Multiple sequence alignment - TraesCS1D01G076600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G076600 chr1D 100.000 3387 0 0 1 3387 58755758 58759144 0.000000e+00 6255.0
1 TraesCS1D01G076600 chr1D 96.667 210 5 2 583 791 58756126 58756334 6.960000e-92 348.0
2 TraesCS1D01G076600 chr1D 96.667 210 5 2 369 577 58756340 58756548 6.960000e-92 348.0
3 TraesCS1D01G076600 chr1D 84.348 115 16 2 616 729 441035312 441035425 9.930000e-21 111.0
4 TraesCS1D01G076600 chr1D 89.362 47 5 0 257 303 233926162 233926116 3.650000e-05 60.2
5 TraesCS1D01G076600 chr1A 92.577 2142 97 28 777 2877 57634101 57636221 0.000000e+00 3018.0
6 TraesCS1D01G076600 chr1A 93.385 514 25 8 51 563 57631192 57631697 0.000000e+00 752.0
7 TraesCS1D01G076600 chr1A 94.388 196 8 2 583 777 57631504 57631697 7.110000e-77 298.0
8 TraesCS1D01G076600 chr1A 92.105 190 12 2 3198 3387 57636555 57636741 7.210000e-67 265.0
9 TraesCS1D01G076600 chr1A 98.148 108 2 0 2961 3068 57636221 57636328 4.460000e-44 189.0
10 TraesCS1D01G076600 chr1A 92.157 51 3 1 1 50 57631121 57631171 1.690000e-08 71.3
11 TraesCS1D01G076600 chr1A 100.000 31 0 0 3080 3110 57636516 57636546 1.310000e-04 58.4
12 TraesCS1D01G076600 chr1B 90.207 2032 121 42 1371 3387 94225925 94227893 0.000000e+00 2579.0
13 TraesCS1D01G076600 chr1B 87.554 233 13 8 864 1080 94225443 94225675 4.340000e-64 255.0
14 TraesCS1D01G076600 chr1B 92.437 119 3 2 1243 1355 94225715 94225833 7.520000e-37 165.0
15 TraesCS1D01G076600 chr1B 79.121 182 26 7 221 391 681956195 681956375 7.680000e-22 115.0
16 TraesCS1D01G076600 chr1B 97.674 43 1 0 3068 3110 94227656 94227698 1.300000e-09 75.0
17 TraesCS1D01G076600 chr3A 78.912 588 105 17 1432 2013 714157210 714156636 6.860000e-102 381.0
18 TraesCS1D01G076600 chr3A 80.966 352 47 12 991 1333 714157753 714157413 9.320000e-66 261.0
19 TraesCS1D01G076600 chr3D 78.662 553 102 13 1433 1982 578413459 578413998 1.500000e-93 353.0
20 TraesCS1D01G076600 chr3D 77.581 339 45 20 996 1330 578413011 578413322 3.470000e-40 176.0
21 TraesCS1D01G076600 chr3B 77.857 560 108 12 1432 1987 772401201 772400654 1.950000e-87 333.0
22 TraesCS1D01G076600 chr3B 86.957 115 12 3 616 729 389785162 389785274 3.550000e-25 126.0
23 TraesCS1D01G076600 chr3B 79.710 138 17 5 243 369 800214167 800214030 4.650000e-14 89.8
24 TraesCS1D01G076600 chr4B 81.905 315 42 8 222 523 471307836 471308148 5.610000e-63 252.0
25 TraesCS1D01G076600 chr4B 84.167 120 17 2 610 729 85732297 85732180 7.680000e-22 115.0
26 TraesCS1D01G076600 chr2A 81.994 311 41 8 221 517 420682601 420682910 2.020000e-62 250.0
27 TraesCS1D01G076600 chr2A 78.361 305 51 11 225 515 670676738 670676435 2.080000e-42 183.0
28 TraesCS1D01G076600 chr2A 87.050 139 14 4 594 729 670676572 670676435 1.630000e-33 154.0
29 TraesCS1D01G076600 chr2A 85.507 138 17 3 595 731 420682775 420682910 1.270000e-29 141.0
30 TraesCS1D01G076600 chr5D 80.333 300 40 13 230 515 229152767 229153061 3.420000e-50 209.0
31 TraesCS1D01G076600 chr5D 83.453 139 18 3 594 729 229152925 229153061 1.280000e-24 124.0
32 TraesCS1D01G076600 chr7A 83.636 220 32 4 301 517 81636522 81636304 1.590000e-48 204.0
33 TraesCS1D01G076600 chr7A 90.741 54 3 2 221 273 52960860 52960912 1.690000e-08 71.3
34 TraesCS1D01G076600 chr6A 81.154 260 33 11 247 493 565342684 565342940 9.590000e-46 195.0
35 TraesCS1D01G076600 chr6A 77.460 315 55 10 218 518 124138881 124139193 1.250000e-39 174.0
36 TraesCS1D01G076600 chr5B 79.787 282 40 9 230 498 276668910 276668633 4.460000e-44 189.0
37 TraesCS1D01G076600 chr2B 79.044 272 45 4 259 518 741474210 741473939 3.470000e-40 176.0
38 TraesCS1D01G076600 chr2B 76.667 270 50 10 259 518 741575857 741575591 1.640000e-28 137.0
39 TraesCS1D01G076600 chr4D 79.793 193 30 8 337 523 374800083 374799894 7.630000e-27 132.0
40 TraesCS1D01G076600 chr7B 85.950 121 11 4 611 729 65565180 65565296 1.280000e-24 124.0
