Multiple sequence alignment - TraesCS1D01G075200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G075200 chr1D 100.000 3175 0 0 1 3175 56885962 56889136 0.000000e+00 5864.0
1 TraesCS1D01G075200 chr1D 91.051 894 66 9 411 1296 415405201 415406088 0.000000e+00 1195.0
2 TraesCS1D01G075200 chr1D 93.019 573 17 12 2604 3175 460799073 460799623 0.000000e+00 815.0
3 TraesCS1D01G075200 chr1D 89.048 557 26 14 2621 3175 442320432 442320955 0.000000e+00 658.0
4 TraesCS1D01G075200 chr1D 89.048 557 26 14 2621 3175 479817298 479816775 0.000000e+00 658.0
5 TraesCS1D01G075200 chr1D 97.753 89 1 1 2621 2708 415407220 415407308 5.490000e-33 152.0
6 TraesCS1D01G075200 chr2D 94.930 1992 48 24 1193 3175 625377317 625375370 0.000000e+00 3070.0
7 TraesCS1D01G075200 chr2D 93.465 1010 48 2 1405 2413 125178415 125179407 0.000000e+00 1483.0
8 TraesCS1D01G075200 chr2D 96.000 725 26 3 411 1135 625378059 625377338 0.000000e+00 1175.0
9 TraesCS1D01G075200 chr2D 90.604 894 70 8 411 1296 606638483 606639370 0.000000e+00 1173.0
10 TraesCS1D01G075200 chr6A 93.327 2098 96 7 411 2501 36383050 36380990 0.000000e+00 3059.0
11 TraesCS1D01G075200 chr6A 90.184 652 36 14 2525 3175 36380909 36380285 0.000000e+00 824.0
12 TraesCS1D01G075200 chr5A 93.136 2098 98 9 411 2501 214949452 214947394 0.000000e+00 3035.0
13 TraesCS1D01G075200 chr5A 92.806 1404 52 8 1186 2578 426560232 426558867 0.000000e+00 1988.0
14 TraesCS1D01G075200 chr5A 87.115 877 82 12 406 1258 637101783 637100914 0.000000e+00 965.0
15 TraesCS1D01G075200 chr5A 92.178 652 25 14 2525 3175 214947318 214946692 0.000000e+00 898.0
16 TraesCS1D01G075200 chr3D 89.270 1836 85 36 1405 3174 600643180 600644969 0.000000e+00 2196.0
17 TraesCS1D01G075200 chr3D 88.030 1487 82 29 1405 2835 545926944 545928390 0.000000e+00 1672.0
18 TraesCS1D01G075200 chr7A 90.942 1634 64 31 1186 2810 546537232 546538790 0.000000e+00 2121.0
19 TraesCS1D01G075200 chr7A 92.796 1402 54 7 1186 2578 126758546 126759909 0.000000e+00 1986.0
20 TraesCS1D01G075200 chr7A 86.508 882 76 15 412 1258 299415306 299416179 0.000000e+00 929.0
21 TraesCS1D01G075200 chr5D 91.747 1454 61 21 1405 2853 486010358 486008959 0.000000e+00 1965.0
22 TraesCS1D01G075200 chr5D 86.942 1838 113 37 1405 3172 426479965 426481745 0.000000e+00 1947.0
23 TraesCS1D01G075200 chr5D 91.051 894 65 9 411 1296 351816966 351816080 0.000000e+00 1194.0
24 TraesCS1D01G075200 chr5D 90.736 842 52 10 411 1245 486011365 486010543 0.000000e+00 1099.0
25 TraesCS1D01G075200 chr5D 89.228 557 25 14 2621 3175 430989401 430988878 0.000000e+00 664.0
26 TraesCS1D01G075200 chr5D 93.902 164 9 1 1244 1407 486010623 486010461 2.450000e-61 246.0
27 TraesCS1D01G075200 chr5D 92.857 56 4 0 174 229 184089505 184089450 7.300000e-12 82.4
28 TraesCS1D01G075200 chr3B 93.030 1320 51 22 1265 2574 615635844 615637132 0.000000e+00 1890.0
29 TraesCS1D01G075200 chr3B 93.617 893 49 4 411 1296 615635063 615635954 0.000000e+00 1327.0
30 TraesCS1D01G075200 chr3B 87.903 248 8 10 2610 2856 615637132 615637358 4.040000e-69 272.0
31 TraesCS1D01G075200 chr3B 81.507 146 8 7 87 232 354417597 354417471 5.600000e-18 102.0
32 TraesCS1D01G075200 chr1A 90.745 1383 59 25 1186 2558 556694497 556695820 0.000000e+00 1781.0
33 TraesCS1D01G075200 chr1A 93.333 750 48 2 411 1160 556662916 556663663 0.000000e+00 1107.0
34 TraesCS1D01G075200 chrUn 90.260 1386 63 26 1186 2558 30901436 30902762 0.000000e+00 1746.0
35 TraesCS1D01G075200 chrUn 93.729 1164 34 10 1412 2574 26235391 26234266 0.000000e+00 1709.0
36 TraesCS1D01G075200 chrUn 97.753 89 1 1 2621 2708 29131083 29131171 5.490000e-33 152.0
37 TraesCS1D01G075200 chrUn 97.753 89 1 1 2621 2708 439947652 439947564 5.490000e-33 152.0
38 TraesCS1D01G075200 chr6B 90.147 1157 82 11 1512 2665 515041679 515040552 0.000000e+00 1476.0
39 TraesCS1D01G075200 chr2B 85.698 874 79 15 411 1258 183540042 183540895 0.000000e+00 880.0
40 TraesCS1D01G075200 chr4D 89.408 557 24 14 2621 3175 374043202 374043725 0.000000e+00 669.0
41 TraesCS1D01G075200 chr4D 88.669 556 30 12 2621 3175 374747490 374746967 0.000000e+00 647.0
42 TraesCS1D01G075200 chr4D 88.356 146 14 1 87 232 235668727 235668869 4.210000e-39 172.0
43 TraesCS1D01G075200 chr4D 88.571 140 13 1 87 226 235643991 235644127 1.960000e-37 167.0
44 TraesCS1D01G075200 chr6D 88.669 556 30 11 2621 3175 464131319 464131842 0.000000e+00 647.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G075200 chr1D 56885962 56889136 3174 False 5864.000000 5864 100.000000 1 3175 1 chr1D.!!$F1 3174
1 TraesCS1D01G075200 chr1D 460799073 460799623 550 False 815.000000 815 93.019000 2604 3175 1 chr1D.!!$F3 571
2 TraesCS1D01G075200 chr1D 415405201 415407308 2107 False 673.500000 1195 94.402000 411 2708 2 chr1D.!!$F4 2297
3 TraesCS1D01G075200 chr1D 442320432 442320955 523 False 658.000000 658 89.048000 2621 3175 1 chr1D.!!$F2 554
4 TraesCS1D01G075200 chr1D 479816775 479817298 523 True 658.000000 658 89.048000 2621 3175 1 chr1D.!!$R1 554
5 TraesCS1D01G075200 chr2D 625375370 625378059 2689 True 2122.500000 3070 95.465000 411 3175 2 chr2D.!!$R1 2764
6 TraesCS1D01G075200 chr2D 125178415 125179407 992 False 1483.000000 1483 93.465000 1405 2413 1 chr2D.!!$F1 1008
7 TraesCS1D01G075200 chr2D 606638483 606639370 887 False 1173.000000 1173 90.604000 411 1296 1 chr2D.!!$F2 885
8 TraesCS1D01G075200 chr6A 36380285 36383050 2765 True 1941.500000 3059 91.755500 411 3175 2 chr6A.!!$R1 2764
9 TraesCS1D01G075200 chr5A 426558867 426560232 1365 True 1988.000000 1988 92.806000 1186 2578 1 chr5A.!!$R1 1392
10 TraesCS1D01G075200 chr5A 214946692 214949452 2760 True 1966.500000 3035 92.657000 411 3175 2 chr5A.!!$R3 2764
11 TraesCS1D01G075200 chr5A 637100914 637101783 869 True 965.000000 965 87.115000 406 1258 1 chr5A.!!$R2 852
12 TraesCS1D01G075200 chr3D 600643180 600644969 1789 False 2196.000000 2196 89.270000 1405 3174 1 chr3D.!!$F2 1769
13 TraesCS1D01G075200 chr3D 545926944 545928390 1446 False 1672.000000 1672 88.030000 1405 2835 1 chr3D.!!$F1 1430
14 TraesCS1D01G075200 chr7A 546537232 546538790 1558 False 2121.000000 2121 90.942000 1186 2810 1 chr7A.!!$F3 1624
15 TraesCS1D01G075200 chr7A 126758546 126759909 1363 False 1986.000000 1986 92.796000 1186 2578 1 chr7A.!!$F1 1392
16 TraesCS1D01G075200 chr7A 299415306 299416179 873 False 929.000000 929 86.508000 412 1258 1 chr7A.!!$F2 846
