111.0
6	TraesCS1D01G079000	chr2D	94.151	872	48	2	1	869	324018822	324019693	0.000000e+00	1325.0
7	TraesCS1D01G079000	chr2D	94.037	872	49	2	1	869	588206159	588205288	0.000000e+00	1319.0
8	TraesCS1D01G079000	chr2D	75.659	493	108	9	1825	2313	561062330	561061846	4.140000e-58	235.0
9	TraesCS1D01G079000	chr2D	72.895	487	101	25	1832	2309	561062842	561062378	3.340000e-29	139.0
10	TraesCS1D01G079000	chr7D	93.523	880	52	4	1	877	489726061	489725184	0.000000e+00	1304.0
11	TraesCS1D01G079000	chr7D	93.693	872	51	3	1	869	44407375	44406505	0.000000e+00	1303.0
12	TraesCS1D01G079000	chr7D	76.237	930	139	32	1438	2312	485983823	485982921	3.830000e-113	418.0
13	TraesCS1D01G079000	chr7D	75.525	952	160	35	1438	2348	256446560	256447479	1.390000e-107	399.0
14	TraesCS1D01G079000	chr7D	82.536	418	66	5	2073	2487	256446982	256447395	6.550000e-96	361.0
15	TraesCS1D01G079000	chr7D	79.294	425	69	12	2063	2479	148163512	148163099	1.890000e-71	279.0
16	TraesCS1D01G079000	chr4D	93.700	873	52	3	1	870	302707196	302708068	0.000000e+00	1304.0
17	TraesCS1D01G079000	chr7A	93.693	872	52	3	1	869	98504955	98505826	0.000000e+00	1303.0
18	TraesCS1D01G079000	chr7A	73.724	666	123	30	1835	2492	157145006	157144385	1.940000e-51	213.0
19	TraesCS1D01G079000	chr7A	75.342	146	29	5	2014	2157	689371931	689372071	2.070000e-06	63.9
20	TraesCS1D01G079000	chr1A	84.533	1028	97	13	1487	2492	59512935	59513922	0.000000e+00	961.0
21	TraesCS1D01G079000	chr1A	92.202	654	31	4	869	1502	59510671	59511324	0.000000e+00	907.0
22	TraesCS1D01G079000	chr3D	78.727	1100	159	36	1413	2492	535459697	535458653	0.000000e+00	665.0
23	TraesCS1D01G079000	chr3D	75.394	951	159	35	1438	2348	15199512	15198597	8.360000e-105	390.0
24	TraesCS1D01G079000	chr3D	82.898	421	63	7	2073	2490	15199092	15198678	1.090000e-98	370.0
25	TraesCS1D01G079000	chr3D	82.911	158	21	6	1537	1690	41604875	41604720	1.200000e-28	137.0
26	TraesCS1D01G079000	chr6A	80.787	432	71	8	2068	2492	16974445	16974019	6.650000e-86	327.0
27	TraesCS1D01G079000	chr2B	81.750	400	64	6	2098	2490	275334685	275334288	2.390000e-85	326.0
28	TraesCS1D01G079000	chr2B	79.021	143	27	3	2065	2207	373060462	373060601	7.340000e-16	95.3
29	TraesCS1D01G079000	chr6B	80.090	442	81	5	2043	2481	533819267	533818830	3.090000e-84	322.0
30	TraesCS1D01G079000	chr5D	84.916	179	23	2	1605	1779	221140862	221140684	7.080000e-41	178.0
31	TraesCS1D01G079000	chr5B	80.769	208	35	3	1488	1690	571829073	571829280	9.230000e-35	158.0
32	TraesCS1D01G079000	chr5B	81.356	177	22	7	1519	1690	571828966	571829136	1.550000e-27	134.0