41 TraesCS1D01G076600 chr6D 80.368 163 20 8 220 370 321773735 321773573 2.760000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G076600 chr1D 58755758 58759144 3386 False 2317.000000 6255 97.7780 1 3387 3 chr1D.!!$F2 3386
1 TraesCS1D01G076600 chr1A 57631121 57636741 5620 False 664.528571 3018 94.6800 1 3387 7 chr1A.!!$F1 3386
2 TraesCS1D01G076600 chr1B 94225443 94227893 2450 False 768.500000 2579 91.9680 864 3387 4 chr1B.!!$F2 2523
3 TraesCS1D01G076600 chr3A 714156636 714157753 1117 True 321.000000 381 79.9390 991 2013 2 chr3A.!!$R1 1022
4 TraesCS1D01G076600 chr3D 578413011 578413998 987 False 264.500000 353 78.1215 996 1982 2 chr3D.!!$F1 986
5 TraesCS1D01G076600 chr3B 772400654 772401201 547 True 333.000000 333 77.8570 1432 1987 1 chr3B.!!$R1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 141 0.420272 TTTACTAGCCCCCTCCCTGT 59.580 55.0 0.0 0.0 0.00 4.00 F
1430 4090 0.250727 GAACCTGCTTGGCTGTGGTA 60.251 55.0 0.0 0.0 40.22 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 4434 0.887933 CCCAGGTACGCAAGCAAAAT 59.112 50.0 0.00 0.0 45.62 1.82 R
2395 5065 1.590932 GGATCGATTGAGCATGCACT 58.409 50.0 21.98 0.0 30.14 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.721776 TGCAGTGGAGTCCTTCCTTTATAT 59.278 41.667 11.33 0.00 46.92 0.86
32 33 5.903010 TGCAGTGGAGTCCTTCCTTTATATA 59.097 40.000 11.33 0.00 46.92 0.86
33 34 6.042093 TGCAGTGGAGTCCTTCCTTTATATAG 59.958 42.308 11.33 0.00 46.92 1.31
70 92 5.690409 GCATAACATTGGCATTGATCTGAAG 59.310 40.000 15.69 1.38 0.00 3.02
109 131 0.532115 TTCGTCCGGGTTTACTAGCC 59.468 55.000 0.00 0.00 41.19 3.93
116 138 1.351080 GGGTTTACTAGCCCCCTCCC 61.351 65.000 0.00 0.00 38.99 4.30
119 141 0.420272 TTTACTAGCCCCCTCCCTGT 59.580 55.000 0.00 0.00 0.00 4.00
233 255 3.307059 GGTGACACATAGAGCCTCTTTGT 60.307 47.826 11.46 11.46 38.83 2.83
237 259 3.997021 ACACATAGAGCCTCTTTGTTTCG 59.003 43.478 14.17 7.19 36.71 3.46
240 262 0.951040 AGAGCCTCTTTGTTTCGCGG 60.951 55.000 6.13 0.00 0.00 6.46
295 317 6.668541 AGGATTGAAATGTCACACTTATCG 57.331 37.500 0.00 0.00 31.90 2.92
296 318 5.065218 AGGATTGAAATGTCACACTTATCGC 59.935 40.000 0.00 0.00 31.90 4.58
300 322 5.868257 TGAAATGTCACACTTATCGCAATC 58.132 37.500 0.00 0.00 0.00 2.67
303 325 3.261580 TGTCACACTTATCGCAATCCTG 58.738 45.455 0.00 0.00 0.00 3.86
363 386 2.226437 TCAAAGAAGTTTGAGCGGATGC 59.774 45.455 0.00 0.00 45.82 3.91
494 517 7.888250 ATCCTCCAAAATTCCTATGAAAGAC 57.112 36.000 0.00 0.00 33.32 3.01
495 518 6.187682 TCCTCCAAAATTCCTATGAAAGACC 58.812 40.000 0.00 0.00 33.32 3.85
496 519 6.011628 TCCTCCAAAATTCCTATGAAAGACCT 60.012 38.462 0.00 0.00 33.32 3.85
497 520 6.665248 CCTCCAAAATTCCTATGAAAGACCTT 59.335 38.462 0.00 0.00 33.32 3.50
498 521 7.179160 CCTCCAAAATTCCTATGAAAGACCTTT 59.821 37.037 0.00 0.00 33.32 3.11
499 522 7.895759 TCCAAAATTCCTATGAAAGACCTTTG 58.104 34.615 0.00 0.00 33.32 2.77
500 523 7.728083 TCCAAAATTCCTATGAAAGACCTTTGA 59.272 33.333 0.00 0.00 33.32 2.69
501 524 8.367156 CCAAAATTCCTATGAAAGACCTTTGAA 58.633 33.333 0.00 0.00 33.32 2.69
502 525 9.933723 CAAAATTCCTATGAAAGACCTTTGAAT 57.066 29.630 0.00 0.56 33.32 2.57
504 527 8.884124 AATTCCTATGAAAGACCTTTGAATCA 57.116 30.769 0.00 0.00 33.32 2.57
505 528 8.884124 ATTCCTATGAAAGACCTTTGAATCAA 57.116 30.769 0.00 0.00 33.32 2.57
506 529 8.704849 TTCCTATGAAAGACCTTTGAATCAAA 57.295 30.769 8.25 8.25 32.11 2.69
517 540 5.467035 CTTTGAATCAAAGGTGCCCTTAA 57.533 39.130 23.96 0.54 43.92 1.85
518 541 4.864704 TTGAATCAAAGGTGCCCTTAAC 57.135 40.909 6.88 0.25 43.92 2.01
519 542 3.838565 TGAATCAAAGGTGCCCTTAACA 58.161 40.909 6.88 2.30 43.92 2.41
520 543 4.415596 TGAATCAAAGGTGCCCTTAACAT 58.584 39.130 6.88 0.00 43.92 2.71
521 544 4.837860 TGAATCAAAGGTGCCCTTAACATT 59.162 37.500 6.88 6.01 43.92 2.71
522 545 5.306678 TGAATCAAAGGTGCCCTTAACATTT 59.693 36.000 6.88 0.00 43.92 2.32
