Multiple sequence alignment - TraesCS1D01G073700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G073700 chr1D 100.000 3033 0 0 445 3477 54927857 54924825 0.000000e+00 5602.0
1 TraesCS1D01G073700 chr1D 96.008 526 21 0 445 970 110013512 110012987 0.000000e+00 856.0
2 TraesCS1D01G073700 chr1D 95.842 481 19 1 490 969 439210529 439210049 0.000000e+00 776.0
3 TraesCS1D01G073700 chr1D 100.000 143 0 0 1 143 54928301 54928159 7.400000e-67 265.0
4 TraesCS1D01G073700 chr1D 92.308 143 3 3 1 143 110013642 110013508 2.740000e-46 196.0
5 TraesCS1D01G073700 chr1A 92.453 1272 46 16 1775 3004 53997040 53995777 0.000000e+00 1772.0
6 TraesCS1D01G073700 chr1A 95.028 362 18 0 981 1342 53997389 53997028 1.400000e-158 569.0
7 TraesCS1D01G073700 chr1B 92.492 1212 66 12 1780 2978 90543990 90542791 0.000000e+00 1711.0
8 TraesCS1D01G073700 chr1B 91.762 522 40 3 2258 2779 90405969 90406487 0.000000e+00 723.0
9 TraesCS1D01G073700 chr1B 93.817 372 23 0 971 1342 90544354 90543983 8.430000e-156 560.0
10 TraesCS1D01G073700 chr1B 91.257 183 16 0 2796 2978 90412225 90412407 2.070000e-62 250.0
11 TraesCS1D01G073700 chrUn 92.275 1165 65 12 1827 2978 427096637 427097789 0.000000e+00 1629.0
12 TraesCS1D01G073700 chrUn 92.254 426 32 1 2258 2683 474496894 474496470 1.380000e-168 603.0
13 TraesCS1D01G073700 chrUn 91.257 183 16 0 2796 2978 322270105 322269923 2.070000e-62 250.0
14 TraesCS1D01G073700 chrUn 91.257 183 16 0 2796 2978 397042046 397042228 2.070000e-62 250.0
15 TraesCS1D01G073700 chr3D 97.333 525 14 0 445 969 61846137 61846661 0.000000e+00 893.0
16 TraesCS1D01G073700 chr3D 96.008 526 20 1 445 969 419989097 419988572 0.000000e+00 854.0
17 TraesCS1D01G073700 chr3D 96.040 202 5 1 1342 1540 573156364 573156163 3.350000e-85 326.0
18 TraesCS1D01G073700 chr3D 97.701 174 2 2 1607 1779 2246872 2247044 7.300000e-77 298.0
19 TraesCS1D01G073700 chr3D 93.007 143 3 2 1 143 419989228 419989093 5.880000e-48 202.0
20 TraesCS1D01G073700 chr3D 91.608 143 5 2 1 143 61846006 61846141 1.270000e-44 191.0
21 TraesCS1D01G073700 chr3D 97.826 46 1 0 1340 1385 2245396 2245441 2.880000e-11 80.5
22 TraesCS1D01G073700 chr6D 94.590 536 28 1 445 979 37882047 37881512 0.000000e+00 828.0
23 TraesCS1D01G073700 chr6D 93.295 522 31 4 453 971 361418964 361418444 0.000000e+00 767.0
24 TraesCS1D01G073700 chr6D 97.727 264 1 2 1343 1606 465187757 465188015 1.900000e-122 449.0
25 TraesCS1D01G073700 chr6D 97.890 237 1 2 1343 1579 465187061 465187293 1.160000e-109 407.0
26 TraesCS1D01G073700 chr6D 98.421 190 2 1 1417 1606 395331516 395331328 2.000000e-87 333.0
27 TraesCS1D01G073700 chr6D 98.851 174 2 0 1607 1780 395319733 395319560 9.370000e-81 311.0
28 TraesCS1D01G073700 chr6D 98.824 170 2 0 1607 1776 465190971 465191140 1.570000e-78 303.0
29 TraesCS1D01G073700 chr6D 98.507 67 0 1 1343 1409 395331828 395331763 2.190000e-22 117.0
30 TraesCS1D01G073700 chr7D 94.521 511 26 2 445 953 621138003 621138513 0.000000e+00 787.0
31 TraesCS1D01G073700 chr7D 94.802 481 24 1 490 969 179222545 179222065 0.000000e+00 749.0
32 TraesCS1D01G073700 chr7D 99.734 376 1 0 1404 1779 70070683 70071058 0.000000e+00 689.0
33 TraesCS1D01G073700 chr7D 97.368 266 3 1 1341 1606 180772211 180772472 1.900000e-122 449.0
34 TraesCS1D01G073700 chr7D 97.358 265 1 2 1343 1606 612424008 612424267 2.460000e-121 446.0
35 TraesCS1D01G073700 chr7D 97.740 177 3 1 1607 1782 8440082 8439906 1.570000e-78 303.0
36 TraesCS1D01G073700 chr7D 99.401 167 1 0 1440 1606 8452236 8452070 1.570000e-78 303.0
37 TraesCS1D01G073700 chr7D 98.276 174 2 1 1607 1779 612426346 612426519 1.570000e-78 303.0
38 TraesCS1D01G073700 chr7D 97.143 175 4 1 1607 1780 126609631 126609457 9.440000e-76 294.0
39 TraesCS1D01G073700 chr7D 97.126 174 4 1 1607 1779 180788886 180789059 3.390000e-75 292.0
40 TraesCS1D01G073700 chr7D 93.706 143 2 1 1 143 36376094 36375959 1.260000e-49 207.0
41 TraesCS1D01G073700 chr7D 92.414 145 6 3 1 143 621137866 621138007 5.880000e-48 202.0
42 TraesCS1D01G073700 chr7D 100.000 37 0 0 1346 1382 126611400 126611364 6.230000e-08 69.4
43 TraesCS1D01G073700 chr4D 93.702 524 29 4 445 965 445095619 445095097 0.000000e+00 782.0
44 TraesCS1D01G073700 chr4D 93.750 144 4 3 1 143 445095754 445095615 9.780000e-51 211.0
45 TraesCS1D01G073700 chr2D 78.715 1245 210 34 1772 2979 337923395 337924621 0.000000e+00 780.0
46 TraesCS1D01G073700 chr2D 96.377 276 5 4 1332 1606 537452263 537452534 1.900000e-122 449.0
47 TraesCS1D01G073700 chr2D 84.923 325 47 2 1019 1342 337923087 337923410 9.310000e-86 327.0
48 TraesCS1D01G073700 chr2D 97.714 175 2 2 1607 1779 537454070 537454244 2.030000e-77 300.0
49 TraesCS1D01G073700 chr2B 78.658 1237 212 30 1779 2979 405262660 405263880 0.000000e+00 774.0
50 TraesCS1D01G073700 chr2B 84.000 325 50 2 1019 1342 405262345 405262668 9.370000e-81 311.0
51 TraesCS1D01G073700 chr2A 81.630 871 126 16 2048 2892 448153735 448154597 0.000000e+00 691.0
52 TraesCS1D01G073700 chr2A 84.384 333 48 3 1019 1350 448153115 448153444 1.200000e-84 324.0
53 TraesCS1D01G073700 chr5B 81.538 325 58 2 1018 1341 611868535 611868858 2.060000e-67 267.0
54 TraesCS1D01G073700 chr5A 79.630 324 66 0 1018 1341 619359820 619360143 2.090000e-57 233.0
55 TraesCS1D01G073700 chr5D 78.679 333 69 2 1008 1339 495290516 495290847 1.620000e-53 220.0
56 TraesCS1D01G073700 chr5D 79.522 293 56 4 1016 1306 416259148 416258858 4.550000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G073700 chr1D 54924825 54928301 3476 True 2933.500000 5602 100.0000 1 3477 2 chr1D.!!$R2 3476
1 TraesCS1D01G073700 chr1D 110012987 110013642 655 True 526.000000 856 94.1580 1 970 2 chr1D.!!$R3 969
2 TraesCS1D01G073700 chr1A 53995777 53997389 1612 True 1170.500000 1772 93.7405 981 3004 2 chr1A.!!$R1 2023
3 TraesCS1D01G073700 chr1B 90542791 90544354 1563 True 1135.500000 1711 93.1545 971 2978 2 chr1B.!!$R1 2007
4 TraesCS1D01G073700 chr1B 90405969 90406487 518 False 723.000000 723 91.7620 2258 2779 1 chr1B.!!$F1 521
5 TraesCS1D01G073700 chrUn 427096637 427097789 1152 False 1629.000000 1629 92.2750 1827 2978 1 chrUn.!!$F2 1151
6 TraesCS1D01G073700 chr3D 61846006 61846661 655 False 542.000000 893 94.4705 1 969 2 chr3D.!!$F2 968
7 TraesCS1D01G073700 chr3D 419988572 419989228 656 True 528.000000 854 94.5075 1 969 2 chr3D.!!$R2 968
8 TraesCS1D01G073700 chr6D 37881512 37882047 535 True 828.000000 828 94.5900 445 979 1 chr6D.!!$R1 534
9 TraesCS1D01G073700 chr6D 361418444 361418964 520 True 767.000000 767 93.2950 453 971 1 chr6D.!!$R2 518
