Multiple sequence alignment - TraesCS1D01G073500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G073500 chr1D 100.000 9735 0 0 1 9735 54903038 54912772 0.000000e+00 17978.0
1 TraesCS1D01G073500 chr1A 94.180 2749 83 22 724 3449 53864917 53867611 0.000000e+00 4119.0
2 TraesCS1D01G073500 chr1A 96.677 1625 46 7 3623 5245 53867605 53869223 0.000000e+00 2695.0
3 TraesCS1D01G073500 chr1A 94.767 1032 34 10 6034 7064 53880113 53881125 0.000000e+00 1589.0
4 TraesCS1D01G073500 chr1A 87.743 1183 104 21 2269 3448 53851607 53852751 0.000000e+00 1343.0
5 TraesCS1D01G073500 chr1A 87.889 1156 103 19 881 2025 53850064 53851193 0.000000e+00 1325.0
6 TraesCS1D01G073500 chr1A 94.519 821 34 5 5241 6050 53876550 53877370 0.000000e+00 1256.0
7 TraesCS1D01G073500 chr1A 85.577 1248 111 33 4787 5992 53853220 53854440 0.000000e+00 1243.0
8 TraesCS1D01G073500 chr1A 92.471 850 32 7 7147 7994 53881116 53881935 0.000000e+00 1186.0
9 TraesCS1D01G073500 chr1A 87.568 732 50 12 1 725 53864086 53864783 0.000000e+00 809.0
10 TraesCS1D01G073500 chr1A 94.690 339 16 1 7996 8332 53901755 53902093 8.660000e-145 525.0
11 TraesCS1D01G073500 chr1A 82.043 607 34 26 8473 9041 53902192 53902761 1.930000e-121 448.0
12 TraesCS1D01G073500 chr1A 80.240 501 61 12 8344 8826 53855890 53856370 9.360000e-90 342.0
13 TraesCS1D01G073500 chr1A 90.756 238 14 5 9370 9605 53903916 53904147 2.640000e-80 311.0
14 TraesCS1D01G073500 chr1A 88.776 196 18 2 3623 3818 53852746 53852937 4.540000e-58 237.0
15 TraesCS1D01G073500 chr1A 94.937 79 4 0 9657 9735 53904147 53904225 3.690000e-24 124.0
16 TraesCS1D01G073500 chr1A 86.486 74 10 0 4661 4734 53852941 53853014 2.250000e-11 82.4
17 TraesCS1D01G073500 chr1A 92.157 51 4 0 8325 8375 53902143 53902193 1.360000e-08 73.1
18 TraesCS1D01G073500 chr1B 94.549 1651 56 11 5431 7064 90430467 90428834 0.000000e+00 2519.0
19 TraesCS1D01G073500 chr1B 94.271 1187 57 7 7147 8332 90428843 90427667 0.000000e+00 1805.0
20 TraesCS1D01G073500 chr1B 91.339 1247 35 19 4186 5423 90436922 90435740 0.000000e+00 1637.0
21 TraesCS1D01G073500 chr1B 94.637 578 29 1 3623 4200 90437517 90436942 0.000000e+00 894.0
22 TraesCS1D01G073500 chr1B 89.766 684 35 14 8331 8987 90427625 90426950 0.000000e+00 843.0
23 TraesCS1D01G073500 chr1B 87.318 686 44 17 9066 9735 90425244 90424586 0.000000e+00 745.0
24 TraesCS1D01G073500 chr1B 96.893 354 11 0 3096 3449 90437864 90437511 2.340000e-165 593.0
25 TraesCS1D01G073500 chr1B 94.286 105 5 1 7048 7152 652334945 652334842 1.010000e-34 159.0
26 TraesCS1D01G073500 chrUn 86.562 1332 123 30 2138 3456 3831646 3830358 0.000000e+00 1417.0
27 TraesCS1D01G073500 chrUn 86.474 1279 122 22 4787 6021 3700439 3699168 0.000000e+00 1356.0
28 TraesCS1D01G073500 chrUn 87.879 1155 106 17 881 2025 3833006 3831876 0.000000e+00 1327.0
29 TraesCS1D01G073500 chrUn 80.904 1173 147 47 3623 4735 3830373 3829218 0.000000e+00 854.0
30 TraesCS1D01G073500 chrUn 82.779 511 69 13 1493 1994 117283572 117284072 1.160000e-118 438.0
31 TraesCS1D01G073500 chrUn 80.549 437 43 18 8380 8814 3697118 3696722 2.060000e-76 298.0
32 TraesCS1D01G073500 chrUn 85.946 185 26 0 541 725 33368454 33368638 2.140000e-46 198.0
33 TraesCS1D01G073500 chr7B 83.784 629 76 19 2074 2697 7093844 7094451 3.050000e-159 573.0
34 TraesCS1D01G073500 chr7B 82.989 629 79 20 2074 2697 676799281 676799886 2.390000e-150 544.0
35 TraesCS1D01G073500 chr7B 94.286 35 2 0 291 325 2581241 2581207 5.000000e-03 54.7
36 TraesCS1D01G073500 chr3D 83.826 507 64 14 1493 1994 54336367 54336860 5.320000e-127 466.0
37 TraesCS1D01G073500 chr3D 84.314 102 5 9 4 104 565010792 565010701 1.350000e-13 89.8
38 TraesCS1D01G073500 chr5B 83.694 509 66 11 1493 1994 420933501 420933999 1.920000e-126 464.0
39 TraesCS1D01G073500 chr5B 83.497 509 66 13 1493 1994 702386236 702386733 8.910000e-125 459.0
40 TraesCS1D01G073500 chr5B 83.333 510 66 13 1493 1994 581761656 581762154 4.150000e-123 453.0
41 TraesCS1D01G073500 chr5B 87.778 180 22 0 546 725 620768097 620768276 2.750000e-50 211.0
42 TraesCS1D01G073500 chr5B 85.915 142 18 2 590 729 374898779 374898638 6.090000e-32 150.0
43 TraesCS1D01G073500 chr3B 83.333 510 66 14 1493 1994 51865776 51866274 4.150000e-123 453.0
44 TraesCS1D01G073500 chr3B 97.895 95 2 0 7058 7152 481626699 481626605 2.180000e-36 165.0
45 TraesCS1D01G073500 chr3B 95.192 104 2 3 7062 7163 48667395 48667293 2.810000e-35 161.0
46 TraesCS1D01G073500 chr3B 81.771 192 24 8 219 401 176618446 176618257 6.090000e-32 150.0
47 TraesCS1D01G073500 chr3B 82.927 123 15 5 56 173 11016121 11016000 1.340000e-18 106.0
48 TraesCS1D01G073500 chr2D 76.551 806 133 32 4817 5591 590334919 590334139 3.300000e-104 390.0
49 TraesCS1D01G073500 chr2D 96.000 100 4 0 7059 7158 561840766 561840865 7.820000e-36 163.0
50 TraesCS1D01G073500 chr2A 76.055 806 138 29 4817 5591 724735797 724735016 1.540000e-97 368.0
51 TraesCS1D01G073500 chr2A 84.699 183 26 2 544 725 139922035 139921854 2.160000e-41 182.0
52 TraesCS1D01G073500 chr2A 100.000 28 0 0 1 28 706928223 706928250 1.800000e-02 52.8
53 TraesCS1D01G073500 chr5D 79.459 555 65 36 1 534 219774377 219773851 2.010000e-91 348.0
54 TraesCS1D01G073500 chr2B 75.180 834 140 41 4778 5592 715313755 715312970 2.030000e-86 331.0
55 TraesCS1D01G073500 chr2B 95.402 174 6 2 3450 3623 137066961 137067132 9.630000e-70 276.0
56 TraesCS1D01G073500 chr2B 93.923 181 9 2 3450 3630 164420567 164420745 1.250000e-68 272.0
57 TraesCS1D01G073500 chr6B 81.455 426 38 23 146 534 458482214 458481793 2.640000e-80 311.0
58 TraesCS1D01G073500 chr6B 85.165 182 27 0 544 725 54737286 54737467 4.640000e-43 187.0
59 TraesCS1D01G073500 chr6B 85.165 182 27 0 544 725 54782229 54782410 4.640000e-43 187.0
60 TraesCS1D01G073500 chr6B 84.091 88 4 7 1 87 521362137 521362059 1.050000e-09 76.8
61 TraesCS1D01G073500 chr7A 95.977 174 6 1 3450 3623 648121507 648121335 2.070000e-71 281.0
62 TraesCS1D01G073500 chr7A 85.714 182 26 0 544 725 9658559 9658378 9.980000e-45 193.0