17 TraesCS1D01G075200 chr5D 426479965 426481745 1780 False 1947.000000 1947 86.942000 1405 3172 1 chr5D.!!$F1 1767
18 TraesCS1D01G075200 chr5D 351816080 351816966 886 True 1194.000000 1194 91.051000 411 1296 1 chr5D.!!$R2 885
19 TraesCS1D01G075200 chr5D 486008959 486011365 2406 True 1103.333333 1965 92.128333 411 2853 3 chr5D.!!$R4 2442
20 TraesCS1D01G075200 chr5D 430988878 430989401 523 True 664.000000 664 89.228000 2621 3175 1 chr5D.!!$R3 554
21 TraesCS1D01G075200 chr3B 615635063 615637358 2295 False 1163.000000 1890 91.516667 411 2856 3 chr3B.!!$F1 2445
22 TraesCS1D01G075200 chr1A 556694497 556695820 1323 False 1781.000000 1781 90.745000 1186 2558 1 chr1A.!!$F2 1372
23 TraesCS1D01G075200 chr1A 556662916 556663663 747 False 1107.000000 1107 93.333000 411 1160 1 chr1A.!!$F1 749
24 TraesCS1D01G075200 chrUn 30901436 30902762 1326 False 1746.000000 1746 90.260000 1186 2558 1 chrUn.!!$F2 1372
25 TraesCS1D01G075200 chrUn 26234266 26235391 1125 True 1709.000000 1709 93.729000 1412 2574 1 chrUn.!!$R1 1162
26 TraesCS1D01G075200 chr6B 515040552 515041679 1127 True 1476.000000 1476 90.147000 1512 2665 1 chr6B.!!$R1 1153
27 TraesCS1D01G075200 chr2B 183540042 183540895 853 False 880.000000 880 85.698000 411 1258 1 chr2B.!!$F1 847
28 TraesCS1D01G075200 chr4D 374043202 374043725 523 False 669.000000 669 89.408000 2621 3175 1 chr4D.!!$F3 554
29 TraesCS1D01G075200 chr4D 374746967 374747490 523 True 647.000000 647 88.669000 2621 3175 1 chr4D.!!$R1 554
30 TraesCS1D01G075200 chr6D 464131319 464131842 523 False 647.000000 647 88.669000 2621 3175 1 chr6D.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 360 0.031449 CCTAGCGGCAGAAGTAGAGC 59.969 60.0 1.45 0.0 0.00 4.09 F
366 367 0.390866 GCAGAAGTAGAGCAGCAGCA 60.391 55.0 3.17 0.0 45.49 4.41 F
369 370 0.726256 GAAGTAGAGCAGCAGCAAGC 59.274 55.0 3.17 0.0 45.49 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1322 1433 2.072298 CAAGCAGAGTACTCCAGCAAC 58.928 52.381 28.99 11.65 34.73 4.17 R
1627 1900 2.480759 GCCCATAGCTTCAACAATGCAG 60.481 50.000 0.00 0.00 38.99 4.41 R
2346 2690 3.039011 ACAGTACACAACCTCAGTTCCT 58.961 45.455 0.00 0.00 32.45 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.621763 GCGGTAGCAGCAGCAATAT 58.378 52.632 3.17 0.00 45.49 1.28
25 26 0.236711 GCGGTAGCAGCAGCAATATG 59.763 55.000 3.17 0.00 45.49 1.78
26 27 0.236711 CGGTAGCAGCAGCAATATGC 59.763 55.000 3.17 0.00 46.88 3.14
41 42 4.672024 GCAATATGCAATAGCTAGCAGCAG 60.672 45.833 18.83 10.03 43.27 4.24
42 43 2.634815 ATGCAATAGCTAGCAGCAGT 57.365 45.000 18.83 8.54 45.56 4.40
43 44 3.758755 ATGCAATAGCTAGCAGCAGTA 57.241 42.857 18.83 4.00 45.56 2.74
44 45 2.826428 TGCAATAGCTAGCAGCAGTAC 58.174 47.619 18.83 0.33 45.56 2.73
45 46 2.168313 TGCAATAGCTAGCAGCAGTACA 59.832 45.455 18.83 3.16 45.56 2.90
46 47 3.198068 GCAATAGCTAGCAGCAGTACAA 58.802 45.455 18.83 0.00 45.56 2.41
51 52 1.396301 GCTAGCAGCAGTACAAAGCAG 59.604 52.381 10.63 0.00 41.89 4.24
52 53 1.396301 CTAGCAGCAGTACAAAGCAGC 59.604 52.381 12.25 12.25 42.67 5.25
53 54 0.535780 AGCAGCAGTACAAAGCAGCA 60.536 50.000 19.00 0.00 44.45 4.41
54 55 0.109873 GCAGCAGTACAAAGCAGCAG 60.110 55.000 14.32 0.00 42.04 4.24
55 56 0.109873 CAGCAGTACAAAGCAGCAGC 60.110 55.000 0.00 0.00 42.56 5.25
56 57 0.535780 AGCAGTACAAAGCAGCAGCA 60.536 50.000 3.17 0.00 45.49 4.41
59 60 2.416747 CAGTACAAAGCAGCAGCAGTA 58.583 47.619 3.17 0.40 45.49 2.74
60 61 2.414481 CAGTACAAAGCAGCAGCAGTAG 59.586 50.000 3.17 0.00 45.49 2.57
61 62 1.129437 GTACAAAGCAGCAGCAGTAGC 59.871 52.381 3.17 0.00 45.49 3.58
62 63 0.535780 ACAAAGCAGCAGCAGTAGCA 60.536 50.000 3.17 0.00 45.49 3.49
63 64 0.168348 CAAAGCAGCAGCAGTAGCAG 59.832 55.000 3.17 0.00 45.49 4.24
69 70 2.124819 CAGCAGTAGCAGCAGGGG 60.125 66.667 0.00 0.00 45.49 4.79
70 71 2.284921 AGCAGTAGCAGCAGGGGA 60.285 61.111 0.00 0.00 45.49 4.81
72 73 1.451028 GCAGTAGCAGCAGGGGAAG 60.451 63.158 0.00 0.00 41.58 3.46
73 74 1.222936 CAGTAGCAGCAGGGGAAGG 59.777 63.158 0.00 0.00 0.00 3.46
74 75 1.081092 AGTAGCAGCAGGGGAAGGA 59.919 57.895 0.00 0.00 0.00 3.36
80 81 4.722700 GCAGGGGAAGGAGCGCAA 62.723 66.667 11.47 0.00 0.00 4.85
81 82 2.437359 CAGGGGAAGGAGCGCAAG 60.437 66.667 11.47 0.00 43.44 4.01
82 83 3.721706 AGGGGAAGGAGCGCAAGG 61.722 66.667 11.47 0.00 38.28 3.61
84 85 2.124942 GGGAAGGAGCGCAAGGAG 60.125 66.667 11.47 0.00 38.28 3.69
85 86 2.821810 GGAAGGAGCGCAAGGAGC 60.822 66.667 11.47 0.00 40.87 4.70
86 87 2.046892 GAAGGAGCGCAAGGAGCA 60.047 61.111 11.47 0.00 46.13 4.26
87 88 2.046507 AAGGAGCGCAAGGAGCAG 60.047 61.111 11.47 0.00 46.13 4.24
88 89 4.774503 AGGAGCGCAAGGAGCAGC 62.775 66.667 11.47 0.00 46.13 5.25
90 91 3.497932 GAGCGCAAGGAGCAGCAG 61.498 66.667 11.47 0.00 46.13 4.24
94 95 2.987547 GCAAGGAGCAGCAGCCAA 60.988 61.111 0.00 0.00 44.79 4.52
95 96 2.991076 GCAAGGAGCAGCAGCCAAG 61.991 63.158 0.00 0.59 44.79 3.61
96 97 2.675772 AAGGAGCAGCAGCCAAGC 60.676 61.111 0.00 0.00 43.56 4.01
97 98 3.502621 AAGGAGCAGCAGCCAAGCA 62.503 57.895 0.00 0.00 43.56 3.91
98 99 3.441290 GGAGCAGCAGCCAAGCAG 61.441 66.667 0.00 0.00 43.56 4.24
99 100 4.117661 GAGCAGCAGCCAAGCAGC 62.118 66.667 0.00 3.13 45.99 5.25
101 102 4.421479 GCAGCAGCCAAGCAGCAG 62.421 66.667 6.73 0.00 45.12 4.24
102 103 2.671963 CAGCAGCCAAGCAGCAGA 60.672 61.111 6.73 0.00 43.44 4.26
103 104 2.360100 AGCAGCCAAGCAGCAGAG 60.360 61.111 6.73 0.00 43.44 3.35
104 105 4.117661 GCAGCCAAGCAGCAGAGC 62.118 66.667 0.00 0.00 40.73 4.09
105 106 2.671963 CAGCCAAGCAGCAGAGCA 60.672 61.111 0.00 0.00 36.85 4.26
106 107 2.360100 AGCCAAGCAGCAGAGCAG 60.360 61.111 0.00 0.00 36.85 4.24
107 108 4.117661 GCCAAGCAGCAGAGCAGC 62.118 66.667 0.00 0.00 41.34 5.25
108 109 3.800863 CCAAGCAGCAGAGCAGCG 61.801 66.667 0.00 0.00 45.54 5.18
109 110 4.462417 CAAGCAGCAGAGCAGCGC 62.462 66.667 0.00 0.00 45.54 5.92
112 113 4.462417 GCAGCAGAGCAGCGCAAG 62.462 66.667 11.47 2.01 40.15 4.01
113 114 3.800863 CAGCAGAGCAGCGCAAGG 61.801 66.667 11.47 0.00 40.15 3.61
114 115 4.012811 AGCAGAGCAGCGCAAGGA 62.013 61.111 11.47 0.00 40.15 3.36
115 116 3.497932 GCAGAGCAGCGCAAGGAG 61.498 66.667 11.47 0.00 38.28 3.69
116 117 2.818714 CAGAGCAGCGCAAGGAGG 60.819 66.667 11.47 0.00 38.28 4.30
117 118 2.999648 AGAGCAGCGCAAGGAGGA 61.000 61.111 11.47 0.00 38.28 3.71
118 119 2.511145 GAGCAGCGCAAGGAGGAG 60.511 66.667 11.47 0.00 38.28 3.69
119 120 4.774503 AGCAGCGCAAGGAGGAGC 62.775 66.667 11.47 0.00 38.28 4.70
121 122 2.818714 CAGCGCAAGGAGGAGCAG 60.819 66.667 11.47 0.00 35.93 4.24
