Multiple sequence alignment - TraesCS1D01G073900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G073900 chr1D 100.000 3604 0 0 1 3604 55408654 55412257 0.000000e+00 6656
1 TraesCS1D01G073900 chr1A 89.823 1867 119 23 1127 2967 54001078 54002899 0.000000e+00 2329
2 TraesCS1D01G073900 chr1A 91.945 658 31 4 2965 3603 294520162 294519508 0.000000e+00 902
3 TraesCS1D01G073900 chr1A 91.577 653 36 1 2971 3604 156377287 156376635 0.000000e+00 883
4 TraesCS1D01G073900 chr1A 88.618 492 26 17 640 1125 54000573 54001040 4.040000e-159 571
5 TraesCS1D01G073900 chr1A 82.909 275 31 14 221 483 54000281 54000551 2.160000e-57 233
6 TraesCS1D01G073900 chr1A 80.899 267 42 6 1582 1845 504573516 504573776 6.100000e-48 202
7 TraesCS1D01G073900 chr1B 88.438 1626 131 24 1360 2954 90698036 90699635 0.000000e+00 1908
8 TraesCS1D01G073900 chr1B 90.251 1036 59 12 1945 2967 90878720 90879726 0.000000e+00 1315
9 TraesCS1D01G073900 chr1B 86.252 1062 84 26 79 1125 90696658 90697672 0.000000e+00 1096
10 TraesCS1D01G073900 chr1B 87.624 808 77 16 1119 1925 90877637 90878422 0.000000e+00 917
11 TraesCS1D01G073900 chr1B 93.388 363 14 8 220 575 90876793 90877152 2.460000e-146 529
12 TraesCS1D01G073900 chr1B 83.669 496 25 15 632 1125 90877144 90877585 2.000000e-112 416
13 TraesCS1D01G073900 chr1B 86.878 221 23 5 1119 1339 90697723 90697937 3.600000e-60 243
14 TraesCS1D01G073900 chr1B 95.973 149 6 0 82 230 90876235 90876383 3.600000e-60 243
15 TraesCS1D01G073900 chr3D 93.262 653 25 1 2971 3604 578210071 578209419 0.000000e+00 944
16 TraesCS1D01G073900 chr3D 90.812 653 41 1 2971 3604 601850876 601850224 0.000000e+00 856
17 TraesCS1D01G073900 chr3D 89.893 653 42 12 2971 3604 89609711 89609064 0.000000e+00 819
18 TraesCS1D01G073900 chr6D 93.109 653 26 1 2971 3604 436671786 436671134 0.000000e+00 939
19 TraesCS1D01G073900 chr6A 92.791 652 28 1 2971 3603 516249447 516250098 0.000000e+00 926
20 TraesCS1D01G073900 chrUn 92.138 636 31 1 2971 3587 352127842 352127207 0.000000e+00 880
21 TraesCS1D01G073900 chr2A 91.385 650 37 3 2973 3603 348041100 348041749 0.000000e+00 872
22 TraesCS1D01G073900 chr2A 90.199 653 44 2 2971 3604 261608843 261609494 0.000000e+00 833
23 TraesCS1D01G073900 chr7A 90.505 653 42 2 2971 3604 357332663 357333314 0.000000e+00 845
24 TraesCS1D01G073900 chr7A 82.657 271 43 1 1575 1845 619577219 619577485 1.670000e-58 237
25 TraesCS1D01G073900 chr5D 90.352 653 44 1 2971 3604 81299715 81299063 0.000000e+00 839
26 TraesCS1D01G073900 chr2D 89.127 653 32 7 2971 3604 635863335 635863967 0.000000e+00 776
27 TraesCS1D01G073900 chr5B 92.204 372 13 6 307 676 423347619 423347976 2.480000e-141 512
28 TraesCS1D01G073900 chr2B 85.000 300 44 1 2971 3270 67684663 67684365 1.630000e-78 303
29 TraesCS1D01G073900 chr4A 81.319 273 47 3 1576 1848 472196573 472196305 6.060000e-53 219
30 TraesCS1D01G073900 chr5A 81.022 274 48 1 1575 1848 13350477 13350208 7.840000e-52 215
31 TraesCS1D01G073900 chr5A 80.882 272 48 1 1577 1848 25820041 25819774 1.010000e-50 211
32 TraesCS1D01G073900 chr3A 80.072 276 48 4 1573 1847 656742220 656742489 7.890000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G073900 chr1D 55408654 55412257 3603 False 6656.000000 6656 100.000000 1 3604 1 chr1D.!!$F1 3603
1 TraesCS1D01G073900 chr1A 54000281 54002899 2618 False 1044.333333 2329 87.116667 221 2967 3 chr1A.!!$F2 2746
2 TraesCS1D01G073900 chr1A 294519508 294520162 654 True 902.000000 902 91.945000 2965 3603 1 chr1A.!!$R2 638
3 TraesCS1D01G073900 chr1A 156376635 156377287 652 True 883.000000 883 91.577000 2971 3604 1 chr1A.!!$R1 633
4 TraesCS1D01G073900 chr1B 90696658 90699635 2977 False 1082.333333 1908 87.189333 79 2954 3 chr1B.!!$F1 2875