63 TraesCS1D01G073500 chr5A 84.746 295 30 11 2083 2371 584439549 584439834 2.070000e-71 281.0
64 TraesCS1D01G073500 chr5A 97.938 97 2 0 7056 7152 255614415 255614511 1.680000e-37 169.0
65 TraesCS1D01G073500 chr5A 82.514 183 30 2 544 725 276110717 276110898 1.010000e-34 159.0
66 TraesCS1D01G073500 chr5A 89.831 59 5 1 45 102 458182798 458182740 3.770000e-09 75.0
67 TraesCS1D01G073500 chr5A 100.000 28 0 0 1 28 435703983 435703956 1.800000e-02 52.8
68 TraesCS1D01G073500 chr7D 95.402 174 6 2 3450 3623 611940691 611940862 9.630000e-70 276.0
69 TraesCS1D01G073500 chr7D 94.828 174 7 2 3450 3623 476211200 476211029 4.480000e-68 270.0
70 TraesCS1D01G073500 chr7D 76.364 165 16 17 2 158 593025446 593025595 6.310000e-07 67.6
71 TraesCS1D01G073500 chr4D 95.429 175 5 3 3450 3623 458888848 458888676 9.630000e-70 276.0
72 TraesCS1D01G073500 chr4D 94.828 174 8 1 3450 3623 336449878 336450050 4.480000e-68 270.0
73 TraesCS1D01G073500 chr4D 97.000 100 1 1 7053 7152 474580297 474580200 6.050000e-37 167.0
74 TraesCS1D01G073500 chr4D 93.458 107 5 2 7046 7152 47533179 47533075 3.640000e-34 158.0
75 TraesCS1D01G073500 chr4D 84.956 113 4 10 1 110 451692486 451692384 1.730000e-17 102.0
76 TraesCS1D01G073500 chr4D 85.714 105 3 9 1 103 318470299 318470393 6.220000e-17 100.0
77 TraesCS1D01G073500 chr4A 94.828 174 8 1 3450 3623 167088168 167087996 4.480000e-68 270.0
78 TraesCS1D01G073500 chr4A 96.000 100 4 0 7053 7152 369545822 369545921 7.820000e-36 163.0
79 TraesCS1D01G073500 chr4A 79.096 177 15 16 1 171 647183281 647183121 1.730000e-17 102.0
80 TraesCS1D01G073500 chr4B 93.370 181 11 1 3443 3623 590433869 590434048 5.800000e-67 267.0
81 TraesCS1D01G073500 chr4B 81.761 318 38 18 167 473 66186951 66186643 2.100000e-61 248.0
82 TraesCS1D01G073500 chr3A 97.895 95 2 0 7058 7152 457630591 457630685 2.180000e-36 165.0
83 TraesCS1D01G073500 chr3A 92.857 56 2 1 46 99 16947218 16947163 8.100000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G073500 chr1D 54903038 54912772 9734 False 17978.000000 17978 100.000000 1 9735 1 chr1D.!!$F1 9734
1 TraesCS1D01G073500 chr1A 53864086 53869223 5137 False 2541.000000 4119 92.808333 1 5245 3 chr1A.!!$F2 5244
2 TraesCS1D01G073500 chr1A 53876550 53881935 5385 False 1343.666667 1589 93.919000 5241 7994 3 chr1A.!!$F3 2753
3 TraesCS1D01G073500 chr1A 53850064 53856370 6306 False 762.066667 1343 86.118500 881 8826 6 chr1A.!!$F1 7945
4 TraesCS1D01G073500 chr1A 53901755 53904225 2470 False 296.220000 525 90.916600 7996 9735 5 chr1A.!!$F4 1739
5 TraesCS1D01G073500 chr1B 90424586 90430467 5881 True 1478.000000 2519 91.476000 5431 9735 4 chr1B.!!$R2 4304
6 TraesCS1D01G073500 chr1B 90435740 90437864 2124 True 1041.333333 1637 94.289667 3096 5423 3 chr1B.!!$R3 2327
7 TraesCS1D01G073500 chrUn 3829218 3833006 3788 True 1199.333333 1417 85.115000 881 4735 3 chrUn.!!$R2 3854
8 TraesCS1D01G073500 chrUn 3696722 3700439 3717 True 827.000000 1356 83.511500 4787 8814 2 chrUn.!!$R1 4027
9 TraesCS1D01G073500 chrUn 117283572 117284072 500 False 438.000000 438 82.779000 1493 1994 1 chrUn.!!$F2 501
10 TraesCS1D01G073500 chr7B 7093844 7094451 607 False 573.000000 573 83.784000 2074 2697 1 chr7B.!!$F1 623
11 TraesCS1D01G073500 chr7B 676799281 676799886 605 False 544.000000 544 82.989000 2074 2697 1 chr7B.!!$F2 623
12 TraesCS1D01G073500 chr2D 590334139 590334919 780 True 390.000000 390 76.551000 4817 5591 1 chr2D.!!$R1 774
13 TraesCS1D01G073500 chr2A 724735016 724735797 781 True 368.000000 368 76.055000 4817 5591 1 chr2A.!!$R2 774
14 TraesCS1D01G073500 chr5D 219773851 219774377 526 True 348.000000 348 79.459000 1 534 1 chr5D.!!$R1 533
15 TraesCS1D01G073500 chr2B 715312970 715313755 785 True 331.000000 331 75.180000 4778 5592 1 chr2B.!!$R1 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 639 0.095245 CCTATGAAAGCACACACGCG 59.905 55.000 3.53 3.53 36.85 6.01 F
697 721 0.455005 GGTACTGTAGGCACCTCGTC 59.545 60.000 0.00 0.00 0.00 4.20 F
798 957 0.541392 TCTCGGCCCGTACTACAGTA 59.459 55.000 1.63 0.00 0.00 2.74 F
2650 3058 0.684535 TGGAAGCGACAATGAGGTCA 59.315 50.000 0.00 0.00 37.66 4.02 F
3523 3936 0.521291 TTACTGACCAAAGCGCATGC 59.479 50.000 11.47 7.91 43.24 4.06 F
3577 3990 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09 F
3605 4018 0.390472 GCTCAAGTGCTCGCTTAGGT 60.390 55.000 0.00 0.00 0.00 3.08 F
3607 4020 0.670546 TCAAGTGCTCGCTTAGGTGC 60.671 55.000 0.00 0.00 0.00 5.01 F
3716 4129 1.071471 GCCGAGGGTCACATATGGG 59.929 63.158 7.80 2.34 0.00 4.00 F
4909 5561 1.270518 GGCGATGAGTGCATGTATCCT 60.271 52.381 0.00 0.00 34.11 3.24 F
5571 6286 3.335579 GCTTGAAGTTACTGGTAGGGTG 58.664 50.000 0.00 0.00 0.00 4.61 F
6936 10580 1.871080 CAGTCTGCAATATCCGGTCC 58.129 55.000 0.00 0.00 0.00 4.46 F
8187 12009 0.036483 TAGTGCTTCTTCCATGCGCA 60.036 50.000 14.96 14.96 37.98 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2595 3003 1.002868 CTGGGGAAGACCTGCTGTG 60.003 63.158 0.00 0.00 40.03 3.66 R
2628 3036 1.019673 CCTCATTGTCGCTTCCATGG 58.980 55.000 4.97 4.97 0.00 3.66 R
2670 3078 7.094805 GCAAATTTAGTAGGTGTGATTGACTGA 60.095 37.037 0.00 0.00 0.00 3.41 R
3558 3971 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43 R
5324 6029 5.064441 CATTCCTTCAAGAATGTCAACCC 57.936 43.478 6.17 0.00 45.30 4.11 R
5536 6251 3.243907 ACTTCAAGCGAGTAAACAGCTCT 60.244 43.478 4.07 0.00 40.78 4.09 R
5602 6317 4.929819 ACCCGTTTCTTTAGTTTTGCAT 57.070 36.364 0.00 0.00 0.00 3.96 R
5611 6335 7.040340 TGCTGATTTATTCAACCCGTTTCTTTA 60.040 33.333 0.00 0.00 32.78 1.85 R
5649 6373 7.411486 AACAGACATAGCTCACTACATTACT 57.589 36.000 0.00 0.00 0.00 2.24 R
6818 10460 2.877097 TGTGATGGCATGGTTGTACT 57.123 45.000 3.81 0.00 0.00 2.73 R
7100 10905 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12 R
8521 12446 0.248843 CACACTCTGCCTCCTCCTTC 59.751 60.000 0.00 0.00 0.00 3.46 R
9322 15210 0.036952 AATGCTGGTCGTCACTCCTG 60.037 55.000 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
270 287 6.315393 ACATGTATAGGAAAAATGTCGACCAC 59.685 38.462 14.12 0.00 0.00 4.16