122 123 4.774503 AGCGCAAGGAGGAGCAGC 62.775 66.667 11.47 0.00 35.93 5.25
123 124 4.774503 GCGCAAGGAGGAGCAGCT 62.775 66.667 0.30 0.00 33.48 4.24
124 125 2.895680 CGCAAGGAGGAGCAGCTA 59.104 61.111 0.00 0.00 0.00 3.32
125 126 1.219124 CGCAAGGAGGAGCAGCTAA 59.781 57.895 0.00 0.00 0.00 3.09
126 127 0.809241 CGCAAGGAGGAGCAGCTAAG 60.809 60.000 0.00 0.00 0.00 2.18
127 128 0.251634 GCAAGGAGGAGCAGCTAAGT 59.748 55.000 0.00 0.00 0.00 2.24
128 129 1.482593 GCAAGGAGGAGCAGCTAAGTA 59.517 52.381 0.00 0.00 0.00 2.24
129 130 2.482839 GCAAGGAGGAGCAGCTAAGTAG 60.483 54.545 0.00 0.00 0.00 2.57
146 147 4.400961 GCGGCAGCAGGAGGAAGT 62.401 66.667 3.18 0.00 44.35 3.01
147 148 3.019003 GCGGCAGCAGGAGGAAGTA 62.019 63.158 3.18 0.00 44.35 2.24
148 149 1.142748 CGGCAGCAGGAGGAAGTAG 59.857 63.158 0.00 0.00 0.00 2.57
149 150 1.153269 GGCAGCAGGAGGAAGTAGC 60.153 63.158 0.00 0.00 0.00 3.58
150 151 1.599047 GCAGCAGGAGGAAGTAGCA 59.401 57.895 0.00 0.00 0.00 3.49
151 152 0.461693 GCAGCAGGAGGAAGTAGCAG 60.462 60.000 0.00 0.00 0.00 4.24
152 153 0.901124 CAGCAGGAGGAAGTAGCAGT 59.099 55.000 0.00 0.00 0.00 4.40
153 154 0.901124 AGCAGGAGGAAGTAGCAGTG 59.099 55.000 0.00 0.00 0.00 3.66
154 155 0.107945 GCAGGAGGAAGTAGCAGTGG 60.108 60.000 0.00 0.00 0.00 4.00
155 156 0.107945 CAGGAGGAAGTAGCAGTGGC 60.108 60.000 0.00 0.00 41.61 5.01
156 157 0.545309 AGGAGGAAGTAGCAGTGGCA 60.545 55.000 0.00 0.00 44.61 4.92
157 158 0.324943 GGAGGAAGTAGCAGTGGCAA 59.675 55.000 0.00 0.00 44.61 4.52
158 159 1.677217 GGAGGAAGTAGCAGTGGCAAG 60.677 57.143 0.00 0.00 44.61 4.01
159 160 0.322008 AGGAAGTAGCAGTGGCAAGC 60.322 55.000 5.13 5.13 44.61 4.01
160 161 0.606401 GGAAGTAGCAGTGGCAAGCA 60.606 55.000 14.54 0.00 44.61 3.91
161 162 1.238439 GAAGTAGCAGTGGCAAGCAA 58.762 50.000 14.54 0.00 44.61 3.91
162 163 1.198637 GAAGTAGCAGTGGCAAGCAAG 59.801 52.381 14.54 0.00 44.61 4.01
163 164 1.211190 GTAGCAGTGGCAAGCAAGC 59.789 57.895 14.54 3.31 44.61 4.01
164 165 1.228215 TAGCAGTGGCAAGCAAGCA 60.228 52.632 14.54 0.00 44.61 3.91
165 166 0.609957 TAGCAGTGGCAAGCAAGCAT 60.610 50.000 14.54 0.00 44.61 3.79
166 167 1.005394 GCAGTGGCAAGCAAGCATT 60.005 52.632 8.16 0.00 40.72 3.56
167 168 0.244450 GCAGTGGCAAGCAAGCATTA 59.756 50.000 8.16 0.00 40.72 1.90
168 169 1.734707 GCAGTGGCAAGCAAGCATTAG 60.735 52.381 8.16 0.00 40.72 1.73
169 170 0.529378 AGTGGCAAGCAAGCATTAGC 59.471 50.000 0.00 0.00 42.56 3.09
170 171 0.244450 GTGGCAAGCAAGCATTAGCA 59.756 50.000 0.00 0.00 45.49 3.49
171 172 0.528924 TGGCAAGCAAGCATTAGCAG 59.471 50.000 2.78 0.00 45.49 4.24
172 173 0.529378 GGCAAGCAAGCATTAGCAGT 59.471 50.000 2.78 0.00 45.49 4.40
173 174 1.745087 GGCAAGCAAGCATTAGCAGTA 59.255 47.619 2.78 0.00 45.49 2.74
174 175 2.223433 GGCAAGCAAGCATTAGCAGTAG 60.223 50.000 2.78 0.00 45.49 2.57
175 176 2.793933 GCAAGCAAGCATTAGCAGTAGC 60.794 50.000 0.00 0.00 45.49 3.58
176 177 2.408271 AGCAAGCATTAGCAGTAGCA 57.592 45.000 0.00 0.00 45.49 3.49
177 178 2.286872 AGCAAGCATTAGCAGTAGCAG 58.713 47.619 0.00 0.00 45.49 4.24
178 179 2.012673 GCAAGCATTAGCAGTAGCAGT 58.987 47.619 0.00 0.00 45.49 4.40
179 180 3.118629 AGCAAGCATTAGCAGTAGCAGTA 60.119 43.478 0.00 0.00 45.49 2.74
180 181 3.001736 GCAAGCATTAGCAGTAGCAGTAC 59.998 47.826 0.00 0.00 45.49 2.73
181 182 3.085443 AGCATTAGCAGTAGCAGTACG 57.915 47.619 0.00 0.00 45.49 3.67
182 183 1.523095 GCATTAGCAGTAGCAGTACGC 59.477 52.381 2.08 2.08 45.49 4.42
183 184 3.971824 GCATTAGCAGTAGCAGTACGCG 61.972 54.545 3.53 3.53 45.49 6.01
191 192 2.582498 GCAGTACGCGGTAGGCAG 60.582 66.667 12.47 0.00 43.84 4.85
192 193 2.582498 CAGTACGCGGTAGGCAGC 60.582 66.667 12.47 0.00 43.84 5.25
193 194 3.066190 AGTACGCGGTAGGCAGCA 61.066 61.111 12.47 0.00 43.84 4.41
194 195 2.582498 GTACGCGGTAGGCAGCAG 60.582 66.667 12.47 0.00 43.84 4.24
195 196 4.508128 TACGCGGTAGGCAGCAGC 62.508 66.667 12.47 0.00 43.84 5.25
212 213 4.093952 CGGCGGCAAGAGCAACAG 62.094 66.667 10.53 0.00 44.61 3.16
213 214 4.410743 GGCGGCAAGAGCAACAGC 62.411 66.667 3.07 0.00 44.61 4.40
214 215 3.663176 GCGGCAAGAGCAACAGCA 61.663 61.111 0.00 0.00 44.61 4.41
215 216 2.559840 CGGCAAGAGCAACAGCAG 59.440 61.111 0.00 0.00 44.61 4.24
216 217 2.960170 GGCAAGAGCAACAGCAGG 59.040 61.111 0.00 0.00 44.61 4.85
217 218 1.900498 GGCAAGAGCAACAGCAGGT 60.900 57.895 0.00 0.00 44.61 4.00
218 219 0.606401 GGCAAGAGCAACAGCAGGTA 60.606 55.000 0.00 0.00 44.61 3.08
219 220 0.801251 GCAAGAGCAACAGCAGGTAG 59.199 55.000 0.00 0.00 41.58 3.18
220 221 0.801251 CAAGAGCAACAGCAGGTAGC 59.199 55.000 0.00 0.00 46.19 3.58
229 230 2.870372 GCAGGTAGCAAGCAACGG 59.130 61.111 4.74 0.00 44.79 4.44
230 231 2.870372 CAGGTAGCAAGCAACGGC 59.130 61.111 0.00 0.00 41.61 5.68
231 232 1.965930 CAGGTAGCAAGCAACGGCA 60.966 57.895 0.00 0.00 44.61 5.69
232 233 1.002134 AGGTAGCAAGCAACGGCAT 60.002 52.632 0.00 0.00 44.61 4.40
233 234 0.609131 AGGTAGCAAGCAACGGCATT 60.609 50.000 0.00 0.00 44.61 3.56
234 235 0.179163 GGTAGCAAGCAACGGCATTC 60.179 55.000 0.00 0.00 44.61 2.67
235 236 0.521242 GTAGCAAGCAACGGCATTCG 60.521 55.000 0.00 0.00 44.61 3.34
236 237 0.672091 TAGCAAGCAACGGCATTCGA 60.672 50.000 0.00 0.00 44.61 3.71
237 238 1.512734 GCAAGCAACGGCATTCGAG 60.513 57.895 0.00 0.00 44.61 4.04
238 239 1.512734 CAAGCAACGGCATTCGAGC 60.513 57.895 0.00 0.00 44.61 5.03
239 240 1.965930 AAGCAACGGCATTCGAGCA 60.966 52.632 0.00 0.00 44.61 4.26
240 241 1.514678 AAGCAACGGCATTCGAGCAA 61.515 50.000 0.00 0.00 44.61 3.91
241 242 1.797537 GCAACGGCATTCGAGCAAC 60.798 57.895 0.00 0.00 42.43 4.17
242 243 1.573932 CAACGGCATTCGAGCAACA 59.426 52.632 0.00 0.00 42.43 3.33
243 244 0.453282 CAACGGCATTCGAGCAACAG 60.453 55.000 0.00 0.00 42.43 3.16
244 245 0.884704 AACGGCATTCGAGCAACAGT 60.885 50.000 0.00 0.00 42.43 3.55
245 246 0.037697 ACGGCATTCGAGCAACAGTA 60.038 50.000 0.00 0.00 42.43 2.74
246 247 0.647410 CGGCATTCGAGCAACAGTAG 59.353 55.000 0.00 0.00 42.43 2.57
247 248 1.726853 GGCATTCGAGCAACAGTAGT 58.273 50.000 0.00 0.00 35.83 2.73
248 249 1.394917 GGCATTCGAGCAACAGTAGTG 59.605 52.381 0.00 0.00 35.83 2.74
249 250 1.201965 GCATTCGAGCAACAGTAGTGC 60.202 52.381 0.00 0.00 0.00 4.40
250 251 1.394917 CATTCGAGCAACAGTAGTGCC 59.605 52.381 0.00 0.00 0.00 5.01
251 252 0.391228 TTCGAGCAACAGTAGTGCCA 59.609 50.000 0.00 0.00 0.00 4.92
252 253 0.319555 TCGAGCAACAGTAGTGCCAC 60.320 55.000 0.00 0.00 0.00 5.01
253 254 0.599991 CGAGCAACAGTAGTGCCACA 60.600 55.000 0.00 0.00 0.00 4.17
254 255 1.151668 GAGCAACAGTAGTGCCACAG 58.848 55.000 0.00 0.00 0.00 3.66