5 TraesCS1D01G073900 chr1B 90876235 90879726 3491 False 684.000000 1315 90.181000 82 2967 5 chr1B.!!$F2 2885
6 TraesCS1D01G073900 chr3D 578209419 578210071 652 True 944.000000 944 93.262000 2971 3604 1 chr3D.!!$R2 633
7 TraesCS1D01G073900 chr3D 601850224 601850876 652 True 856.000000 856 90.812000 2971 3604 1 chr3D.!!$R3 633
8 TraesCS1D01G073900 chr3D 89609064 89609711 647 True 819.000000 819 89.893000 2971 3604 1 chr3D.!!$R1 633
9 TraesCS1D01G073900 chr6D 436671134 436671786 652 True 939.000000 939 93.109000 2971 3604 1 chr6D.!!$R1 633
10 TraesCS1D01G073900 chr6A 516249447 516250098 651 False 926.000000 926 92.791000 2971 3603 1 chr6A.!!$F1 632
11 TraesCS1D01G073900 chrUn 352127207 352127842 635 True 880.000000 880 92.138000 2971 3587 1 chrUn.!!$R1 616
12 TraesCS1D01G073900 chr2A 348041100 348041749 649 False 872.000000 872 91.385000 2973 3603 1 chr2A.!!$F2 630
13 TraesCS1D01G073900 chr2A 261608843 261609494 651 False 833.000000 833 90.199000 2971 3604 1 chr2A.!!$F1 633
14 TraesCS1D01G073900 chr7A 357332663 357333314 651 False 845.000000 845 90.505000 2971 3604 1 chr7A.!!$F1 633
15 TraesCS1D01G073900 chr5D 81299063 81299715 652 True 839.000000 839 90.352000 2971 3604 1 chr5D.!!$R1 633
16 TraesCS1D01G073900 chr2D 635863335 635863967 632 False 776.000000 776 89.127000 2971 3604 1 chr2D.!!$F1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 1023 0.109086 ACGAGTGATCAGGCTTCACG 60.109 55.0 12.38 5.86 46.39 4.35 F
1217 1776 0.464036 TTGACAACAGTCGCAGTCCT 59.536 50.0 0.00 0.00 35.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 2189 0.109597 GAAATTGCAGTGGGTCGCTG 60.110 55.000 4.30 4.3 43.89 5.18 R
2968 3904 1.300963 CCCATCTGGTCCTGGTGTG 59.699 63.158 8.11 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.488762 TTTATATAGGATGTATCTACCACCAGG 57.511 37.037 0.00 0.00 42.21 4.45
60 61 3.993658 AGGATGTATCTACCACCAGGA 57.006 47.619 0.00 0.00 38.69 3.86
61 62 4.280789 AGGATGTATCTACCACCAGGAA 57.719 45.455 0.00 0.00 38.69 3.36
62 63 3.967987 AGGATGTATCTACCACCAGGAAC 59.032 47.826 0.00 0.00 38.69 3.62
63 64 3.071167 GGATGTATCTACCACCAGGAACC 59.929 52.174 0.00 0.00 38.69 3.62
64 65 3.193395 TGTATCTACCACCAGGAACCA 57.807 47.619 0.00 0.00 38.69 3.67
65 66 3.522759 TGTATCTACCACCAGGAACCAA 58.477 45.455 0.00 0.00 38.69 3.67
66 67 3.911260 TGTATCTACCACCAGGAACCAAA 59.089 43.478 0.00 0.00 38.69 3.28
67 68 3.721087 ATCTACCACCAGGAACCAAAG 57.279 47.619 0.00 0.00 38.69 2.77
68 69 2.414612 TCTACCACCAGGAACCAAAGT 58.585 47.619 0.00 0.00 38.69 2.66
69 70 2.105821 TCTACCACCAGGAACCAAAGTG 59.894 50.000 0.00 0.00 38.69 3.16
70 71 0.629058 ACCACCAGGAACCAAAGTGT 59.371 50.000 0.00 0.00 38.69 3.55
71 72 1.847737 ACCACCAGGAACCAAAGTGTA 59.152 47.619 0.00 0.00 38.69 2.90
72 73 2.445525 ACCACCAGGAACCAAAGTGTAT 59.554 45.455 0.00 0.00 38.69 2.29
73 74 3.117284 ACCACCAGGAACCAAAGTGTATT 60.117 43.478 0.00 0.00 38.69 1.89
74 75 3.506067 CCACCAGGAACCAAAGTGTATTC 59.494 47.826 0.00 0.00 36.89 1.75
75 76 3.506067 CACCAGGAACCAAAGTGTATTCC 59.494 47.826 0.00 0.00 40.87 3.01
76 77 2.747446 CCAGGAACCAAAGTGTATTCCG 59.253 50.000 0.00 0.00 44.49 4.30
77 78 2.161609 CAGGAACCAAAGTGTATTCCGC 59.838 50.000 0.00 0.00 44.49 5.54
80 81 2.109425 ACCAAAGTGTATTCCGCCTC 57.891 50.000 0.00 0.00 0.00 4.70
180 188 3.368843 CGGCCATAGGTGATCTTATCCTG 60.369 52.174 2.24 0.00 33.34 3.86
181 189 3.584848 GGCCATAGGTGATCTTATCCTGT 59.415 47.826 0.00 0.00 33.34 4.00
205 213 1.188219 TCCTTCCTGAGCGCAGACTT 61.188 55.000 19.95 0.00 45.17 3.01
210 218 2.103373 TCCTGAGCGCAGACTTAGAAT 58.897 47.619 19.95 0.00 45.17 2.40
336 769 1.219124 CACATCAGTCTGGGGTCGG 59.781 63.158 0.00 0.00 0.00 4.79