508 531 5.977129 ACTGAATAAAACAGAAAAAGCGGTG 59.023 36.000 0.00 0.00 38.55 4.94
509 532 5.285651 TGAATAAAACAGAAAAAGCGGTGG 58.714 37.500 0.00 0.00 0.00 4.61
510 533 5.067936 TGAATAAAACAGAAAAAGCGGTGGA 59.932 36.000 0.00 0.00 0.00 4.02
511 534 3.436700 AAAACAGAAAAAGCGGTGGAG 57.563 42.857 0.00 0.00 0.00 3.86
512 535 2.341846 AACAGAAAAAGCGGTGGAGA 57.658 45.000 0.00 0.00 0.00 3.71
528 551 5.064834 CGGTGGAGAAAATAGGCTCTTTTAC 59.935 44.000 10.19 5.64 0.00 2.01
542 565 7.562135 AGGCTCTTTTACATTAATCGGAGTTA 58.438 34.615 0.00 0.00 0.00 2.24
561 585 9.146984 CGGAGTTATTTTAAACATCAGTACAGA 57.853 33.333 0.00 0.00 0.00 3.41
581 605 4.385146 CAGACAGAAGCGCTCATATACATG 59.615 45.833 12.06 3.52 0.00 3.21
582 606 4.038522 AGACAGAAGCGCTCATATACATGT 59.961 41.667 12.06 2.69 33.57 3.21
601 625 4.890158 TGTGCATATACTCACCCCTATG 57.110 45.455 0.00 0.00 32.51 2.23
604 628 5.368230 TGTGCATATACTCACCCCTATGAAA 59.632 40.000 0.00 0.00 32.51 2.69
608 632 2.789409 ACTCACCCCTATGAAAGCAC 57.211 50.000 0.00 0.00 0.00 4.40
613 637 1.086696 CCCCTATGAAAGCACACACG 58.913 55.000 0.00 0.00 0.00 4.49
615 639 0.095245 CCTATGAAAGCACACACGCG 59.905 55.000 3.53 3.53 36.85 6.01
616 640 0.519175 CTATGAAAGCACACACGCGC 60.519 55.000 5.73 0.00 36.85 6.86
625 649 4.373116 CACACGCGCACCCTACCT 62.373 66.667 5.73 0.00 0.00 3.08
637 661 1.291033 ACCCTACCTCTATGAGCACCA 59.709 52.381 0.00 0.00 0.00 4.17
639 663 2.975489 CCCTACCTCTATGAGCACCATT 59.025 50.000 0.00 0.00 36.71 3.16
646 670 4.574013 CCTCTATGAGCACCATTGAAAGAC 59.426 45.833 0.00 0.00 36.77 3.01
656 680 1.391485 CATTGAAAGACTGAGCCGTCG 59.609 52.381 0.00 0.00 38.90 5.12
674 698 9.659830 GAGCCGTCGTATCATTTTAAAATTTAT 57.340 29.630 10.77 9.95 0.00 1.40
697 721 0.455005 GGTACTGTAGGCACCTCGTC 59.545 60.000 0.00 0.00 0.00 4.20
701 725 1.583495 CTGTAGGCACCTCGTCGTCA 61.583 60.000 0.00 0.00 0.00 4.35
798 957 0.541392 TCTCGGCCCGTACTACAGTA 59.459 55.000 1.63 0.00 0.00 2.74
825 990 1.588082 CATGTCAGTTTGGCCCTGC 59.412 57.895 0.00 0.00 0.00 4.85
1112 1283 2.587322 TTCGACATCATGGGCCGGAC 62.587 60.000 5.05 0.00 0.00 4.79
1237 1408 4.798682 TTCCTCCCCTCCTCCGCC 62.799 72.222 0.00 0.00 0.00 6.13
1240 1411 4.150454 CTCCCCTCCTCCGCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
1282 1454 5.982356 TCCTCCACTGTATTTCTTCATCTG 58.018 41.667 0.00 0.00 0.00 2.90
1302 1474 5.103687 TCTGATATAAGGAGGCATGGGAAT 58.896 41.667 0.00 0.00 0.00 3.01
1330 1503 1.237954 TTTGTGCGCGGAAATGCCTA 61.238 50.000 8.83 0.00 0.00 3.93
1346 1527 1.202818 GCCTAGATTGGTGGATGGTCC 60.203 57.143 0.00 0.00 36.96 4.46
1646 1835 3.996921 AGTGAGATTCCTCTGCATTGT 57.003 42.857 0.00 0.00 40.10 2.71
1664 1853 9.474920 CTGCATTGTCCTTCATTTTAGTTTTTA 57.525 29.630 0.00 0.00 0.00 1.52
1733 1924 6.985188 TCCAACATACTTGAACTGAATAGC 57.015 37.500 0.00 0.00 0.00 2.97
1757 1948 4.093703 CCAACGGCGTTATATGTTTTCTCA 59.906 41.667 26.32 0.00 0.00 3.27
1766 1957 8.365210 GCGTTATATGTTTTCTCAACATGTTTG 58.635 33.333 8.77 5.19 40.70 2.93
1903 2096 1.217057 AGACATGGCCAGTTGGGGAT 61.217 55.000 13.05 0.00 37.04 3.85
1999 2194 4.884744 AGTGCAACAAATACAACTGGTGTA 59.115 37.500 8.18 8.18 43.33 2.90
2017 2294 6.847400 TGGTGTACGGAAATATCATTTTGTG 58.153 36.000 0.00 0.00 0.00 3.33
2018 2295 5.741982 GGTGTACGGAAATATCATTTTGTGC 59.258 40.000 0.00 0.00 0.00 4.57
2019 2296 6.404293 GGTGTACGGAAATATCATTTTGTGCT 60.404 38.462 0.00 0.00 0.00 4.40
2020 2297 7.201661 GGTGTACGGAAATATCATTTTGTGCTA 60.202 37.037 0.00 0.00 0.00 3.49
2021 2298 7.850982 GTGTACGGAAATATCATTTTGTGCTAG 59.149 37.037 0.00 0.00 0.00 3.42
2022 2299 6.377327 ACGGAAATATCATTTTGTGCTAGG 57.623 37.500 0.00 0.00 0.00 3.02
2023 2300 6.119536 ACGGAAATATCATTTTGTGCTAGGA 58.880 36.000 0.00 0.00 0.00 2.94
2024 2301 6.260936 ACGGAAATATCATTTTGTGCTAGGAG 59.739 38.462 0.00 0.00 0.00 3.69
2025 2302 6.442112 GGAAATATCATTTTGTGCTAGGAGC 58.558 40.000 0.00 0.00 42.82 4.70
2040 2317 6.279513 GCTAGGAGCATATGAGACATTAGT 57.720 41.667 6.97 0.00 41.89 2.24
2041 2318 7.397892 GCTAGGAGCATATGAGACATTAGTA 57.602 40.000 6.97 0.00 41.89 1.82
2042 2319 8.006298 GCTAGGAGCATATGAGACATTAGTAT 57.994 38.462 6.97 0.00 41.89 2.12
2043 2320 8.474025 GCTAGGAGCATATGAGACATTAGTATT 58.526 37.037 6.97 0.00 41.89 1.89
2072 2349 6.721571 ATCTACAATTGTGTTCTGTTACGG 57.278 37.500 21.42 0.00 39.30 4.02
2238 2593 2.554370 TTCCCGTTGGGTTCTAACAG 57.446 50.000 1.04 0.00 44.74 3.16
2298 2705 6.206634 TGTTCTAAATTTGGTGCAGGAACTAG 59.793 38.462 0.00 0.00 36.02 2.57
2353 2760 1.613437 ACTAATGCTGTTTGTGGTGCC 59.387 47.619 0.00 0.00 0.00 5.01
2371 2778 1.203994 GCCGACTTTACTGTCTGGCTA 59.796 52.381 16.75 0.00 44.73 3.93
2428 2836 7.541091 GGCCTTGCTGAAACTATAAAACTTAAC 59.459 37.037 0.00 0.00 0.00 2.01
2460 2868 7.040409 GCAACCTCTTTCCTCTTTCAGAATAAA 60.040 37.037 0.00 0.00 0.00 1.40
2501 2909 9.205719 CATCTTCTCATGATAACATCTTTCGAT 57.794 33.333 0.00 0.00 34.15 3.59
2502 2910 9.775854 ATCTTCTCATGATAACATCTTTCGATT 57.224 29.630 0.00 0.00 34.15 3.34
2539 2947 3.756434 TGCTTTGGCTGTATTTAGTGGTC 59.244 43.478 0.00 0.00 39.59 4.02
2541 2949 4.095036 GCTTTGGCTGTATTTAGTGGTCTC 59.905 45.833 0.00 0.00 35.22 3.36
2649 3057 1.667724 CATGGAAGCGACAATGAGGTC 59.332 52.381 0.00 0.00 34.42 3.85
2650 3058 0.684535 TGGAAGCGACAATGAGGTCA 59.315 50.000 0.00 0.00 37.66 4.02
2669 3077 6.296026 AGGTCAATTGCTACTCTGTTAACAA 58.704 36.000 10.03 0.43 0.00 2.83
2670 3078 6.942576 AGGTCAATTGCTACTCTGTTAACAAT 59.057 34.615 10.03 1.04 0.00 2.71
2673 3081 7.959651 GTCAATTGCTACTCTGTTAACAATCAG 59.040 37.037 10.03 8.31 0.00 2.90
2674 3082 7.661437 TCAATTGCTACTCTGTTAACAATCAGT 59.339 33.333 10.03 13.31 33.89 3.41
2675 3083 7.602517 ATTGCTACTCTGTTAACAATCAGTC 57.397 36.000 10.03 2.67 33.89 3.51
2676 3084 6.096673 TGCTACTCTGTTAACAATCAGTCA 57.903 37.500 10.03 4.94 33.89 3.41
2705 3113 8.338259 CACACCTACTAAATTTGCTATCATCAC 58.662 37.037 0.00 0.00 0.00 3.06
2871 3279 7.777910 TCATACAGGTTCTTTTCCTTTCTTTCA 59.222 33.333 0.00 0.00 32.37 2.69
3268 3680 4.028131 TCTTACGATGTAGGTTGGGTCAT 58.972 43.478 0.00 0.00 0.00 3.06
3448 3861 5.827797 TCATGCACTCTGGGATAAAATTACC 59.172 40.000 0.00 0.00 0.00 2.85