255 256 0.886490 AGCAACAGTAGTGCCACAGC 60.886 55.000 0.00 0.00 40.48 4.40
264 265 2.599281 TGCCACAGCAGCAAGCAT 60.599 55.556 0.00 0.00 46.52 3.79
265 266 2.926420 TGCCACAGCAGCAAGCATG 61.926 57.895 0.00 0.00 46.52 4.06
323 324 2.747460 GATCGTGGCCAGCAGCAA 60.747 61.111 5.11 0.00 46.50 3.91
324 325 3.044059 GATCGTGGCCAGCAGCAAC 62.044 63.158 5.11 0.00 46.50 4.17
325 326 3.848301 ATCGTGGCCAGCAGCAACA 62.848 57.895 5.11 0.00 46.91 3.33
326 327 3.594775 CGTGGCCAGCAGCAACAA 61.595 61.111 5.11 0.00 46.91 2.83
327 328 2.028043 GTGGCCAGCAGCAACAAC 59.972 61.111 5.11 0.00 45.71 3.32
328 329 2.441717 TGGCCAGCAGCAACAACA 60.442 55.556 0.00 0.00 46.50 3.33
329 330 1.833492 TGGCCAGCAGCAACAACAT 60.833 52.632 0.00 0.00 46.50 2.71
330 331 1.080298 GGCCAGCAGCAACAACATC 60.080 57.895 0.00 0.00 46.50 3.06
331 332 1.661480 GCCAGCAGCAACAACATCA 59.339 52.632 0.00 0.00 42.97 3.07
332 333 0.388134 GCCAGCAGCAACAACATCAG 60.388 55.000 0.00 0.00 42.97 2.90
333 334 0.388134 CCAGCAGCAACAACATCAGC 60.388 55.000 0.00 0.00 0.00 4.26
334 335 0.728129 CAGCAGCAACAACATCAGCG 60.728 55.000 0.00 0.00 0.00 5.18
335 336 1.168407 AGCAGCAACAACATCAGCGT 61.168 50.000 0.00 0.00 0.00 5.07
336 337 0.516877 GCAGCAACAACATCAGCGTA 59.483 50.000 0.00 0.00 0.00 4.42
337 338 1.464687 GCAGCAACAACATCAGCGTAG 60.465 52.381 0.00 0.00 0.00 3.51
354 355 2.266055 GCACCTAGCGGCAGAAGT 59.734 61.111 1.45 0.00 0.00 3.01
355 356 1.515954 GCACCTAGCGGCAGAAGTA 59.484 57.895 1.45 0.00 0.00 2.24
356 357 0.528684 GCACCTAGCGGCAGAAGTAG 60.529 60.000 1.45 0.00 0.00 2.57
357 358 1.103803 CACCTAGCGGCAGAAGTAGA 58.896 55.000 1.45 0.00 0.00 2.59
358 359 1.066303 CACCTAGCGGCAGAAGTAGAG 59.934 57.143 1.45 0.00 0.00 2.43
359 360 0.031449 CCTAGCGGCAGAAGTAGAGC 59.969 60.000 1.45 0.00 0.00 4.09
360 361 0.741326 CTAGCGGCAGAAGTAGAGCA 59.259 55.000 1.45 0.00 0.00 4.26
361 362 0.741326 TAGCGGCAGAAGTAGAGCAG 59.259 55.000 1.45 0.00 0.00 4.24
362 363 2.170434 GCGGCAGAAGTAGAGCAGC 61.170 63.158 0.00 0.00 41.72 5.25
363 364 1.216444 CGGCAGAAGTAGAGCAGCA 59.784 57.895 0.00 0.00 0.00 4.41
364 365 0.805322 CGGCAGAAGTAGAGCAGCAG 60.805 60.000 0.00 0.00 0.00 4.24
365 366 1.088910 GGCAGAAGTAGAGCAGCAGC 61.089 60.000 0.00 0.00 42.56 5.25
366 367 0.390866 GCAGAAGTAGAGCAGCAGCA 60.391 55.000 3.17 0.00 45.49 4.41
367 368 1.943046 GCAGAAGTAGAGCAGCAGCAA 60.943 52.381 3.17 0.00 45.49 3.91
368 369 2.001159 CAGAAGTAGAGCAGCAGCAAG 58.999 52.381 3.17 0.00 45.49 4.01
369 370 0.726256 GAAGTAGAGCAGCAGCAAGC 59.274 55.000 3.17 0.00 45.49 4.01
381 382 2.807895 GCAAGCAGCAATGGCACG 60.808 61.111 0.00 0.00 44.61 5.34
382 383 2.956194 CAAGCAGCAATGGCACGA 59.044 55.556 0.00 0.00 44.61 4.35
383 384 1.154093 CAAGCAGCAATGGCACGAG 60.154 57.895 0.00 0.00 44.61 4.18
384 385 2.986306 AAGCAGCAATGGCACGAGC 61.986 57.895 0.00 0.00 44.61 5.03
385 386 3.740397 GCAGCAATGGCACGAGCA 61.740 61.111 7.26 0.00 44.61 4.26
386 387 2.483745 CAGCAATGGCACGAGCAG 59.516 61.111 7.26 0.00 44.61 4.24
387 388 3.437795 AGCAATGGCACGAGCAGC 61.438 61.111 7.26 5.02 44.61 5.25
388 389 3.740397 GCAATGGCACGAGCAGCA 61.740 61.111 7.26 0.00 44.61 4.41
389 390 2.483745 CAATGGCACGAGCAGCAG 59.516 61.111 7.26 0.00 44.61 4.24
390 391 3.437795 AATGGCACGAGCAGCAGC 61.438 61.111 7.26 0.00 44.61 5.25
391 392 4.710167 ATGGCACGAGCAGCAGCA 62.710 61.111 7.26 0.00 45.49 4.41
392 393 4.933563 TGGCACGAGCAGCAGCAA 62.934 61.111 7.26 0.00 45.49 3.91
393 394 4.099170 GGCACGAGCAGCAGCAAG 62.099 66.667 7.26 0.00 45.49 4.01
394 395 4.755614 GCACGAGCAGCAGCAAGC 62.756 66.667 3.17 0.00 45.49 4.01
717 752 4.831307 CTCGTTCCCTCCGTCGCG 62.831 72.222 0.00 0.00 0.00 5.87
816 855 1.063867 AGTCTAGCCTCCCGTACATGT 60.064 52.381 2.69 2.69 0.00 3.21
946 991 1.221414 GTCTTTGTGCGAGCTTCTGT 58.779 50.000 0.00 0.00 0.00 3.41
981 1026 5.649395 CAGCCTTGAAGATCCAGATTACAAA 59.351 40.000 0.00 0.00 0.00 2.83
1073 1118 2.769209 AGGAATAGACACAGGCAGGAT 58.231 47.619 0.00 0.00 0.00 3.24
1105 1150 0.833949 TGCACAGCCGGTATGGATTA 59.166 50.000 1.90 0.00 42.00 1.75
1246 1317 6.038603 GGTCAAGCATGAGTATATTTTGCTGA 59.961 38.462 0.00 5.44 42.50 4.26
1322 1433 6.949352 AGGTCAAGCATGAGTATATTTTGG 57.051 37.500 0.00 0.00 35.88 3.28
1519 1764 4.455533 TGGCAATTGTAGTGATCTTGTGTC 59.544 41.667 7.40 0.00 0.00 3.67
1562 1835 6.513180 TCTGTTGGTGTTGTTGTTGTTTTTA 58.487 32.000 0.00 0.00 0.00 1.52
1590 1863 4.148838 AGGTAGCAATTGTGGCTTTGTTA 58.851 39.130 7.40 0.00 42.62 2.41
1627 1900 2.649129 GGCCCCCAACAATGCAGAC 61.649 63.158 0.00 0.00 0.00 3.51
1671 1947 5.782047 CAATGGTTGAAGATGCCAAAAGTA 58.218 37.500 0.00 0.00 35.74 2.24
2282 2609 9.171877 GAAGAAGATGAAAATGAGATTAGTGGT 57.828 33.333 0.00 0.00 0.00 4.16
2313 2640 3.328505 CTTTTGGGAATGATGGTTGTGC 58.671 45.455 0.00 0.00 0.00 4.57
2346 2690 6.664714 AGCATCTAGGAACTAAGAGTACTCA 58.335 40.000 24.44 4.18 42.17 3.41
2505 2856 6.887002 TGTGAACAATGGTTATGTATGGCTAA 59.113 34.615 0.00 0.00 37.36 3.09
2518 2917 6.176975 TGTATGGCTAAAATGAGTTGAACG 57.823 37.500 0.00 0.00 0.00 3.95
2705 3144 5.982516 GCAAACCACTCATGTCATACAAAAA 59.017 36.000 0.00 0.00 0.00 1.94
2723 3162 1.406903 AAAAGCTCTTGCCTGCAACT 58.593 45.000 0.00 0.00 40.80 3.16
2724 3163 1.406903 AAAGCTCTTGCCTGCAACTT 58.593 45.000 0.00 0.71 40.80 2.66
2725 3164 0.672342 AAGCTCTTGCCTGCAACTTG 59.328 50.000 0.00 0.00 40.80 3.16
2726 3165 1.177256 AGCTCTTGCCTGCAACTTGG 61.177 55.000 0.00 0.00 40.80 3.61
2733 3172 1.783284 GCCTGCAACTTGGCTTAAAC 58.217 50.000 7.42 0.00 45.26 2.01
2734 3173 1.605457 GCCTGCAACTTGGCTTAAACC 60.605 52.381 7.42 0.00 45.26 3.27
2735 3174 1.686052 CCTGCAACTTGGCTTAAACCA 59.314 47.619 0.00 0.00 38.16 3.67
2736 3175 2.545742 CCTGCAACTTGGCTTAAACCAC 60.546 50.000 0.00 0.00 40.19 4.16
2737 3176 2.100584 CTGCAACTTGGCTTAAACCACA 59.899 45.455 0.00 0.00 40.19 4.17
2738 3177 2.159170 TGCAACTTGGCTTAAACCACAC 60.159 45.455 0.00 0.00 40.19 3.82
2739 3178 2.159170 GCAACTTGGCTTAAACCACACA 60.159 45.455 0.00 0.00 40.19 3.72
2740 3179 3.492482 GCAACTTGGCTTAAACCACACAT 60.492 43.478 0.00 0.00 40.19 3.21
2741 3180 4.261825 GCAACTTGGCTTAAACCACACATA 60.262 41.667 0.00 0.00 40.19 2.29
2742 3181 5.566627 GCAACTTGGCTTAAACCACACATAT 60.567 40.000 0.00 0.00 40.19 1.78
2743 3182 5.643379 ACTTGGCTTAAACCACACATATG 57.357 39.130 0.00 0.00 40.19 1.78
2744 3183 5.321102 ACTTGGCTTAAACCACACATATGA 58.679 37.500 10.38 0.00 40.19 2.15
2745 3184 5.183140 ACTTGGCTTAAACCACACATATGAC 59.817 40.000 10.38 0.00 40.19 3.06