10 TraesCS1D01G073700 chr6D 465187061 465191140 4079 False 386.333333 449 98.1470 1343 1776 3 chr6D.!!$F1 433
11 TraesCS1D01G073700 chr6D 395331328 395331828 500 True 225.000000 333 98.4640 1343 1606 2 chr6D.!!$R4 263
12 TraesCS1D01G073700 chr7D 621137866 621138513 647 False 494.500000 787 93.4675 1 953 2 chr7D.!!$F5 952
13 TraesCS1D01G073700 chr7D 612424008 612426519 2511 False 374.500000 446 97.8170 1343 1779 2 chr7D.!!$F4 436
14 TraesCS1D01G073700 chr4D 445095097 445095754 657 True 496.500000 782 93.7260 1 965 2 chr4D.!!$R1 964
15 TraesCS1D01G073700 chr2D 337923087 337924621 1534 False 553.500000 780 81.8190 1019 2979 2 chr2D.!!$F1 1960
16 TraesCS1D01G073700 chr2D 537452263 537454244 1981 False 374.500000 449 97.0455 1332 1779 2 chr2D.!!$F2 447
17 TraesCS1D01G073700 chr2B 405262345 405263880 1535 False 542.500000 774 81.3290 1019 2979 2 chr2B.!!$F1 1960
18 TraesCS1D01G073700 chr2A 448153115 448154597 1482 False 507.500000 691 83.0070 1019 2892 2 chr2A.!!$F1 1873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 97 1.076995 CCCGGAAGAAATCACCCCC 60.077 63.158 0.73 0.0 0.00 5.40 F
1095 1108 1.153005 GGAGATGGCCAAGCTCCTG 60.153 63.158 34.28 0.0 43.79 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 5901 0.322648 AAAAATGAAGCAGCAGCCCC 59.677 50.0 0.0 0.0 43.56 5.80 R
3053 7063 0.889186 GCGGGCTCCAGTTTGAAGAA 60.889 55.0 0.0 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 2.363018 CTCCCTCCGTCTCAGGCA 60.363 66.667 0.00 0.00 0.00 4.75
91 97 1.076995 CCCGGAAGAAATCACCCCC 60.077 63.158 0.73 0.00 0.00 5.40
141 151 3.741476 GCAAGGCCAGCGTTGAGG 61.741 66.667 24.70 3.38 42.36 3.86
142 152 2.032528 CAAGGCCAGCGTTGAGGA 59.967 61.111 17.74 0.00 42.36 3.71
475 485 1.291877 AATCGCACAACGGAGACAGC 61.292 55.000 0.00 0.00 43.89 4.40
481 491 1.734477 CAACGGAGACAGCCTGACG 60.734 63.158 0.00 0.00 0.00 4.35
686 696 2.194212 GGAGGAGACGATGGCGCTA 61.194 63.158 7.64 0.00 42.48 4.26
753 763 2.360980 CCTCTCCCTCGACACCCT 59.639 66.667 0.00 0.00 0.00 4.34
766 776 2.119832 ACCCTGGGCTACGACACT 59.880 61.111 14.08 0.00 0.00 3.55
947 960 1.975363 GAGACAGCAATCCAGCGCAC 61.975 60.000 11.47 0.00 40.15 5.34
971 984 1.787155 CGCGATTCAGAATTCGGGTAG 59.213 52.381 0.00 0.00 34.58 3.18
992 1005 3.330701 AGAAAGATAGGGGAAAGTGTGCA 59.669 43.478 0.00 0.00 0.00 4.57
1092 1105 1.823041 GCTGGAGATGGCCAAGCTC 60.823 63.158 23.79 23.79 37.52 4.09
1095 1108 1.153005 GGAGATGGCCAAGCTCCTG 60.153 63.158 34.28 0.00 43.79 3.86
1279 1292 2.406616 GCCCTGTGTTACGCCATGG 61.407 63.158 7.63 7.63 0.00 3.66
1280 1293 2.406616 CCCTGTGTTACGCCATGGC 61.407 63.158 27.67 27.67 37.85 4.40
1304 1317 1.541368 CCTTTCTCCCCCACCTCCA 60.541 63.158 0.00 0.00 0.00 3.86
1847 5774 4.569023 TCAGCTACGATGCCGCGG 62.569 66.667 24.05 24.05 39.95 6.46
1906 5833 4.424711 GCCTGCGGGTTCATGGGA 62.425 66.667 14.55 0.00 34.45 4.37
1974 5901 0.950116 GGTCTATCTACACCGTCCCG 59.050 60.000 0.00 0.00 0.00 5.14
2074 6048 2.029844 GGAGCAGCTGACGGACAAC 61.030 63.158 20.43 0.00 0.00 3.32
2179 6153 2.286559 CGACCGCGACGACATCATC 61.287 63.158 8.23 0.00 40.82 2.92
2180 6154 1.944676 GACCGCGACGACATCATCC 60.945 63.158 8.23 0.00 0.00 3.51
2181 6155 2.337749 GACCGCGACGACATCATCCT 62.338 60.000 8.23 0.00 0.00 3.24
2182 6156 1.658717 CCGCGACGACATCATCCTC 60.659 63.158 8.23 0.00 0.00 3.71
2183 6157 1.064134 CGCGACGACATCATCCTCA 59.936 57.895 0.00 0.00 0.00 3.86
2184 6158 0.525455 CGCGACGACATCATCCTCAA 60.525 55.000 0.00 0.00 0.00 3.02
2185 6159 0.924090 GCGACGACATCATCCTCAAC 59.076 55.000 0.00 0.00 0.00 3.18
2186 6160 1.469940 GCGACGACATCATCCTCAACT 60.470 52.381 0.00 0.00 0.00 3.16
2187 6161 2.223502 GCGACGACATCATCCTCAACTA 60.224 50.000 0.00 0.00 0.00 2.24
2229 6203 3.071206 GAGAGGCTGTCGCTCCCA 61.071 66.667 1.22 0.00 36.48 4.37
2335 6309 2.265739 GTCCGCTGCATCTCCACA 59.734 61.111 0.00 0.00 0.00 4.17
2788 6795 2.039418 CCAACTGTCGGGATGGAGATA 58.961 52.381 0.49 0.00 34.82 1.98
3005 7015 6.723131 AGTAGTCGAGGAAATTAAACAAGC 57.277 37.500 0.00 0.00 0.00 4.01
3006 7016 6.465084 AGTAGTCGAGGAAATTAAACAAGCT 58.535 36.000 0.00 0.00 0.00 3.74
3007 7017 6.935208 AGTAGTCGAGGAAATTAAACAAGCTT 59.065 34.615 0.00 0.00 0.00 3.74
3008 7018 6.242508 AGTCGAGGAAATTAAACAAGCTTC 57.757 37.500 0.00 0.00 0.00 3.86
3009 7019 5.763204 AGTCGAGGAAATTAAACAAGCTTCA 59.237 36.000 0.00 0.00 0.00 3.02
3010 7020 5.851703 GTCGAGGAAATTAAACAAGCTTCAC 59.148 40.000 0.00 0.00 0.00 3.18
3011 7021 5.048991 TCGAGGAAATTAAACAAGCTTCACC 60.049 40.000 0.00 0.00 0.00 4.02
3012 7022 5.121221 AGGAAATTAAACAAGCTTCACCG 57.879 39.130 0.00 0.00 0.00 4.94
3013 7023 4.022329 AGGAAATTAAACAAGCTTCACCGG 60.022 41.667 0.00 0.00 0.00 5.28
3014 7024 3.934457 AATTAAACAAGCTTCACCGGG 57.066 42.857 6.32 0.00 0.00 5.73
3015 7025 2.642154 TTAAACAAGCTTCACCGGGA 57.358 45.000 6.32 0.00 0.00 5.14
3016 7026 2.871096 TAAACAAGCTTCACCGGGAT 57.129 45.000 6.32 0.00 0.00 3.85
3017 7027 1.995376 AAACAAGCTTCACCGGGATT 58.005 45.000 6.32 0.00 0.00 3.01
3018 7028 1.247567 AACAAGCTTCACCGGGATTG 58.752 50.000 6.32 5.56 35.34 2.67
3019 7029 0.110486 ACAAGCTTCACCGGGATTGT 59.890 50.000 6.32 6.30 37.26 2.71
3020 7030 1.247567 CAAGCTTCACCGGGATTGTT 58.752 50.000 6.32 0.00 0.00 2.83
3021 7031 1.613437 CAAGCTTCACCGGGATTGTTT 59.387 47.619 6.32 0.00 0.00 2.83
3022 7032 1.995376 AGCTTCACCGGGATTGTTTT 58.005 45.000 6.32 0.00 0.00 2.43
3023 7033 3.149005 AGCTTCACCGGGATTGTTTTA 57.851 42.857 6.32 0.00 0.00 1.52
3024 7034 3.492337 AGCTTCACCGGGATTGTTTTAA 58.508 40.909 6.32 0.00 0.00 1.52
3025 7035 3.892588 AGCTTCACCGGGATTGTTTTAAA 59.107 39.130 6.32 0.00 0.00 1.52
3026 7036 4.342665 AGCTTCACCGGGATTGTTTTAAAA 59.657 37.500 6.32 0.00 0.00 1.52
3027 7037 5.051153 GCTTCACCGGGATTGTTTTAAAAA 58.949 37.500 6.32 0.00 0.00 1.94
3047 7057 3.874392 AAAAAGCTTCACTTGTGCAGT 57.126 38.095 0.00 0.00 39.09 4.40
3048 7058 3.874392 AAAAGCTTCACTTGTGCAGTT 57.126 38.095 0.00 0.00 39.09 3.16
3049 7059 3.874392 AAAGCTTCACTTGTGCAGTTT 57.126 38.095 0.00 0.34 39.09 2.66
3050 7060 3.427161 AAGCTTCACTTGTGCAGTTTC 57.573 42.857 0.00 0.00 37.17 2.78
3051 7061 2.648059 AGCTTCACTTGTGCAGTTTCT 58.352 42.857 0.00 0.00 30.92 2.52
3052 7062 3.019564 AGCTTCACTTGTGCAGTTTCTT 58.980 40.909 0.00 0.00 30.92 2.52
3053 7063 3.445096 AGCTTCACTTGTGCAGTTTCTTT 59.555 39.130 0.00 0.00 30.92 2.52
3054 7064 4.082026 AGCTTCACTTGTGCAGTTTCTTTT 60.082 37.500 0.00 0.00 30.92 2.27
3055 7065 4.266265 GCTTCACTTGTGCAGTTTCTTTTC 59.734 41.667 0.00 0.00 30.92 2.29
3056 7066 5.643379 TTCACTTGTGCAGTTTCTTTTCT 57.357 34.783 0.00 0.00 30.92 2.52
3057 7067 5.643379 TCACTTGTGCAGTTTCTTTTCTT 57.357 34.783 0.00 0.00 30.92 2.52