337 770 1.229209 ACATCAGTCTGGGGTCGGT 60.229 57.895 0.00 0.00 0.00 4.69
338 771 1.258445 ACATCAGTCTGGGGTCGGTC 61.258 60.000 0.00 0.00 0.00 4.79
339 772 0.972983 CATCAGTCTGGGGTCGGTCT 60.973 60.000 0.00 0.00 0.00 3.85
358 793 8.013947 GTCGGTCTCCTTTCAGTTAAAAATTAC 58.986 37.037 0.00 0.00 0.00 1.89
359 800 7.173735 TCGGTCTCCTTTCAGTTAAAAATTACC 59.826 37.037 0.00 0.00 0.00 2.85
475 921 3.505680 TGGTGCGAGTAATTCAAATGCTT 59.494 39.130 0.00 0.00 0.00 3.91
489 935 1.606885 ATGCTTCCAACCATTGCCGG 61.607 55.000 0.00 0.00 0.00 6.13
545 991 2.038387 ACCATGATAGCAAACCGTCC 57.962 50.000 0.00 0.00 0.00 4.79
576 1022 1.996191 GAACGAGTGATCAGGCTTCAC 59.004 52.381 10.67 10.67 43.05 3.18
577 1023 0.109086 ACGAGTGATCAGGCTTCACG 60.109 55.000 12.38 5.86 46.39 4.35
582 1028 2.026822 AGTGATCAGGCTTCACGGAAAT 60.027 45.455 12.38 0.00 46.39 2.17
599 1045 4.467735 GGAAATGAACGTGAGAAAGAAGC 58.532 43.478 0.00 0.00 0.00 3.86
603 1049 6.861065 AATGAACGTGAGAAAGAAGCTAAA 57.139 33.333 0.00 0.00 0.00 1.85
605 1051 6.861065 TGAACGTGAGAAAGAAGCTAAAAT 57.139 33.333 0.00 0.00 0.00 1.82
607 1053 8.018677 TGAACGTGAGAAAGAAGCTAAAATAG 57.981 34.615 0.00 0.00 0.00 1.73
611 1057 8.660373 ACGTGAGAAAGAAGCTAAAATAGAATG 58.340 33.333 0.00 0.00 0.00 2.67
612 1058 8.660373 CGTGAGAAAGAAGCTAAAATAGAATGT 58.340 33.333 0.00 0.00 0.00 2.71
613 1059 9.766277 GTGAGAAAGAAGCTAAAATAGAATGTG 57.234 33.333 0.00 0.00 0.00 3.21
614 1060 8.950210 TGAGAAAGAAGCTAAAATAGAATGTGG 58.050 33.333 0.00 0.00 0.00 4.17
615 1061 9.167311 GAGAAAGAAGCTAAAATAGAATGTGGA 57.833 33.333 0.00 0.00 0.00 4.02
616 1062 8.951243 AGAAAGAAGCTAAAATAGAATGTGGAC 58.049 33.333 0.00 0.00 0.00 4.02
617 1063 7.631717 AAGAAGCTAAAATAGAATGTGGACC 57.368 36.000 0.00 0.00 0.00 4.46
619 1065 5.353394 AGCTAAAATAGAATGTGGACCGA 57.647 39.130 0.00 0.00 0.00 4.69
620 1066 5.360591 AGCTAAAATAGAATGTGGACCGAG 58.639 41.667 0.00 0.00 0.00 4.63
621 1067 5.104900 AGCTAAAATAGAATGTGGACCGAGT 60.105 40.000 0.00 0.00 0.00 4.18
622 1068 5.006746 GCTAAAATAGAATGTGGACCGAGTG 59.993 44.000 0.00 0.00 0.00 3.51
624 1070 5.359194 AAATAGAATGTGGACCGAGTGAT 57.641 39.130 0.00 0.00 0.00 3.06
625 1071 2.969628 AGAATGTGGACCGAGTGATC 57.030 50.000 0.00 0.00 0.00 2.92
626 1072 2.179427 AGAATGTGGACCGAGTGATCA 58.821 47.619 0.00 0.00 0.00 2.92
627 1073 2.167281 AGAATGTGGACCGAGTGATCAG 59.833 50.000 0.00 0.00 0.00 2.90
633 1079 1.305297 ACCGAGTGATCAGGCCTCA 60.305 57.895 0.00 0.00 0.00 3.86
651 1097 1.272490 TCAGCTCTTGTGGTAGGAACG 59.728 52.381 0.00 0.00 0.00 3.95
677 1123 3.325870 CGTGCTCACCTCAAAGTATTCA 58.674 45.455 0.00 0.00 0.00 2.57
704 1155 3.202001 CCCATGCTACCAACGCGG 61.202 66.667 12.47 0.00 42.50 6.46
737 1188 2.858344 CAGCTTACGGTGTAGTGCATAC 59.142 50.000 0.00 0.00 34.04 2.39
738 1189 2.494471 AGCTTACGGTGTAGTGCATACA 59.506 45.455 0.00 0.00 42.21 2.29
739 1190 3.132289 AGCTTACGGTGTAGTGCATACAT 59.868 43.478 10.74 1.32 45.94 2.29
740 1191 4.340097 AGCTTACGGTGTAGTGCATACATA 59.660 41.667 10.74 0.60 45.94 2.29
752 1203 3.058016 GTGCATACATATCCACACCATGC 60.058 47.826 0.00 0.00 38.19 4.06
806 1259 2.767972 TCCAGATCATGTGATGGACCT 58.232 47.619 10.24 0.00 34.37 3.85
921 1402 3.876589 TTGCCCGCTCGTTCCTCAC 62.877 63.158 0.00 0.00 0.00 3.51
1125 1627 4.742440 GCTCCACGATTCTCTCTCTCTCTA 60.742 50.000 0.00 0.00 0.00 2.43
1141 1700 7.560368 TCTCTCTCTAAGCTTTCCCAAATTAG 58.440 38.462 3.20 0.00 0.00 1.73
1149 1708 1.555967 TTCCCAAATTAGCCTGTGCC 58.444 50.000 0.00 0.00 38.69 5.01
1165 1724 1.284408 GCCGTTGGTTGATCGCAAA 59.716 52.632 0.00 0.00 35.42 3.68
1195 1754 3.441572 GTGCTGCAATTTCCTAGTGATGT 59.558 43.478 2.77 0.00 0.00 3.06
1199 1758 5.928264 GCTGCAATTTCCTAGTGATGTTTTT 59.072 36.000 0.00 0.00 0.00 1.94