2746 3185 4.917385 TGGCTTAAACCACACATATGACT 58.083 39.130 10.38 0.00 33.75 3.41
2747 3186 4.941263 TGGCTTAAACCACACATATGACTC 59.059 41.667 10.38 0.00 33.75 3.36
2843 3310 6.374613 GGCTTAAACTAGAGCAACTAAACCAT 59.625 38.462 0.00 0.00 40.63 3.55
3107 3575 2.158608 ACAGTTGCACCTTTAAGCCTCT 60.159 45.455 0.00 0.00 0.00 3.69
3164 3632 4.950434 CAAAATTTGGGCAATGGATCAC 57.050 40.909 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.975363 GCTGCTGCTACCGCTTCTTG 61.975 60.000 8.53 0.00 36.97 3.02
1 2 1.743252 GCTGCTGCTACCGCTTCTT 60.743 57.895 8.53 0.00 36.97 2.52
2 3 2.125350 GCTGCTGCTACCGCTTCT 60.125 61.111 8.53 0.00 36.97 2.85
5 6 0.107456 ATATTGCTGCTGCTACCGCT 59.893 50.000 17.00 0.00 40.48 5.52
7 8 0.236711 GCATATTGCTGCTGCTACCG 59.763 55.000 17.00 2.94 40.96 4.02
8 9 1.311859 TGCATATTGCTGCTGCTACC 58.688 50.000 17.00 0.46 45.31 3.18
9 10 3.637998 ATTGCATATTGCTGCTGCTAC 57.362 42.857 17.00 0.00 45.31 3.58
10 11 3.189910 GCTATTGCATATTGCTGCTGCTA 59.810 43.478 17.00 9.75 45.31 3.49
11 12 2.030185 GCTATTGCATATTGCTGCTGCT 60.030 45.455 17.00 0.00 45.31 4.24
12 13 2.030185 AGCTATTGCATATTGCTGCTGC 60.030 45.455 8.89 8.89 45.31 5.25
13 14 3.917329 AGCTATTGCATATTGCTGCTG 57.083 42.857 13.63 0.00 45.31 4.41
14 15 3.439476 GCTAGCTATTGCATATTGCTGCT 59.561 43.478 19.60 11.57 45.31 4.24
16 17 4.672024 GCTGCTAGCTATTGCATATTGCTG 60.672 45.833 17.23 13.64 40.43 4.41
17 18 3.439476 GCTGCTAGCTATTGCATATTGCT 59.561 43.478 17.23 16.75 40.43 3.91
18 19 3.189910 TGCTGCTAGCTATTGCATATTGC 59.810 43.478 17.23 8.53 42.97 3.56
20 21 4.649692 ACTGCTGCTAGCTATTGCATATT 58.350 39.130 17.23 6.11 42.97 1.28
22 23 3.758755 ACTGCTGCTAGCTATTGCATA 57.241 42.857 17.23 1.27 42.97 3.14
24 25 2.168313 TGTACTGCTGCTAGCTATTGCA 59.832 45.455 17.23 18.04 42.97 4.08
25 26 2.826428 TGTACTGCTGCTAGCTATTGC 58.174 47.619 17.23 14.63 42.97 3.56
26 27 4.260538 GCTTTGTACTGCTGCTAGCTATTG 60.261 45.833 17.23 6.55 42.97 1.90
27 28 3.873952 GCTTTGTACTGCTGCTAGCTATT 59.126 43.478 17.23 0.00 42.97 1.73
28 29 3.118629 TGCTTTGTACTGCTGCTAGCTAT 60.119 43.478 17.23 0.00 42.97 2.97
30 31 1.002430 TGCTTTGTACTGCTGCTAGCT 59.998 47.619 17.23 0.00 42.97 3.32
31 32 1.396301 CTGCTTTGTACTGCTGCTAGC 59.604 52.381 8.10 8.10 42.82 3.42
32 33 1.396301 GCTGCTTTGTACTGCTGCTAG 59.604 52.381 20.80 0.00 45.99 3.42
34 35 2.251600 GCTGCTTTGTACTGCTGCT 58.748 52.632 20.80 0.00 45.99 4.24
35 36 4.855596 GCTGCTTTGTACTGCTGC 57.144 55.556 16.53 16.53 44.21 5.25
36 37 0.109873 GCTGCTGCTTTGTACTGCTG 60.110 55.000 8.53 1.95 36.03 4.41
37 38 0.535780 TGCTGCTGCTTTGTACTGCT 60.536 50.000 17.00 0.00 40.48 4.24
38 39 0.109873 CTGCTGCTGCTTTGTACTGC 60.110 55.000 17.00 0.00 40.48 4.40
41 42 1.129437 GCTACTGCTGCTGCTTTGTAC 59.871 52.381 17.00 8.25 40.48 2.90
42 43 1.270785 TGCTACTGCTGCTGCTTTGTA 60.271 47.619 17.00 14.39 40.48 2.41
43 44 0.535780 TGCTACTGCTGCTGCTTTGT 60.536 50.000 17.00 14.06 40.48 2.83
44 45 0.168348 CTGCTACTGCTGCTGCTTTG 59.832 55.000 17.00 9.26 40.48 2.77
45 46 2.552802 CTGCTACTGCTGCTGCTTT 58.447 52.632 17.00 5.99 40.48 3.51
46 47 4.298009 CTGCTACTGCTGCTGCTT 57.702 55.556 17.00 6.34 40.48 3.91
52 53 2.124819 CCCCTGCTGCTACTGCTG 60.125 66.667 0.00 0.00 40.48 4.41
53 54 1.908340 CTTCCCCTGCTGCTACTGCT 61.908 60.000 0.00 0.00 40.48 4.24
54 55 1.451028 CTTCCCCTGCTGCTACTGC 60.451 63.158 0.00 0.00 40.20 4.40
55 56 1.222936 CCTTCCCCTGCTGCTACTG 59.777 63.158 0.00 0.00 0.00 2.74
56 57 0.980231 CTCCTTCCCCTGCTGCTACT 60.980 60.000 0.00 0.00 0.00 2.57
59 60 3.726144 GCTCCTTCCCCTGCTGCT 61.726 66.667 0.00 0.00 0.00 4.24
63 64 4.722700 TTGCGCTCCTTCCCCTGC 62.723 66.667 9.73 0.00 0.00 4.85
64 65 2.437359 CTTGCGCTCCTTCCCCTG 60.437 66.667 9.73 0.00 0.00 4.45
65 66 3.721706 CCTTGCGCTCCTTCCCCT 61.722 66.667 9.73 0.00 0.00 4.79
66 67 3.689002 CTCCTTGCGCTCCTTCCCC 62.689 68.421 9.73 0.00 0.00 4.81
68 69 2.821810 GCTCCTTGCGCTCCTTCC 60.822 66.667 9.73 0.00 0.00 3.46
69 70 2.046892 TGCTCCTTGCGCTCCTTC 60.047 61.111 9.73 0.00 46.63 3.46
70 71 2.046507 CTGCTCCTTGCGCTCCTT 60.047 61.111 9.73 0.00 46.63 3.36
73 74 3.497932 CTGCTGCTCCTTGCGCTC 61.498 66.667 9.73 0.00 46.63 5.03
77 78 2.987547 TTGGCTGCTGCTCCTTGC 60.988 61.111 15.64 0.00 43.25 4.01
78 79 2.991076 GCTTGGCTGCTGCTCCTTG 61.991 63.158 15.64 3.42 39.59 3.61
80 81 3.921936 CTGCTTGGCTGCTGCTCCT 62.922 63.158 15.64 0.00 39.59 3.69
81 82 3.441290 CTGCTTGGCTGCTGCTCC 61.441 66.667 15.64 2.78 39.59 4.70
88 89 2.671963 TGCTCTGCTGCTTGGCTG 60.672 61.111 0.00 0.00 0.00 4.85
89 90 2.360100 CTGCTCTGCTGCTTGGCT 60.360 61.111 0.00 0.00 0.00 4.75
96 97 3.800863 CCTTGCGCTGCTCTGCTG 61.801 66.667 9.73 0.00 0.00 4.41
97 98 3.954465 CTCCTTGCGCTGCTCTGCT 62.954 63.158 9.73 0.00 0.00 4.24
98 99 3.497932 CTCCTTGCGCTGCTCTGC 61.498 66.667 9.73 0.00 0.00 4.26
99 100 2.818714 CCTCCTTGCGCTGCTCTG 60.819 66.667 9.73 0.00 0.00 3.35
100 101 2.999648 TCCTCCTTGCGCTGCTCT 61.000 61.111 9.73 0.00 0.00 4.09
101 102 2.511145 CTCCTCCTTGCGCTGCTC 60.511 66.667 9.73 0.00 0.00 4.26
102 103 4.774503 GCTCCTCCTTGCGCTGCT 62.775 66.667 9.73 0.00 0.00 4.24
104 105 2.818714 CTGCTCCTCCTTGCGCTG 60.819 66.667 9.73 0.76 0.00 5.18
105 106 4.774503 GCTGCTCCTCCTTGCGCT 62.775 66.667 9.73 0.00 0.00 5.92
106 107 2.859273 TTAGCTGCTCCTCCTTGCGC 62.859 60.000 4.91 0.00 0.00 6.09
107 108 0.809241 CTTAGCTGCTCCTCCTTGCG 60.809 60.000 4.91 0.00 0.00 4.85
108 109 0.251634 ACTTAGCTGCTCCTCCTTGC 59.748 55.000 4.91 0.00 0.00 4.01
109 110 2.482839 GCTACTTAGCTGCTCCTCCTTG 60.483 54.545 4.91 0.00 45.62 3.61
110 111 1.760029 GCTACTTAGCTGCTCCTCCTT 59.240 52.381 4.91 0.00 45.62 3.36
111 112 1.408969 GCTACTTAGCTGCTCCTCCT 58.591 55.000 4.91 0.00 45.62 3.69
112 113 0.031449 CGCTACTTAGCTGCTCCTCC 59.969 60.000 4.91 0.00 46.85 4.30
113 114 0.031449 CCGCTACTTAGCTGCTCCTC 59.969 60.000 4.91 0.00 46.85 3.71
114 115 2.119886 CCGCTACTTAGCTGCTCCT 58.880 57.895 4.91 0.00 46.85 3.69
115 116 4.740235 CCGCTACTTAGCTGCTCC 57.260 61.111 4.91 0.00 46.85 4.70
119 120 1.150567 CTGCTGCCGCTACTTAGCTG 61.151 60.000 6.68 1.25 46.85 4.24
120 121 1.142748 CTGCTGCCGCTACTTAGCT 59.857 57.895 6.68 0.00 46.85 3.32
121 122 1.884926 CCTGCTGCCGCTACTTAGC 60.885 63.158 0.70 0.00 45.62 3.09
122 123 0.249238 CTCCTGCTGCCGCTACTTAG 60.249 60.000 0.70 0.00 36.97 2.18
123 124 1.676678 CCTCCTGCTGCCGCTACTTA 61.677 60.000 0.70 0.00 36.97 2.24
124 125 2.581354 CTCCTGCTGCCGCTACTT 59.419 61.111 0.70 0.00 36.97 2.24