523 546 4.599047 TCAAAGGTGCCCTTAACATTTG 57.401 40.909 6.88 7.22 43.92 2.32
524 547 3.964031 TCAAAGGTGCCCTTAACATTTGT 59.036 39.130 11.84 0.00 43.92 2.83
525 548 5.141182 TCAAAGGTGCCCTTAACATTTGTA 58.859 37.500 11.84 0.00 43.92 2.41
526 549 5.242838 TCAAAGGTGCCCTTAACATTTGTAG 59.757 40.000 11.84 0.00 43.92 2.74
527 550 4.382386 AGGTGCCCTTAACATTTGTAGT 57.618 40.909 0.00 0.00 0.00 2.73
528 551 4.332828 AGGTGCCCTTAACATTTGTAGTC 58.667 43.478 0.00 0.00 0.00 2.59
529 552 4.076394 GGTGCCCTTAACATTTGTAGTCA 58.924 43.478 0.00 0.00 0.00 3.41
530 553 4.521256 GGTGCCCTTAACATTTGTAGTCAA 59.479 41.667 0.00 0.00 0.00 3.18
531 554 5.010213 GGTGCCCTTAACATTTGTAGTCAAA 59.990 40.000 0.00 0.00 45.71 2.69
551 574 9.705290 AGTCAAATATGTGGTGAAAATTTAACC 57.295 29.630 5.27 5.27 34.38 2.85
552 575 8.931775 GTCAAATATGTGGTGAAAATTTAACCC 58.068 33.333 9.67 2.42 32.70 4.11
553 576 8.651389 TCAAATATGTGGTGAAAATTTAACCCA 58.349 29.630 9.67 7.64 32.70 4.51
554 577 9.277783 CAAATATGTGGTGAAAATTTAACCCAA 57.722 29.630 9.67 0.00 32.70 4.12
555 578 9.853177 AAATATGTGGTGAAAATTTAACCCAAA 57.147 25.926 9.67 7.57 32.70 3.28
556 579 9.853177 AATATGTGGTGAAAATTTAACCCAAAA 57.147 25.926 9.67 2.07 32.70 2.44
559 582 8.664211 TGTGGTGAAAATTTAACCCAAAATAC 57.336 30.769 9.67 1.19 32.70 1.89
560 583 8.265055 TGTGGTGAAAATTTAACCCAAAATACA 58.735 29.630 9.67 3.68 32.70 2.29
561 584 9.110502 GTGGTGAAAATTTAACCCAAAATACAA 57.889 29.630 9.67 0.00 32.70 2.41
562 585 9.853177 TGGTGAAAATTTAACCCAAAATACAAT 57.147 25.926 9.67 0.00 32.70 2.71
713 736 8.810652 TCGAAAATTCCTATGAAAAACCTTTG 57.189 30.769 0.00 0.00 33.32 2.77
852 3279 1.244019 AAGAATGAGCGGGTTGTGCC 61.244 55.000 0.00 0.00 0.00 5.01
870 3297 5.324409 TGTGCCTCTCATCCTTGTAATTTT 58.676 37.500 0.00 0.00 0.00 1.82
897 3324 5.992729 AGAGAAATCGAATCTAGCGTCTAC 58.007 41.667 4.27 0.00 0.00 2.59
1159 3630 4.317444 TGTAACGGCCGGTGGTGG 62.317 66.667 29.82 0.00 0.00 4.61
1266 3739 1.129251 CTGCACGAGTACAAAGCCATG 59.871 52.381 0.00 0.00 0.00 3.66
1373 3918 9.959693 ATATTTACACATCCTAGCTAGGGATAT 57.040 33.333 34.43 20.74 43.79 1.63
1374 3919 8.686739 ATTTACACATCCTAGCTAGGGATATT 57.313 34.615 34.43 20.44 43.79 1.28
1375 3920 7.719871 TTACACATCCTAGCTAGGGATATTC 57.280 40.000 34.43 0.00 43.79 1.75
1376 3921 5.909760 ACACATCCTAGCTAGGGATATTCT 58.090 41.667 34.43 12.40 43.79 2.40
1377 3922 5.719085 ACACATCCTAGCTAGGGATATTCTG 59.281 44.000 34.43 21.87 43.79 3.02
1378 3923 5.719085 CACATCCTAGCTAGGGATATTCTGT 59.281 44.000 34.43 22.42 43.79 3.41
1380 3925 4.936802 TCCTAGCTAGGGATATTCTGTCC 58.063 47.826 34.43 0.00 43.79 4.02
1381 3926 4.357097 TCCTAGCTAGGGATATTCTGTCCA 59.643 45.833 34.43 11.84 43.79 4.02
1430 4090 0.250727 GAACCTGCTTGGCTGTGGTA 60.251 55.000 0.00 0.00 40.22 3.25
1494 4155 2.027653 TGATGCGACCATACTGAACCAA 60.028 45.455 0.00 0.00 0.00 3.67
1533 4194 4.459089 GACCTGAGAGCCGCCACC 62.459 72.222 0.00 0.00 0.00 4.61
1590 4251 2.851263 TCATGAAGCAAACCTACCGT 57.149 45.000 0.00 0.00 0.00 4.83
1638 4299 0.535335 ACATCACCGAACGCACCTAT 59.465 50.000 0.00 0.00 0.00 2.57
1641 4302 1.216977 CACCGAACGCACCTATGGA 59.783 57.895 0.00 0.00 0.00 3.41
1658 4319 6.846505 ACCTATGGAGATCATCAGAAGGTTAA 59.153 38.462 14.14 0.00 37.67 2.01
1664 4327 7.148018 TGGAGATCATCAGAAGGTTAATTTTGC 60.148 37.037 0.00 0.00 0.00 3.68
1765 4434 1.001860 TCGTGTGTGGATCAATGCAGA 59.998 47.619 0.00 0.00 0.00 4.26
1852 4521 1.504647 CGACGCGAGGGAGCTGTATA 61.505 60.000 15.93 0.00 34.40 1.47
1854 4523 1.173444 ACGCGAGGGAGCTGTATAGG 61.173 60.000 15.93 0.00 34.40 2.57
1912 4581 1.066502 TCATCCGCATCTTCACCGAAA 60.067 47.619 0.00 0.00 0.00 3.46
1918 4587 1.159285 CATCTTCACCGAAAGCAGCA 58.841 50.000 0.00 0.00 0.00 4.41
1923 4592 4.269523 ACCGAAAGCAGCAGGGCA 62.270 61.111 0.00 0.00 35.83 5.36
1989 4658 1.630369 TCCCTGGAGAAGGTGATGTTG 59.370 52.381 0.00 0.00 45.78 3.33
1990 4659 1.340405 CCCTGGAGAAGGTGATGTTGG 60.340 57.143 0.00 0.00 45.78 3.77