1201 1760 7.048629 TGCAATTTCCTAGTGATGTTTTTGA 57.951 32.000 0.00 0.00 0.00 2.69
1202 1761 6.922957 TGCAATTTCCTAGTGATGTTTTTGAC 59.077 34.615 0.00 0.00 0.00 3.18
1203 1762 6.922957 GCAATTTCCTAGTGATGTTTTTGACA 59.077 34.615 0.00 0.00 43.71 3.58
1204 1763 7.437862 GCAATTTCCTAGTGATGTTTTTGACAA 59.562 33.333 0.00 0.00 42.62 3.18
1205 1764 8.755018 CAATTTCCTAGTGATGTTTTTGACAAC 58.245 33.333 0.00 0.00 42.62 3.32
1206 1765 7.397892 TTTCCTAGTGATGTTTTTGACAACA 57.602 32.000 0.00 0.00 42.62 3.33
1207 1766 6.618287 TCCTAGTGATGTTTTTGACAACAG 57.382 37.500 0.00 0.00 41.07 3.16
1209 1768 6.260050 TCCTAGTGATGTTTTTGACAACAGTC 59.740 38.462 0.88 0.00 41.92 3.51
1210 1769 4.908736 AGTGATGTTTTTGACAACAGTCG 58.091 39.130 0.00 0.00 39.65 4.18
1211 1770 3.482110 GTGATGTTTTTGACAACAGTCGC 59.518 43.478 0.00 0.00 41.07 5.19
1212 1771 3.127721 TGATGTTTTTGACAACAGTCGCA 59.872 39.130 0.00 0.00 42.62 5.10
1213 1772 3.129852 TGTTTTTGACAACAGTCGCAG 57.870 42.857 0.00 0.00 34.69 5.18
1215 1774 3.098636 GTTTTTGACAACAGTCGCAGTC 58.901 45.455 0.00 0.00 35.00 3.51
1216 1775 1.295792 TTTGACAACAGTCGCAGTCC 58.704 50.000 0.00 0.00 35.00 3.85
1217 1776 0.464036 TTGACAACAGTCGCAGTCCT 59.536 50.000 0.00 0.00 35.00 3.85
1218 1777 1.324383 TGACAACAGTCGCAGTCCTA 58.676 50.000 0.00 0.00 35.00 2.94
1219 1778 1.893137 TGACAACAGTCGCAGTCCTAT 59.107 47.619 0.00 0.00 35.00 2.57
1220 1779 2.263077 GACAACAGTCGCAGTCCTATG 58.737 52.381 0.00 0.00 0.00 2.23
1254 1817 9.463902 TCTATATACGGGGAATTTCTCTCTTAG 57.536 37.037 0.00 0.00 0.00 2.18
1259 1822 4.402793 CGGGGAATTTCTCTCTTAGTCTCA 59.597 45.833 0.00 0.00 0.00 3.27
1260 1823 5.451242 CGGGGAATTTCTCTCTTAGTCTCAG 60.451 48.000 0.00 0.00 0.00 3.35
1263 1826 6.816140 GGGAATTTCTCTCTTAGTCTCAGTTG 59.184 42.308 0.00 0.00 0.00 3.16
1272 1835 8.311650 TCTCTTAGTCTCAGTTGCAAATTAAC 57.688 34.615 0.00 0.00 0.00 2.01
1417 2058 0.912486 CGGGGAAGGAGACCAAGAAT 59.088 55.000 0.00 0.00 0.00 2.40
1468 2109 5.914898 TGATAATGTTCTCTTCGGTGAGA 57.085 39.130 4.58 4.58 40.87 3.27
1472 2113 4.705337 ATGTTCTCTTCGGTGAGACTAC 57.295 45.455 7.59 5.89 42.11 2.73
1499 2140 4.563580 GCCCCGAATCTATTAGAGCATGAA 60.564 45.833 0.00 0.00 0.00 2.57
1548 2189 9.649316 ATCTATAGCCAACCTAATATACCTCTC 57.351 37.037 0.00 0.00 0.00 3.20
1579 2220 5.335583 CCACTGCAATTTCACGATTTAAGGA 60.336 40.000 0.00 0.00 0.00 3.36
1781 2423 9.374838 CATATCTTATCCATCAAATGACATCGA 57.625 33.333 0.00 0.00 0.00 3.59
1854 2497 9.408648 GATTTTCCTATTCCTATGAACCAAAGA 57.591 33.333 0.00 0.00 32.13 2.52
1867 2510 6.773976 TGAACCAAAGAAGGCCTAATTATG 57.226 37.500 5.16 1.73 0.00 1.90
1872 2515 7.054751 ACCAAAGAAGGCCTAATTATGTACTC 58.945 38.462 5.16 0.00 0.00 2.59
1917 2560 3.578688 TCCAGTCGATTCATATGCATCG 58.421 45.455 25.66 25.66 41.34 3.84
1925 2568 4.609113 CGATTCATATGCATCGGTGTTGTC 60.609 45.833 24.43 1.62 37.50 3.18
1926 2569 3.258971 TCATATGCATCGGTGTTGTCA 57.741 42.857 0.19 0.00 0.00 3.58
1927 2570 3.807553 TCATATGCATCGGTGTTGTCAT 58.192 40.909 0.19 0.00 0.00 3.06
2053 2974 5.862924 TTTCAAGTTCGCCTCTCATTAAG 57.137 39.130 0.00 0.00 0.00 1.85
2382 3308 0.036022 CTATGCTAGGGCTCAAGGGC 59.964 60.000 0.00 0.00 39.59 5.19
2573 3507 3.614870 GCCTTGGATTTTGCAGTTACCTG 60.615 47.826 0.00 0.00 41.91 4.00
2659 3593 5.340439 TGTAAACAAAATTGGTTTCGGGT 57.660 34.783 1.16 0.00 39.21 5.28
2709 3644 7.790673 CCGTTTATGTATTAATTACACTGTCGC 59.209 37.037 0.00 0.00 43.46 5.19
2728 3663 6.042777 TGTCGCAATACAACAAAATGGAAAA 58.957 32.000 0.00 0.00 0.00 2.29
2793 3728 0.796312 GGACGTCAATGTGCATCGTT 59.204 50.000 18.91 0.00 34.93 3.85
2810 3745 0.527565 GTTTGTCCATGCCGCATTCT 59.472 50.000 2.16 0.00 0.00 2.40
2834 3769 8.387039 TCTACAACTCTAGGCATCAGACTATAT 58.613 37.037 0.00 0.00 34.05 0.86