125 126 3.465403 CCTCCTGCTGCCGCTACT 61.465 66.667 0.70 0.00 36.97 2.57
126 127 2.914777 CTTCCTCCTGCTGCCGCTAC 62.915 65.000 0.70 0.00 36.97 3.58
127 128 2.683572 TTCCTCCTGCTGCCGCTA 60.684 61.111 0.70 0.00 36.97 4.26
128 129 4.093291 CTTCCTCCTGCTGCCGCT 62.093 66.667 0.70 0.00 36.97 5.52
129 130 2.914777 CTACTTCCTCCTGCTGCCGC 62.915 65.000 0.00 0.00 0.00 6.53
130 131 1.142748 CTACTTCCTCCTGCTGCCG 59.857 63.158 0.00 0.00 0.00 5.69
131 132 1.153269 GCTACTTCCTCCTGCTGCC 60.153 63.158 0.00 0.00 0.00 4.85
132 133 0.461693 CTGCTACTTCCTCCTGCTGC 60.462 60.000 0.00 0.00 0.00 5.25
133 134 0.901124 ACTGCTACTTCCTCCTGCTG 59.099 55.000 0.00 0.00 0.00 4.41
134 135 0.901124 CACTGCTACTTCCTCCTGCT 59.099 55.000 0.00 0.00 0.00 4.24
135 136 0.107945 CCACTGCTACTTCCTCCTGC 60.108 60.000 0.00 0.00 0.00 4.85
136 137 0.107945 GCCACTGCTACTTCCTCCTG 60.108 60.000 0.00 0.00 33.53 3.86
137 138 0.545309 TGCCACTGCTACTTCCTCCT 60.545 55.000 0.00 0.00 38.71 3.69
138 139 0.324943 TTGCCACTGCTACTTCCTCC 59.675 55.000 0.00 0.00 38.71 4.30
139 140 1.731720 CTTGCCACTGCTACTTCCTC 58.268 55.000 0.00 0.00 38.71 3.71
140 141 0.322008 GCTTGCCACTGCTACTTCCT 60.322 55.000 0.00 0.00 38.71 3.36
141 142 0.606401 TGCTTGCCACTGCTACTTCC 60.606 55.000 0.00 0.00 38.71 3.46
142 143 1.198637 CTTGCTTGCCACTGCTACTTC 59.801 52.381 0.00 0.00 38.71 3.01
143 144 1.242076 CTTGCTTGCCACTGCTACTT 58.758 50.000 0.00 0.00 38.71 2.24
144 145 1.239968 GCTTGCTTGCCACTGCTACT 61.240 55.000 0.00 0.00 38.71 2.57
145 146 1.211190 GCTTGCTTGCCACTGCTAC 59.789 57.895 0.00 0.00 38.71 3.58
146 147 0.609957 ATGCTTGCTTGCCACTGCTA 60.610 50.000 0.00 0.00 38.71 3.49
147 148 1.469335 AATGCTTGCTTGCCACTGCT 61.469 50.000 0.00 0.00 38.71 4.24
148 149 0.244450 TAATGCTTGCTTGCCACTGC 59.756 50.000 0.00 0.00 38.26 4.40
149 150 1.734707 GCTAATGCTTGCTTGCCACTG 60.735 52.381 0.00 0.00 36.03 3.66
150 151 0.529378 GCTAATGCTTGCTTGCCACT 59.471 50.000 0.00 0.00 36.03 4.00
151 152 0.244450 TGCTAATGCTTGCTTGCCAC 59.756 50.000 0.00 0.00 40.48 5.01
152 153 0.528924 CTGCTAATGCTTGCTTGCCA 59.471 50.000 0.00 0.00 40.48 4.92
153 154 0.529378 ACTGCTAATGCTTGCTTGCC 59.471 50.000 0.00 0.00 40.48 4.52
154 155 2.793933 GCTACTGCTAATGCTTGCTTGC 60.794 50.000 0.00 0.00 40.48 4.01
155 156 2.421073 TGCTACTGCTAATGCTTGCTTG 59.579 45.455 0.00 0.00 40.48 4.01
156 157 2.681848 CTGCTACTGCTAATGCTTGCTT 59.318 45.455 0.00 0.00 40.48 3.91
157 158 2.286872 CTGCTACTGCTAATGCTTGCT 58.713 47.619 0.00 0.00 40.48 3.91
158 159 2.012673 ACTGCTACTGCTAATGCTTGC 58.987 47.619 0.00 0.00 40.48 4.01
159 160 3.243877 CGTACTGCTACTGCTAATGCTTG 59.756 47.826 0.00 0.00 40.48 4.01
160 161 3.448686 CGTACTGCTACTGCTAATGCTT 58.551 45.455 0.00 0.00 40.48 3.91
161 162 2.799917 GCGTACTGCTACTGCTAATGCT 60.800 50.000 2.99 0.00 41.73 3.79
162 163 1.523095 GCGTACTGCTACTGCTAATGC 59.477 52.381 2.99 0.00 41.73 3.56
163 164 1.781429 CGCGTACTGCTACTGCTAATG 59.219 52.381 0.00 0.00 43.27 1.90
164 165 1.269102 CCGCGTACTGCTACTGCTAAT 60.269 52.381 4.92 0.00 43.27 1.73
165 166 0.099968 CCGCGTACTGCTACTGCTAA 59.900 55.000 4.92 0.00 43.27 3.09
166 167 1.028330 ACCGCGTACTGCTACTGCTA 61.028 55.000 4.92 0.00 43.27 3.49
167 168 1.028330 TACCGCGTACTGCTACTGCT 61.028 55.000 4.92 0.00 43.27 4.24
168 169 0.591741 CTACCGCGTACTGCTACTGC 60.592 60.000 4.92 0.00 43.27 4.40
169 170 0.029035 CCTACCGCGTACTGCTACTG 59.971 60.000 4.92 0.00 43.27 2.74
170 171 1.722636 GCCTACCGCGTACTGCTACT 61.723 60.000 4.92 0.00 43.27 2.57
171 172 1.298938 GCCTACCGCGTACTGCTAC 60.299 63.158 4.92 0.00 43.27 3.58
172 173 1.721664 CTGCCTACCGCGTACTGCTA 61.722 60.000 4.92 0.00 43.27 3.49
173 174 3.064987 CTGCCTACCGCGTACTGCT 62.065 63.158 4.92 0.00 43.27 4.24
174 175 2.582498 CTGCCTACCGCGTACTGC 60.582 66.667 4.92 2.90 42.08 4.40
175 176 2.582498 GCTGCCTACCGCGTACTG 60.582 66.667 4.92 0.00 42.08 2.74
176 177 3.064987 CTGCTGCCTACCGCGTACT 62.065 63.158 4.92 0.00 42.08 2.73
177 178 2.582498 CTGCTGCCTACCGCGTAC 60.582 66.667 4.92 0.00 42.08 3.67
178 179 4.508128 GCTGCTGCCTACCGCGTA 62.508 66.667 4.92 0.00 42.08 4.42
195 196 4.093952 CTGTTGCTCTTGCCGCCG 62.094 66.667 0.00 0.00 38.71 6.46
196 197 4.410743 GCTGTTGCTCTTGCCGCC 62.411 66.667 0.00 0.00 38.71 6.13
197 198 3.606065 CTGCTGTTGCTCTTGCCGC 62.606 63.158 0.00 0.00 40.48 6.53
198 199 2.559840 CTGCTGTTGCTCTTGCCG 59.440 61.111 0.00 0.00 40.48 5.69
199 200 0.606401 TACCTGCTGTTGCTCTTGCC 60.606 55.000 0.00 0.00 40.48 4.52
200 201 0.801251 CTACCTGCTGTTGCTCTTGC 59.199 55.000 0.00 0.00 40.48 4.01
201 202 0.801251 GCTACCTGCTGTTGCTCTTG 59.199 55.000 6.24 0.00 41.68 3.02
202 203 0.397941 TGCTACCTGCTGTTGCTCTT 59.602 50.000 12.56 0.00 44.65 2.85
203 204 0.397941 TTGCTACCTGCTGTTGCTCT 59.602 50.000 12.56 0.00 44.65 4.09
204 205 0.801251 CTTGCTACCTGCTGTTGCTC 59.199 55.000 12.56 0.00 44.65 4.26
205 206 1.239968 GCTTGCTACCTGCTGTTGCT 61.240 55.000 12.56 0.00 44.65 3.91
206 207 1.211190 GCTTGCTACCTGCTGTTGC 59.789 57.895 6.47 6.47 44.61 4.17
207 208 0.953727 TTGCTTGCTACCTGCTGTTG 59.046 50.000 0.00 0.00 43.37 3.33
208 209 0.954452 GTTGCTTGCTACCTGCTGTT 59.046 50.000 0.00 0.00 43.37 3.16
209 210 1.230635 CGTTGCTTGCTACCTGCTGT 61.231 55.000 2.05 0.00 43.37 4.40
210 211 1.499056 CGTTGCTTGCTACCTGCTG 59.501 57.895 2.05 0.00 43.37 4.41
211 212 1.672356 CCGTTGCTTGCTACCTGCT 60.672 57.895 2.05 0.00 43.37 4.24
212 213 2.870372 CCGTTGCTTGCTACCTGC 59.130 61.111 2.05 0.00 43.25 4.85
213 214 1.308069 ATGCCGTTGCTTGCTACCTG 61.308 55.000 2.05 0.00 38.71 4.00
214 215 0.609131 AATGCCGTTGCTTGCTACCT 60.609 50.000 2.05 0.00 38.71 3.08
215 216 0.179163 GAATGCCGTTGCTTGCTACC 60.179 55.000 2.05 0.00 38.71 3.18
216 217 0.521242 CGAATGCCGTTGCTTGCTAC 60.521 55.000 0.00 0.00 38.71 3.58
217 218 0.672091 TCGAATGCCGTTGCTTGCTA 60.672 50.000 0.00 0.00 39.75 3.49
218 219 1.915614 CTCGAATGCCGTTGCTTGCT 61.916 55.000 0.00 0.00 39.75 3.91
219 220 1.512734 CTCGAATGCCGTTGCTTGC 60.513 57.895 0.00 0.00 39.75 4.01
220 221 1.512734 GCTCGAATGCCGTTGCTTG 60.513 57.895 0.00 0.00 39.75 4.01
221 222 1.514678 TTGCTCGAATGCCGTTGCTT 61.515 50.000 0.00 0.00 38.67 3.91
222 223 1.965930 TTGCTCGAATGCCGTTGCT 60.966 52.632 0.00 0.00 38.67 3.91
223 224 1.797537 GTTGCTCGAATGCCGTTGC 60.798 57.895 0.00 0.00 39.75 4.17
224 225 0.453282 CTGTTGCTCGAATGCCGTTG 60.453 55.000 0.00 0.00 39.75 4.10
225 226 0.884704 ACTGTTGCTCGAATGCCGTT 60.885 50.000 0.00 0.00 39.75 4.44
226 227 0.037697 TACTGTTGCTCGAATGCCGT 60.038 50.000 0.00 0.00 39.75 5.68