2031 4701 3.710677 CTCCTCTCATCTTCCTTCCATGT 59.289 47.826 0.00 0.00 0.00 3.21
2044 4714 0.971959 TCCATGTGCAAATCAGGCCC 60.972 55.000 0.00 0.00 0.00 5.80
2093 4763 1.739466 GATGCTCACCGAATTTGCAGA 59.261 47.619 0.00 0.00 37.07 4.26
2096 4766 0.804989 CTCACCGAATTTGCAGACCC 59.195 55.000 0.00 0.00 0.00 4.46
2125 4795 1.343465 GAGACGACAGGGAACTTCCAA 59.657 52.381 10.11 0.00 40.21 3.53
2234 4904 3.860125 GCAACGCGGCGCTCATAA 61.860 61.111 30.54 0.00 0.00 1.90
2423 5094 0.473755 TCAATCGATCCCCCACATGG 59.526 55.000 0.00 0.00 0.00 3.66
2583 5260 7.626452 GCATCAGTACCTTCACTATTTCCAAAC 60.626 40.741 0.00 0.00 0.00 2.93
2600 5277 3.190327 CCAAACAACTCGCCATCAACATA 59.810 43.478 0.00 0.00 0.00 2.29
2646 5323 4.273480 CCCATCTTACACTGCTTTATTCCG 59.727 45.833 0.00 0.00 0.00 4.30
2810 5494 0.670546 ACCACATCTCGCCTTTCACG 60.671 55.000 0.00 0.00 0.00 4.35
2884 5569 4.199310 TCTCGCCTTCCATAAAATTCCAG 58.801 43.478 0.00 0.00 0.00 3.86
2885 5570 4.080582 TCTCGCCTTCCATAAAATTCCAGA 60.081 41.667 0.00 0.00 0.00 3.86
2957 5642 4.398673 AGGACTAGTTAAGGTGCTTCTACG 59.601 45.833 0.00 0.00 30.18 3.51
3034 5719 0.179113 CTTCTCTCTGCTTCCTCCGC 60.179 60.000 0.00 0.00 0.00 5.54
3076 5795 2.303022 ACCTGAAATGGACAGATGACGT 59.697 45.455 0.00 0.00 37.54 4.34
3110 5971 6.828273 CCACATAACATCCAGTCCATCTTAAA 59.172 38.462 0.00 0.00 0.00 1.52
3112 5973 8.906867 CACATAACATCCAGTCCATCTTAAATT 58.093 33.333 0.00 0.00 0.00 1.82
3116 5977 8.511604 AACATCCAGTCCATCTTAAATTACTG 57.488 34.615 0.00 0.00 35.29 2.74
3117 5978 7.633789 ACATCCAGTCCATCTTAAATTACTGT 58.366 34.615 0.00 0.00 34.02 3.55
3118 5979 8.109634 ACATCCAGTCCATCTTAAATTACTGTT 58.890 33.333 0.00 0.00 34.02 3.16
3119 5980 9.613428 CATCCAGTCCATCTTAAATTACTGTTA 57.387 33.333 0.00 0.00 34.02 2.41
3120 5981 9.614792 ATCCAGTCCATCTTAAATTACTGTTAC 57.385 33.333 0.00 0.00 34.02 2.50
3121 5982 8.598916 TCCAGTCCATCTTAAATTACTGTTACA 58.401 33.333 0.00 0.00 34.02 2.41
3122 5983 8.665685 CCAGTCCATCTTAAATTACTGTTACAC 58.334 37.037 0.00 0.00 34.02 2.90
3123 5984 9.214957 CAGTCCATCTTAAATTACTGTTACACA 57.785 33.333 0.00 0.00 31.82 3.72
3137 5998 5.778161 TGTTACACAGATGATGCGTTTAG 57.222 39.130 0.00 0.00 0.00 1.85
3138 5999 5.234752 TGTTACACAGATGATGCGTTTAGT 58.765 37.500 0.00 0.00 0.00 2.24
3139 6000 6.391537 TGTTACACAGATGATGCGTTTAGTA 58.608 36.000 0.00 0.00 0.00 1.82
3140 6001 6.309494 TGTTACACAGATGATGCGTTTAGTAC 59.691 38.462 0.00 0.00 0.00 2.73
3141 6002 4.816392 ACACAGATGATGCGTTTAGTACA 58.184 39.130 0.00 0.00 0.00 2.90
3142 6003 5.234752 ACACAGATGATGCGTTTAGTACAA 58.765 37.500 0.00 0.00 0.00 2.41
3143 6004 5.120208 ACACAGATGATGCGTTTAGTACAAC 59.880 40.000 0.00 0.00 0.00 3.32
3144 6005 5.120053 CACAGATGATGCGTTTAGTACAACA 59.880 40.000 0.00 0.00 0.00 3.33
3145 6006 5.874810 ACAGATGATGCGTTTAGTACAACAT 59.125 36.000 0.00 0.00 0.00 2.71
3146 6007 7.010091 CACAGATGATGCGTTTAGTACAACATA 59.990 37.037 0.00 0.00 0.00 2.29
3147 6008 7.547722 ACAGATGATGCGTTTAGTACAACATAA 59.452 33.333 0.00 0.00 0.00 1.90
3148 6009 7.846107 CAGATGATGCGTTTAGTACAACATAAC 59.154 37.037 0.00 0.00 0.00 1.89
3149 6010 7.547722 AGATGATGCGTTTAGTACAACATAACA 59.452 33.333 0.00 0.00 0.00 2.41
3150 6011 7.422878 TGATGCGTTTAGTACAACATAACAA 57.577 32.000 0.00 0.00 0.00 2.83
3151 6012 7.292292 TGATGCGTTTAGTACAACATAACAAC 58.708 34.615 0.00 0.00 0.00 3.32
3152 6013 5.988092 TGCGTTTAGTACAACATAACAACC 58.012 37.500 0.00 0.00 0.00 3.77
3153 6014 5.759273 TGCGTTTAGTACAACATAACAACCT 59.241 36.000 0.00 0.00 0.00 3.50
3154 6015 6.075280 GCGTTTAGTACAACATAACAACCTG 58.925 40.000 0.00 0.00 0.00 4.00
3155 6016 6.075280 CGTTTAGTACAACATAACAACCTGC 58.925 40.000 0.00 0.00 0.00 4.85
3156 6017 6.073440 CGTTTAGTACAACATAACAACCTGCT 60.073 38.462 0.00 0.00 0.00 4.24
3157 6018 6.795098 TTAGTACAACATAACAACCTGCTG 57.205 37.500 0.00 0.00 0.00 4.41
3158 6019 4.714632 AGTACAACATAACAACCTGCTGT 58.285 39.130 0.00 0.00 0.00 4.40