3058 7068 5.640732 TCACTTGTGCAGTTTCTTTTCTTC 58.359 37.500 0.00 0.00 30.92 2.87
3059 7069 5.182950 TCACTTGTGCAGTTTCTTTTCTTCA 59.817 36.000 0.00 0.00 30.92 3.02
3060 7070 5.863397 CACTTGTGCAGTTTCTTTTCTTCAA 59.137 36.000 0.00 0.00 30.92 2.69
3061 7071 6.365789 CACTTGTGCAGTTTCTTTTCTTCAAA 59.634 34.615 0.00 0.00 30.92 2.69
3062 7072 6.366061 ACTTGTGCAGTTTCTTTTCTTCAAAC 59.634 34.615 0.00 0.00 27.32 2.93
3063 7073 6.024552 TGTGCAGTTTCTTTTCTTCAAACT 57.975 33.333 0.00 0.00 40.28 2.66
3068 7078 5.895928 AGTTTCTTTTCTTCAAACTGGAGC 58.104 37.500 0.00 0.00 38.61 4.70
3069 7079 4.918810 TTCTTTTCTTCAAACTGGAGCC 57.081 40.909 0.00 0.00 0.00 4.70
3070 7080 3.222603 TCTTTTCTTCAAACTGGAGCCC 58.777 45.455 0.00 0.00 0.00 5.19
3071 7081 1.604604 TTTCTTCAAACTGGAGCCCG 58.395 50.000 0.00 0.00 0.00 6.13
3072 7082 0.889186 TTCTTCAAACTGGAGCCCGC 60.889 55.000 0.00 0.00 0.00 6.13
3073 7083 2.282180 TTCAAACTGGAGCCCGCC 60.282 61.111 0.00 0.00 0.00 6.13
3074 7084 3.126703 TTCAAACTGGAGCCCGCCA 62.127 57.895 0.00 0.00 36.30 5.69
3075 7085 2.597217 CAAACTGGAGCCCGCCAA 60.597 61.111 0.00 0.00 37.52 4.52
3076 7086 2.197324 AAACTGGAGCCCGCCAAA 59.803 55.556 0.00 0.00 37.52 3.28
3077 7087 1.456705 AAACTGGAGCCCGCCAAAA 60.457 52.632 0.00 0.00 37.52 2.44
3078 7088 1.463553 AAACTGGAGCCCGCCAAAAG 61.464 55.000 0.00 0.00 37.52 2.27
3079 7089 2.034066 CTGGAGCCCGCCAAAAGA 59.966 61.111 0.00 0.00 37.52 2.52
3080 7090 1.379044 CTGGAGCCCGCCAAAAGAT 60.379 57.895 0.00 0.00 37.52 2.40
3081 7091 1.660560 CTGGAGCCCGCCAAAAGATG 61.661 60.000 0.00 0.00 37.52 2.90
3089 7099 3.460868 CCAAAAGATGGGGCCCGC 61.461 66.667 19.83 12.97 46.27 6.13
3090 7100 2.679642 CAAAAGATGGGGCCCGCA 60.680 61.111 19.83 15.87 0.00 5.69
3091 7101 2.679996 AAAAGATGGGGCCCGCAC 60.680 61.111 19.83 11.70 0.00 5.34
3092 7102 3.224007 AAAAGATGGGGCCCGCACT 62.224 57.895 19.83 13.95 0.00 4.40
3093 7103 3.645268 AAAGATGGGGCCCGCACTC 62.645 63.158 19.83 11.91 0.00 3.51
3095 7105 4.864334 GATGGGGCCCGCACTCTG 62.864 72.222 19.83 0.00 0.00 3.35
3106 7116 2.573869 CACTCTGTGCCGGTCGAT 59.426 61.111 1.90 0.00 0.00 3.59
3107 7117 1.517257 CACTCTGTGCCGGTCGATC 60.517 63.158 1.90 0.00 0.00 3.69
3108 7118 1.977009 ACTCTGTGCCGGTCGATCA 60.977 57.895 1.90 0.00 0.00 2.92
3109 7119 1.226802 CTCTGTGCCGGTCGATCAG 60.227 63.158 1.90 5.31 0.00 2.90
3110 7120 2.887568 CTGTGCCGGTCGATCAGC 60.888 66.667 1.90 0.00 0.00 4.26
3111 7121 4.794439 TGTGCCGGTCGATCAGCG 62.794 66.667 1.90 8.99 46.00 5.18
3115 7125 3.592814 CCGGTCGATCAGCGCCTA 61.593 66.667 2.29 0.00 45.03 3.93
3116 7126 2.645567 CGGTCGATCAGCGCCTAT 59.354 61.111 2.29 0.00 39.58 2.57
3117 7127 1.442857 CGGTCGATCAGCGCCTATC 60.443 63.158 2.29 6.65 39.58 2.08
3118 7128 1.857318 CGGTCGATCAGCGCCTATCT 61.857 60.000 2.29 0.00 39.58 1.98
3119 7129 1.166129 GGTCGATCAGCGCCTATCTA 58.834 55.000 2.29 0.00 40.61 1.98
3120 7130 1.135632 GGTCGATCAGCGCCTATCTAC 60.136 57.143 2.29 9.61 40.61 2.59
3121 7131 0.796927 TCGATCAGCGCCTATCTACG 59.203 55.000 2.29 1.42 40.61 3.51
3127 7137 4.834828 CGCCTATCTACGCCGTAC 57.165 61.111 0.00 0.00 0.00 3.67
3141 7151 3.304382 GCCGTACGATTCAGATTGTTG 57.696 47.619 18.76 0.00 32.13 3.33
3142 7152 2.671396 GCCGTACGATTCAGATTGTTGT 59.329 45.455 18.76 0.00 32.13 3.32
3143 7153 3.241995 GCCGTACGATTCAGATTGTTGTC 60.242 47.826 18.76 0.00 32.13 3.18
3144 7154 3.001070 CCGTACGATTCAGATTGTTGTCG 60.001 47.826 18.76 0.00 32.13 4.35
3145 7155 3.849708 CGTACGATTCAGATTGTTGTCGA 59.150 43.478 10.44 0.00 32.13 4.20
3146 7156 4.499399 CGTACGATTCAGATTGTTGTCGAT 59.501 41.667 10.44 0.00 32.13 3.59
3147 7157 4.847365 ACGATTCAGATTGTTGTCGATG 57.153 40.909 0.00 0.00 33.68 3.84
3148 7158 4.245660 ACGATTCAGATTGTTGTCGATGT 58.754 39.130 0.00 0.00 33.68 3.06
3149 7159 4.690748 ACGATTCAGATTGTTGTCGATGTT 59.309 37.500 0.00 0.00 33.68 2.71
3150 7160 5.017612 CGATTCAGATTGTTGTCGATGTTG 58.982 41.667 0.00 0.00 0.00 3.33
3151 7161 4.747540 TTCAGATTGTTGTCGATGTTGG 57.252 40.909 0.00 0.00 0.00 3.77
3152 7162 4.001618 TCAGATTGTTGTCGATGTTGGA 57.998 40.909 0.00 0.00 0.00 3.53
3153 7163 4.384940 TCAGATTGTTGTCGATGTTGGAA 58.615 39.130 0.00 0.00 0.00 3.53
3154 7164 4.213270 TCAGATTGTTGTCGATGTTGGAAC 59.787 41.667 0.00 0.00 0.00 3.62
3155 7165 3.502211 AGATTGTTGTCGATGTTGGAACC 59.498 43.478 0.00 0.00 0.00 3.62
3156 7166 1.600023 TGTTGTCGATGTTGGAACCC 58.400 50.000 0.00 0.00 0.00 4.11
3157 7167 0.879090 GTTGTCGATGTTGGAACCCC 59.121 55.000 0.00 0.00 0.00 4.95
3158 7168 0.604243 TTGTCGATGTTGGAACCCCG 60.604 55.000 0.00 0.00 34.29 5.73
3159 7169 1.294138 GTCGATGTTGGAACCCCGA 59.706 57.895 0.00 0.00 34.29 5.14
3160 7170 1.017701 GTCGATGTTGGAACCCCGAC 61.018 60.000 13.95 13.95 45.41 4.79
3161 7171 1.189524 TCGATGTTGGAACCCCGACT 61.190 55.000 0.00 0.00 45.41 4.18
3162 7172 0.739813 CGATGTTGGAACCCCGACTC 60.740 60.000 0.00 0.00 45.41 3.36
3163 7173 0.392595 GATGTTGGAACCCCGACTCC 60.393 60.000 0.00 0.00 45.41 3.85
3164 7174 0.840722 ATGTTGGAACCCCGACTCCT 60.841 55.000 0.00 0.00 45.41 3.69
3165 7175 0.178926 TGTTGGAACCCCGACTCCTA 60.179 55.000 0.00 0.00 45.41 2.94
3166 7176 1.201424 GTTGGAACCCCGACTCCTAT 58.799 55.000 0.00 0.00 42.50 2.57
3167 7177 1.558294 GTTGGAACCCCGACTCCTATT 59.442 52.381 0.00 0.00 42.50 1.73
3168 7178 1.200519 TGGAACCCCGACTCCTATTG 58.799 55.000 0.00 0.00 34.29 1.90
3169 7179 0.179054 GGAACCCCGACTCCTATTGC 60.179 60.000 0.00 0.00 0.00 3.56
3170 7180 0.539986 GAACCCCGACTCCTATTGCA 59.460 55.000 0.00 0.00 0.00 4.08
3171 7181 0.252197 AACCCCGACTCCTATTGCAC 59.748 55.000 0.00 0.00 0.00 4.57
3172 7182 0.907704 ACCCCGACTCCTATTGCACA 60.908 55.000 0.00 0.00 0.00 4.57
3173 7183 0.462047 CCCCGACTCCTATTGCACAC 60.462 60.000 0.00 0.00 0.00 3.82
3174 7184 0.806102 CCCGACTCCTATTGCACACG 60.806 60.000 0.00 0.00 0.00 4.49
3175 7185 1.421410 CCGACTCCTATTGCACACGC 61.421 60.000 0.00 0.00 39.24 5.34
3184 7194 4.781860 TGCACACGCACAACAAAG 57.218 50.000 0.00 0.00 45.36 2.77
3185 7195 1.879480 TGCACACGCACAACAAAGT 59.121 47.368 0.00 0.00 45.36 2.66
3186 7196 0.179176 TGCACACGCACAACAAAGTC 60.179 50.000 0.00 0.00 45.36 3.01
3187 7197 0.179176 GCACACGCACAACAAAGTCA 60.179 50.000 0.00 0.00 38.36 3.41
3188 7198 1.730772 GCACACGCACAACAAAGTCAA 60.731 47.619 0.00 0.00 38.36 3.18
3189 7199 1.910819 CACACGCACAACAAAGTCAAC 59.089 47.619 0.00 0.00 0.00 3.18
3190 7200 1.179332 CACGCACAACAAAGTCAACG 58.821 50.000 0.00 0.00 0.00 4.10
3191 7201 0.098025 ACGCACAACAAAGTCAACGG 59.902 50.000 0.00 0.00 0.00 4.44
3192 7202 0.375454 CGCACAACAAAGTCAACGGA 59.625 50.000 0.00 0.00 0.00 4.69
3193 7203 1.594518 CGCACAACAAAGTCAACGGAG 60.595 52.381 0.00 0.00 0.00 4.63