3449 3862 4.532834 TGCACTCTGGGATAAAATTACCC 58.467 43.478 0.00 0.00 43.51 3.69
3483 3896 3.509266 GCTAGGCGTTAATTGTGCG 57.491 52.632 0.00 0.00 0.00 5.34
3484 3897 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.000 0.00 0.00 0.00 5.24
3485 3898 1.129811 GCTAGGCGTTAATTGTGCGTT 59.870 47.619 0.00 0.00 0.00 4.84
3486 3899 2.413634 GCTAGGCGTTAATTGTGCGTTT 60.414 45.455 0.00 0.00 0.00 3.60
3487 3900 2.785713 AGGCGTTAATTGTGCGTTTT 57.214 40.000 0.00 0.00 0.00 2.43
3488 3901 2.389998 AGGCGTTAATTGTGCGTTTTG 58.610 42.857 0.00 0.00 0.00 2.44
3489 3902 1.136748 GGCGTTAATTGTGCGTTTTGC 60.137 47.619 0.00 0.00 46.70 3.68
3490 3903 1.136748 GCGTTAATTGTGCGTTTTGCC 60.137 47.619 0.00 0.00 45.60 4.52
3491 3904 2.120232 CGTTAATTGTGCGTTTTGCCA 58.880 42.857 0.00 0.00 45.60 4.92
3492 3905 2.097637 CGTTAATTGTGCGTTTTGCCAC 60.098 45.455 0.00 0.00 45.60 5.01
3493 3906 2.141535 TAATTGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
3494 3907 0.873743 AATTGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
3495 3908 4.560856 TGTGCGTTTTGCCACCGC 62.561 61.111 0.00 0.00 45.60 5.68
3498 3911 4.279043 GCGTTTTGCCACCGCCTT 62.279 61.111 0.00 0.00 41.50 4.35
3499 3912 2.354539 CGTTTTGCCACCGCCTTG 60.355 61.111 0.00 0.00 0.00 3.61
3500 3913 2.661537 GTTTTGCCACCGCCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
3512 3925 1.502190 GCCTTGCGCTTTACTGACC 59.498 57.895 9.73 0.00 0.00 4.02
3513 3926 1.234615 GCCTTGCGCTTTACTGACCA 61.235 55.000 9.73 0.00 0.00 4.02
3514 3927 1.234821 CCTTGCGCTTTACTGACCAA 58.765 50.000 9.73 0.00 0.00 3.67
3515 3928 1.606668 CCTTGCGCTTTACTGACCAAA 59.393 47.619 9.73 0.00 0.00 3.28
3516 3929 2.350772 CCTTGCGCTTTACTGACCAAAG 60.351 50.000 9.73 0.00 36.32 2.77
3519 3932 3.384702 GCTTTACTGACCAAAGCGC 57.615 52.632 0.00 0.00 45.88 5.92
3520 3933 0.591170 GCTTTACTGACCAAAGCGCA 59.409 50.000 11.47 0.00 45.88 6.09
3521 3934 1.200020 GCTTTACTGACCAAAGCGCAT 59.800 47.619 11.47 0.00 45.88 4.73
3522 3935 2.855180 CTTTACTGACCAAAGCGCATG 58.145 47.619 11.47 8.38 0.00 4.06
3523 3936 0.521291 TTACTGACCAAAGCGCATGC 59.479 50.000 11.47 7.91 43.24 4.06
3536 3949 3.859650 GCATGCTTATGCGCAGATT 57.140 47.368 18.32 0.56 44.10 2.40
3537 3950 2.975410 GCATGCTTATGCGCAGATTA 57.025 45.000 18.32 0.00 44.10 1.75
3538 3951 3.272439 GCATGCTTATGCGCAGATTAA 57.728 42.857 18.32 9.09 44.10 1.40
3539 3952 3.231965 GCATGCTTATGCGCAGATTAAG 58.768 45.455 18.32 19.39 44.10 1.85
3540 3953 3.231965 CATGCTTATGCGCAGATTAAGC 58.768 45.455 32.49 32.49 44.32 3.09
3542 3955 2.032054 TGCTTATGCGCAGATTAAGCAC 59.968 45.455 35.60 19.62 46.61 4.40
3543 3956 2.032054 GCTTATGCGCAGATTAAGCACA 59.968 45.455 33.42 8.62 43.86 4.57
3544 3957 3.847467 GCTTATGCGCAGATTAAGCACAG 60.847 47.826 33.42 17.26 43.86 3.66
3545 3958 1.742761 ATGCGCAGATTAAGCACAGT 58.257 45.000 18.32 0.00 44.12 3.55
3546 3959 1.522668 TGCGCAGATTAAGCACAGTT 58.477 45.000 5.66 0.00 35.81 3.16
3547 3960 2.694213 TGCGCAGATTAAGCACAGTTA 58.306 42.857 5.66 0.00 35.81 2.24
3548 3961 3.270027 TGCGCAGATTAAGCACAGTTAT 58.730 40.909 5.66 0.00 35.81 1.89
3549 3962 3.063861 TGCGCAGATTAAGCACAGTTATG 59.936 43.478 5.66 0.00 35.81 1.90
3550 3963 3.611517 CGCAGATTAAGCACAGTTATGC 58.388 45.455 0.00 0.00 46.50 3.14
3557 3970 2.281359 GCACAGTTATGCGCAATGC 58.719 52.632 17.11 13.88 46.70 3.56
3569 3982 1.201332 GCAATGCGTTTTGCCAACG 59.799 52.632 12.66 12.66 44.94 4.10
3574 3987 4.838959 CGTTTTGCCAACGCCTAG 57.161 55.556 5.44 0.00 36.82 3.02
3575 3988 2.240230 CGTTTTGCCAACGCCTAGA 58.760 52.632 5.44 0.00 36.82 2.43
3576 3989 0.165944 CGTTTTGCCAACGCCTAGAG 59.834 55.000 5.44 0.00 36.82 2.43
3577 3990 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09
3578 3991 1.241315 TTTTGCCAACGCCTAGAGCC 61.241 55.000 0.00 0.00 38.78 4.70
3579 3992 2.124507 TTTGCCAACGCCTAGAGCCT 62.125 55.000 0.00 0.00 38.78 4.58
3580 3993 1.261938 TTGCCAACGCCTAGAGCCTA 61.262 55.000 0.00 0.00 38.78 3.93
3581 3994 1.068250 GCCAACGCCTAGAGCCTAG 59.932 63.158 0.00 3.06 38.78 3.02
3582 3995 1.742768 CCAACGCCTAGAGCCTAGG 59.257 63.158 18.85 18.85 38.78 3.02
3587 4000 4.350441 CCTAGAGCCTAGGCGCGC 62.350 72.222 28.76 25.94 45.41 6.86
3588 4001 3.291383 CTAGAGCCTAGGCGCGCT 61.291 66.667 32.29 25.96 45.41 5.92
3593 4006 4.821589 GCCTAGGCGCGCTCAAGT 62.822 66.667 32.29 12.96 0.00 3.16
3594 4007 2.887568 CCTAGGCGCGCTCAAGTG 60.888 66.667 32.29 14.55 0.00 3.16
3602 4015 4.169102 CGCTCAAGTGCTCGCTTA 57.831 55.556 0.00 0.00 0.00 3.09
3603 4016 1.994467 CGCTCAAGTGCTCGCTTAG 59.006 57.895 0.00 0.00 0.00 2.18
3604 4017 1.416813 CGCTCAAGTGCTCGCTTAGG 61.417 60.000 0.00 0.00 0.00 2.69
3605 4018 0.390472 GCTCAAGTGCTCGCTTAGGT 60.390 55.000 0.00 0.00 0.00 3.08
3606 4019 1.354040 CTCAAGTGCTCGCTTAGGTG 58.646 55.000 0.00 0.00 0.00 4.00
3607 4020 0.670546 TCAAGTGCTCGCTTAGGTGC 60.671 55.000 0.00 0.00 0.00 5.01
3716 4129 1.071471 GCCGAGGGTCACATATGGG 59.929 63.158 7.80 2.34 0.00 4.00
3762 4175 4.510167 ACCTTGCACCTTAAGCTGATAT 57.490 40.909 1.80 0.00 0.00 1.63
3838 4253 3.114606 TCCAAGTGAGATGGCATAGGAA 58.885 45.455 0.00 0.00 37.88 3.36
4099 4539 9.425893 CATCGTGTAAATGTTCACTATCATTTC 57.574 33.333 6.43 1.73 41.40 2.17
4104 4544 8.447833 TGTAAATGTTCACTATCATTTCCGTTC 58.552 33.333 6.43 0.00 41.40 3.95
4153 4593 4.753186 TCCTACTCCCTCCATCCTAATTC 58.247 47.826 0.00 0.00 0.00 2.17
4201 4675 9.522804 GTGTTTAACTTTGACCAATGAAATGTA 57.477 29.630 0.00 0.00 0.00 2.29
4307 4795 9.840427 ATTGGTCTAATTAAATCACAAAAGACG 57.160 29.630 0.00 0.00 34.35 4.18
4407 4900 2.799017 AGATGTGGCTGAAGATGCAAA 58.201 42.857 0.00 0.00 0.00 3.68
4714 5213 8.186709 TCATCTGCAAGTTAGATCTCATATCA 57.813 34.615 0.00 0.00 32.75 2.15
4726 5225 6.955364 AGATCTCATATCACATATGGTTGGG 58.045 40.000 7.80 0.00 42.23 4.12
4909 5561 1.270518 GGCGATGAGTGCATGTATCCT 60.271 52.381 0.00 0.00 34.11 3.24
5030 5726 8.456471 TCATAATCAGAGCTTTCTGTTGAAATG 58.544 33.333 3.17 3.02 40.85 2.32
5414 6126 9.757227 GTGGCATCCTCTATTCATACTATTATC 57.243 37.037 0.00 0.00 0.00 1.75