33	TraesCS1D01G079000	chr3A	80.769	208	35	3	1488	1690	13251536	13251743	9.230000e-35	158.0
34	TraesCS1D01G079000	chr3A	82.486	177	23	5	1519	1690	13251426	13251599	5.550000e-32	148.0
35	TraesCS1D01G079000	chr3A	82.390	159	21	6	1537	1690	457921373	457921217	5.590000e-27	132.0
36	TraesCS1D01G079000	chr2A	81.720	93	13	3	1996	2086	318085520	318085430	9.560000e-10	75.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G079000	chr1D	61350750	61353241	2491	False	4602	4602	100.0000	1	2492	1	chr1D.!!$F1	2491
1	TraesCS1D01G079000	chr1D	82334076	82335685	1609	False	1927	1927	88.3960	871	2492	1	chr1D.!!$F2	1621
2	TraesCS1D01G079000	chr1D	430484973	430485844	871	False	1314	1314	93.9220	1	869	1	chr1D.!!$F6	868
3	TraesCS1D01G079000	chr1D	355514142	355515013	871	False	1303	1303	93.7000	1	869	1	chr1D.!!$F5	868
4	TraesCS1D01G079000	chr1D	203249397	203250268	871	False	1297	1297	93.5780	1	869	1	chr1D.!!$F4	868
5	TraesCS1D01G079000	chr2D	324018822	324019693	871	False	1325	1325	94.1510	1	869	1	chr2D.!!$F1	868
6	TraesCS1D01G079000	chr2D	588205288	588206159	871	True	1319	1319	94.0370	1	869	1	chr2D.!!$R1	868
7	TraesCS1D01G079000	chr7D	489725184	489726061	877	True	1304	1304	93.5230	1	877	1	chr7D.!!$R4	876
8	TraesCS1D01G079000	chr7D	44406505	44407375	870	True	1303	1303	93.6930	1	869	1	chr7D.!!$R1	868
9	TraesCS1D01G079000	chr7D	485982921	485983823	902	True	418	418	76.2370	1438	2312	1	chr7D.!!$R3	874
10	TraesCS1D01G079000	chr7D	256446560	256447479	919	False	380	399	79.0305	1438	2487	2	chr7D.!!$F1	1049
11	TraesCS1D01G079000	chr4D	302707196	302708068	872	False	1304	1304	93.7000	1	870	1	chr4D.!!$F1	869
12	TraesCS1D01G079000	chr7A	98504955	98505826	871	False	1303	1303	93.6930	1	869	1	chr7A.!!$F1	868
13	TraesCS1D01G079000	chr7A	157144385	157145006	621	True	213	213	73.7240	1835	2492	1	chr7A.!!$R1	657
14	TraesCS1D01G079000	chr1A	59510671	59513922	3251	False	934	961	88.3675	869	2492	2	chr1A.!!$F1	1623
15	TraesCS1D01G079000	chr3D	535458653	535459697	1044	True	665	665	78.7270	1413	2492	1	chr3D.!!$R2	1079
16	TraesCS1D01G079000	chr3D	15198597	15199512	915	True	380	390	79.1460	1438	2490	2	chr3D.!!$R3	1052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
615	617	1.06643	GCTAACGGATGGGTCTTGTCA	60.066	52.381	0.0	0.0	0.0	3.58	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2096	3843	0.17897	AGAGTGTGTCACTACCCGGT	60.179	55.0	0.0	0.0	45.44	5.28	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
89	90	1.272203	ACATGACCGAGACACCTCTCT	60.272	52.381	0.00	0.00	40.96	3.10