3159 6020 5.130350 AGTACAACATAACAACCTGCTGTT 58.870 37.500 0.00 0.00 42.20 3.16
3160 6021 6.292923 AGTACAACATAACAACCTGCTGTTA 58.707 36.000 0.00 0.00 43.89 2.41
3162 6023 8.098286 AGTACAACATAACAACCTGCTGTTATA 58.902 33.333 8.31 0.00 46.13 0.98
3163 6024 7.753309 ACAACATAACAACCTGCTGTTATAA 57.247 32.000 8.31 0.00 46.13 0.98
3164 6025 8.172352 ACAACATAACAACCTGCTGTTATAAA 57.828 30.769 8.31 0.00 46.13 1.40
3165 6026 8.802267 ACAACATAACAACCTGCTGTTATAAAT 58.198 29.630 8.31 0.00 46.13 1.40
3166 6027 9.289303 CAACATAACAACCTGCTGTTATAAATC 57.711 33.333 8.31 0.00 46.13 2.17
3167 6028 8.574251 ACATAACAACCTGCTGTTATAAATCA 57.426 30.769 8.31 0.00 46.13 2.57
3168 6029 8.458843 ACATAACAACCTGCTGTTATAAATCAC 58.541 33.333 8.31 0.00 46.13 3.06
3169 6030 8.677300 CATAACAACCTGCTGTTATAAATCACT 58.323 33.333 8.31 0.00 46.13 3.41
3170 6031 6.500684 ACAACCTGCTGTTATAAATCACTG 57.499 37.500 0.00 0.00 34.69 3.66
3171 6032 6.003950 ACAACCTGCTGTTATAAATCACTGT 58.996 36.000 0.00 0.00 34.69 3.55
3172 6033 6.490040 ACAACCTGCTGTTATAAATCACTGTT 59.510 34.615 0.00 0.00 34.69 3.16
3173 6034 7.663905 ACAACCTGCTGTTATAAATCACTGTTA 59.336 33.333 0.00 0.00 34.69 2.41
3174 6035 7.611213 ACCTGCTGTTATAAATCACTGTTAC 57.389 36.000 0.00 0.00 0.00 2.50
3175 6036 7.165485 ACCTGCTGTTATAAATCACTGTTACA 58.835 34.615 0.00 0.00 0.00 2.41
3176 6037 7.663905 ACCTGCTGTTATAAATCACTGTTACAA 59.336 33.333 0.00 0.00 0.00 2.41
3177 6038 8.511321 CCTGCTGTTATAAATCACTGTTACAAA 58.489 33.333 0.00 0.00 0.00 2.83
3178 6039 9.546909 CTGCTGTTATAAATCACTGTTACAAAG 57.453 33.333 0.00 0.00 0.00 2.77
3179 6040 9.278978 TGCTGTTATAAATCACTGTTACAAAGA 57.721 29.630 0.00 0.00 0.00 2.52
3186 6047 7.765695 AAATCACTGTTACAAAGATGATGGT 57.234 32.000 0.97 0.00 0.00 3.55
3187 6048 8.862325 AAATCACTGTTACAAAGATGATGGTA 57.138 30.769 0.97 0.00 0.00 3.25
3188 6049 7.849804 ATCACTGTTACAAAGATGATGGTAC 57.150 36.000 0.00 0.00 0.00 3.34
3189 6050 6.170506 TCACTGTTACAAAGATGATGGTACC 58.829 40.000 4.43 4.43 0.00 3.34
3190 6051 5.937540 CACTGTTACAAAGATGATGGTACCA 59.062 40.000 18.99 18.99 0.00 3.25
3191 6052 6.092670 CACTGTTACAAAGATGATGGTACCAG 59.907 42.308 21.41 6.36 0.00 4.00
3192 6053 6.013725 ACTGTTACAAAGATGATGGTACCAGA 60.014 38.462 21.41 9.85 0.00 3.86
3193 6054 6.957631 TGTTACAAAGATGATGGTACCAGAT 58.042 36.000 21.41 14.43 0.00 2.90
3194 6055 8.084985 TGTTACAAAGATGATGGTACCAGATA 57.915 34.615 21.41 9.28 0.00 1.98
3195 6056 8.544622 TGTTACAAAGATGATGGTACCAGATAA 58.455 33.333 21.41 5.92 0.00 1.75
3196 6057 8.827677 GTTACAAAGATGATGGTACCAGATAAC 58.172 37.037 21.41 12.55 0.00 1.89
3200 6061 9.559732 CAAAGATGATGGTACCAGATAACATAA 57.440 33.333 21.41 0.00 41.58 1.90
3217 6078 9.859692 GATAACATAAAGGTTAATGCTAACGAC 57.140 33.333 0.00 0.00 38.69 4.34
3225 6086 1.726853 AATGCTAACGACTCCACTGC 58.273 50.000 0.00 0.00 0.00 4.40
3229 6090 1.872237 GCTAACGACTCCACTGCACAA 60.872 52.381 0.00 0.00 0.00 3.33
3235 6096 2.359900 GACTCCACTGCACAATTAGGG 58.640 52.381 0.00 0.00 0.00 3.53
3311 6172 6.208204 AGAGTCCAGGTTTCTGATCAAAATTG 59.792 38.462 0.00 4.51 43.49 2.32
3321 6182 4.219070 TCTGATCAAAATTGACAGGCAAGG 59.781 41.667 17.60 0.00 40.42 3.61
3323 6184 2.676748 TCAAAATTGACAGGCAAGGGT 58.323 42.857 0.00 0.00 40.42 4.34
3324 6185 3.838565 TCAAAATTGACAGGCAAGGGTA 58.161 40.909 0.00 0.00 40.42 3.69
3361 6222 3.616821 CCAGCTGCAATGATGAATGTTTG 59.383 43.478 8.66 0.00 0.00 2.93
3364 6225 4.927425 AGCTGCAATGATGAATGTTTGTTC 59.073 37.500 1.02 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 131 1.850345 TGCCTAAAATACAGGGAGGGG 59.150 52.381 0.00 0.00 33.44 4.79
219 241 2.271800 CGCGAAACAAAGAGGCTCTAT 58.728 47.619 19.07 5.41 0.00 1.98
233 255 2.413108 GCGTTTTTAGAATCCCGCGAAA 60.413 45.455 8.23 0.00 0.00 3.46
237 259 0.247934 CCGCGTTTTTAGAATCCCGC 60.248 55.000 4.92 0.00 37.91 6.13
240 262 4.812626 TCTATTCCCGCGTTTTTAGAATCC 59.187 41.667 4.92 0.00 0.00 3.01