2859 3794 5.269505 ACTTTGCATCTACTACTAGCTGG 57.730 43.478 0.00 0.00 0.00 4.85
2860 3795 4.956700 ACTTTGCATCTACTACTAGCTGGA 59.043 41.667 3.17 0.00 0.00 3.86
2861 3796 5.068460 ACTTTGCATCTACTACTAGCTGGAG 59.932 44.000 3.17 0.00 0.00 3.86
2862 3797 4.171878 TGCATCTACTACTAGCTGGAGT 57.828 45.455 3.17 5.16 0.00 3.85
2863 3798 5.306114 TGCATCTACTACTAGCTGGAGTA 57.694 43.478 3.17 6.11 0.00 2.59
2882 3817 2.405618 ATCATACTAGCTGGAGGCCA 57.594 50.000 5.01 0.00 43.05 5.36
2943 3879 1.806542 CCCACACGAGATTTGTTGAGG 59.193 52.381 0.00 0.00 0.00 3.86
2954 3890 6.293955 CGAGATTTGTTGAGGTGGTTTGTTAT 60.294 38.462 0.00 0.00 0.00 1.89
2968 3904 9.616634 GGTGGTTTGTTATTTAACTACTTTAGC 57.383 33.333 0.00 0.00 36.39 3.09
3001 3937 4.272489 CAGATGGGTTTCCTGCTGAATTA 58.728 43.478 0.00 0.00 37.20 1.40
3003 3939 4.891756 AGATGGGTTTCCTGCTGAATTATG 59.108 41.667 0.00 0.00 31.67 1.90
3113 4050 4.873827 ACTTCGGCATGATTACGTTGTTAT 59.126 37.500 0.00 0.00 0.00 1.89
3398 4374 2.570365 AGGCAATGCGCATGAAAGA 58.430 47.368 26.09 0.00 45.17 2.52
3414 4390 6.349611 GCATGAAAGAATTTAGTGAGGCTTGA 60.350 38.462 0.00 0.00 39.27 3.02
3446 4422 1.611936 GGGTTCTCAAGTCCAGAAGGC 60.612 57.143 0.00 0.00 30.32 4.35
3479 4455 7.545615 CGGAATCAAGGTTAATGATGATATCGA 59.454 37.037 0.00 0.00 37.58 3.59
3530 4507 0.467384 CAGGGCGATTCCATGTCTCT 59.533 55.000 0.00 0.00 41.53 3.10
3532 4509 1.139853 AGGGCGATTCCATGTCTCTTC 59.860 52.381 0.00 0.00 36.21 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.488762 CCTGGTGGTAGATACATCCTATATAAA 57.511 37.037 0.00 0.00 0.00 1.40
34 35 8.852894 TCCTGGTGGTAGATACATCCTATATAA 58.147 37.037 0.00 0.00 34.23 0.98
35 36 8.415392 TCCTGGTGGTAGATACATCCTATATA 57.585 38.462 0.00 0.00 34.23 0.86
36 37 7.298678 TCCTGGTGGTAGATACATCCTATAT 57.701 40.000 0.00 0.00 34.23 0.86
37 38 6.730001 TCCTGGTGGTAGATACATCCTATA 57.270 41.667 0.00 0.00 34.23 1.31
38 39 5.616975 TCCTGGTGGTAGATACATCCTAT 57.383 43.478 0.00 0.00 34.23 2.57
39 40 5.145564 GTTCCTGGTGGTAGATACATCCTA 58.854 45.833 0.00 0.00 34.23 2.94
40 41 3.967987 GTTCCTGGTGGTAGATACATCCT 59.032 47.826 0.00 0.00 34.23 3.24
41 42 3.071167 GGTTCCTGGTGGTAGATACATCC 59.929 52.174 0.00 0.00 34.23 3.51
42 43 3.709653 TGGTTCCTGGTGGTAGATACATC 59.290 47.826 0.00 0.00 34.23 3.06
43 44 3.731431 TGGTTCCTGGTGGTAGATACAT 58.269 45.455 0.00 0.00 34.23 2.29
44 45 3.193395 TGGTTCCTGGTGGTAGATACA 57.807 47.619 0.00 0.00 34.23 2.29
45 46 4.019591 ACTTTGGTTCCTGGTGGTAGATAC 60.020 45.833 0.00 0.00 34.23 2.24
46 47 4.019681 CACTTTGGTTCCTGGTGGTAGATA 60.020 45.833 0.00 0.00 34.23 1.98
47 48 2.986728 ACTTTGGTTCCTGGTGGTAGAT 59.013 45.455 0.00 0.00 34.23 1.98
48 49 2.105821 CACTTTGGTTCCTGGTGGTAGA 59.894 50.000 0.00 0.00 34.23 2.59
49 50 2.158667 ACACTTTGGTTCCTGGTGGTAG 60.159 50.000 0.00 0.00 32.88 3.18
50 51 1.847737 ACACTTTGGTTCCTGGTGGTA 59.152 47.619 0.00 0.00 32.88 3.25
51 52 0.629058 ACACTTTGGTTCCTGGTGGT 59.371 50.000 0.00 0.00 32.88 4.16
52 53 2.649531 TACACTTTGGTTCCTGGTGG 57.350 50.000 0.00 0.00 32.88 4.61
53 54 3.506067 GGAATACACTTTGGTTCCTGGTG 59.494 47.826 0.00 0.00 35.06 4.17
54 55 3.763057 GGAATACACTTTGGTTCCTGGT 58.237 45.455 0.00 0.00 35.06 4.00
55 56 2.747446 CGGAATACACTTTGGTTCCTGG 59.253 50.000 9.52 0.00 35.47 4.45
56 57 2.161609 GCGGAATACACTTTGGTTCCTG 59.838 50.000 9.52 5.97 35.47 3.86
57 58 2.433436 GCGGAATACACTTTGGTTCCT 58.567 47.619 9.52 0.00 35.47 3.36
58 59 1.471287 GGCGGAATACACTTTGGTTCC 59.529 52.381 0.00 0.00 34.78 3.62
59 60 2.418976 GAGGCGGAATACACTTTGGTTC 59.581 50.000 0.00 0.00 0.00 3.62
60 61 2.224670 TGAGGCGGAATACACTTTGGTT 60.225 45.455 0.00 0.00 0.00 3.67
61 62 1.349688 TGAGGCGGAATACACTTTGGT 59.650 47.619 0.00 0.00 0.00 3.67
62 63 1.737793 GTGAGGCGGAATACACTTTGG 59.262 52.381 0.00 0.00 0.00 3.28