114	115	4.272748	GTCAATAACCAATAGCGGAACCTC	59.727	45.833	0.00	0.00	0.00	3.85
127	128	2.028476	CGGAACCTCGATGCCCATATTA	60.028	50.000	0.00	0.00	0.00	0.98
184	185	4.090354	CGAACCGTTATGACAACATACGTT	59.910	41.667	0.00	0.00	38.50	3.99
198	199	6.148811	ACAACATACGTTATTCCCTTTGTCTG	59.851	38.462	0.00	0.00	32.75	3.51
204	205	2.951229	ATTCCCTTTGTCTGTCGGTT	57.049	45.000	0.00	0.00	0.00	4.44
346	348	7.488187	CTTGCAAGCTTATGATGTGTACTAT	57.512	36.000	14.65	0.00	0.00	2.12
355	357	4.166246	TGATGTGTACTATCGAGAGGGT	57.834	45.455	12.41	0.00	0.00	4.34
393	395	3.718815	GATACTCGGAGTGACAAATCCC	58.281	50.000	20.58	0.00	31.43	3.85
473	475	7.925043	TTATAATCACCCAATTACGTTGTGT	57.075	32.000	0.00	0.00	36.01	3.72
615	617	1.066430	GCTAACGGATGGGTCTTGTCA	60.066	52.381	0.00	0.00	0.00	3.58
628	632	5.006386	GGGTCTTGTCAAACATCATTCTCT	58.994	41.667	0.00	0.00	0.00	3.10
665	669	7.297391	TCACGTTATCAAATGACAACTCATTG	58.703	34.615	3.38	0.00	44.93	2.82
718	722	4.576879	TCAACGAGCTAGTCAAGTAGAGA	58.423	43.478	0.00	0.00	0.00	3.10
780	784	7.776030	ACATGTATTATGGTTTCCGGTCAATAA	59.224	33.333	0.00	4.03	0.00	1.40
785	789	8.940768	ATTATGGTTTCCGGTCAATAAAATTG	57.059	30.769	0.00	0.00	0.00	2.32
865	869	3.667497	TGCCTCTAGAGCATATTTCCG	57.333	47.619	14.73	0.00	34.69	4.30
885	889	1.476891	GTCAACTCCGCCATCTAGACA	59.523	52.381	0.00	0.00	0.00	3.41
890	894	1.067821	CTCCGCCATCTAGACACCTTC	59.932	57.143	0.00	0.00	0.00	3.46
896	900	2.100197	CATCTAGACACCTTCCCGACA	58.900	52.381	0.00	0.00	0.00	4.35
911	915	2.842462	ACACCGGTGAGTCCTGCA	60.842	61.111	40.21	0.00	0.00	4.41
960	964	3.528370	CGGATCTCGCCCCGTCTT	61.528	66.667	0.00	0.00	40.78	3.01
971	975	1.078426	CCCGTCTTGACACCATCCC	60.078	63.158	1.59	0.00	0.00	3.85
1066	1070	1.376037	GTGGAGGCTTCTGGGTTCG	60.376	63.158	0.00	0.00	0.00	3.95
1084	1097	1.451936	GCGGGGAAGCATATCAGGT	59.548	57.895	0.00	0.00	37.05	4.00
1116	1129	2.435586	CTGCTTCCCGGTGCTCAG	60.436	66.667	0.00	0.00	0.00	3.35
1128	1141	1.404181	GGTGCTCAGTTCGTGCAGATA	60.404	52.381	0.00	0.00	44.36	1.98
1199	1212	1.075305	ACATGGTCAGGTGCATGCA	59.925	52.632	18.46	18.46	0.00	3.96
1515	3158	6.814644	AGTTGTAGTTGCGCACATAATAGTTA	59.185	34.615	11.12	0.00	0.00	2.24
1552	3216	1.550327	TTGGGAAGTTGCACAACACA	58.450	45.000	15.40	6.28	43.47	3.72
1566	3230	4.334481	GCACAACACAGTGGTACTAAGTTT	59.666	41.667	5.31	0.00	39.87	2.66
1625	3295	7.384439	TCGCATATTTTTAGTTGACATCCAA	57.616	32.000	0.00	0.00	0.00	3.53
1666	3336	7.918033	CACACATAGTAGTTCTCAGTTGGATAG	59.082	40.741	0.00	0.00	0.00	2.08