269 291 8.278408 CGATAAGTGTGACATTTCAATCCTATG 58.722 37.037 0.00 0.00 31.90 2.23
271 293 6.257849 GCGATAAGTGTGACATTTCAATCCTA 59.742 38.462 0.00 0.00 31.90 2.94
272 294 5.065218 GCGATAAGTGTGACATTTCAATCCT 59.935 40.000 0.00 0.00 31.90 3.24
273 295 5.163764 TGCGATAAGTGTGACATTTCAATCC 60.164 40.000 0.00 0.00 31.90 3.01
274 296 5.868257 TGCGATAAGTGTGACATTTCAATC 58.132 37.500 0.00 0.00 31.90 2.67
275 297 5.878332 TGCGATAAGTGTGACATTTCAAT 57.122 34.783 0.00 0.00 31.90 2.57
276 298 5.681337 TTGCGATAAGTGTGACATTTCAA 57.319 34.783 0.00 0.00 31.90 2.69
277 299 5.163764 GGATTGCGATAAGTGTGACATTTCA 60.164 40.000 0.00 0.00 0.00 2.69
312 334 3.598019 TTGGCTTTCCTTGATGCAATC 57.402 42.857 0.00 0.00 45.83 2.67
507 530 4.521256 TTGACTACAAATGTTAAGGGCACC 59.479 41.667 0.00 0.00 40.49 5.01
508 531 5.699097 TTGACTACAAATGTTAAGGGCAC 57.301 39.130 0.00 0.00 32.73 5.01
525 548 9.705290 GGTTAAATTTTCACCACATATTTGACT 57.295 29.630 12.35 0.00 30.23 3.41
526 549 8.931775 GGGTTAAATTTTCACCACATATTTGAC 58.068 33.333 16.98 0.00 31.50 3.18
527 550 8.651389 TGGGTTAAATTTTCACCACATATTTGA 58.349 29.630 16.98 0.00 31.50 2.69
528 551 8.839310 TGGGTTAAATTTTCACCACATATTTG 57.161 30.769 16.98 0.00 31.50 2.32
529 552 9.853177 TTTGGGTTAAATTTTCACCACATATTT 57.147 25.926 16.98 0.00 31.50 1.40
530 553 9.853177 TTTTGGGTTAAATTTTCACCACATATT 57.147 25.926 16.98 0.00 31.50 1.28
533 556 9.278978 GTATTTTGGGTTAAATTTTCACCACAT 57.721 29.630 16.98 10.43 31.50 3.21
534 557 8.265055 TGTATTTTGGGTTAAATTTTCACCACA 58.735 29.630 16.98 10.59 31.50 4.17
535 558 8.664211 TGTATTTTGGGTTAAATTTTCACCAC 57.336 30.769 16.98 8.78 31.50 4.16
536 559 9.853177 ATTGTATTTTGGGTTAAATTTTCACCA 57.147 25.926 16.98 10.92 31.50 4.17
683 706 8.251026 GGTTTTTCATAGGAATTTTCGAGGATT 58.749 33.333 0.00 0.00 31.93 3.01
684 707 7.615757 AGGTTTTTCATAGGAATTTTCGAGGAT 59.384 33.333 0.00 0.00 31.93 3.24
685 708 6.946009 AGGTTTTTCATAGGAATTTTCGAGGA 59.054 34.615 0.00 0.00 31.93 3.71
686 709 7.158099 AGGTTTTTCATAGGAATTTTCGAGG 57.842 36.000 0.00 0.00 31.93 4.63
687 710 8.915654 CAAAGGTTTTTCATAGGAATTTTCGAG 58.084 33.333 0.00 0.00 31.93 4.04
688 711 8.634444 TCAAAGGTTTTTCATAGGAATTTTCGA 58.366 29.630 0.00 0.00 31.93 3.71
689 712 8.810652 TCAAAGGTTTTTCATAGGAATTTTCG 57.189 30.769 0.00 0.00 31.93 3.46
695 718 9.762933 CTTTGATTCAAAGGTTTTTCATAGGAA 57.237 29.630 25.14 0.00 44.75 3.36
748 771 4.373348 TTTGGGTTAAACTTTCACCACG 57.627 40.909 7.11 0.00 31.50 4.94
852 3279 9.224267 TCTCTTTGAAAATTACAAGGATGAGAG 57.776 33.333 9.34 11.17 34.06 3.20
870 3297 5.651530 ACGCTAGATTCGATTTCTCTTTGA 58.348 37.500 0.00 0.00 0.00 2.69
1140 3608 3.236233 ACCACCGGCCGTTACACT 61.236 61.111 26.12 0.00 0.00 3.55
1159 3630 3.364964 CCGAAACCTGCACAATACAAGAC 60.365 47.826 0.00 0.00 0.00 3.01
1266 3739 4.156922 CGATGGTAGAGATCCTGATGGTAC 59.843 50.000 0.00 0.00 34.23 3.34
1367 3912 5.946377 ACTCAGTTTTTGGACAGAATATCCC 59.054 40.000 0.00 0.00 35.12 3.85
1373 3918 4.199310 CTCCACTCAGTTTTTGGACAGAA 58.801 43.478 0.00 0.00 34.35 3.02
1374 3919 3.199946 ACTCCACTCAGTTTTTGGACAGA 59.800 43.478 0.00 0.00 34.35 3.41
1375 3920 3.545703 ACTCCACTCAGTTTTTGGACAG 58.454 45.455 0.00 0.00 34.35 3.51
1376 3921 3.644966 ACTCCACTCAGTTTTTGGACA 57.355 42.857 0.00 0.00 34.35 4.02
1377 3922 4.511826 CAGTACTCCACTCAGTTTTTGGAC 59.488 45.833 0.00 0.00 34.35 4.02
1378 3923 4.703897 CAGTACTCCACTCAGTTTTTGGA 58.296 43.478 0.00 0.00 37.07 3.53
1380 3925 4.130118 AGCAGTACTCCACTCAGTTTTTG 58.870 43.478 0.00 0.00 34.26 2.44
1381 3926 4.381411 GAGCAGTACTCCACTCAGTTTTT 58.619 43.478 10.73 0.00 39.75 1.94
1466 4127 2.642996 TATGGTCGCATCACGCCCAG 62.643 60.000 0.00 0.00 43.23 4.45
1467 4128 2.726351 TATGGTCGCATCACGCCCA 61.726 57.895 0.00 0.00 43.23 5.36
1476 4137 1.943968 GCTTGGTTCAGTATGGTCGCA 60.944 52.381 0.00 0.00 36.16 5.10
1494 4155 1.153745 GATGTCGCCGTTGAGAGCT 60.154 57.895 0.00 0.00 0.00 4.09