227 228 0.647410 CTACTGTTGCTCGAATGCCG 59.353 55.000 0.00 0.00 40.25 5.69
228 229 1.394917 CACTACTGTTGCTCGAATGCC 59.605 52.381 0.00 0.00 0.00 4.40
229 230 1.201965 GCACTACTGTTGCTCGAATGC 60.202 52.381 0.00 0.00 0.00 3.56
230 231 1.394917 GGCACTACTGTTGCTCGAATG 59.605 52.381 4.64 0.00 0.00 2.67
231 232 1.001974 TGGCACTACTGTTGCTCGAAT 59.998 47.619 4.64 0.00 0.00 3.34
232 233 0.391228 TGGCACTACTGTTGCTCGAA 59.609 50.000 4.64 0.00 0.00 3.71
233 234 0.319555 GTGGCACTACTGTTGCTCGA 60.320 55.000 11.13 0.00 0.00 4.04
234 235 0.599991 TGTGGCACTACTGTTGCTCG 60.600 55.000 19.83 0.00 0.00 5.03
235 236 1.151668 CTGTGGCACTACTGTTGCTC 58.848 55.000 19.83 0.52 0.00 4.26
236 237 0.886490 GCTGTGGCACTACTGTTGCT 60.886 55.000 19.83 0.00 38.54 3.91
237 238 1.165907 TGCTGTGGCACTACTGTTGC 61.166 55.000 19.83 11.29 44.28 4.17
238 239 0.870393 CTGCTGTGGCACTACTGTTG 59.130 55.000 19.83 1.77 44.28 3.33
239 240 0.886490 GCTGCTGTGGCACTACTGTT 60.886 55.000 19.83 0.00 44.28 3.16
240 241 1.302033 GCTGCTGTGGCACTACTGT 60.302 57.895 19.83 0.00 44.28 3.55
241 242 0.886043 TTGCTGCTGTGGCACTACTG 60.886 55.000 19.83 14.65 44.28 2.74
242 243 0.604780 CTTGCTGCTGTGGCACTACT 60.605 55.000 19.83 0.00 44.28 2.57
243 244 1.871772 CTTGCTGCTGTGGCACTAC 59.128 57.895 19.83 11.16 44.28 2.73
244 245 1.968017 GCTTGCTGCTGTGGCACTA 60.968 57.895 19.83 4.41 44.28 2.74
245 246 3.292936 GCTTGCTGCTGTGGCACT 61.293 61.111 19.83 0.00 44.28 4.40
246 247 2.927580 ATGCTTGCTGCTGTGGCAC 61.928 57.895 11.55 11.55 44.28 5.01
248 249 2.126071 CATGCTTGCTGCTGTGGC 60.126 61.111 0.00 0.69 43.37 5.01
249 250 2.126071 GCATGCTTGCTGCTGTGG 60.126 61.111 16.80 0.00 45.77 4.17
306 307 2.747460 TTGCTGCTGGCCACGATC 60.747 61.111 0.00 0.00 40.92 3.69
307 308 3.058160 GTTGCTGCTGGCCACGAT 61.058 61.111 0.00 0.00 40.92 3.73
308 309 4.560743 TGTTGCTGCTGGCCACGA 62.561 61.111 0.00 0.00 39.15 4.35
309 310 3.594775 TTGTTGCTGCTGGCCACG 61.595 61.111 0.00 0.00 39.15 4.94
310 311 2.028043 GTTGTTGCTGCTGGCCAC 59.972 61.111 0.00 0.00 40.92 5.01
311 312 1.808531 GATGTTGTTGCTGCTGGCCA 61.809 55.000 4.71 4.71 40.92 5.36
312 313 1.080298 GATGTTGTTGCTGCTGGCC 60.080 57.895 0.00 0.00 40.92 5.36
313 314 0.388134 CTGATGTTGTTGCTGCTGGC 60.388 55.000 0.00 0.00 42.22 4.85
314 315 0.388134 GCTGATGTTGTTGCTGCTGG 60.388 55.000 0.00 0.00 0.00 4.85
315 316 0.728129 CGCTGATGTTGTTGCTGCTG 60.728 55.000 0.00 0.00 0.00 4.41
316 317 1.168407 ACGCTGATGTTGTTGCTGCT 61.168 50.000 0.00 0.00 0.00 4.24
317 318 0.516877 TACGCTGATGTTGTTGCTGC 59.483 50.000 0.00 0.00 0.00 5.25
318 319 1.464687 GCTACGCTGATGTTGTTGCTG 60.465 52.381 0.00 0.00 32.79 4.41
319 320 0.798776 GCTACGCTGATGTTGTTGCT 59.201 50.000 0.00 0.00 32.79 3.91
320 321 0.516877 TGCTACGCTGATGTTGTTGC 59.483 50.000 0.00 0.00 35.42 4.17
321 322 1.135972 GGTGCTACGCTGATGTTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
322 323 1.156736 GGTGCTACGCTGATGTTGTT 58.843 50.000 0.00 0.00 0.00 2.83
323 324 0.321671 AGGTGCTACGCTGATGTTGT 59.678 50.000 0.00 0.00 0.00 3.32
324 325 2.196749 CTAGGTGCTACGCTGATGTTG 58.803 52.381 0.00 0.00 0.00 3.33
325 326 1.471676 GCTAGGTGCTACGCTGATGTT 60.472 52.381 0.00 0.00 38.95 2.71
326 327 0.103208 GCTAGGTGCTACGCTGATGT 59.897 55.000 0.00 0.00 38.95 3.06
327 328 0.936764 CGCTAGGTGCTACGCTGATG 60.937 60.000 0.00 0.00 40.11 3.07
328 329 1.360551 CGCTAGGTGCTACGCTGAT 59.639 57.895 0.00 0.00 40.11 2.90
329 330 2.771639 CCGCTAGGTGCTACGCTGA 61.772 63.158 0.00 0.00 40.11 4.26
330 331 2.278857 CCGCTAGGTGCTACGCTG 60.279 66.667 0.00 0.00 40.11 5.18
331 332 4.208686 GCCGCTAGGTGCTACGCT 62.209 66.667 0.00 0.00 40.50 5.07
332 333 4.508128 TGCCGCTAGGTGCTACGC 62.508 66.667 0.00 0.00 40.50 4.42
333 334 2.278857 CTGCCGCTAGGTGCTACG 60.279 66.667 0.00 0.00 40.50 3.51
334 335 0.528684 CTTCTGCCGCTAGGTGCTAC 60.529 60.000 0.00 0.00 40.50 3.58
335 336 0.970937 ACTTCTGCCGCTAGGTGCTA 60.971 55.000 0.00 0.00 40.50 3.49
336 337 0.970937 TACTTCTGCCGCTAGGTGCT 60.971 55.000 0.00 0.00 40.50 4.40
337 338 0.528684 CTACTTCTGCCGCTAGGTGC 60.529 60.000 0.00 0.00 40.50 5.01
338 339 1.066303 CTCTACTTCTGCCGCTAGGTG 59.934 57.143 0.00 0.00 40.50 4.00
339 340 1.394618 CTCTACTTCTGCCGCTAGGT 58.605 55.000 0.00 0.00 40.50 3.08
340 341 0.031449 GCTCTACTTCTGCCGCTAGG 59.969 60.000 0.00 0.00 41.62 3.02
341 342 0.741326 TGCTCTACTTCTGCCGCTAG 59.259 55.000 0.00 0.00 0.00 3.42
342 343 0.741326 CTGCTCTACTTCTGCCGCTA 59.259 55.000 0.00 0.00 0.00 4.26
343 344 1.515020 CTGCTCTACTTCTGCCGCT 59.485 57.895 0.00 0.00 0.00 5.52
344 345 2.170434 GCTGCTCTACTTCTGCCGC 61.170 63.158 0.00 0.00 0.00 6.53
345 346 0.805322 CTGCTGCTCTACTTCTGCCG 60.805 60.000 0.00 0.00 0.00 5.69
346 347 1.088910 GCTGCTGCTCTACTTCTGCC 61.089 60.000 8.53 0.00 36.03 4.85
347 348 0.390866 TGCTGCTGCTCTACTTCTGC 60.391 55.000 17.00 0.00 40.48 4.26
348 349 2.001159 CTTGCTGCTGCTCTACTTCTG 58.999 52.381 17.00 0.00 40.48 3.02
349 350 1.675415 GCTTGCTGCTGCTCTACTTCT 60.675 52.381 17.00 0.00 40.48 2.85
350 351 0.726256 GCTTGCTGCTGCTCTACTTC 59.274 55.000 17.00 0.00 40.48 3.01
351 352 0.035881 TGCTTGCTGCTGCTCTACTT 59.964 50.000 17.00 0.00 43.37 2.24
352 353 0.391395 CTGCTTGCTGCTGCTCTACT 60.391 55.000 17.00 0.00 43.37 2.57
353 354 2.088180 CTGCTTGCTGCTGCTCTAC 58.912 57.895 17.00 4.57 43.37 2.59
354 355 4.611961 CTGCTTGCTGCTGCTCTA 57.388 55.556 17.00 1.71 43.37 2.43
359 360 1.446099 CCATTGCTGCTTGCTGCTG 60.446 57.895 21.38 13.81 43.37 4.41
360 361 2.970639 CCATTGCTGCTTGCTGCT 59.029 55.556 21.38 3.73 43.37 4.24
361 362 2.813908 GCCATTGCTGCTTGCTGC 60.814 61.111 15.80 15.80 43.37 5.25
362 363 1.736645 GTGCCATTGCTGCTTGCTG 60.737 57.895 0.00 0.00 43.37 4.41
363 364 2.654877 GTGCCATTGCTGCTTGCT 59.345 55.556 0.00 0.00 43.37 3.91
364 365 2.807895 CGTGCCATTGCTGCTTGC 60.808 61.111 0.00 0.00 43.25 4.01
365 366 1.154093 CTCGTGCCATTGCTGCTTG 60.154 57.895 0.00 0.00 38.71 4.01
366 367 2.986306 GCTCGTGCCATTGCTGCTT 61.986 57.895 0.00 0.00 38.71 3.91
367 368 3.437795 GCTCGTGCCATTGCTGCT 61.438 61.111 0.00 0.00 38.71 4.24
368 369 3.678717 CTGCTCGTGCCATTGCTGC 62.679 63.158 7.05 0.00 38.71 5.25
369 370 2.483745 CTGCTCGTGCCATTGCTG 59.516 61.111 7.05 0.00 38.71 4.41
370 371 3.437795 GCTGCTCGTGCCATTGCT 61.438 61.111 7.05 0.00 38.71 3.91
371 372 3.678717 CTGCTGCTCGTGCCATTGC 62.679 63.158 7.05 6.91 38.71 3.56
372 373 2.483745 CTGCTGCTCGTGCCATTG 59.516 61.111 7.05 0.00 38.71 2.82
373 374 3.437795 GCTGCTGCTCGTGCCATT 61.438 61.111 8.53 0.00 38.71 3.16