1690	3376	5.757808	GGACCATTAAAAAGTTGCACAACAT	59.242	36.000	15.40	0.70	43.47	2.71
1706	3392	6.982724	TGCACAACATGACAATACAAAAATGA	59.017	30.769	0.00	0.00	0.00	2.57
1760	3461	1.108776	TAGCTAGACGGGCGACATTT	58.891	50.000	0.00	0.00	34.52	2.32
1778	3479	6.253727	CGACATTTTAAGCTCGATCAACTACT	59.746	38.462	0.00	0.00	0.00	2.57
1779	3480	7.295952	ACATTTTAAGCTCGATCAACTACTG	57.704	36.000	0.00	0.00	0.00	2.74
1780	3481	6.874134	ACATTTTAAGCTCGATCAACTACTGT	59.126	34.615	0.00	0.00	0.00	3.55
1781	3482	7.387948	ACATTTTAAGCTCGATCAACTACTGTT	59.612	33.333	0.00	0.00	36.75	3.16
1790	3491	0.586319	CAACTACTGTTGCACACCGG	59.414	55.000	0.00	0.00	45.57	5.28
1791	3492	0.466543	AACTACTGTTGCACACCGGA	59.533	50.000	9.46	0.00	34.71	5.14
1792	3493	0.466543	ACTACTGTTGCACACCGGAA	59.533	50.000	9.46	0.00	0.00	4.30
1793	3494	1.134340	ACTACTGTTGCACACCGGAAA	60.134	47.619	9.46	0.00	0.00	3.13
1794	3495	1.944024	CTACTGTTGCACACCGGAAAA	59.056	47.619	9.46	0.00	0.00	2.29
1795	3496	0.454196	ACTGTTGCACACCGGAAAAC	59.546	50.000	9.46	5.50	0.00	2.43
1798	3499	0.454196	GTTGCACACCGGAAAACTGT	59.546	50.000	9.46	0.00	0.00	3.55
1905	3650	3.002791	ACACACTCTCGTTGGCATAATG	58.997	45.455	0.00	0.00	0.00	1.90
1906	3651	3.002791	CACACTCTCGTTGGCATAATGT	58.997	45.455	0.00	0.00	0.00	2.71
2052	3799	2.610433	CATAGTCGCACACACATGACT	58.390	47.619	0.00	0.00	43.62	3.41
2056	3803	2.029020	AGTCGCACACACATGACTACAT	60.029	45.455	0.00	0.00	39.76	2.29
2058	3805	3.924073	GTCGCACACACATGACTACATAA	59.076	43.478	0.00	0.00	35.09	1.90
2092	3839	1.275010	TCGGCATAGTCACACACATGT	59.725	47.619	0.00	0.00	40.80	3.21
2101	3848	3.422303	CACACATGTGCGACCGGG	61.422	66.667	25.68	0.00	39.39	5.73
2102	3849	3.936203	ACACATGTGCGACCGGGT	61.936	61.111	25.68	0.00	0.00	5.28
2135	3882	0.380733	CGTCGGCATAGTAGCTCACA	59.619	55.000	0.00	0.00	34.17	3.58
2140	3887	1.560923	GCATAGTAGCTCACACACGG	58.439	55.000	0.00	0.00	0.00	4.94
2227	3974	2.416547	GTCGGTGTAGTAGCTCACGTAA	59.583	50.000	0.00	0.00	35.67	3.18
2235	4050	1.020861	TAGCTCACGTAAGACCGCGA	61.021	55.000	8.23	0.00	43.62	5.87
2240	4055	1.134226	CACGTAAGACCGCGAAGTTT	58.866	50.000	8.23	0.00	43.62	2.66
2249	4064	2.798847	GACCGCGAAGTTTTACACTCTT	59.201	45.455	8.23	0.00	32.94	2.85
2312	4129	1.147473	CACTTGCATAGTCGCACACA	58.853	50.000	0.00	0.00	42.87	3.72
2313	4130	1.530720	CACTTGCATAGTCGCACACAA	59.469	47.619	0.00	0.00	42.87	3.33
2337	4154	2.618709	GGCTACAGAGTTGCACACTTTT	59.381	45.455	5.99	0.00	36.13	2.27

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
114	115	3.195610	TGTAGGAGCTAATATGGGCATCG	59.804	47.826	0.00	0.00	0.00	3.84