3194 7204 1.859998 GCACAACAAAGTCAACGGAGC 60.860 52.381 0.00 0.00 0.00 4.70
3195 7205 1.400142 CACAACAAAGTCAACGGAGCA 59.600 47.619 0.00 0.00 0.00 4.26
3196 7206 1.400494 ACAACAAAGTCAACGGAGCAC 59.600 47.619 0.00 0.00 0.00 4.40
3206 7216 2.551270 CGGAGCACGCAAACAGTC 59.449 61.111 0.00 0.00 34.82 3.51
3207 7217 2.946762 GGAGCACGCAAACAGTCC 59.053 61.111 0.00 0.00 0.00 3.85
3208 7218 2.551270 GAGCACGCAAACAGTCCG 59.449 61.111 0.00 0.00 0.00 4.79
3209 7219 2.954753 GAGCACGCAAACAGTCCGG 61.955 63.158 0.00 0.00 0.00 5.14
3210 7220 2.970324 GCACGCAAACAGTCCGGA 60.970 61.111 0.00 0.00 0.00 5.14
3211 7221 2.935955 CACGCAAACAGTCCGGAC 59.064 61.111 27.67 27.67 0.00 4.79
3212 7222 1.885388 CACGCAAACAGTCCGGACA 60.885 57.895 35.00 0.00 0.00 4.02
3213 7223 1.594293 ACGCAAACAGTCCGGACAG 60.594 57.895 35.00 29.53 0.00 3.51
3214 7224 2.317609 CGCAAACAGTCCGGACAGG 61.318 63.158 35.00 27.32 42.97 4.00
3215 7225 1.227853 GCAAACAGTCCGGACAGGT 60.228 57.895 35.00 27.97 41.99 4.00
3216 7226 0.818040 GCAAACAGTCCGGACAGGTT 60.818 55.000 35.00 31.35 41.99 3.50
3217 7227 1.675552 CAAACAGTCCGGACAGGTTT 58.324 50.000 33.75 33.75 39.75 3.27
3218 7228 1.602377 CAAACAGTCCGGACAGGTTTC 59.398 52.381 35.28 14.35 38.28 2.78
3219 7229 0.834612 AACAGTCCGGACAGGTTTCA 59.165 50.000 35.00 0.00 41.99 2.69
3220 7230 0.106149 ACAGTCCGGACAGGTTTCAC 59.894 55.000 35.00 6.70 41.99 3.18
3221 7231 0.944311 CAGTCCGGACAGGTTTCACG 60.944 60.000 35.00 8.69 41.99 4.35
3222 7232 1.666872 GTCCGGACAGGTTTCACGG 60.667 63.158 29.75 0.00 45.52 4.94
3223 7233 3.047877 CCGGACAGGTTTCACGGC 61.048 66.667 0.00 0.00 37.93 5.68
3224 7234 2.030562 CGGACAGGTTTCACGGCT 59.969 61.111 0.00 0.00 0.00 5.52
3225 7235 2.027625 CGGACAGGTTTCACGGCTC 61.028 63.158 0.00 0.00 0.00 4.70
3226 7236 2.027625 GGACAGGTTTCACGGCTCG 61.028 63.158 0.00 0.00 0.00 5.03
3227 7237 2.665185 ACAGGTTTCACGGCTCGC 60.665 61.111 0.00 0.00 0.00 5.03
3228 7238 2.664851 CAGGTTTCACGGCTCGCA 60.665 61.111 0.00 0.00 0.00 5.10
3229 7239 2.357517 AGGTTTCACGGCTCGCAG 60.358 61.111 0.00 0.00 0.00 5.18
3230 7240 4.090057 GGTTTCACGGCTCGCAGC 62.090 66.667 0.11 0.11 41.46 5.25
3231 7241 3.345808 GTTTCACGGCTCGCAGCA 61.346 61.111 9.78 0.00 44.75 4.41
3232 7242 3.043713 TTTCACGGCTCGCAGCAG 61.044 61.111 9.78 8.22 44.75 4.24
3233 7243 3.513768 TTTCACGGCTCGCAGCAGA 62.514 57.895 13.28 4.82 44.75 4.26
3234 7244 4.724602 TCACGGCTCGCAGCAGAC 62.725 66.667 13.28 0.00 44.75 3.51
3253 7263 4.615815 GGCTCCCGCTCGCATGAT 62.616 66.667 0.00 0.00 36.09 2.45
3254 7264 3.040763 GCTCCCGCTCGCATGATC 61.041 66.667 0.00 0.00 0.00 2.92
3255 7265 2.732468 CTCCCGCTCGCATGATCG 60.732 66.667 0.00 0.00 33.68 3.69
3256 7266 3.490793 CTCCCGCTCGCATGATCGT 62.491 63.158 0.00 0.00 32.04 3.73
3257 7267 3.333189 CCCGCTCGCATGATCGTG 61.333 66.667 10.76 10.76 32.04 4.35
3258 7268 3.333189 CCGCTCGCATGATCGTGG 61.333 66.667 16.59 7.01 32.04 4.94
3259 7269 3.993234 CGCTCGCATGATCGTGGC 61.993 66.667 16.59 10.29 0.00 5.01
3260 7270 2.587194 GCTCGCATGATCGTGGCT 60.587 61.111 16.59 0.00 0.00 4.75
3261 7271 1.300156 GCTCGCATGATCGTGGCTA 60.300 57.895 16.59 1.07 0.00 3.93
3262 7272 0.875908 GCTCGCATGATCGTGGCTAA 60.876 55.000 16.59 0.60 0.00 3.09
3263 7273 1.135046 CTCGCATGATCGTGGCTAAG 58.865 55.000 16.59 5.87 0.00 2.18
3264 7274 0.875908 TCGCATGATCGTGGCTAAGC 60.876 55.000 16.59 0.00 0.00 3.09
3274 7284 3.341835 GGCTAAGCCTCGCATCGC 61.342 66.667 0.00 0.00 46.69 4.58
3275 7285 3.341835 GCTAAGCCTCGCATCGCC 61.342 66.667 0.00 0.00 0.00 5.54
3276 7286 2.106938 CTAAGCCTCGCATCGCCA 59.893 61.111 0.00 0.00 0.00 5.69
3277 7287 1.953138 CTAAGCCTCGCATCGCCAG 60.953 63.158 0.00 0.00 0.00 4.85
3286 7296 3.511595 CATCGCCAGCCGCAACAT 61.512 61.111 0.00 0.00 37.30 2.71
3287 7297 3.511595 ATCGCCAGCCGCAACATG 61.512 61.111 0.00 0.00 37.30 3.21
3290 7300 4.424566 GCCAGCCGCAACATGGTG 62.425 66.667 6.32 6.32 36.43 4.17
3291 7301 4.424566 CCAGCCGCAACATGGTGC 62.425 66.667 26.17 26.17 41.32 5.01
3292 7302 3.672447 CAGCCGCAACATGGTGCA 61.672 61.111 33.49 0.00 45.19 4.57
3293 7303 3.673484 AGCCGCAACATGGTGCAC 61.673 61.111 33.49 24.55 45.19 4.57
3294 7304 3.673484 GCCGCAACATGGTGCACT 61.673 61.111 33.49 0.00 45.19 4.40
3295 7305 2.562912 CCGCAACATGGTGCACTC 59.437 61.111 33.49 6.27 45.19 3.51
3296 7306 2.174107 CGCAACATGGTGCACTCG 59.826 61.111 33.49 14.92 45.19 4.18
3297 7307 2.126734 GCAACATGGTGCACTCGC 60.127 61.111 30.55 1.05 44.29 5.03
3298 7308 2.562912 CAACATGGTGCACTCGCC 59.437 61.111 17.98 0.00 43.16 5.54
3299 7309 3.049674 AACATGGTGCACTCGCCG 61.050 61.111 17.98 3.88 45.79 6.46
3300 7310 3.825160 AACATGGTGCACTCGCCGT 62.825 57.895 17.98 4.53 45.79 5.68
3301 7311 3.490759 CATGGTGCACTCGCCGTC 61.491 66.667 17.98 0.00 45.79 4.79
3302 7312 4.002506 ATGGTGCACTCGCCGTCA 62.003 61.111 17.98 4.35 45.79 4.35
3303 7313 4.961511 TGGTGCACTCGCCGTCAC 62.962 66.667 17.98 0.00 45.79 3.67
3304 7314 4.961511 GGTGCACTCGCCGTCACA 62.962 66.667 17.98 0.00 37.32 3.58
3305 7315 3.406361 GTGCACTCGCCGTCACAG 61.406 66.667 10.32 0.00 37.32 3.66
3308 7318 3.406361 CACTCGCCGTCACAGCAC 61.406 66.667 0.00 0.00 0.00 4.40
3338 7348 4.295407 TCCCCGGGACAGATCATC 57.705 61.111 26.32 0.00 0.00 2.92
3339 7349 1.459539 TCCCCGGGACAGATCATCC 60.460 63.158 26.32 7.38 35.28 3.51
3340 7350 2.737180 CCCGGGACAGATCATCCG 59.263 66.667 18.48 8.86 41.90 4.18
3341 7351 2.134287 CCCGGGACAGATCATCCGT 61.134 63.158 18.48 0.00 40.78 4.69
3342 7352 1.686325 CCCGGGACAGATCATCCGTT 61.686 60.000 18.48 0.00 40.78 4.44
3343 7353 0.530650 CCGGGACAGATCATCCGTTG 60.531 60.000 9.32 3.35 40.78 4.10
3344 7354 0.530650 CGGGACAGATCATCCGTTGG 60.531 60.000 9.32 0.00 37.08 3.77
3345 7355 0.815615 GGGACAGATCATCCGTTGGC 60.816 60.000 9.32 0.00 37.08 4.52
3346 7356 0.179000 GGACAGATCATCCGTTGGCT 59.821 55.000 0.00 0.00 0.00 4.75
3347 7357 1.293924 GACAGATCATCCGTTGGCTG 58.706 55.000 0.00 0.00 35.55 4.85
3348 7358 0.745845 ACAGATCATCCGTTGGCTGC 60.746 55.000 0.00 0.00 33.89 5.25
3349 7359 0.745486 CAGATCATCCGTTGGCTGCA 60.745 55.000 0.50 0.00 0.00 4.41
3350 7360 0.182061 AGATCATCCGTTGGCTGCAT 59.818 50.000 0.50 0.00 0.00 3.96
3351 7361 0.590195 GATCATCCGTTGGCTGCATC 59.410 55.000 0.50 0.00 0.00 3.91
3352 7362 1.162181 ATCATCCGTTGGCTGCATCG 61.162 55.000 0.50 2.70 0.00 3.84
3353 7363 1.815003 CATCCGTTGGCTGCATCGA 60.815 57.895 0.50 0.00 0.00 3.59
3354 7364 1.522355 ATCCGTTGGCTGCATCGAG 60.522 57.895 0.50 0.00 0.00 4.04
3355 7365 2.244117 ATCCGTTGGCTGCATCGAGT 62.244 55.000 0.50 0.00 0.00 4.18
3356 7366 2.743752 CCGTTGGCTGCATCGAGTG 61.744 63.158 0.50 0.00 0.00 3.51