374 375 4.710167 TGCTGCTGCTCGTGCCAT 62.710 61.111 17.00 0.00 40.48 4.40
375 376 4.933563 TTGCTGCTGCTCGTGCCA 62.934 61.111 17.00 0.00 40.48 4.92
376 377 4.099170 CTTGCTGCTGCTCGTGCC 62.099 66.667 17.00 0.00 40.48 5.01
377 378 4.755614 GCTTGCTGCTGCTCGTGC 62.756 66.667 17.00 1.71 40.48 5.34
378 379 3.310253 CTGCTTGCTGCTGCTCGTG 62.310 63.158 17.00 5.43 43.37 4.35
379 380 2.440385 TACTGCTTGCTGCTGCTCGT 62.440 55.000 17.00 14.74 43.25 4.18
380 381 1.694018 CTACTGCTTGCTGCTGCTCG 61.694 60.000 17.00 8.50 43.25 5.03
381 382 1.979831 GCTACTGCTTGCTGCTGCTC 61.980 60.000 17.00 6.62 43.25 4.26
382 383 2.039405 GCTACTGCTTGCTGCTGCT 61.039 57.895 17.00 0.00 43.25 4.24
383 384 2.484203 GCTACTGCTTGCTGCTGC 59.516 61.111 8.89 8.89 43.25 5.25
384 385 2.031516 ACGCTACTGCTTGCTGCTG 61.032 57.895 0.00 7.38 44.70 4.41
385 386 2.031516 CACGCTACTGCTTGCTGCT 61.032 57.895 0.00 0.00 43.37 4.24
386 387 2.477845 CACGCTACTGCTTGCTGC 59.522 61.111 0.00 0.00 43.25 5.25
390 391 4.489795 CGCGCACGCTACTGCTTG 62.490 66.667 13.70 0.00 40.80 4.01
397 398 3.918181 TTAACTGCCGCGCACGCTA 62.918 57.895 16.45 3.82 39.32 4.26
399 400 3.661025 AATTAACTGCCGCGCACGC 62.661 57.895 8.75 9.14 38.22 5.34
400 401 1.863012 CAATTAACTGCCGCGCACG 60.863 57.895 8.75 0.00 33.79 5.34
401 402 2.152078 GCAATTAACTGCCGCGCAC 61.152 57.895 8.75 0.00 36.25 5.34
402 403 2.178025 GCAATTAACTGCCGCGCA 59.822 55.556 8.75 1.04 36.25 6.09
403 404 2.152078 GTGCAATTAACTGCCGCGC 61.152 57.895 6.42 0.00 41.90 6.86
404 405 0.179166 ATGTGCAATTAACTGCCGCG 60.179 50.000 6.42 0.00 41.90 6.46
405 406 2.842208 TATGTGCAATTAACTGCCGC 57.158 45.000 6.42 0.15 41.90 6.53
406 407 4.355543 ACTTATGTGCAATTAACTGCCG 57.644 40.909 6.42 0.00 41.90 5.69
407 408 5.124776 TGGTACTTATGTGCAATTAACTGCC 59.875 40.000 6.42 0.00 41.90 4.85
408 409 6.027749 GTGGTACTTATGTGCAATTAACTGC 58.972 40.000 1.03 1.03 42.95 4.40
409 410 7.139896 TGTGGTACTTATGTGCAATTAACTG 57.860 36.000 0.00 0.00 0.00 3.16
518 520 9.052759 CAATACGTATAAATCAGCCTTTTACCT 57.947 33.333 8.83 0.00 0.00 3.08
607 609 1.649390 CTCGTCCTAGTCAGCGCACT 61.649 60.000 11.47 8.08 0.00 4.40
816 855 0.997363 TCGGTGGAGGAGGAAGACTA 59.003 55.000 0.00 0.00 0.00 2.59
850 889 6.942976 TGAAACCCTAAACTCACTATAGTGG 58.057 40.000 28.33 21.43 45.65 4.00
853 892 9.892130 AAATCTGAAACCCTAAACTCACTATAG 57.108 33.333 0.00 0.00 0.00 1.31
946 991 2.038863 TCAAGGCTGAAAGGGACCTA 57.961 50.000 0.00 0.00 0.00 3.08
981 1026 0.700564 TCAAATCCAGCTCAAGCCCT 59.299 50.000 0.00 0.00 43.38 5.19
1040 1085 4.761739 TGTCTATTCCTTCAAAGGCAACAG 59.238 41.667 3.79 0.00 46.06 3.16
1058 1103 3.788227 AAAACATCCTGCCTGTGTCTA 57.212 42.857 0.00 0.00 0.00 2.59
1073 1118 2.545532 GGCTGTGCACATGCTAAAAACA 60.546 45.455 28.26 0.00 42.66 2.83
1135 1189 2.357009 GCAGAGTTCAATATGGCACTGG 59.643 50.000 0.00 0.00 0.00 4.00
1322 1433 2.072298 CAAGCAGAGTACTCCAGCAAC 58.928 52.381 28.99 11.65 34.73 4.17
1519 1764 6.974932 ACAGAGTTCATACAGCAAGTAATG 57.025 37.500 0.00 0.00 36.05 1.90
1562 1835 2.795329 CCACAATTGCTACCTTCCTGT 58.205 47.619 5.05 0.00 0.00 4.00
1627 1900 2.480759 GCCCATAGCTTCAACAATGCAG 60.481 50.000 0.00 0.00 38.99 4.41
1671 1947 5.762179 TCAAGATTGTCATTCACCCTAGT 57.238 39.130 0.00 0.00 0.00 2.57
2282 2609 4.671831 TCATTCCCAAAAGGTCAGCAATA 58.328 39.130 0.00 0.00 36.75 1.90
2313 2640 5.543507 AGTTCCTAGATGCTAGGTCATTG 57.456 43.478 17.51 0.00 36.16 2.82
2346 2690 3.039011 ACAGTACACAACCTCAGTTCCT 58.961 45.455 0.00 0.00 32.45 3.36
2353 2697 4.315803 ACAAGCATACAGTACACAACCTC 58.684 43.478 0.00 0.00 0.00 3.85
2505 2856 3.632145 AGTTTCTGGCGTTCAACTCATTT 59.368 39.130 0.00 0.00 0.00 2.32
2518 2917 4.635765 TCATAGCACACATTAGTTTCTGGC 59.364 41.667 0.00 0.00 0.00 4.85
2705 3144 1.068127 CAAGTTGCAGGCAAGAGCTTT 59.932 47.619 6.99 0.00 41.70 3.51
2708 3147 1.288127 CCAAGTTGCAGGCAAGAGC 59.712 57.895 6.99 0.00 36.52 4.09
2715 3154 1.686052 TGGTTTAAGCCAAGTTGCAGG 59.314 47.619 8.82 0.00 35.25 4.85
2717 3156 2.103373 TGTGGTTTAAGCCAAGTTGCA 58.897 42.857 13.15 3.60 40.68 4.08
2718 3157 2.159170 TGTGTGGTTTAAGCCAAGTTGC 60.159 45.455 13.15 0.81 40.68 4.17
2719 3158 3.791973 TGTGTGGTTTAAGCCAAGTTG 57.208 42.857 13.15 0.00 40.68 3.16
2721 3160 5.183140 GTCATATGTGTGGTTTAAGCCAAGT 59.817 40.000 13.15 2.41 40.68 3.16
2723 3162 5.321102 AGTCATATGTGTGGTTTAAGCCAA 58.679 37.500 13.15 0.00 40.68 4.52
2724 3163 4.917385 AGTCATATGTGTGGTTTAAGCCA 58.083 39.130 6.99 6.99 35.93 4.75
2725 3164 4.941263 TGAGTCATATGTGTGGTTTAAGCC 59.059 41.667 0.54 0.54 0.00 4.35
2726 3165 6.540189 AGATGAGTCATATGTGTGGTTTAAGC 59.460 38.462 5.38 0.00 0.00 3.09
2728 3167 7.619965 TGAGATGAGTCATATGTGTGGTTTAA 58.380 34.615 4.67 0.00 0.00 1.52
2729 3168 7.181569 TGAGATGAGTCATATGTGTGGTTTA 57.818 36.000 4.67 0.00 0.00 2.01
2730 3169 6.053632 TGAGATGAGTCATATGTGTGGTTT 57.946 37.500 4.67 0.00 0.00 3.27
2731 3170 5.682234 TGAGATGAGTCATATGTGTGGTT 57.318 39.130 4.67 0.00 0.00 3.67
2732 3171 5.883685 ATGAGATGAGTCATATGTGTGGT 57.116 39.130 4.67 0.00 35.30 4.16
2733 3172 5.049612 GCAATGAGATGAGTCATATGTGTGG 60.050 44.000 4.67 0.00 36.07 4.17
2734 3173 5.526111 TGCAATGAGATGAGTCATATGTGTG 59.474 40.000 4.67 3.42 36.07 3.82
2735 3174 5.677567 TGCAATGAGATGAGTCATATGTGT 58.322 37.500 4.67 0.00 36.07 3.72
2736 3175 6.426937 TGATGCAATGAGATGAGTCATATGTG 59.573 38.462 4.67 2.06 36.07 3.21
2737 3176 6.531021 TGATGCAATGAGATGAGTCATATGT 58.469 36.000 4.67 0.00 36.07 2.29
2738 3177 6.874134 TCTGATGCAATGAGATGAGTCATATG 59.126 38.462 4.67 0.00 36.07 1.78
2739 3178 7.005709 TCTGATGCAATGAGATGAGTCATAT 57.994 36.000 5.38 1.88 36.07 1.78
2740 3179 6.415206 TCTGATGCAATGAGATGAGTCATA 57.585 37.500 5.38 0.00 36.07 2.15
2741 3180 5.291905 TCTGATGCAATGAGATGAGTCAT 57.708 39.130 4.98 4.98 38.91 3.06
2742 3181 4.748277 TCTGATGCAATGAGATGAGTCA 57.252 40.909 0.00 0.00 29.28 3.41
2743 3182 5.358090 TCTTCTGATGCAATGAGATGAGTC 58.642 41.667 0.00 0.00 36.16 3.36
2744 3183 5.354842 TCTTCTGATGCAATGAGATGAGT 57.645 39.130 0.00 0.00 36.16 3.41
2745 3184 7.658167 AGTTATCTTCTGATGCAATGAGATGAG 59.342 37.037 0.00 0.00 42.20 2.90
2746 3185 7.506971 AGTTATCTTCTGATGCAATGAGATGA 58.493 34.615 0.00 0.76 42.85 2.92
2747 3186 7.731882 AGTTATCTTCTGATGCAATGAGATG 57.268 36.000 0.00 0.00 36.16 2.90
2843 3310 6.404623 GCCAATCTAAATGCAATGTACTGTCA 60.405 38.462 0.00 0.00 0.00 3.58
3107 3575 2.362397 GGGATCTGCGTGATGAAGTCTA 59.638 50.000 0.00 0.00 35.14 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.