127	128	7.172342	AGATCTTCGTAGAATATGTAGGAGCT	58.828	38.462	0.00	0.00	45.90	4.09
184	185	4.069304	CAAACCGACAGACAAAGGGAATA	58.931	43.478	0.00	0.00	0.00	1.75
198	199	0.236449	CGGGCAAGTAACAAACCGAC	59.764	55.000	0.00	0.00	43.69	4.79
204	205	2.028839	TCGAATCTCGGGCAAGTAACAA	60.029	45.455	0.00	0.00	40.88	2.83
260	262	2.678324	ACGAGTAAAGAGACTTGCTGC	58.322	47.619	0.00	0.00	34.59	5.25
343	345	2.940994	TCTCTGGACCCTCTCGATAG	57.059	55.000	0.00	0.00	0.00	2.08
346	348	1.143277	GGTATCTCTGGACCCTCTCGA	59.857	57.143	0.00	0.00	0.00	4.04
393	395	6.094464	TGTTGAGTTGGCATAGATTGAGATTG	59.906	38.462	0.00	0.00	0.00	2.67
473	475	1.804151	GCCTTGTGTGCTATCAAACGA	59.196	47.619	0.00	0.00	33.01	3.85
561	563	9.722056	AATGATCGTTCAGTTTTATTGCTATTC	57.278	29.630	2.21	0.00	34.73	1.75
628	632	9.934190	CATTTGATAACGTGATCACATCATTAA	57.066	29.630	24.93	16.79	42.04	1.40
718	722	0.178970	ACACCGTGTCCCTAGTGAGT	60.179	55.000	0.00	0.00	34.33	3.41
764	768	5.793030	ACAATTTTATTGACCGGAAACCA	57.207	34.783	9.46	0.00	0.00	3.67
854	858	2.550978	CGGAGTTGACGGAAATATGCT	58.449	47.619	0.00	0.00	0.00	3.79
865	869	1.476891	TGTCTAGATGGCGGAGTTGAC	59.523	52.381	0.00	0.00	0.00	3.18
896	900	3.626924	GGTGCAGGACTCACCGGT	61.627	66.667	0.00	0.00	43.75	5.28
960	964	3.619733	CGAAGATGAAAGGGATGGTGTCA	60.620	47.826	0.00	0.00	0.00	3.58
971	975	1.281899	GTCCTCGCCGAAGATGAAAG	58.718	55.000	0.00	0.00	0.00	2.62
1044	1048	1.751927	CCCAGAAGCCTCCACATGC	60.752	63.158	0.00	0.00	0.00	4.06
1066	1070	0.179018	AACCTGATATGCTTCCCCGC	60.179	55.000	0.00	0.00	0.00	6.13
1078	1082	2.047274	CGTCACGGCCAACCTGAT	60.047	61.111	2.24	0.00	0.00	2.90
1084	1097	3.276091	CAGCAACGTCACGGCCAA	61.276	61.111	2.24	0.00	0.00	4.52
1199	1212	1.277580	CCATGACAAGGCCTCCTCCT	61.278	60.000	5.23	0.00	38.31	3.69
1356	1370	3.446442	AGGACATTGAGAGCCACAAAT	57.554	42.857	0.00	0.00	0.00	2.32
1361	1375	1.208052	GCAGTAGGACATTGAGAGCCA	59.792	52.381	0.00	0.00	0.00	4.75
1515	3158	9.646522	ACTTCCCAAATCTTATATGCAACTAAT	57.353	29.630	0.00	0.00	0.00	1.73
1552	3216	4.763793	TCGTCTAGCAAACTTAGTACCACT	59.236	41.667	0.00	0.00	0.00	4.00
1566	3230	7.843490	ACTTAAGCAAAAATATCGTCTAGCA	57.157	32.000	1.29	0.00	0.00	3.49
1618	3288	7.119262	GTGTGCAACTATAACTACTTTGGATGT	59.881	37.037	0.00	0.00	38.04	3.06
1666	3336	5.112686	TGTTGTGCAACTTTTTAATGGTCC	58.887	37.500	14.97	0.00	41.67	4.46
1690	3376	9.986833	CATCGTCTAATCATTTTTGTATTGTCA	57.013	29.630	0.00	0.00	0.00	3.58
1706	3392	2.586258	AGCGCAAGACATCGTCTAAT	57.414	45.000	11.47	0.00	42.59	1.73
1737	3434	1.233019	GTCGCCCGTCTAGCTATACA	58.767	55.000	9.65	0.00	0.00	2.29