3365 7375 3.474806 CATCGAGTGCAACCGTCC 58.525 61.111 8.54 0.00 37.80 4.79
3366 7376 2.126071 ATCGAGTGCAACCGTCCG 60.126 61.111 8.54 0.00 37.80 4.79
3385 7395 4.379243 CGGGTTGCTGTCGAGGCT 62.379 66.667 10.91 0.00 0.00 4.58
3386 7396 2.435059 GGGTTGCTGTCGAGGCTC 60.435 66.667 3.87 3.87 0.00 4.70
3387 7397 2.811317 GGTTGCTGTCGAGGCTCG 60.811 66.667 30.10 30.10 42.10 5.03
3388 7398 2.049063 GTTGCTGTCGAGGCTCGT 60.049 61.111 33.31 0.00 41.35 4.18
3389 7399 2.089349 GTTGCTGTCGAGGCTCGTC 61.089 63.158 33.31 28.47 41.35 4.20
3390 7400 3.610791 TTGCTGTCGAGGCTCGTCG 62.611 63.158 33.31 23.54 41.35 5.12
3392 7402 4.103103 CTGTCGAGGCTCGTCGCA 62.103 66.667 33.31 26.65 41.35 5.10
3393 7403 3.402691 CTGTCGAGGCTCGTCGCAT 62.403 63.158 33.31 0.00 41.35 4.73
3394 7404 2.951745 GTCGAGGCTCGTCGCATG 60.952 66.667 33.31 6.88 41.35 4.06
3395 7405 4.193334 TCGAGGCTCGTCGCATGG 62.193 66.667 33.31 6.12 41.35 3.66
3397 7407 4.521062 GAGGCTCGTCGCATGGCT 62.521 66.667 0.00 8.09 41.67 4.75
3398 7408 4.827087 AGGCTCGTCGCATGGCTG 62.827 66.667 0.00 0.00 41.67 4.85
3419 7429 4.828341 GCGCGCAACATCGTCGTC 62.828 66.667 29.10 0.00 33.80 4.20
3420 7430 3.172575 CGCGCAACATCGTCGTCT 61.173 61.111 8.75 0.00 0.00 4.18
3421 7431 2.716828 CGCGCAACATCGTCGTCTT 61.717 57.895 8.75 0.00 0.00 3.01
3422 7432 1.491563 GCGCAACATCGTCGTCTTT 59.508 52.632 0.30 0.00 0.00 2.52
3423 7433 0.516524 GCGCAACATCGTCGTCTTTC 60.517 55.000 0.30 0.00 0.00 2.62
3424 7434 0.781787 CGCAACATCGTCGTCTTTCA 59.218 50.000 0.00 0.00 0.00 2.69
3425 7435 1.460267 CGCAACATCGTCGTCTTTCAC 60.460 52.381 0.00 0.00 0.00 3.18
3426 7436 1.792949 GCAACATCGTCGTCTTTCACT 59.207 47.619 0.00 0.00 0.00 3.41
3427 7437 2.159960 GCAACATCGTCGTCTTTCACTC 60.160 50.000 0.00 0.00 0.00 3.51
3428 7438 3.309388 CAACATCGTCGTCTTTCACTCT 58.691 45.455 0.00 0.00 0.00 3.24
3429 7439 3.644884 ACATCGTCGTCTTTCACTCTT 57.355 42.857 0.00 0.00 0.00 2.85
3430 7440 3.978687 ACATCGTCGTCTTTCACTCTTT 58.021 40.909 0.00 0.00 0.00 2.52
3431 7441 3.982058 ACATCGTCGTCTTTCACTCTTTC 59.018 43.478 0.00 0.00 0.00 2.62
3432 7442 3.984508 TCGTCGTCTTTCACTCTTTCT 57.015 42.857 0.00 0.00 0.00 2.52
3433 7443 4.303086 TCGTCGTCTTTCACTCTTTCTT 57.697 40.909 0.00 0.00 0.00 2.52
3434 7444 4.042398 TCGTCGTCTTTCACTCTTTCTTG 58.958 43.478 0.00 0.00 0.00 3.02
3435 7445 3.182572 CGTCGTCTTTCACTCTTTCTTGG 59.817 47.826 0.00 0.00 0.00 3.61
3436 7446 3.495001 GTCGTCTTTCACTCTTTCTTGGG 59.505 47.826 0.00 0.00 0.00 4.12
3437 7447 3.134081 TCGTCTTTCACTCTTTCTTGGGT 59.866 43.478 0.00 0.00 0.00 4.51
3438 7448 3.495001 CGTCTTTCACTCTTTCTTGGGTC 59.505 47.826 0.00 0.00 0.00 4.46
3439 7449 4.451900 GTCTTTCACTCTTTCTTGGGTCA 58.548 43.478 0.00 0.00 0.00 4.02
3440 7450 4.273724 GTCTTTCACTCTTTCTTGGGTCAC 59.726 45.833 0.00 0.00 0.00 3.67
3441 7451 2.930826 TCACTCTTTCTTGGGTCACC 57.069 50.000 0.00 0.00 37.24 4.02
3455 7465 5.255397 TGGGTCACCATTTTCTCATTACT 57.745 39.130 0.00 0.00 43.37 2.24
3456 7466 5.009631 TGGGTCACCATTTTCTCATTACTG 58.990 41.667 0.00 0.00 43.37 2.74
3457 7467 5.010282 GGGTCACCATTTTCTCATTACTGT 58.990 41.667 0.00 0.00 36.50 3.55
3458 7468 5.123979 GGGTCACCATTTTCTCATTACTGTC 59.876 44.000 0.00 0.00 36.50 3.51
3459 7469 5.163854 GGTCACCATTTTCTCATTACTGTCG 60.164 44.000 0.00 0.00 0.00 4.35
3460 7470 5.408604 GTCACCATTTTCTCATTACTGTCGT 59.591 40.000 0.00 0.00 0.00 4.34
3461 7471 6.588756 GTCACCATTTTCTCATTACTGTCGTA 59.411 38.462 0.00 0.00 0.00 3.43
3462 7472 6.811665 TCACCATTTTCTCATTACTGTCGTAG 59.188 38.462 0.00 0.00 0.00 3.51
3463 7473 6.811665 CACCATTTTCTCATTACTGTCGTAGA 59.188 38.462 0.00 0.00 0.00 2.59
3464 7474 7.009631 CACCATTTTCTCATTACTGTCGTAGAG 59.990 40.741 0.00 0.00 36.95 2.43
3465 7475 6.019479 CCATTTTCTCATTACTGTCGTAGAGC 60.019 42.308 0.00 0.00 36.95 4.09
3466 7476 4.634184 TTCTCATTACTGTCGTAGAGCC 57.366 45.455 0.00 0.00 36.95 4.70
3467 7477 3.887352 TCTCATTACTGTCGTAGAGCCT 58.113 45.455 0.00 0.00 36.95 4.58
3468 7478 4.270834 TCTCATTACTGTCGTAGAGCCTT 58.729 43.478 0.00 0.00 36.95 4.35
3469 7479 4.705507 TCTCATTACTGTCGTAGAGCCTTT 59.294 41.667 0.00 0.00 36.95 3.11
3470 7480 5.185249 TCTCATTACTGTCGTAGAGCCTTTT 59.815 40.000 0.00 0.00 36.95 2.27
3471 7481 5.408356 TCATTACTGTCGTAGAGCCTTTTC 58.592 41.667 0.00 0.00 36.95 2.29
3472 7482 4.859304 TTACTGTCGTAGAGCCTTTTCA 57.141 40.909 0.00 0.00 36.95 2.69
3473 7483 3.963428 ACTGTCGTAGAGCCTTTTCAT 57.037 42.857 0.00 0.00 36.95 2.57
3474 7484 3.851098 ACTGTCGTAGAGCCTTTTCATC 58.149 45.455 0.00 0.00 36.95 2.92
3475 7485 2.854777 CTGTCGTAGAGCCTTTTCATCG 59.145 50.000 0.00 0.00 36.95 3.84
3476 7486 2.230508 TGTCGTAGAGCCTTTTCATCGT 59.769 45.455 0.00 0.00 36.95 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
464 474 1.867919 CTCGTCAGGCTGTCTCCGTT 61.868 60.000 15.27 0.00 0.00 4.44
481 491 1.442857 CAGCAGTGACGACGACCTC 60.443 63.158 0.00 0.00 0.00 3.85
732 742 2.122167 GTGTCGAGGGAGAGGCGAT 61.122 63.158 0.00 0.00 36.37 4.58
753 763 4.063967 CGGCAGTGTCGTAGCCCA 62.064 66.667 9.46 0.00 45.56 5.36
893 906 0.675522 CGGACAAAAGCCCCACGTAT 60.676 55.000 0.00 0.00 0.00 3.06
947 960 0.042708 CGAATTCTGAATCGCGCAGG 60.043 55.000 8.75 0.00 34.20 4.85
971 984 3.686016 TGCACACTTTCCCCTATCTTTC 58.314 45.455 0.00 0.00 0.00 2.62
1006 1019 1.153469 GCTTCTCGCCTTCCTCCAG 60.153 63.158 0.00 0.00 0.00 3.86
1114 1127 0.460722 TCGGTGTTGACGAAGGTGAA 59.539 50.000 0.00 0.00 37.42 3.18
1279 1292 2.046217 GGGGAGAAAGGTGGTCGC 60.046 66.667 0.00 0.00 0.00 5.19
1280 1293 2.221299 TGGGGGAGAAAGGTGGTCG 61.221 63.158 0.00 0.00 0.00 4.79
1974 5901 0.322648 AAAAATGAAGCAGCAGCCCC 59.677 50.000 0.00 0.00 43.56 5.80
2229 6203 3.303135 TTGAGCAGGACGGCGTCT 61.303 61.111 35.42 19.06 39.27 4.18
2293 6267 2.363975 TGTACATGGGCGGGAGGAC 61.364 63.158 0.00 0.00 0.00 3.85
2335 6309 4.309950 GGGGACGACGTTGCTGGT 62.310 66.667 0.13 0.00 0.00 4.00
2726 6707 2.281692 AGCACAGCATCGGCACAA 60.282 55.556 0.00 0.00 44.61 3.33
2727 6708 3.051479 CAGCACAGCATCGGCACA 61.051 61.111 0.00 0.00 44.61 4.57
2948 6955 3.017232 CGAGGAGCACACTACGAAC 57.983 57.895 0.00 0.00 0.00 3.95
2998 7008 1.613437 CAATCCCGGTGAAGCTTGTTT 59.387 47.619 2.10 0.00 0.00 2.83
3001 7011 1.247567 AACAATCCCGGTGAAGCTTG 58.752 50.000 2.10 2.27 0.00 4.01
3004 7014 3.926821 TTAAAACAATCCCGGTGAAGC 57.073 42.857 0.00 0.00 0.00 3.86
3027 7037 3.874392 ACTGCACAAGTGAAGCTTTTT 57.126 38.095 8.12 0.00 39.96 1.94
3028 7038 3.874392 AACTGCACAAGTGAAGCTTTT 57.126 38.095 8.12 0.00 39.96 2.27
3029 7039 3.445096 AGAAACTGCACAAGTGAAGCTTT 59.555 39.130 8.12 7.96 39.96 3.51
3030 7040 3.019564 AGAAACTGCACAAGTGAAGCTT 58.980 40.909 8.12 0.00 39.96 3.74