1533 4194 1.067821 GTCCTGGAGCAGATAACCTCG 59.932 57.143 0.00 0.00 32.44 4.63
1539 4200 2.490148 CGGCGTCCTGGAGCAGATA 61.490 63.158 16.37 0.00 32.44 1.98
1590 4251 1.373748 GTAGCAACCGAACCTCGCA 60.374 57.895 0.00 0.00 38.82 5.10
1638 4299 7.148018 GCAAAATTAACCTTCTGATGATCTCCA 60.148 37.037 0.00 0.00 0.00 3.86
1641 4302 7.951347 AGCAAAATTAACCTTCTGATGATCT 57.049 32.000 0.00 0.00 0.00 2.75
1743 4412 2.225467 TGCATTGATCCACACACGAAA 58.775 42.857 0.00 0.00 0.00 3.46
1748 4417 4.811908 CAAAATCTGCATTGATCCACACA 58.188 39.130 0.00 0.00 0.00 3.72
1765 4434 0.887933 CCCAGGTACGCAAGCAAAAT 59.112 50.000 0.00 0.00 45.62 1.82
1936 4605 2.106683 GCTGGTAAGCGTTGGCGAT 61.107 57.895 0.00 0.00 46.35 4.58
1989 4658 4.276183 GGAGTTTCAAGAAAGTTGGAGACC 59.724 45.833 4.53 0.00 34.36 3.85
1990 4659 5.126779 AGGAGTTTCAAGAAAGTTGGAGAC 58.873 41.667 4.53 0.00 34.36 3.36
2001 4671 5.090139 AGGAAGATGAGAGGAGTTTCAAGA 58.910 41.667 0.00 0.00 0.00 3.02
2031 4701 1.714541 TTTTCTGGGCCTGATTTGCA 58.285 45.000 14.32 0.00 0.00 4.08
2093 4763 1.249407 GTCGTCTCACTCTTCAGGGT 58.751 55.000 0.00 0.00 0.00 4.34
2096 4766 1.201181 CCCTGTCGTCTCACTCTTCAG 59.799 57.143 0.00 0.00 0.00 3.02
2125 4795 1.153086 GATGGTCAGCAGCCCGAAT 60.153 57.895 0.00 0.00 0.00 3.34
2395 5065 1.590932 GGATCGATTGAGCATGCACT 58.409 50.000 21.98 0.00 30.14 4.40
2583 5260 3.935203 AGAACTATGTTGATGGCGAGTTG 59.065 43.478 0.00 0.00 0.00 3.16
2600 5277 9.774071 TGGGGTACTACTATAGTAAAAAGAACT 57.226 33.333 13.51 0.00 42.45 3.01
2632 5309 4.130118 AGATAAGGCGGAATAAAGCAGTG 58.870 43.478 0.00 0.00 34.54 3.66
2646 5323 1.807495 CGAGACGGGGGAGATAAGGC 61.807 65.000 0.00 0.00 0.00 4.35
2747 5427 6.410540 TGTTGCCAAACTATTGTTCCTTTTT 58.589 32.000 0.00 0.00 37.19 1.94
2884 5569 6.560253 TGGCTGTTGAAATAAACTTCTCTC 57.440 37.500 0.00 0.00 0.00 3.20
2885 5570 6.959639 TTGGCTGTTGAAATAAACTTCTCT 57.040 33.333 0.00 0.00 0.00 3.10
2957 5642 9.856488 TGAATCATAATAGAGCTTCCGTATAAC 57.144 33.333 0.00 0.00 0.00 1.89
3034 5719 5.104735 AGGTATTTTGGAGGCTCACTTCTAG 60.105 44.000 17.69 0.00 0.00 2.43
3076 5795 7.011499 ACTGGATGTTATGTGGTACTAAACA 57.989 36.000 0.00 0.00 34.81 2.83
3120 5981 5.120053 TGTTGTACTAAACGCATCATCTGTG 59.880 40.000 0.00 0.00 41.32 3.66
3121 5982 5.234752 TGTTGTACTAAACGCATCATCTGT 58.765 37.500 0.00 0.00 32.47 3.41
3122 5983 5.778161 TGTTGTACTAAACGCATCATCTG 57.222 39.130 0.00 0.00 32.47 2.90
3123 5984 7.547722 TGTTATGTTGTACTAAACGCATCATCT 59.452 33.333 0.00 0.00 32.47 2.90
3124 5985 7.680982 TGTTATGTTGTACTAAACGCATCATC 58.319 34.615 0.00 0.00 32.47 2.92
3125 5986 7.603963 TGTTATGTTGTACTAAACGCATCAT 57.396 32.000 0.00 0.00 32.47 2.45
3126 5987 7.292292 GTTGTTATGTTGTACTAAACGCATCA 58.708 34.615 0.00 0.00 32.47 3.07
3127 5988 6.739550 GGTTGTTATGTTGTACTAAACGCATC 59.260 38.462 0.00 0.00 32.47 3.91
3128 5989 6.428771 AGGTTGTTATGTTGTACTAAACGCAT 59.571 34.615 0.00 0.00 32.47 4.73
3129 5990 5.759273 AGGTTGTTATGTTGTACTAAACGCA 59.241 36.000 0.00 0.00 32.47 5.24
3130 5991 6.075280 CAGGTTGTTATGTTGTACTAAACGC 58.925 40.000 0.00 0.00 32.47 4.84
3131 5992 6.073440 AGCAGGTTGTTATGTTGTACTAAACG 60.073 38.462 0.00 0.00 32.47 3.60
3132 5993 7.075741 CAGCAGGTTGTTATGTTGTACTAAAC 58.924 38.462 0.00 0.00 0.00 2.01
3133 5994 6.768861 ACAGCAGGTTGTTATGTTGTACTAAA 59.231 34.615 0.00 0.00 38.82 1.85
3134 5995 6.292923 ACAGCAGGTTGTTATGTTGTACTAA 58.707 36.000 0.00 0.00 38.82 2.24
3135 5996 5.860611 ACAGCAGGTTGTTATGTTGTACTA 58.139 37.500 0.00 0.00 38.82 1.82
3136 5997 4.714632 ACAGCAGGTTGTTATGTTGTACT 58.285 39.130 0.00 0.00 38.82 2.73
3137 5998 5.432885 AACAGCAGGTTGTTATGTTGTAC 57.567 39.130 0.00 0.00 39.54 2.90
3145 6006 7.663905 ACAGTGATTTATAACAGCAGGTTGTTA 59.336 33.333 10.45 10.45 44.87 2.41
3146 6007 6.490040 ACAGTGATTTATAACAGCAGGTTGTT 59.510 34.615 6.73 6.73 43.34 2.83
3147 6008 6.003950 ACAGTGATTTATAACAGCAGGTTGT 58.996 36.000 0.00 0.60 40.73 3.32
3148 6009 6.500684 ACAGTGATTTATAACAGCAGGTTG 57.499 37.500 0.00 0.00 40.73 3.77