1779	3480	0.454196	ACAGTTTTCCGGTGTGCAAC	59.546	50.000	0.00	0.00	37.35	4.17
1780	3481	1.135257	CAACAGTTTTCCGGTGTGCAA	60.135	47.619	0.00	0.00	0.00	4.08
1781	3482	0.453793	CAACAGTTTTCCGGTGTGCA	59.546	50.000	0.00	0.00	0.00	4.57
1782	3483	0.869880	GCAACAGTTTTCCGGTGTGC	60.870	55.000	0.00	1.32	0.00	4.57
1783	3484	0.453793	TGCAACAGTTTTCCGGTGTG	59.546	50.000	0.00	0.00	0.00	3.82
1784	3485	0.454196	GTGCAACAGTTTTCCGGTGT	59.546	50.000	0.00	0.00	36.32	4.16
1785	3486	0.453793	TGTGCAACAGTTTTCCGGTG	59.546	50.000	0.00	0.00	45.67	4.94
1786	3487	2.875188	TGTGCAACAGTTTTCCGGT	58.125	47.368	0.00	0.00	45.67	5.28
1798	3499	1.806247	CGACAGTCTTCCAGTGTGCAA	60.806	52.381	0.00	0.00	38.93	4.08
1833	3534	1.197036	CGACGAGACTGTGCAACTCTA	59.803	52.381	0.00	0.00	38.04	2.43
1905	3650	1.409064	TCCCGTAGTCATGCATGAGAC	59.591	52.381	29.38	25.68	37.51	3.36
1906	3651	1.683385	CTCCCGTAGTCATGCATGAGA	59.317	52.381	29.38	19.50	37.51	3.27
1920	3665	1.672356	GAGCATGTGCAACTCCCGT	60.672	57.895	7.83	0.00	45.16	5.28
2052	3799	6.183360	TGCCGATGAGAGTGTGTAATTATGTA	60.183	38.462	0.00	0.00	0.00	2.29
2056	3803	4.729227	TGCCGATGAGAGTGTGTAATTA	57.271	40.909	0.00	0.00	0.00	1.40
2058	3805	3.827008	ATGCCGATGAGAGTGTGTAAT	57.173	42.857	0.00	0.00	0.00	1.89
2092	3839	2.598099	TGTCACTACCCGGTCGCA	60.598	61.111	0.00	0.00	0.00	5.10
2094	3841	1.080974	GTGTGTCACTACCCGGTCG	60.081	63.158	0.00	0.00	0.00	4.79
2095	3842	0.243095	GAGTGTGTCACTACCCGGTC	59.757	60.000	0.00	0.00	45.44	4.79
2096	3843	0.178970	AGAGTGTGTCACTACCCGGT	60.179	55.000	0.00	0.00	45.44	5.28
2097	3844	0.526662	GAGAGTGTGTCACTACCCGG	59.473	60.000	4.27	0.00	45.44	5.73
2135	3882	2.281070	CAACTCCTGCTGCCGTGT	60.281	61.111	0.00	0.00	0.00	4.49
2185	3932	4.885426	AGTGTGCAACTCAGTGGG	57.115	55.556	0.00	0.00	38.04	4.61
2227	3974	2.035576	AGAGTGTAAAACTTCGCGGTCT	59.964	45.455	6.13	0.00	40.07	3.85
2235	4050	3.537580	TGCCGACAAGAGTGTAAAACTT	58.462	40.909	0.00	0.00	40.07	2.66
2240	4055	4.242475	CAACTATGCCGACAAGAGTGTAA	58.758	43.478	0.00	0.00	38.41	2.41
2266	4081	0.179215	GCAACTACGCTGTCACATGC	60.179	55.000	0.00	0.00	0.00	4.06
2279	4096	3.475575	TGCAAGTGAGATTGTGCAACTA	58.524	40.909	0.00	0.00	43.65	2.24
2312	4129	2.554032	GTGTGCAACTCTGTAGCCATTT	59.446	45.455	0.00	0.00	38.04	2.32
2313	4130	2.154462	GTGTGCAACTCTGTAGCCATT	58.846	47.619	0.00	0.00	38.04	3.16
2352	4170	2.568612	CGCAGCGAAGGAGAGTGA	59.431	61.111	9.98	0.00	0.00	3.41
2442	4262	1.227527	CTTCGTGGTCCTGTGTGCA	60.228	57.895	0.00	0.00	0.00	4.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.