3031 7041 2.648059 AGAAACTGCACAAGTGAAGCT 58.352 42.857 8.12 0.00 39.96 3.74
3032 7042 3.427161 AAGAAACTGCACAAGTGAAGC 57.573 42.857 8.12 0.00 39.96 3.86
3033 7043 5.644644 AGAAAAGAAACTGCACAAGTGAAG 58.355 37.500 6.65 6.65 42.09 3.02
3034 7044 5.643379 AGAAAAGAAACTGCACAAGTGAA 57.357 34.783 4.04 0.00 39.81 3.18
3035 7045 5.182950 TGAAGAAAAGAAACTGCACAAGTGA 59.817 36.000 4.04 0.00 39.81 3.41
3036 7046 5.401550 TGAAGAAAAGAAACTGCACAAGTG 58.598 37.500 0.00 0.00 39.81 3.16
3037 7047 5.643379 TGAAGAAAAGAAACTGCACAAGT 57.357 34.783 0.00 0.00 42.60 3.16
3038 7048 6.587608 AGTTTGAAGAAAAGAAACTGCACAAG 59.412 34.615 0.00 0.00 38.26 3.16
3039 7049 6.365789 CAGTTTGAAGAAAAGAAACTGCACAA 59.634 34.615 10.06 0.00 45.62 3.33
3040 7050 5.863397 CAGTTTGAAGAAAAGAAACTGCACA 59.137 36.000 10.06 0.00 45.62 4.57
3041 7051 6.323197 CAGTTTGAAGAAAAGAAACTGCAC 57.677 37.500 10.06 0.00 45.62 4.57
3045 7055 5.163509 GGCTCCAGTTTGAAGAAAAGAAACT 60.164 40.000 0.00 0.00 39.88 2.66
3046 7056 5.043903 GGCTCCAGTTTGAAGAAAAGAAAC 58.956 41.667 0.00 0.00 0.00 2.78
3047 7057 4.099419 GGGCTCCAGTTTGAAGAAAAGAAA 59.901 41.667 0.00 0.00 0.00 2.52
3048 7058 3.636764 GGGCTCCAGTTTGAAGAAAAGAA 59.363 43.478 0.00 0.00 0.00 2.52
3049 7059 3.222603 GGGCTCCAGTTTGAAGAAAAGA 58.777 45.455 0.00 0.00 0.00 2.52
3050 7060 2.030805 CGGGCTCCAGTTTGAAGAAAAG 60.031 50.000 0.00 0.00 0.00 2.27
3051 7061 1.953686 CGGGCTCCAGTTTGAAGAAAA 59.046 47.619 0.00 0.00 0.00 2.29
3052 7062 1.604604 CGGGCTCCAGTTTGAAGAAA 58.395 50.000 0.00 0.00 0.00 2.52
3053 7063 0.889186 GCGGGCTCCAGTTTGAAGAA 60.889 55.000 0.00 0.00 0.00 2.52
3054 7064 1.302511 GCGGGCTCCAGTTTGAAGA 60.303 57.895 0.00 0.00 0.00 2.87
3055 7065 2.335712 GGCGGGCTCCAGTTTGAAG 61.336 63.158 0.00 0.00 0.00 3.02
3056 7066 2.282180 GGCGGGCTCCAGTTTGAA 60.282 61.111 0.00 0.00 0.00 2.69
3057 7067 2.632602 TTTGGCGGGCTCCAGTTTGA 62.633 55.000 2.38 0.00 37.44 2.69
3058 7068 1.743321 TTTTGGCGGGCTCCAGTTTG 61.743 55.000 2.38 0.00 37.44 2.93
3059 7069 1.456705 TTTTGGCGGGCTCCAGTTT 60.457 52.632 2.38 0.00 37.44 2.66
3060 7070 1.903404 CTTTTGGCGGGCTCCAGTT 60.903 57.895 2.38 0.00 37.44 3.16
3061 7071 2.142292 ATCTTTTGGCGGGCTCCAGT 62.142 55.000 2.38 0.00 37.44 4.00
3062 7072 1.379044 ATCTTTTGGCGGGCTCCAG 60.379 57.895 2.38 0.00 37.44 3.86
3063 7073 1.678635 CATCTTTTGGCGGGCTCCA 60.679 57.895 2.38 0.00 0.00 3.86
3064 7074 2.418083 CCATCTTTTGGCGGGCTCC 61.418 63.158 2.38 0.00 39.09 4.70
3065 7075 2.418083 CCCATCTTTTGGCGGGCTC 61.418 63.158 2.38 0.00 44.97 4.70
3066 7076 2.362889 CCCATCTTTTGGCGGGCT 60.363 61.111 2.38 0.00 44.97 5.19
3067 7077 3.460868 CCCCATCTTTTGGCGGGC 61.461 66.667 0.00 0.00 44.97 6.13
3068 7078 3.460868 GCCCCATCTTTTGGCGGG 61.461 66.667 0.00 0.00 44.97 6.13
3069 7079 3.460868 GGCCCCATCTTTTGGCGG 61.461 66.667 0.00 0.00 46.31 6.13
3070 7080 3.460868 GGGCCCCATCTTTTGGCG 61.461 66.667 12.23 0.00 46.31 5.69
3071 7081 3.460868 CGGGCCCCATCTTTTGGC 61.461 66.667 18.66 0.00 44.97 4.52
3072 7082 3.460868 GCGGGCCCCATCTTTTGG 61.461 66.667 18.66 0.00 46.00 3.28
3073 7083 2.679642 TGCGGGCCCCATCTTTTG 60.680 61.111 18.66 0.00 0.00 2.44
3074 7084 2.679996 GTGCGGGCCCCATCTTTT 60.680 61.111 18.66 0.00 0.00 2.27
3075 7085 3.645268 GAGTGCGGGCCCCATCTTT 62.645 63.158 18.66 0.00 0.00 2.52
3076 7086 4.115199 GAGTGCGGGCCCCATCTT 62.115 66.667 18.66 5.47 0.00 2.40
3078 7088 4.864334 CAGAGTGCGGGCCCCATC 62.864 72.222 18.66 9.21 0.00 3.51
3089 7099 1.517257 GATCGACCGGCACAGAGTG 60.517 63.158 0.00 0.00 36.51 3.51
3090 7100 1.938657 CTGATCGACCGGCACAGAGT 61.939 60.000 0.00 0.00 0.00 3.24
3091 7101 1.226802 CTGATCGACCGGCACAGAG 60.227 63.158 0.00 0.00 0.00 3.35
3092 7102 2.885113 CTGATCGACCGGCACAGA 59.115 61.111 0.00 0.00 0.00 3.41
3093 7103 2.887568 GCTGATCGACCGGCACAG 60.888 66.667 5.46 5.47 38.29 3.66
3094 7104 4.794439 CGCTGATCGACCGGCACA 62.794 66.667 12.08 0.00 41.67 4.57
3102 7112 0.796927 CGTAGATAGGCGCTGATCGA 59.203 55.000 7.64 4.03 41.67 3.59
3103 7113 3.298126 CGTAGATAGGCGCTGATCG 57.702 57.895 7.64 0.00 42.12 3.69
3111 7121 0.801251 ATCGTACGGCGTAGATAGGC 59.199 55.000 21.64 6.51 42.13 3.93
3112 7122 2.481568 TGAATCGTACGGCGTAGATAGG 59.518 50.000 21.64 6.96 42.13 2.57
3113 7123 3.431233 TCTGAATCGTACGGCGTAGATAG 59.569 47.826 21.64 17.49 42.13 2.08
3114 7124 3.392882 TCTGAATCGTACGGCGTAGATA 58.607 45.455 21.64 9.16 42.13 1.98
3115 7125 2.216046 TCTGAATCGTACGGCGTAGAT 58.784 47.619 21.64 20.18 42.13 1.98
3116 7126 1.655484 TCTGAATCGTACGGCGTAGA 58.345 50.000 21.64 18.90 42.13 2.59
3117 7127 2.682952 ATCTGAATCGTACGGCGTAG 57.317 50.000 21.64 14.29 42.13 3.51
3118 7128 2.097954 ACAATCTGAATCGTACGGCGTA 59.902 45.455 16.97 16.97 42.13 4.42
3119 7129 1.135199 ACAATCTGAATCGTACGGCGT 60.135 47.619 19.64 19.64 42.13 5.68
3120 7130 1.556564 ACAATCTGAATCGTACGGCG 58.443 50.000 16.52 4.80 43.01 6.46
3121 7131 2.671396 ACAACAATCTGAATCGTACGGC 59.329 45.455 16.52 6.10 0.00 5.68
3122 7132 3.001070 CGACAACAATCTGAATCGTACGG 60.001 47.826 16.52 0.00 0.00 4.02
3123 7133 3.849708 TCGACAACAATCTGAATCGTACG 59.150 43.478 9.53 9.53 0.00 3.67
3124 7134 5.288712 ACATCGACAACAATCTGAATCGTAC 59.711 40.000 0.00 0.00 0.00 3.67
3125 7135 5.407502 ACATCGACAACAATCTGAATCGTA 58.592 37.500 0.00 0.00 0.00 3.43
3126 7136 4.245660 ACATCGACAACAATCTGAATCGT 58.754 39.130 0.00 0.00 0.00 3.73
3127 7137 4.847365 ACATCGACAACAATCTGAATCG 57.153 40.909 0.00 0.00 0.00 3.34
3128 7138 5.122239 TCCAACATCGACAACAATCTGAATC 59.878 40.000 0.00 0.00 0.00 2.52
3129 7139 5.003160 TCCAACATCGACAACAATCTGAAT 58.997 37.500 0.00 0.00 0.00 2.57
3130 7140 4.384940 TCCAACATCGACAACAATCTGAA 58.615 39.130 0.00 0.00 0.00 3.02
3131 7141 4.001618 TCCAACATCGACAACAATCTGA 57.998 40.909 0.00 0.00 0.00 3.27
3132 7142 4.466828 GTTCCAACATCGACAACAATCTG 58.533 43.478 0.00 0.00 0.00 2.90
3133 7143 3.502211 GGTTCCAACATCGACAACAATCT 59.498 43.478 0.00 0.00 0.00 2.40
3134 7144 3.365969 GGGTTCCAACATCGACAACAATC 60.366 47.826 0.00 0.00 0.00 2.67
3135 7145 2.556622 GGGTTCCAACATCGACAACAAT 59.443 45.455 0.00 0.00 0.00 2.71
3136 7146 1.950909 GGGTTCCAACATCGACAACAA 59.049 47.619 0.00 0.00 0.00 2.83
3137 7147 1.600023 GGGTTCCAACATCGACAACA 58.400 50.000 0.00 0.00 0.00 3.33
3138 7148 0.879090 GGGGTTCCAACATCGACAAC 59.121 55.000 0.00 0.00 0.00 3.32
3139 7149 0.604243 CGGGGTTCCAACATCGACAA 60.604 55.000 0.00 0.00 0.00 3.18
3140 7150 1.004320 CGGGGTTCCAACATCGACA 60.004 57.895 0.00 0.00 0.00 4.35
3141 7151 1.017701 GTCGGGGTTCCAACATCGAC 61.018 60.000 15.78 15.78 43.09 4.20
3142 7152 1.189524 AGTCGGGGTTCCAACATCGA 61.190 55.000 0.00 0.00 34.36 3.59
3143 7153 0.739813 GAGTCGGGGTTCCAACATCG 60.740 60.000 0.00 0.00 0.00 3.84