63 64 1.737793 GGTGAGGCGGAATACACTTTG 59.262 52.381 0.00 0.00 34.28 2.77
64 65 1.339727 GGGTGAGGCGGAATACACTTT 60.340 52.381 0.00 0.00 34.28 2.66
65 66 0.252197 GGGTGAGGCGGAATACACTT 59.748 55.000 0.00 0.00 34.28 3.16
66 67 0.907704 TGGGTGAGGCGGAATACACT 60.908 55.000 0.00 0.00 34.28 3.55
67 68 0.462047 CTGGGTGAGGCGGAATACAC 60.462 60.000 0.00 0.00 0.00 2.90
68 69 1.904771 CTGGGTGAGGCGGAATACA 59.095 57.895 0.00 0.00 0.00 2.29
69 70 1.523938 GCTGGGTGAGGCGGAATAC 60.524 63.158 0.00 0.00 0.00 1.89
70 71 1.271840 AAGCTGGGTGAGGCGGAATA 61.272 55.000 0.00 0.00 0.00 1.75
71 72 2.606587 AAGCTGGGTGAGGCGGAAT 61.607 57.895 0.00 0.00 0.00 3.01
72 73 3.249189 AAGCTGGGTGAGGCGGAA 61.249 61.111 0.00 0.00 0.00 4.30
73 74 4.020617 CAAGCTGGGTGAGGCGGA 62.021 66.667 0.00 0.00 0.00 5.54
75 76 3.315142 TAGCAAGCTGGGTGAGGCG 62.315 63.158 2.13 0.00 0.00 5.52
76 77 1.451028 CTAGCAAGCTGGGTGAGGC 60.451 63.158 2.13 0.00 0.00 4.70
77 78 1.134670 GTACTAGCAAGCTGGGTGAGG 60.135 57.143 2.13 0.00 0.00 3.86
80 81 1.469940 CGAGTACTAGCAAGCTGGGTG 60.470 57.143 2.13 0.00 0.00 4.61
166 173 4.837860 AGGAGATGACAGGATAAGATCACC 59.162 45.833 0.00 0.00 0.00 4.02
180 188 0.529555 GCGCTCAGGAAGGAGATGAC 60.530 60.000 0.00 0.00 37.05 3.06
181 189 0.972471 TGCGCTCAGGAAGGAGATGA 60.972 55.000 9.73 0.00 37.05 2.92
295 726 4.151867 GTCGAACAATGACTTGGGTAACTC 59.848 45.833 0.00 0.00 36.64 3.01
336 769 9.459640 GTTGGTAATTTTTAACTGAAAGGAGAC 57.540 33.333 0.00 0.00 39.30 3.36
337 770 9.191479 TGTTGGTAATTTTTAACTGAAAGGAGA 57.809 29.630 0.00 0.00 39.30 3.71
338 771 9.810545 TTGTTGGTAATTTTTAACTGAAAGGAG 57.189 29.630 0.00 0.00 39.30 3.69
339 772 9.810545 CTTGTTGGTAATTTTTAACTGAAAGGA 57.189 29.630 0.00 0.00 39.30 3.36
358 793 4.023536 ACGGTGTAGTTAATTGCTTGTTGG 60.024 41.667 0.00 0.00 0.00 3.77
359 800 5.103290 ACGGTGTAGTTAATTGCTTGTTG 57.897 39.130 0.00 0.00 0.00 3.33
435 880 1.477558 CCATGTAACTGGGGCAGATCC 60.478 57.143 0.00 0.00 35.18 3.36
489 935 2.433664 CCGGGTGGAGCACGTAAC 60.434 66.667 0.00 0.00 43.72 2.50
545 991 2.096406 CTCGTTCACGCATTGCCG 59.904 61.111 2.41 0.33 39.60 5.69
576 1022 4.702392 CTTCTTTCTCACGTTCATTTCCG 58.298 43.478 0.00 0.00 0.00 4.30
577 1023 4.214332 AGCTTCTTTCTCACGTTCATTTCC 59.786 41.667 0.00 0.00 0.00 3.13
582 1028 6.861065 ATTTTAGCTTCTTTCTCACGTTCA 57.139 33.333 0.00 0.00 0.00 3.18
599 1045 6.338146 TCACTCGGTCCACATTCTATTTTAG 58.662 40.000 0.00 0.00 0.00 1.85
603 1049 4.405680 TGATCACTCGGTCCACATTCTATT 59.594 41.667 0.00 0.00 0.00 1.73
605 1051 3.361786 TGATCACTCGGTCCACATTCTA 58.638 45.455 0.00 0.00 0.00 2.10
607 1053 2.544685 CTGATCACTCGGTCCACATTC 58.455 52.381 0.00 0.00 0.00 2.67
611 1057 1.153549 GCCTGATCACTCGGTCCAC 60.154 63.158 0.00 0.00 0.00 4.02
612 1058 2.359169 GGCCTGATCACTCGGTCCA 61.359 63.158 0.00 0.00 0.00 4.02
613 1059 2.022240 GAGGCCTGATCACTCGGTCC 62.022 65.000 12.00 3.41 0.00 4.46
614 1060 1.323271 TGAGGCCTGATCACTCGGTC 61.323 60.000 12.00 2.19 34.03 4.79
615 1061 1.305297 TGAGGCCTGATCACTCGGT 60.305 57.895 12.00 0.00 34.03 4.69
616 1062 1.440893 CTGAGGCCTGATCACTCGG 59.559 63.158 12.00 6.32 34.03 4.63
617 1063 1.227205 GCTGAGGCCTGATCACTCG 60.227 63.158 12.00 0.00 34.03 4.18
619 1065 0.325484 AGAGCTGAGGCCTGATCACT 60.325 55.000 12.00 0.00 39.73 3.41
620 1066 0.540923 AAGAGCTGAGGCCTGATCAC 59.459 55.000 12.00 0.00 39.73 3.06
621 1067 0.540454 CAAGAGCTGAGGCCTGATCA 59.460 55.000 12.00 0.05 39.73 2.92
622 1068 0.540923 ACAAGAGCTGAGGCCTGATC 59.459 55.000 12.00 4.75 39.73 2.92
624 1070 1.675801 CACAAGAGCTGAGGCCTGA 59.324 57.895 12.00 0.00 39.73 3.86
625 1071 1.376942 CCACAAGAGCTGAGGCCTG 60.377 63.158 12.00 0.00 39.73 4.85
626 1072 0.545309 TACCACAAGAGCTGAGGCCT 60.545 55.000 3.86 3.86 39.28 5.19