5536 6251 6.872920 GGTAACTAAATGGGATTTCATGCAA 58.127 36.000 0.00 0.00 33.82 4.08
5564 6279 4.748102 TGTTTACTCGCTTGAAGTTACTGG 59.252 41.667 0.00 0.00 0.00 4.00
5571 6286 3.335579 GCTTGAAGTTACTGGTAGGGTG 58.664 50.000 0.00 0.00 0.00 4.61
5649 6373 6.151480 TGAATAAATCAGCAGCATGACTTTGA 59.849 34.615 0.00 0.73 33.10 2.69
5678 6416 6.621613 TGTAGTGAGCTATGTCTGTTAACAG 58.378 40.000 26.60 26.60 45.08 3.16
5797 6544 9.629878 TTAGGAGGTAACAGTGAAACAAAAATA 57.370 29.630 0.00 0.00 41.43 1.40
6166 9737 7.559590 AGGTGTGCATTTCTCTTATGTATTC 57.440 36.000 0.00 0.00 0.00 1.75
6356 9941 3.626680 TTCTTCCGCGCCGAGACAG 62.627 63.158 0.00 0.00 0.00 3.51
6486 10113 6.552932 AGCCAGTTTCCCTATTTAAGTTCTT 58.447 36.000 0.00 0.00 0.00 2.52
6650 10282 8.442632 TCATGACTTGGAGATTTATCATGAAC 57.557 34.615 11.28 0.00 45.69 3.18
6874 10516 2.162319 TTTAGCGACATCACTGCACA 57.838 45.000 0.00 0.00 0.00 4.57
6900 10542 8.298030 CCAATTTCTGGTTCAAATTTAGTGAC 57.702 34.615 0.00 0.00 40.78 3.67
6901 10543 8.143835 CCAATTTCTGGTTCAAATTTAGTGACT 58.856 33.333 0.00 0.00 40.78 3.41
6902 10544 9.185192 CAATTTCTGGTTCAAATTTAGTGACTC 57.815 33.333 0.00 0.00 32.25 3.36
6936 10580 1.871080 CAGTCTGCAATATCCGGTCC 58.129 55.000 0.00 0.00 0.00 4.46
7059 10864 7.930325 GTGGGGACTTTTTACTAGTATATGGTC 59.070 40.741 2.79 9.91 0.00 4.02
7060 10865 7.847848 TGGGGACTTTTTACTAGTATATGGTCT 59.152 37.037 2.79 0.00 0.00 3.85
7061 10866 9.372189 GGGGACTTTTTACTAGTATATGGTCTA 57.628 37.037 2.79 0.00 0.00 2.59
7072 10877 8.809066 ACTAGTATATGGTCTACAACAACAACA 58.191 33.333 0.00 0.00 0.00 3.33
7073 10878 9.647797 CTAGTATATGGTCTACAACAACAACAA 57.352 33.333 0.00 0.00 0.00 2.83
7074 10879 8.319143 AGTATATGGTCTACAACAACAACAAC 57.681 34.615 0.00 0.00 0.00 3.32
7075 10880 7.934665 AGTATATGGTCTACAACAACAACAACA 59.065 33.333 0.00 0.00 0.00 3.33
7076 10881 5.906113 ATGGTCTACAACAACAACAACAA 57.094 34.783 0.00 0.00 0.00 2.83
7077 10882 5.049398 TGGTCTACAACAACAACAACAAC 57.951 39.130 0.00 0.00 0.00 3.32
7078 10883 4.519350 TGGTCTACAACAACAACAACAACA 59.481 37.500 0.00 0.00 0.00 3.33
7079 10884 5.009710 TGGTCTACAACAACAACAACAACAA 59.990 36.000 0.00 0.00 0.00 2.83
7080 10885 5.921408 GGTCTACAACAACAACAACAACAAA 59.079 36.000 0.00 0.00 0.00 2.83
7081 10886 6.088883 GGTCTACAACAACAACAACAACAAAG 59.911 38.462 0.00 0.00 0.00 2.77
7082 10887 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
7083 10888 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
7084 10889 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
7085 10890 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
7086 10891 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
7087 10892 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
7088 10893 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
7089 10894 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
7090 10895 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
7091 10896 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
7092 10897 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
7093 10898 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
7094 10899 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
7095 10900 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
7096 10901 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
7097 10902 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
7098 10903 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
7099 10904 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
7100 10905 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
7101 10906 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
7102 10907 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
7111 10916 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
7112 10917 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
7113 10918 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
7114 10919 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
7115 10920 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
7116 10921 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
7117 10922 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
7118 10923 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
7119 10924 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
7120 10925 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
7121 10926 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
7122 10927 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
7138 10943 4.755411 GTGAAACCCATAAGATCTCACGA 58.245 43.478 0.00 0.00 0.00 4.35
7139 10944 4.567159 GTGAAACCCATAAGATCTCACGAC 59.433 45.833 0.00 0.00 0.00 4.34
7140 10945 3.821421 AACCCATAAGATCTCACGACC 57.179 47.619 0.00 0.00 0.00 4.79
7141 10946 2.747177 ACCCATAAGATCTCACGACCA 58.253 47.619 0.00 0.00 0.00 4.02
7142 10947 3.104512 ACCCATAAGATCTCACGACCAA 58.895 45.455 0.00 0.00 0.00 3.67
7143 10948 3.118738 ACCCATAAGATCTCACGACCAAC 60.119 47.826 0.00 0.00 0.00 3.77
7144 10949 3.133003 CCCATAAGATCTCACGACCAACT 59.867 47.826 0.00 0.00 0.00 3.16
7145 10950 4.363999 CCATAAGATCTCACGACCAACTC 58.636 47.826 0.00 0.00 0.00 3.01
7146 10951 4.142160 CCATAAGATCTCACGACCAACTCA 60.142 45.833 0.00 0.00 0.00 3.41
7147 10952 5.452496 CCATAAGATCTCACGACCAACTCAT 60.452 44.000 0.00 0.00 0.00 2.90
7148 10953 3.516981 AGATCTCACGACCAACTCATG 57.483 47.619 0.00 0.00 0.00 3.07
7166 10971 5.125367 TCATGGCTACAGGTCTAGACTTA 57.875 43.478 21.88 10.24 0.00 2.24
7231 11036 5.387113 TTGTATGCCCTCTTGTCCAATAT 57.613 39.130 0.00 0.00 0.00 1.28
7238 11043 7.817418 TGCCCTCTTGTCCAATATAATTAAC 57.183 36.000 0.00 0.00 0.00 2.01
7364 11170 9.884636 AAGGTTAAAAACTTCTTAAAACAGCAT 57.115 25.926 0.00 0.00 0.00 3.79
7644 11451 6.716934 TTAGTTTTGGCCTGTTCACAATAA 57.283 33.333 3.32 0.00 0.00 1.40
7794 11603 1.214589 CACTGCCATGCTTTCAGCC 59.785 57.895 0.00 0.00 41.51 4.85
7833 11642 4.685628 CGTTTGCTGCATTTTGGTCTTTAT 59.314 37.500 1.84 0.00 0.00 1.40
7834 11643 5.177327 CGTTTGCTGCATTTTGGTCTTTATT 59.823 36.000 1.84 0.00 0.00 1.40