3144 7154 0.392595 GGAGTCGGGGTTCCAACATC 60.393 60.000 0.00 0.00 33.55 3.06
3145 7155 0.840722 AGGAGTCGGGGTTCCAACAT 60.841 55.000 0.00 0.00 35.88 2.71
3146 7156 0.178926 TAGGAGTCGGGGTTCCAACA 60.179 55.000 0.00 0.00 35.88 3.33
3147 7157 1.201424 ATAGGAGTCGGGGTTCCAAC 58.799 55.000 0.00 0.00 35.88 3.77
3148 7158 1.557832 CAATAGGAGTCGGGGTTCCAA 59.442 52.381 0.00 0.00 35.88 3.53
3149 7159 1.200519 CAATAGGAGTCGGGGTTCCA 58.799 55.000 0.00 0.00 35.88 3.53
3150 7160 0.179054 GCAATAGGAGTCGGGGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
3151 7161 0.539986 TGCAATAGGAGTCGGGGTTC 59.460 55.000 0.00 0.00 0.00 3.62
3152 7162 0.252197 GTGCAATAGGAGTCGGGGTT 59.748 55.000 0.00 0.00 0.00 4.11
3153 7163 0.907704 TGTGCAATAGGAGTCGGGGT 60.908 55.000 0.00 0.00 0.00 4.95
3154 7164 0.462047 GTGTGCAATAGGAGTCGGGG 60.462 60.000 0.00 0.00 0.00 5.73
3155 7165 0.806102 CGTGTGCAATAGGAGTCGGG 60.806 60.000 0.00 0.00 0.00 5.14
3156 7166 1.421410 GCGTGTGCAATAGGAGTCGG 61.421 60.000 0.00 0.00 42.15 4.79
3157 7167 1.999051 GCGTGTGCAATAGGAGTCG 59.001 57.895 0.00 0.00 42.15 4.18
3168 7178 0.179176 TGACTTTGTTGTGCGTGTGC 60.179 50.000 0.00 0.00 43.20 4.57
3169 7179 1.910819 GTTGACTTTGTTGTGCGTGTG 59.089 47.619 0.00 0.00 0.00 3.82
3170 7180 1.465020 CGTTGACTTTGTTGTGCGTGT 60.465 47.619 0.00 0.00 0.00 4.49
3171 7181 1.179332 CGTTGACTTTGTTGTGCGTG 58.821 50.000 0.00 0.00 0.00 5.34
3172 7182 0.098025 CCGTTGACTTTGTTGTGCGT 59.902 50.000 0.00 0.00 0.00 5.24
3173 7183 0.375454 TCCGTTGACTTTGTTGTGCG 59.625 50.000 0.00 0.00 0.00 5.34
3174 7184 1.859998 GCTCCGTTGACTTTGTTGTGC 60.860 52.381 0.00 0.00 0.00 4.57
3175 7185 1.400142 TGCTCCGTTGACTTTGTTGTG 59.600 47.619 0.00 0.00 0.00 3.33
3176 7186 1.400494 GTGCTCCGTTGACTTTGTTGT 59.600 47.619 0.00 0.00 0.00 3.32
3177 7187 1.594518 CGTGCTCCGTTGACTTTGTTG 60.595 52.381 0.00 0.00 0.00 3.33
3178 7188 0.655733 CGTGCTCCGTTGACTTTGTT 59.344 50.000 0.00 0.00 0.00 2.83
3179 7189 1.772063 GCGTGCTCCGTTGACTTTGT 61.772 55.000 0.00 0.00 39.32 2.83
3180 7190 1.082756 GCGTGCTCCGTTGACTTTG 60.083 57.895 0.00 0.00 39.32 2.77
3181 7191 1.092921 TTGCGTGCTCCGTTGACTTT 61.093 50.000 0.00 0.00 39.32 2.66
3182 7192 1.092921 TTTGCGTGCTCCGTTGACTT 61.093 50.000 0.00 0.00 39.32 3.01
3183 7193 1.522806 TTTGCGTGCTCCGTTGACT 60.523 52.632 0.00 0.00 39.32 3.41
3184 7194 1.368850 GTTTGCGTGCTCCGTTGAC 60.369 57.895 0.00 0.00 39.32 3.18
3185 7195 1.771073 CTGTTTGCGTGCTCCGTTGA 61.771 55.000 0.00 0.00 39.32 3.18
3186 7196 1.369209 CTGTTTGCGTGCTCCGTTG 60.369 57.895 0.00 0.00 39.32 4.10
3187 7197 1.772063 GACTGTTTGCGTGCTCCGTT 61.772 55.000 0.00 0.00 39.32 4.44
3188 7198 2.203015 ACTGTTTGCGTGCTCCGT 60.203 55.556 0.00 0.00 39.32 4.69
3189 7199 2.551270 GACTGTTTGCGTGCTCCG 59.449 61.111 0.00 0.00 40.40 4.63
3190 7200 2.946762 GGACTGTTTGCGTGCTCC 59.053 61.111 0.00 0.00 0.00 4.70
3191 7201 2.551270 CGGACTGTTTGCGTGCTC 59.449 61.111 0.00 0.00 33.63 4.26
3192 7202 2.972505 CCGGACTGTTTGCGTGCT 60.973 61.111 0.00 0.00 37.34 4.40
3193 7203 2.970324 TCCGGACTGTTTGCGTGC 60.970 61.111 0.00 0.00 37.34 5.34
3194 7204 1.831389 CTGTCCGGACTGTTTGCGTG 61.831 60.000 33.39 9.74 37.34 5.34
3195 7205 1.594293 CTGTCCGGACTGTTTGCGT 60.594 57.895 33.39 0.00 37.34 5.24
3196 7206 2.317609 CCTGTCCGGACTGTTTGCG 61.318 63.158 33.39 16.57 39.13 4.85
3197 7207 0.818040 AACCTGTCCGGACTGTTTGC 60.818 55.000 33.39 7.62 36.31 3.68
3198 7208 1.602377 GAAACCTGTCCGGACTGTTTG 59.398 52.381 37.61 26.56 37.22 2.93
3199 7209 1.210967 TGAAACCTGTCCGGACTGTTT 59.789 47.619 35.23 35.23 38.60 2.83
3200 7210 0.834612 TGAAACCTGTCCGGACTGTT 59.165 50.000 33.39 29.72 36.31 3.16
3201 7211 0.106149 GTGAAACCTGTCCGGACTGT 59.894 55.000 33.39 26.29 36.31 3.55
3202 7212 0.944311 CGTGAAACCTGTCCGGACTG 60.944 60.000 33.39 31.13 36.31 3.51
3203 7213 1.366366 CGTGAAACCTGTCCGGACT 59.634 57.895 33.39 14.76 36.31 3.85
3204 7214 1.666872 CCGTGAAACCTGTCCGGAC 60.667 63.158 28.17 28.17 41.08 4.79
3205 7215 2.738480 CCGTGAAACCTGTCCGGA 59.262 61.111 0.00 0.00 41.08 5.14
3206 7216 3.047877 GCCGTGAAACCTGTCCGG 61.048 66.667 0.00 0.00 41.50 5.14
3207 7217 2.027625 GAGCCGTGAAACCTGTCCG 61.028 63.158 0.00 0.00 0.00 4.79
3208 7218 2.027625 CGAGCCGTGAAACCTGTCC 61.028 63.158 0.00 0.00 0.00 4.02
3209 7219 2.668280 GCGAGCCGTGAAACCTGTC 61.668 63.158 0.00 0.00 0.00 3.51
3210 7220 2.665185 GCGAGCCGTGAAACCTGT 60.665 61.111 0.00 0.00 0.00 4.00
3211 7221 2.664851 TGCGAGCCGTGAAACCTG 60.665 61.111 0.00 0.00 0.00 4.00
3212 7222 2.357517 CTGCGAGCCGTGAAACCT 60.358 61.111 0.00 0.00 0.00 3.50
3213 7223 4.090057 GCTGCGAGCCGTGAAACC 62.090 66.667 0.00 0.00 34.48 3.27
3214 7224 3.300667 CTGCTGCGAGCCGTGAAAC 62.301 63.158 5.82 0.00 41.51 2.78
3215 7225 3.043713 CTGCTGCGAGCCGTGAAA 61.044 61.111 5.82 0.00 41.51 2.69
3216 7226 3.989787 TCTGCTGCGAGCCGTGAA 61.990 61.111 5.82 0.00 41.51 3.18
3217 7227 4.724602 GTCTGCTGCGAGCCGTGA 62.725 66.667 5.82 0.49 41.51 4.35
3243 7253 0.875908 TTAGCCACGATCATGCGAGC 60.876 55.000 0.00 2.80 35.46 5.03
3244 7254 1.135046 CTTAGCCACGATCATGCGAG 58.865 55.000 0.00 0.00 34.83 5.03
3245 7255 0.875908 GCTTAGCCACGATCATGCGA 60.876 55.000 0.00 0.00 34.83 5.10
3246 7256 1.566563 GCTTAGCCACGATCATGCG 59.433 57.895 0.00 0.00 37.29 4.73
3258 7268 3.341835 GGCGATGCGAGGCTTAGC 61.342 66.667 8.67 8.67 34.67 3.09
3259 7269 1.953138 CTGGCGATGCGAGGCTTAG 60.953 63.158 0.00 0.00 30.86 2.18
3260 7270 2.106938 CTGGCGATGCGAGGCTTA 59.893 61.111 0.00 0.00 30.86 3.09
3273 7283 4.424566 CACCATGTTGCGGCTGGC 62.425 66.667 5.95 0.00 43.96 4.85
3274 7284 4.424566 GCACCATGTTGCGGCTGG 62.425 66.667 0.00 2.68 36.09 4.85
3275 7285 3.672447 TGCACCATGTTGCGGCTG 61.672 61.111 10.88 0.00 46.20 4.85
3276 7286 3.673484 GTGCACCATGTTGCGGCT 61.673 61.111 10.88 0.00 46.20 5.52
3277 7287 3.615536 GAGTGCACCATGTTGCGGC 62.616 63.158 14.63 6.16 46.20 6.53
3278 7288 2.562912 GAGTGCACCATGTTGCGG 59.437 61.111 14.63 0.00 46.20 5.69
3279 7289 2.174107 CGAGTGCACCATGTTGCG 59.826 61.111 14.63 2.56 46.20 4.85
3280 7290 2.126734 GCGAGTGCACCATGTTGC 60.127 61.111 14.63 8.51 43.31 4.17
3281 7291 2.562912 GGCGAGTGCACCATGTTG 59.437 61.111 14.63 0.00 45.35 3.33
3282 7292 3.049674 CGGCGAGTGCACCATGTT 61.050 61.111 14.63 0.00 45.35 2.71
3283 7293 4.314440 ACGGCGAGTGCACCATGT 62.314 61.111 16.62 2.44 45.35 3.21
3284 7294 3.490759 GACGGCGAGTGCACCATG 61.491 66.667 16.62 4.59 45.35 3.66
3285 7295 4.002506 TGACGGCGAGTGCACCAT 62.003 61.111 16.62 0.00 45.35 3.55
3286 7296 4.961511 GTGACGGCGAGTGCACCA 62.962 66.667 16.62 0.00 45.35 4.17
3287 7297 4.961511 TGTGACGGCGAGTGCACC 62.962 66.667 16.62 4.10 45.35 5.01