3149 6010 7.663905 TGTAACAGTGATTTATAACAGCAGGTT 59.336 33.333 0.00 0.00 43.62 3.50
3150 6011 7.165485 TGTAACAGTGATTTATAACAGCAGGT 58.835 34.615 0.00 0.00 0.00 4.00
3151 6012 7.609760 TGTAACAGTGATTTATAACAGCAGG 57.390 36.000 0.00 0.00 0.00 4.85
3152 6013 9.546909 CTTTGTAACAGTGATTTATAACAGCAG 57.453 33.333 0.00 0.00 0.00 4.24
3153 6014 9.278978 TCTTTGTAACAGTGATTTATAACAGCA 57.721 29.630 0.00 0.00 0.00 4.41
3160 6021 9.466497 ACCATCATCTTTGTAACAGTGATTTAT 57.534 29.630 0.00 0.00 0.00 1.40
3161 6022 8.862325 ACCATCATCTTTGTAACAGTGATTTA 57.138 30.769 0.00 0.00 0.00 1.40
3162 6023 7.765695 ACCATCATCTTTGTAACAGTGATTT 57.234 32.000 0.00 0.00 0.00 2.17
3163 6024 7.336931 GGTACCATCATCTTTGTAACAGTGATT 59.663 37.037 7.15 0.00 0.00 2.57
3164 6025 6.823689 GGTACCATCATCTTTGTAACAGTGAT 59.176 38.462 7.15 0.00 0.00 3.06
3165 6026 6.170506 GGTACCATCATCTTTGTAACAGTGA 58.829 40.000 7.15 0.00 0.00 3.41
3166 6027 5.937540 TGGTACCATCATCTTTGTAACAGTG 59.062 40.000 11.60 0.00 0.00 3.66
3167 6028 6.013725 TCTGGTACCATCATCTTTGTAACAGT 60.014 38.462 16.75 0.00 45.10 3.55
3168 6029 6.406370 TCTGGTACCATCATCTTTGTAACAG 58.594 40.000 16.75 7.13 45.83 3.16
3169 6030 6.367374 TCTGGTACCATCATCTTTGTAACA 57.633 37.500 16.75 0.00 30.71 2.41
3170 6031 8.827677 GTTATCTGGTACCATCATCTTTGTAAC 58.172 37.037 16.75 7.08 0.00 2.50
3171 6032 8.544622 TGTTATCTGGTACCATCATCTTTGTAA 58.455 33.333 16.75 0.00 0.00 2.41
3172 6033 8.084985 TGTTATCTGGTACCATCATCTTTGTA 57.915 34.615 16.75 0.00 0.00 2.41
3173 6034 6.957631 TGTTATCTGGTACCATCATCTTTGT 58.042 36.000 16.75 0.00 0.00 2.83
3174 6035 9.559732 TTATGTTATCTGGTACCATCATCTTTG 57.440 33.333 16.75 0.56 0.00 2.77
3176 6037 9.784531 CTTTATGTTATCTGGTACCATCATCTT 57.215 33.333 16.75 6.49 0.00 2.40
3177 6038 8.378565 CCTTTATGTTATCTGGTACCATCATCT 58.621 37.037 16.75 1.18 0.00 2.90
3178 6039 8.157476 ACCTTTATGTTATCTGGTACCATCATC 58.843 37.037 16.75 6.21 0.00 2.92
3179 6040 8.045720 ACCTTTATGTTATCTGGTACCATCAT 57.954 34.615 16.75 12.99 0.00 2.45
3180 6041 7.446106 ACCTTTATGTTATCTGGTACCATCA 57.554 36.000 16.75 5.52 0.00 3.07
3181 6042 9.841295 TTAACCTTTATGTTATCTGGTACCATC 57.159 33.333 16.75 4.80 31.19 3.51
3183 6044 9.621629 CATTAACCTTTATGTTATCTGGTACCA 57.378 33.333 15.39 15.39 31.19 3.25
3184 6045 8.565416 GCATTAACCTTTATGTTATCTGGTACC 58.435 37.037 4.43 4.43 31.19 3.34
3185 6046 9.338622 AGCATTAACCTTTATGTTATCTGGTAC 57.661 33.333 0.00 0.00 31.19 3.34
3187 6048 9.914834 TTAGCATTAACCTTTATGTTATCTGGT 57.085 29.630 0.00 0.00 33.19 4.00
3189 6050 9.864034 CGTTAGCATTAACCTTTATGTTATCTG 57.136 33.333 0.00 0.00 36.60 2.90
3190 6051 9.826574 TCGTTAGCATTAACCTTTATGTTATCT 57.173 29.630 0.00 0.00 36.60 1.98
3191 6052 9.859692 GTCGTTAGCATTAACCTTTATGTTATC 57.140 33.333 0.00 0.00 36.60 1.75
3192 6053 9.609346 AGTCGTTAGCATTAACCTTTATGTTAT 57.391 29.630 0.00 0.00 36.60 1.89
3193 6054 9.090692 GAGTCGTTAGCATTAACCTTTATGTTA 57.909 33.333 0.00 0.00 36.60 2.41
3194 6055 7.065443 GGAGTCGTTAGCATTAACCTTTATGTT 59.935 37.037 0.00 0.00 36.60 2.71
3195 6056 6.537660 GGAGTCGTTAGCATTAACCTTTATGT 59.462 38.462 0.00 0.00 36.60 2.29
3196 6057 6.537301 TGGAGTCGTTAGCATTAACCTTTATG 59.463 38.462 0.00 0.00 36.60 1.90
3200 6061 4.020485 AGTGGAGTCGTTAGCATTAACCTT 60.020 41.667 0.00 0.00 36.60 3.50
3217 6078 2.636830 CTCCCTAATTGTGCAGTGGAG 58.363 52.381 0.00 0.00 32.70 3.86
3225 6086 3.319122 GCCTATTTGCCTCCCTAATTGTG 59.681 47.826 0.00 0.00 0.00 3.33
3229 6090 3.971468 TTGCCTATTTGCCTCCCTAAT 57.029 42.857 0.00 0.00 0.00 1.73
3235 6096 6.096282 TGGTTATTACTTTGCCTATTTGCCTC 59.904 38.462 0.00 0.00 0.00 4.70
3311 6172 4.137543 CTCCATTTATACCCTTGCCTGTC 58.862 47.826 0.00 0.00 0.00 3.51
3361 6222 5.420409 CCTTTACTGGGAGTGTAGATGAAC 58.580 45.833 0.00 0.00 0.00 3.18
3364 6225 3.197766 TGCCTTTACTGGGAGTGTAGATG 59.802 47.826 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.