7866 11675 0.179073 GTGGCCACTATGTCGAGCAT 60.179 55.000 29.12 5.92 41.42 3.79
7877 11686 3.251479 TGTCGAGCATCAGCACTTAAT 57.749 42.857 0.00 0.00 45.49 1.40
8113 11931 2.995283 TCCAATTCCAGTGCTCTGATG 58.005 47.619 17.19 9.78 43.76 3.07
8184 12006 4.201990 CCAATTCTAGTGCTTCTTCCATGC 60.202 45.833 0.00 0.00 0.00 4.06
8187 12009 0.036483 TAGTGCTTCTTCCATGCGCA 60.036 50.000 14.96 14.96 37.98 6.09
8215 12037 3.046968 TGTAGTGCTCGTAAATGGCAA 57.953 42.857 0.00 0.00 37.73 4.52
8251 12073 2.750948 TCAAGCAAACTCCGTAGTGAC 58.249 47.619 0.00 0.00 35.62 3.67
8263 12085 3.122937 CGTAGTGACGGTACACCTAAC 57.877 52.381 0.00 0.00 45.63 2.34
8293 12115 2.232452 TCTCTCCTACTGCACTTTCAGC 59.768 50.000 0.00 0.00 37.59 4.26
8326 12148 7.342284 TGGTAAAACTGAAATTGAGTTGGGTTA 59.658 33.333 0.00 0.00 33.85 2.85
8342 12264 2.159627 GGGTTAACATTCACAGTCGCTG 59.840 50.000 8.10 5.47 37.52 5.18
8386 12308 3.368539 GGTTTTGAACCGTTTGTTTCACC 59.631 43.478 0.00 0.00 42.62 4.02
8408 12330 1.446966 GCAGAAGAGACACCGGAGC 60.447 63.158 9.46 0.00 0.00 4.70
8443 12365 4.101448 GCGGCATCTCCCACCACT 62.101 66.667 0.00 0.00 0.00 4.00
8521 12446 1.035932 ACGGGATCAGACAGGTACCG 61.036 60.000 6.18 0.00 44.86 4.02
8747 12717 3.019003 AAGTGATCGGCCGGGTGAG 62.019 63.158 27.83 0.00 0.00 3.51
8768 12738 3.437795 CGGGCTTGGCAGAGCTTG 61.438 66.667 17.11 9.19 42.32 4.01
8848 12819 2.802816 CGATGCTGCAGGTCCTAATTAC 59.197 50.000 17.12 0.00 0.00 1.89
8849 12820 3.493350 CGATGCTGCAGGTCCTAATTACT 60.493 47.826 17.12 0.00 0.00 2.24
8850 12821 4.262036 CGATGCTGCAGGTCCTAATTACTA 60.262 45.833 17.12 0.00 0.00 1.82
8851 12822 5.611374 GATGCTGCAGGTCCTAATTACTAA 58.389 41.667 17.12 0.00 0.00 2.24
8852 12823 4.766375 TGCTGCAGGTCCTAATTACTAAC 58.234 43.478 17.12 0.00 0.00 2.34
8854 12825 4.811557 GCTGCAGGTCCTAATTACTAACTG 59.188 45.833 17.12 3.84 0.00 3.16
8855 12826 5.627040 GCTGCAGGTCCTAATTACTAACTGT 60.627 44.000 17.12 0.00 0.00 3.55
8856 12827 6.406624 GCTGCAGGTCCTAATTACTAACTGTA 60.407 42.308 17.12 4.44 0.00 2.74
8857 12828 6.870769 TGCAGGTCCTAATTACTAACTGTAC 58.129 40.000 8.45 0.00 0.00 2.90
8858 12829 6.127253 TGCAGGTCCTAATTACTAACTGTACC 60.127 42.308 8.45 0.00 0.00 3.34
8859 12830 6.127253 GCAGGTCCTAATTACTAACTGTACCA 60.127 42.308 8.45 0.00 0.00 3.25
8860 12831 7.418712 GCAGGTCCTAATTACTAACTGTACCAT 60.419 40.741 8.45 0.00 0.00 3.55
8861 12832 9.139734 CAGGTCCTAATTACTAACTGTACCATA 57.860 37.037 0.00 0.00 0.00 2.74
8890 12882 0.681733 TGGCGAGGGCTAGATTCATC 59.318 55.000 0.00 0.00 39.81 2.92
8900 12892 2.368221 GCTAGATTCATCACCTCCTGCT 59.632 50.000 0.00 0.00 0.00 4.24
8901 12893 3.803021 GCTAGATTCATCACCTCCTGCTG 60.803 52.174 0.00 0.00 0.00 4.41
8902 12894 2.194859 AGATTCATCACCTCCTGCTGT 58.805 47.619 0.00 0.00 0.00 4.40
8903 12895 2.093075 AGATTCATCACCTCCTGCTGTG 60.093 50.000 0.00 0.00 0.00 3.66
8904 12896 0.321919 TTCATCACCTCCTGCTGTGC 60.322 55.000 0.00 0.00 32.51 4.57
8905 12897 1.196766 TCATCACCTCCTGCTGTGCT 61.197 55.000 0.00 0.00 32.51 4.40
8906 12898 1.025113 CATCACCTCCTGCTGTGCTG 61.025 60.000 0.00 0.00 32.51 4.41
8907 12899 2.816601 ATCACCTCCTGCTGTGCTGC 62.817 60.000 0.00 0.00 32.51 5.25
8908 12900 3.563224 ACCTCCTGCTGTGCTGCA 61.563 61.111 0.00 0.00 41.05 4.41
8909 12901 2.045242 CCTCCTGCTGTGCTGCAT 60.045 61.111 5.27 0.00 42.48 3.96
8933 12925 1.142936 TGGATGCTAGCCATGGACAT 58.857 50.000 18.40 12.65 33.29 3.06
8942 12934 1.216175 AGCCATGGACATTGTAGGCAT 59.784 47.619 18.40 6.54 44.34 4.40
9007 13047 6.483307 TGAACAGAGTAACAAGAATGTTCAGG 59.517 38.462 12.97 0.00 46.78 3.86
9010 13050 6.483640 ACAGAGTAACAAGAATGTTCAGGTTC 59.516 38.462 0.00 0.00 46.78 3.62
9045 13086 7.460751 AGTTAACAAGAACGTTTAGTGAGAC 57.539 36.000 8.61 0.00 34.36 3.36
9046 13087 6.197842 AGTTAACAAGAACGTTTAGTGAGACG 59.802 38.462 8.61 0.00 44.34 4.18
9047 13088 2.793232 ACAAGAACGTTTAGTGAGACGC 59.207 45.455 0.46 0.00 42.67 5.19
9048 13089 1.682982 AGAACGTTTAGTGAGACGCG 58.317 50.000 3.53 3.53 42.67 6.01
9049 13090 0.706729 GAACGTTTAGTGAGACGCGG 59.293 55.000 12.47 0.00 42.67 6.46
9051 13092 0.109873 ACGTTTAGTGAGACGCGGAG 60.110 55.000 12.47 0.00 42.67 4.63
9053 13094 1.077089 GTTTAGTGAGACGCGGAGGC 61.077 60.000 12.47 0.00 0.00 4.70
9054 13095 1.248785 TTTAGTGAGACGCGGAGGCT 61.249 55.000 12.47 1.23 44.42 4.58
9055 13096 1.934220 TTAGTGAGACGCGGAGGCTG 61.934 60.000 12.47 0.00 39.26 4.85
9057 13098 2.755876 TGAGACGCGGAGGCTGAT 60.756 61.111 12.47 0.00 39.26 2.90
9058 13099 2.279120 GAGACGCGGAGGCTGATG 60.279 66.667 12.47 0.00 39.26 3.07
9059 13100 4.521062 AGACGCGGAGGCTGATGC 62.521 66.667 12.47 0.00 36.36 3.91
9060 13101 4.521062 GACGCGGAGGCTGATGCT 62.521 66.667 12.47 0.00 39.59 3.79
9061 13102 4.087892 ACGCGGAGGCTGATGCTT 62.088 61.111 12.47 0.00 39.59 3.91
9063 13104 2.796651 GCGGAGGCTGATGCTTTG 59.203 61.111 0.00 0.00 39.59 2.77
9064 13105 2.042831 GCGGAGGCTGATGCTTTGT 61.043 57.895 0.00 0.00 39.59 2.83
9160 15040 2.526873 ACGAGCAAGGGAGTGGGT 60.527 61.111 0.00 0.00 0.00 4.51
9169 15049 0.620556 AGGGAGTGGGTATGTTGCAG 59.379 55.000 0.00 0.00 0.00 4.41
9177 15057 1.369091 GGTATGTTGCAGGCCTGACG 61.369 60.000 37.21 11.05 0.00 4.35
9202 15082 2.600470 GGCAAAAGGGTTCGGGCT 60.600 61.111 0.00 0.00 0.00 5.19
9215 15095 4.050934 GGGCTTTTTCACCCCGCG 62.051 66.667 0.00 0.00 40.56 6.46
9221 15101 1.167781 TTTTTCACCCCGCGGTCTTC 61.168 55.000 26.12 0.00 42.04 2.87
9222 15102 2.047213 TTTTCACCCCGCGGTCTTCT 62.047 55.000 26.12 0.00 42.04 2.85
9229 15109 1.165270 CCCGCGGTCTTCTTTTTCAT 58.835 50.000 26.12 0.00 0.00 2.57
9237 15117 3.829026 GGTCTTCTTTTTCATGGGCTCTT 59.171 43.478 0.00 0.00 0.00 2.85
9240 15120 5.010012 GTCTTCTTTTTCATGGGCTCTTGAA 59.990 40.000 10.70 10.70 35.92 2.69
9262 15142 0.035439 GGGATTCCAAACTCTCCGCA 60.035 55.000 4.80 0.00 0.00 5.69
9265 15145 0.673644 ATTCCAAACTCTCCGCACCG 60.674 55.000 0.00 0.00 0.00 4.94
9266 15146 3.423154 CCAAACTCTCCGCACCGC 61.423 66.667 0.00 0.00 0.00 5.68
9283 15171 0.436150 CGCGTGCATATGATTCCTCG 59.564 55.000 6.97 2.73 0.00 4.63
9319 15207 4.084745 GCAGTCAAGATGTGCACAAATTTG 60.085 41.667 25.72 24.68 37.16 2.32