627 1073 0.107945 CTACCACAAGAGCTGAGGCC 60.108 60.000 0.00 0.00 39.28 5.19
633 1079 1.546476 CTCGTTCCTACCACAAGAGCT 59.454 52.381 0.00 0.00 0.00 4.09
651 1097 0.319900 TTTGAGGTGAGCACGCTCTC 60.320 55.000 19.17 15.33 43.12 3.20
677 1123 2.666596 GTAGCATGGGCGGCTAGCTT 62.667 60.000 22.83 11.23 43.96 3.74
704 1155 2.474816 CGTAAGCTGATTAGGCTCCAC 58.525 52.381 0.00 0.00 39.30 4.02
705 1156 1.412710 CCGTAAGCTGATTAGGCTCCA 59.587 52.381 0.00 0.00 39.30 3.86
706 1157 1.413077 ACCGTAAGCTGATTAGGCTCC 59.587 52.381 0.00 0.00 39.30 4.70
737 1188 2.356695 CACTGTGCATGGTGTGGATATG 59.643 50.000 12.06 0.00 0.00 1.78
738 1189 2.239402 TCACTGTGCATGGTGTGGATAT 59.761 45.455 17.38 0.00 35.26 1.63
739 1190 1.627834 TCACTGTGCATGGTGTGGATA 59.372 47.619 17.38 0.85 35.26 2.59
740 1191 0.401356 TCACTGTGCATGGTGTGGAT 59.599 50.000 17.38 0.00 35.26 3.41
752 1203 4.415150 ATGCGGGGGCTCACTGTG 62.415 66.667 0.17 0.17 0.00 3.66
813 1266 0.890542 TGTCCCACTCATGCACTTGC 60.891 55.000 0.00 0.00 42.50 4.01
904 1385 4.373116 GTGAGGAACGAGCGGGCA 62.373 66.667 0.00 0.00 0.00 5.36
921 1402 2.358737 GTGGAGACGGCCAACAGG 60.359 66.667 2.24 0.00 40.20 4.00
1125 1627 3.259123 CACAGGCTAATTTGGGAAAGCTT 59.741 43.478 0.00 0.00 35.30 3.74
1141 1700 2.200170 GATCAACCAACGGCACAGGC 62.200 60.000 0.00 0.00 40.13 4.85
1149 1708 1.394697 GTGTTTGCGATCAACCAACG 58.605 50.000 0.00 0.00 30.75 4.10
1165 1724 1.532868 GAAATTGCAGCACTCTCGTGT 59.467 47.619 0.00 0.00 43.16 4.49
1169 1728 3.373439 CACTAGGAAATTGCAGCACTCTC 59.627 47.826 0.00 0.00 0.00 3.20
1180 1739 8.474025 TGTTGTCAAAAACATCACTAGGAAATT 58.526 29.630 0.00 0.00 37.82 1.82
1182 1741 7.122055 ACTGTTGTCAAAAACATCACTAGGAAA 59.878 33.333 0.00 0.00 39.25 3.13
1195 1754 2.096819 GGACTGCGACTGTTGTCAAAAA 59.903 45.455 0.00 0.00 43.06 1.94
1199 1758 1.324383 TAGGACTGCGACTGTTGTCA 58.676 50.000 0.00 0.00 43.06 3.58
1201 1760 1.893137 TCATAGGACTGCGACTGTTGT 59.107 47.619 0.00 0.00 0.00 3.32
1202 1761 2.654749 TCATAGGACTGCGACTGTTG 57.345 50.000 0.00 0.00 0.00 3.33
1203 1762 2.760650 TCATCATAGGACTGCGACTGTT 59.239 45.455 0.00 0.00 0.00 3.16
1204 1763 2.379005 TCATCATAGGACTGCGACTGT 58.621 47.619 0.00 0.00 0.00 3.55
1205 1764 3.005155 TGATCATCATAGGACTGCGACTG 59.995 47.826 0.00 0.00 0.00 3.51
1206 1765 3.225940 TGATCATCATAGGACTGCGACT 58.774 45.455 0.00 0.00 0.00 4.18
1207 1766 3.650070 TGATCATCATAGGACTGCGAC 57.350 47.619 0.00 0.00 0.00 5.19
1209 1768 4.453177 AGATGATCATCATAGGACTGCG 57.547 45.455 31.99 0.00 37.20 5.18
1212 1771 9.513906 CCGTATATAGATGATCATCATAGGACT 57.486 37.037 31.99 15.55 37.20 3.85
1213 1772 8.735315 CCCGTATATAGATGATCATCATAGGAC 58.265 40.741 31.99 23.49 37.20 3.85
1215 1774 7.890655 TCCCCGTATATAGATGATCATCATAGG 59.109 40.741 31.99 24.08 37.20 2.57
1216 1775 8.870075 TCCCCGTATATAGATGATCATCATAG 57.130 38.462 31.99 17.23 37.20 2.23
1217 1776 9.828691 ATTCCCCGTATATAGATGATCATCATA 57.171 33.333 31.99 25.36 37.20 2.15
1218 1777 8.733092 ATTCCCCGTATATAGATGATCATCAT 57.267 34.615 31.99 24.34 40.34 2.45
1219 1778 8.553085 AATTCCCCGTATATAGATGATCATCA 57.447 34.615 31.99 20.29 40.22 3.07
1220 1779 9.482627 GAAATTCCCCGTATATAGATGATCATC 57.517 37.037 25.42 25.42 38.09 2.92
1259 1822 7.661847 AGCTAGAACTACAGTTAATTTGCAACT 59.338 33.333 0.00 0.00 38.56 3.16
1260 1823 7.807680 AGCTAGAACTACAGTTAATTTGCAAC 58.192 34.615 0.00 0.00 38.56 4.17
1263 1826 9.756461 GTAAAGCTAGAACTACAGTTAATTTGC 57.244 33.333 0.00 0.00 38.56 3.68
1272 1835 7.379750 AGTTTGAGGTAAAGCTAGAACTACAG 58.620 38.462 0.00 0.00 0.00 2.74
1468 2109 2.097110 TAGATTCGGGGCATGGTAGT 57.903 50.000 0.00 0.00 0.00 2.73
1472 2113 3.866651 CTCTAATAGATTCGGGGCATGG 58.133 50.000 0.00 0.00 0.00 3.66