3288 7298 3.406361 CTGTGACGGCGAGTGCAC 61.406 66.667 16.62 9.40 45.35 4.57
3291 7301 3.406361 GTGCTGTGACGGCGAGTG 61.406 66.667 16.62 0.00 38.82 3.51
3321 7331 1.459539 GGATGATCTGTCCCGGGGA 60.460 63.158 23.50 12.99 0.00 4.81
3322 7332 2.872388 CGGATGATCTGTCCCGGGG 61.872 68.421 23.50 6.77 38.42 5.73
3323 7333 1.686325 AACGGATGATCTGTCCCGGG 61.686 60.000 16.85 16.85 45.63 5.73
3324 7334 0.530650 CAACGGATGATCTGTCCCGG 60.531 60.000 7.46 0.00 45.63 5.73
3325 7335 0.530650 CCAACGGATGATCTGTCCCG 60.531 60.000 7.46 11.37 46.65 5.14
3326 7336 0.815615 GCCAACGGATGATCTGTCCC 60.816 60.000 7.46 0.00 34.28 4.46
3327 7337 0.179000 AGCCAACGGATGATCTGTCC 59.821 55.000 7.46 7.44 34.28 4.02
3328 7338 1.293924 CAGCCAACGGATGATCTGTC 58.706 55.000 7.46 0.00 42.34 3.51
3329 7339 0.745845 GCAGCCAACGGATGATCTGT 60.746 55.000 0.00 0.00 42.34 3.41
3330 7340 0.745486 TGCAGCCAACGGATGATCTG 60.745 55.000 1.71 0.00 42.34 2.90
3331 7341 0.182061 ATGCAGCCAACGGATGATCT 59.818 50.000 1.71 0.00 42.34 2.75
3332 7342 0.590195 GATGCAGCCAACGGATGATC 59.410 55.000 1.71 0.00 42.34 2.92
3333 7343 1.162181 CGATGCAGCCAACGGATGAT 61.162 55.000 1.71 0.00 42.34 2.45
3334 7344 1.815003 CGATGCAGCCAACGGATGA 60.815 57.895 1.71 0.00 42.34 2.92
3335 7345 1.769098 CTCGATGCAGCCAACGGATG 61.769 60.000 0.00 0.00 42.66 3.51
3336 7346 1.522355 CTCGATGCAGCCAACGGAT 60.522 57.895 0.00 0.00 37.76 4.18
3337 7347 2.125552 CTCGATGCAGCCAACGGA 60.126 61.111 0.00 0.00 37.76 4.69
3338 7348 2.434884 ACTCGATGCAGCCAACGG 60.435 61.111 0.00 0.00 37.76 4.44
3339 7349 2.780643 CACTCGATGCAGCCAACG 59.219 61.111 0.00 0.00 38.43 4.10
3348 7358 2.444624 CGGACGGTTGCACTCGATG 61.445 63.158 13.81 1.04 0.00 3.84
3349 7359 2.126071 CGGACGGTTGCACTCGAT 60.126 61.111 13.81 0.02 0.00 3.59
3368 7378 4.379243 AGCCTCGACAGCAACCCG 62.379 66.667 5.55 0.00 0.00 5.28
3369 7379 2.435059 GAGCCTCGACAGCAACCC 60.435 66.667 5.55 0.00 0.00 4.11
3370 7380 2.811317 CGAGCCTCGACAGCAACC 60.811 66.667 8.82 0.00 43.74 3.77
3371 7381 2.049063 ACGAGCCTCGACAGCAAC 60.049 61.111 22.80 0.00 43.74 4.17
3372 7382 2.258591 GACGAGCCTCGACAGCAA 59.741 61.111 22.80 0.00 43.74 3.91
3373 7383 4.103103 CGACGAGCCTCGACAGCA 62.103 66.667 22.80 0.00 43.74 4.41
3402 7412 4.828341 GACGACGATGTTGCGCGC 62.828 66.667 27.26 27.26 35.40 6.86
3403 7413 2.210524 AAAGACGACGATGTTGCGCG 62.211 55.000 0.00 0.00 37.04 6.86
3404 7414 0.516524 GAAAGACGACGATGTTGCGC 60.517 55.000 0.00 0.00 33.86 6.09
3405 7415 0.781787 TGAAAGACGACGATGTTGCG 59.218 50.000 0.00 0.00 37.29 4.85
3406 7416 1.792949 AGTGAAAGACGACGATGTTGC 59.207 47.619 0.00 0.00 0.00 4.17
3407 7417 3.309388 AGAGTGAAAGACGACGATGTTG 58.691 45.455 0.00 0.00 0.00 3.33
3408 7418 3.644884 AGAGTGAAAGACGACGATGTT 57.355 42.857 0.00 0.00 0.00 2.71
3409 7419 3.644884 AAGAGTGAAAGACGACGATGT 57.355 42.857 0.00 0.00 0.00 3.06
3410 7420 4.230657 AGAAAGAGTGAAAGACGACGATG 58.769 43.478 0.00 0.00 0.00 3.84
3411 7421 4.506886 AGAAAGAGTGAAAGACGACGAT 57.493 40.909 0.00 0.00 0.00 3.73
3412 7422 3.984508 AGAAAGAGTGAAAGACGACGA 57.015 42.857 0.00 0.00 0.00 4.20
3413 7423 3.182572 CCAAGAAAGAGTGAAAGACGACG 59.817 47.826 0.00 0.00 0.00 5.12
3414 7424 3.495001 CCCAAGAAAGAGTGAAAGACGAC 59.505 47.826 0.00 0.00 0.00 4.34
3415 7425 3.134081 ACCCAAGAAAGAGTGAAAGACGA 59.866 43.478 0.00 0.00 0.00 4.20
3416 7426 3.467803 ACCCAAGAAAGAGTGAAAGACG 58.532 45.455 0.00 0.00 0.00 4.18
3417 7427 4.273724 GTGACCCAAGAAAGAGTGAAAGAC 59.726 45.833 0.00 0.00 0.00 3.01
3418 7428 4.451900 GTGACCCAAGAAAGAGTGAAAGA 58.548 43.478 0.00 0.00 0.00 2.52
3419 7429 3.565902 GGTGACCCAAGAAAGAGTGAAAG 59.434 47.826 0.00 0.00 0.00 2.62
3420 7430 3.053991 TGGTGACCCAAGAAAGAGTGAAA 60.054 43.478 0.00 0.00 37.98 2.69
3421 7431 2.507886 TGGTGACCCAAGAAAGAGTGAA 59.492 45.455 0.00 0.00 37.98 3.18
3422 7432 2.123589 TGGTGACCCAAGAAAGAGTGA 58.876 47.619 0.00 0.00 37.98 3.41
3423 7433 2.638480 TGGTGACCCAAGAAAGAGTG 57.362 50.000 0.00 0.00 37.98 3.51
3424 7434 3.884037 AATGGTGACCCAAGAAAGAGT 57.116 42.857 0.00 0.00 46.04 3.24
3425 7435 4.829492 AGAAAATGGTGACCCAAGAAAGAG 59.171 41.667 0.00 0.00 46.04 2.85
3426 7436 4.803452 AGAAAATGGTGACCCAAGAAAGA 58.197 39.130 0.00 0.00 46.04 2.52
3427 7437 4.584325 TGAGAAAATGGTGACCCAAGAAAG 59.416 41.667 0.00 0.00 46.04 2.62
3428 7438 4.541705 TGAGAAAATGGTGACCCAAGAAA 58.458 39.130 0.00 0.00 46.04 2.52
3429 7439 4.177537 TGAGAAAATGGTGACCCAAGAA 57.822 40.909 0.00 0.00 46.04 2.52
3430 7440 3.874383 TGAGAAAATGGTGACCCAAGA 57.126 42.857 0.00 0.00 46.04 3.02
3431 7441 5.711976 AGTAATGAGAAAATGGTGACCCAAG 59.288 40.000 0.00 0.00 46.04 3.61
3432 7442 5.476599 CAGTAATGAGAAAATGGTGACCCAA 59.523 40.000 0.00 0.00 46.04 4.12
3434 7444 5.010282 ACAGTAATGAGAAAATGGTGACCC 58.990 41.667 0.00 0.00 0.00 4.46
3435 7445 5.163854 CGACAGTAATGAGAAAATGGTGACC 60.164 44.000 0.00 0.00 0.00 4.02
3436 7446 5.408604 ACGACAGTAATGAGAAAATGGTGAC 59.591 40.000 0.00 0.00 0.00 3.67
3437 7447 5.547465 ACGACAGTAATGAGAAAATGGTGA 58.453 37.500 0.00 0.00 0.00 4.02
3438 7448 5.862924 ACGACAGTAATGAGAAAATGGTG 57.137 39.130 0.00 0.00 0.00 4.17
3439 7449 6.931838 TCTACGACAGTAATGAGAAAATGGT 58.068 36.000 0.00 0.00 31.59 3.55
3440 7450 6.019479 GCTCTACGACAGTAATGAGAAAATGG 60.019 42.308 0.00 0.00 30.84 3.16
3441 7451 6.019479 GGCTCTACGACAGTAATGAGAAAATG 60.019 42.308 0.00 0.00 30.84 2.32
3442 7452 6.043411 GGCTCTACGACAGTAATGAGAAAAT 58.957 40.000 0.00 0.00 30.84 1.82
3443 7453 5.185249 AGGCTCTACGACAGTAATGAGAAAA 59.815 40.000 0.00 0.00 30.84 2.29
3444 7454 4.705507 AGGCTCTACGACAGTAATGAGAAA 59.294 41.667 0.00 0.00 30.84 2.52
3445 7455 4.270834 AGGCTCTACGACAGTAATGAGAA 58.729 43.478 0.00 0.00 30.84 2.87
3446 7456 3.887352 AGGCTCTACGACAGTAATGAGA 58.113 45.455 0.00 0.00 30.84 3.27
3447 7457 4.640789 AAGGCTCTACGACAGTAATGAG 57.359 45.455 0.00 0.00 31.84 2.90
3448 7458 5.047590 TGAAAAGGCTCTACGACAGTAATGA 60.048 40.000 0.00 0.00 31.59 2.57
3449 7459 5.168569 TGAAAAGGCTCTACGACAGTAATG 58.831 41.667 0.00 0.00 31.59 1.90
3450 7460 5.401531 TGAAAAGGCTCTACGACAGTAAT 57.598 39.130 0.00 0.00 31.59 1.89
3451 7461 4.859304 TGAAAAGGCTCTACGACAGTAA 57.141 40.909 0.00 0.00 31.59 2.24
3452 7462 4.438336 CGATGAAAAGGCTCTACGACAGTA 60.438 45.833 0.00 0.00 0.00 2.74
3453 7463 3.673594 CGATGAAAAGGCTCTACGACAGT 60.674 47.826 0.00 0.00 0.00 3.55
3454 7464 2.854777 CGATGAAAAGGCTCTACGACAG 59.145 50.000 0.00 0.00 0.00 3.51
3455 7465 2.230508 ACGATGAAAAGGCTCTACGACA 59.769 45.455 0.00 0.00 0.00 4.35
3456 7466 2.877335 ACGATGAAAAGGCTCTACGAC 58.123 47.619 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.