9321 15209 5.749588 CAGTCAAGATGTGCACAAATTTGAA 59.250 36.000 29.52 18.62 30.83 2.69
9322 15210 5.750067 AGTCAAGATGTGCACAAATTTGAAC 59.250 36.000 29.52 24.48 30.83 3.18
9323 15211 5.519566 GTCAAGATGTGCACAAATTTGAACA 59.480 36.000 29.52 21.96 30.83 3.18
9324 15212 5.749588 TCAAGATGTGCACAAATTTGAACAG 59.250 36.000 27.49 11.69 0.00 3.16
9325 15213 4.624015 AGATGTGCACAAATTTGAACAGG 58.376 39.130 25.72 9.14 0.00 4.00
9326 15214 4.341806 AGATGTGCACAAATTTGAACAGGA 59.658 37.500 25.72 9.48 0.00 3.86
9327 15215 4.044336 TGTGCACAAATTTGAACAGGAG 57.956 40.909 24.64 6.32 0.00 3.69
9328 15216 3.446873 TGTGCACAAATTTGAACAGGAGT 59.553 39.130 24.64 0.00 0.00 3.85
9329 15217 3.798337 GTGCACAAATTTGAACAGGAGTG 59.202 43.478 24.64 10.50 0.00 3.51
9330 15218 3.698539 TGCACAAATTTGAACAGGAGTGA 59.301 39.130 24.64 0.00 0.00 3.41
9331 15219 4.044426 GCACAAATTTGAACAGGAGTGAC 58.956 43.478 24.64 3.27 0.00 3.67
9332 15220 4.282068 CACAAATTTGAACAGGAGTGACG 58.718 43.478 24.64 0.00 0.00 4.35
9333 15221 4.035091 CACAAATTTGAACAGGAGTGACGA 59.965 41.667 24.64 0.00 0.00 4.20
9334 15222 4.035208 ACAAATTTGAACAGGAGTGACGAC 59.965 41.667 24.64 0.00 0.00 4.34
9335 15223 2.234300 TTTGAACAGGAGTGACGACC 57.766 50.000 0.00 0.00 0.00 4.79
9336 15224 1.116308 TTGAACAGGAGTGACGACCA 58.884 50.000 0.00 0.00 0.00 4.02
9337 15225 0.673985 TGAACAGGAGTGACGACCAG 59.326 55.000 0.00 0.00 0.00 4.00
9338 15226 0.667792 GAACAGGAGTGACGACCAGC 60.668 60.000 0.00 0.00 0.00 4.85
9339 15227 1.399744 AACAGGAGTGACGACCAGCA 61.400 55.000 0.00 0.00 0.00 4.41
9340 15228 1.188219 ACAGGAGTGACGACCAGCAT 61.188 55.000 0.00 0.00 0.00 3.79
9341 15229 0.036952 CAGGAGTGACGACCAGCATT 60.037 55.000 0.00 0.00 0.00 3.56
9342 15230 0.687354 AGGAGTGACGACCAGCATTT 59.313 50.000 0.00 0.00 0.00 2.32
9343 15231 0.798776 GGAGTGACGACCAGCATTTG 59.201 55.000 0.00 0.00 0.00 2.32
9361 15249 5.695816 GCATTTGGCAATCTCTACAACAAAA 59.304 36.000 0.00 0.00 43.97 2.44
9363 15251 7.095102 GCATTTGGCAATCTCTACAACAAAAAT 60.095 33.333 0.00 0.00 43.97 1.82
9365 15253 7.945033 TTGGCAATCTCTACAACAAAAATTC 57.055 32.000 0.00 0.00 0.00 2.17
9366 15254 7.288810 TGGCAATCTCTACAACAAAAATTCT 57.711 32.000 0.00 0.00 0.00 2.40
9367 15255 8.402798 TGGCAATCTCTACAACAAAAATTCTA 57.597 30.769 0.00 0.00 0.00 2.10
9368 15256 8.514594 TGGCAATCTCTACAACAAAAATTCTAG 58.485 33.333 0.00 0.00 0.00 2.43
9461 15355 4.469657 TCAAGAGCCACCACTACAAAAAT 58.530 39.130 0.00 0.00 0.00 1.82
9462 15356 5.626142 TCAAGAGCCACCACTACAAAAATA 58.374 37.500 0.00 0.00 0.00 1.40
9463 15357 5.705441 TCAAGAGCCACCACTACAAAAATAG 59.295 40.000 0.00 0.00 0.00 1.73
9538 15434 4.270834 CACTACTAGCCTCTACCAGAACA 58.729 47.826 0.00 0.00 0.00 3.18
9606 15502 5.301551 ACTGCAACTGTCAACATAAATTCCA 59.698 36.000 0.00 0.00 0.00 3.53
9629 15526 7.666388 TCCATTTTCCTTTCGTTTCTGGTATTA 59.334 33.333 0.00 0.00 0.00 0.98
9668 15565 6.838382 AGTAGAAAACAACATGTTAGGACCT 58.162 36.000 11.53 8.68 40.14 3.85
9677 15574 7.402054 ACAACATGTTAGGACCTAATGATGAA 58.598 34.615 27.43 10.58 30.26 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
480 503 9.026074 CCGCTTTTTCTGTTTTATTCAGTTTTA 57.974 29.630 0.00 0.00 34.86 1.52
481 504 7.547722 ACCGCTTTTTCTGTTTTATTCAGTTTT 59.452 29.630 0.00 0.00 34.86 2.43
511 534 9.665264 CCGATTAATGTAAAAGAGCCTATTTTC 57.335 33.333 0.00 0.00 32.38 2.29
512 535 9.403583 TCCGATTAATGTAAAAGAGCCTATTTT 57.596 29.630 2.29 2.29 34.40 1.82
542 565 8.507249 GCTTCTGTCTGTACTGATGTTTAAAAT 58.493 33.333 5.69 0.00 34.05 1.82
546 569 5.161358 CGCTTCTGTCTGTACTGATGTTTA 58.839 41.667 5.69 0.00 34.05 2.01
547 570 3.990469 CGCTTCTGTCTGTACTGATGTTT 59.010 43.478 5.69 0.00 34.05 2.83
561 585 4.053983 CACATGTATATGAGCGCTTCTGT 58.946 43.478 13.26 2.72 37.73 3.41
564 588 3.446184 GCACATGTATATGAGCGCTTC 57.554 47.619 13.26 5.55 40.23 3.86
581 605 5.483685 TTCATAGGGGTGAGTATATGCAC 57.516 43.478 0.00 0.00 0.00 4.57
582 606 5.513094 GCTTTCATAGGGGTGAGTATATGCA 60.513 44.000 0.00 0.00 0.00 3.96
608 632 4.373116 AGGTAGGGTGCGCGTGTG 62.373 66.667 8.43 0.00 0.00 3.82
613 637 0.315568 CTCATAGAGGTAGGGTGCGC 59.684 60.000 0.00 0.00 0.00 6.09
615 639 1.069358 GTGCTCATAGAGGTAGGGTGC 59.931 57.143 0.00 0.00 0.00 5.01
616 640 1.689273 GGTGCTCATAGAGGTAGGGTG 59.311 57.143 0.00 0.00 0.00 4.61
620 644 4.944619 TCAATGGTGCTCATAGAGGTAG 57.055 45.455 0.00 0.00 34.44 3.18
625 649 5.046376 TCAGTCTTTCAATGGTGCTCATAGA 60.046 40.000 0.00 0.00 34.44 1.98
637 661 1.000955 ACGACGGCTCAGTCTTTCAAT 59.999 47.619 0.00 0.00 38.90 2.57
639 663 1.241165 TACGACGGCTCAGTCTTTCA 58.759 50.000 0.00 0.00 38.90 2.69
646 670 5.712217 TTTAAAATGATACGACGGCTCAG 57.288 39.130 0.00 0.00 0.00 3.35
679 703 0.098376 CGACGAGGTGCCTACAGTAC 59.902 60.000 0.00 0.00 0.00 2.73
680 704 0.321919 ACGACGAGGTGCCTACAGTA 60.322 55.000 0.00 0.00 0.00 2.74
682 706 1.136984 GACGACGAGGTGCCTACAG 59.863 63.158 0.00 0.00 0.00 2.74
683 707 1.174078 TTGACGACGAGGTGCCTACA 61.174 55.000 0.00 0.00 0.00 2.74
684 708 0.731855 GTTGACGACGAGGTGCCTAC 60.732 60.000 0.00 0.00 0.00 3.18
704 728 0.528470 CAGTGGGAGGAGACGTTCTC 59.472 60.000 0.00 0.00 42.66 2.87
706 730 1.134965 CATCAGTGGGAGGAGACGTTC 60.135 57.143 0.00 0.00 0.00 3.95
798 957 0.773644 AAACTGACATGGCCCAGTCT 59.226 50.000 21.10 3.40 42.25 3.24
1237 1408 5.451798 GGAAAGTAAGGAGCTCATCTCAGAG 60.452 48.000 17.19 0.00 43.70 3.35
1240 1411 4.357325 AGGAAAGTAAGGAGCTCATCTCA 58.643 43.478 17.19 0.00 43.70 3.27
1282 1454 4.878397 CGAATTCCCATGCCTCCTTATATC 59.122 45.833 0.00 0.00 0.00 1.63
1330 1503 1.771255 GCTAGGACCATCCACCAATCT 59.229 52.381 0.00 0.00 39.61 2.40
1346 1527 3.058983 TGACAGCATTCAACAAACGCTAG 60.059 43.478 0.00 0.00 0.00 3.42
1733 1924 3.375922 AGAAAACATATAACGCCGTTGGG 59.624 43.478 13.65 1.74 0.00 4.12
1856 2047 1.631405 CAAATGCAAAGGACCTCCCA 58.369 50.000 0.00 0.00 37.41 4.37
1861 2054 1.686052 TGTCACCAAATGCAAAGGACC 59.314 47.619 9.15 0.00 0.00 4.46
1999 2194 6.119536 TCCTAGCACAAAATGATATTTCCGT 58.880 36.000 0.00 0.00 0.00 4.69
2017 2294 6.279513 ACTAATGTCTCATATGCTCCTAGC 57.720 41.667 0.00 0.00 42.82 3.42