1548 2189 0.109597 GAAATTGCAGTGGGTCGCTG 60.110 55.000 4.30 4.30 43.89 5.18
1579 2220 8.293699 ACAAAGTTCTTGTAAATCAAAGGAGT 57.706 30.769 0.00 0.00 35.48 3.85
1633 2274 7.743104 TGAAAGAGCTCTGAACGAATATTTTC 58.257 34.615 19.06 12.63 0.00 2.29
1638 2279 6.650807 ACAAATGAAAGAGCTCTGAACGAATA 59.349 34.615 19.06 0.00 0.00 1.75
1761 2403 9.948964 AAGATATCGATGTCATTTGATGGATAA 57.051 29.630 22.18 0.00 0.00 1.75
1802 2444 9.761504 CATAGAAAGTGAGATGACATGTATCTT 57.238 33.333 14.85 0.00 35.14 2.40
1884 2527 3.433306 TCGACTGGAATTCATGGGTTT 57.567 42.857 7.93 0.00 0.00 3.27
1953 2874 9.289303 CAAAATCCGACAATATTTTCCTAACAG 57.711 33.333 0.00 0.00 34.01 3.16
1954 2875 9.015367 TCAAAATCCGACAATATTTTCCTAACA 57.985 29.630 0.00 0.00 34.01 2.41
1959 2880 6.811170 TGCTTCAAAATCCGACAATATTTTCC 59.189 34.615 0.00 0.00 34.01 3.13
1960 2881 7.810766 TGCTTCAAAATCCGACAATATTTTC 57.189 32.000 0.00 0.00 34.01 2.29
2053 2974 8.548721 CGAGGGATTATTGAGTTACAATGTAAC 58.451 37.037 24.29 24.29 46.93 2.50
2547 3481 1.345415 ACTGCAAAATCCAAGGCCAAG 59.655 47.619 5.01 0.00 0.00 3.61
2573 3507 2.355197 GCTTCAGGCTCTTTCTTCTCC 58.645 52.381 0.00 0.00 38.06 3.71
2683 3617 7.790673 GCGACAGTGTAATTAATACATAAACGG 59.209 37.037 0.00 0.00 45.87 4.44
2709 3644 8.934825 CATAGGGTTTTCCATTTTGTTGTATTG 58.065 33.333 0.00 0.00 42.91 1.90
2728 3663 4.712337 GGATCTCATTCCGTATCATAGGGT 59.288 45.833 3.29 0.00 35.31 4.34
2793 3728 1.339535 TGTAGAATGCGGCATGGACAA 60.340 47.619 17.43 0.00 0.00 3.18
2834 3769 7.942894 TCCAGCTAGTAGTAGATGCAAAGTATA 59.057 37.037 15.96 0.00 40.72 1.47
2849 3784 7.279981 CAGCTAGTATGATACTCCAGCTAGTAG 59.720 44.444 22.64 11.56 44.63 2.57
2850 3785 7.106890 CAGCTAGTATGATACTCCAGCTAGTA 58.893 42.308 22.64 0.00 44.63 1.82
2851 3786 5.943416 CAGCTAGTATGATACTCCAGCTAGT 59.057 44.000 22.64 5.91 44.63 2.57
2852 3787 5.356751 CCAGCTAGTATGATACTCCAGCTAG 59.643 48.000 22.64 15.41 44.63 3.42
2853 3788 5.014228 TCCAGCTAGTATGATACTCCAGCTA 59.986 44.000 22.64 10.96 44.63 3.32
2854 3789 4.085733 CCAGCTAGTATGATACTCCAGCT 58.914 47.826 19.24 19.24 46.35 4.24
2855 3790 4.082845 TCCAGCTAGTATGATACTCCAGC 58.917 47.826 16.04 16.04 39.52 4.85
2856 3791 4.704540 CCTCCAGCTAGTATGATACTCCAG 59.295 50.000 8.63 3.27 40.14 3.86
2857 3792 4.667573 CCTCCAGCTAGTATGATACTCCA 58.332 47.826 8.63 0.00 40.14 3.86
2858 3793 3.445805 GCCTCCAGCTAGTATGATACTCC 59.554 52.174 8.63 1.97 40.14 3.85
2859 3794 3.445805 GGCCTCCAGCTAGTATGATACTC 59.554 52.174 8.63 0.00 43.05 2.59
2860 3795 3.181417 TGGCCTCCAGCTAGTATGATACT 60.181 47.826 10.33 10.33 43.05 2.12
2861 3796 3.165875 TGGCCTCCAGCTAGTATGATAC 58.834 50.000 3.32 0.00 43.05 2.24
2862 3797 3.542969 TGGCCTCCAGCTAGTATGATA 57.457 47.619 3.32 0.00 43.05 2.15
2863 3798 2.405618 TGGCCTCCAGCTAGTATGAT 57.594 50.000 3.32 0.00 43.05 2.45
2882 3817 2.578021 ACCTTCATGCACCTTACCAGAT 59.422 45.455 0.00 0.00 0.00 2.90
2954 3890 5.993441 GTCCTGGTGTGCTAAAGTAGTTAAA 59.007 40.000 0.00 0.00 0.00 1.52
2967 3903 1.377725 CCATCTGGTCCTGGTGTGC 60.378 63.158 8.11 0.00 0.00 4.57
2968 3904 1.300963 CCCATCTGGTCCTGGTGTG 59.699 63.158 8.11 0.00 0.00 3.82
2969 3905 3.826282 CCCATCTGGTCCTGGTGT 58.174 61.111 8.11 0.00 0.00 4.16
3113 4050 4.273480 CCGAACTGCTTCTTCTTTCTTTGA 59.727 41.667 0.00 0.00 0.00 2.69
3398 4374 3.695830 TCCGTCAAGCCTCACTAAATT 57.304 42.857 0.00 0.00 0.00 1.82
3446 4422 6.338146 TCATTAACCTTGATTCCGACACTAG 58.662 40.000 0.00 0.00 0.00 2.57
3479 4455 6.780522 ACCCTTGTGTGTCTAAAAATAATGGT 59.219 34.615 0.00 0.00 0.00 3.55
3530 4507 6.058833 TCAGCCACTATGTTAAACAACAGAA 58.941 36.000 3.61 0.00 35.95 3.02
3532 4509 5.940192 TCAGCCACTATGTTAAACAACAG 57.060 39.130 0.00 0.06 35.95 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.