2056 2333 4.512571 GGTAACACCGTAACAGAACACAAT 59.487 41.667 0.00 0.00 0.00 2.71
2072 2349 5.642491 GGTAGATTCCAAGAACAGGTAACAC 59.358 44.000 0.00 0.00 41.41 3.32
2238 2593 4.048504 GGACAACACCAAAATAACAGCAC 58.951 43.478 0.00 0.00 0.00 4.40
2251 2606 2.038557 ACACATAGTCAGGGACAACACC 59.961 50.000 0.00 0.00 34.60 4.16
2353 2760 4.371855 TGATAGCCAGACAGTAAAGTCG 57.628 45.455 0.00 0.00 43.24 4.18
2371 2778 2.172293 GGAAGAGCCCTCAACTGATGAT 59.828 50.000 0.00 0.00 37.44 2.45
2428 2836 4.130286 AGAGGAAAGAGGTTGCTAATCG 57.870 45.455 0.00 0.00 38.15 3.34
2460 2868 5.771666 TGAGAAGATGATCAAAGCCTTTTGT 59.228 36.000 0.00 0.00 43.33 2.83
2503 2911 8.980481 ACAGCCAAAGCATATACTAAATTACT 57.020 30.769 0.00 0.00 43.56 2.24
2516 2924 4.344104 ACCACTAAATACAGCCAAAGCAT 58.656 39.130 0.00 0.00 43.56 3.79
2595 3003 1.002868 CTGGGGAAGACCTGCTGTG 60.003 63.158 0.00 0.00 40.03 3.66
2628 3036 1.019673 CCTCATTGTCGCTTCCATGG 58.980 55.000 4.97 4.97 0.00 3.66
2649 3057 7.810658 ACTGATTGTTAACAGAGTAGCAATTG 58.189 34.615 8.56 0.00 35.71 2.32
2650 3058 7.661437 TGACTGATTGTTAACAGAGTAGCAATT 59.339 33.333 8.56 0.00 35.71 2.32
2669 3077 8.950210 CAAATTTAGTAGGTGTGATTGACTGAT 58.050 33.333 0.00 0.00 0.00 2.90
2670 3078 7.094805 GCAAATTTAGTAGGTGTGATTGACTGA 60.095 37.037 0.00 0.00 0.00 3.41
2673 3081 7.145932 AGCAAATTTAGTAGGTGTGATTGAC 57.854 36.000 0.00 0.00 0.00 3.18
2674 3082 9.109393 GATAGCAAATTTAGTAGGTGTGATTGA 57.891 33.333 0.00 0.00 0.00 2.57
2675 3083 8.892723 TGATAGCAAATTTAGTAGGTGTGATTG 58.107 33.333 0.00 0.00 0.00 2.67
2676 3084 9.632638 ATGATAGCAAATTTAGTAGGTGTGATT 57.367 29.630 0.00 0.00 0.00 2.57
2871 3279 9.971922 CCTCAAGACTCAAATTAACAAGAAAAT 57.028 29.630 0.00 0.00 0.00 1.82
3268 3680 5.559770 TGCCACTCATCTTTCTGTTCATTA 58.440 37.500 0.00 0.00 0.00 1.90
3465 3878 0.725117 ACGCACAATTAACGCCTAGC 59.275 50.000 0.00 0.00 0.00 3.42
3466 3879 3.465122 AAACGCACAATTAACGCCTAG 57.535 42.857 0.00 0.00 0.00 3.02
3467 3880 3.556513 CAAAACGCACAATTAACGCCTA 58.443 40.909 0.00 0.00 0.00 3.93
3468 3881 2.389998 CAAAACGCACAATTAACGCCT 58.610 42.857 0.00 0.00 0.00 5.52
3469 3882 1.136748 GCAAAACGCACAATTAACGCC 60.137 47.619 0.00 0.00 41.79 5.68
3470 3883 1.136748 GGCAAAACGCACAATTAACGC 60.137 47.619 0.00 0.00 45.17 4.84
3471 3884 2.097637 GTGGCAAAACGCACAATTAACG 60.098 45.455 0.00 0.00 45.17 3.18
3472 3885 2.219903 GGTGGCAAAACGCACAATTAAC 59.780 45.455 0.00 0.00 45.17 2.01
3473 3886 2.474816 GGTGGCAAAACGCACAATTAA 58.525 42.857 0.00 0.00 45.17 1.40
3474 3887 1.600663 CGGTGGCAAAACGCACAATTA 60.601 47.619 0.00 0.00 45.17 1.40
3475 3888 0.873743 CGGTGGCAAAACGCACAATT 60.874 50.000 0.00 0.00 45.17 2.32
3476 3889 1.299773 CGGTGGCAAAACGCACAAT 60.300 52.632 0.00 0.00 45.17 2.71
3477 3890 2.103143 CGGTGGCAAAACGCACAA 59.897 55.556 0.00 0.00 45.17 3.33
3482 3895 2.354539 CAAGGCGGTGGCAAAACG 60.355 61.111 0.00 0.00 42.47 3.60
3483 3896 2.661537 GCAAGGCGGTGGCAAAAC 60.662 61.111 0.00 0.00 42.47 2.43
3494 3907 1.234615 TGGTCAGTAAAGCGCAAGGC 61.235 55.000 11.47 0.00 44.05 4.35
3495 3908 1.234821 TTGGTCAGTAAAGCGCAAGG 58.765 50.000 11.47 0.00 38.28 3.61
3496 3909 2.921126 CTTTGGTCAGTAAAGCGCAAG 58.079 47.619 11.47 0.00 43.44 4.01
3502 3915 2.855180 CATGCGCTTTGGTCAGTAAAG 58.145 47.619 9.73 0.00 38.00 1.85
3503 3916 1.068610 GCATGCGCTTTGGTCAGTAAA 60.069 47.619 9.73 0.00 34.30 2.01
3504 3917 0.521291 GCATGCGCTTTGGTCAGTAA 59.479 50.000 9.73 0.00 34.30 2.24
3505 3918 2.170738 GCATGCGCTTTGGTCAGTA 58.829 52.632 9.73 0.00 34.30 2.74
3506 3919 2.956987 GCATGCGCTTTGGTCAGT 59.043 55.556 9.73 0.00 34.30 3.41
3519 3932 3.231965 GCTTAATCTGCGCATAAGCATG 58.768 45.455 33.42 14.95 46.73 4.06
3520 3933 3.549299 GCTTAATCTGCGCATAAGCAT 57.451 42.857 33.42 13.90 46.73 3.79
3523 3936 3.950087 TGTGCTTAATCTGCGCATAAG 57.050 42.857 20.04 20.04 44.53 1.73
3527 3940 1.522668 AACTGTGCTTAATCTGCGCA 58.477 45.000 10.98 10.98 46.74 6.09
3528 3941 3.611517 CATAACTGTGCTTAATCTGCGC 58.388 45.455 0.00 0.00 40.87 6.09
3529 3942 3.611517 GCATAACTGTGCTTAATCTGCG 58.388 45.455 0.00 0.00 41.82 5.18
3530 3943 3.611517 CGCATAACTGTGCTTAATCTGC 58.388 45.455 0.00 0.00 42.88 4.26
3557 3970 0.165944 CTCTAGGCGTTGGCAAAACG 59.834 55.000 16.88 16.88 45.56 3.60
3558 3971 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43
3559 3972 1.241315 GGCTCTAGGCGTTGGCAAAA 61.241 55.000 0.00 0.00 42.47 2.44
3560 3973 1.674322 GGCTCTAGGCGTTGGCAAA 60.674 57.895 0.00 0.00 42.47 3.68
3561 3974 1.261938 TAGGCTCTAGGCGTTGGCAA 61.262 55.000 0.00 0.00 46.23 4.52
3562 3975 1.676678 CTAGGCTCTAGGCGTTGGCA 61.677 60.000 0.00 0.00 46.23 4.92
3563 3976 1.068250 CTAGGCTCTAGGCGTTGGC 59.932 63.158 0.00 0.00 46.23 4.52
3564 3977 1.742768 CCTAGGCTCTAGGCGTTGG 59.257 63.158 13.35 10.22 46.23 3.77
3570 3983 4.350441 GCGCGCCTAGGCTCTAGG 62.350 72.222 30.55 16.12 39.32 3.02
3571 3984 3.291383 AGCGCGCCTAGGCTCTAG 61.291 66.667 30.55 18.84 39.32 2.43
3575 3988 4.521062 CTTGAGCGCGCCTAGGCT 62.521 66.667 30.55 12.89 43.42 4.58
3576 3989 4.821589 ACTTGAGCGCGCCTAGGC 62.822 66.667 30.33 24.75 37.85 3.93
3577 3990 2.887568 CACTTGAGCGCGCCTAGG 60.888 66.667 30.33 19.69 0.00 3.02
3578 3991 3.558411 GCACTTGAGCGCGCCTAG 61.558 66.667 30.33 25.02 0.00 3.02
3579 3992 3.989698 GAGCACTTGAGCGCGCCTA 62.990 63.158 30.33 14.98 40.15 3.93
3585 3998 1.416813 CCTAAGCGAGCACTTGAGCG 61.417 60.000 0.00 0.00 40.15 5.03
3586 3999 0.390472 ACCTAAGCGAGCACTTGAGC 60.390 55.000 0.00 0.00 0.00 4.26
3587 4000 1.354040 CACCTAAGCGAGCACTTGAG 58.646 55.000 0.00 0.00 0.00 3.02
3588 4001 0.670546 GCACCTAAGCGAGCACTTGA 60.671 55.000 0.00 0.00 0.00 3.02
3589 4002 1.790387 GCACCTAAGCGAGCACTTG 59.210 57.895 0.00 0.00 0.00 3.16
3590 4003 4.285851 GCACCTAAGCGAGCACTT 57.714 55.556 0.00 0.00 0.00 3.16
3617 4030 9.169592 GCAATAAACTCCTGTGGTAATTAGTTA 57.830 33.333 0.00 0.00 0.00 2.24
3618 4031 7.888546 AGCAATAAACTCCTGTGGTAATTAGTT 59.111 33.333 0.00 0.00 0.00 2.24
3619 4032 7.402862 AGCAATAAACTCCTGTGGTAATTAGT 58.597 34.615 0.00 0.00 0.00 2.24
3620 4033 7.865706 AGCAATAAACTCCTGTGGTAATTAG 57.134 36.000 0.00 0.00 0.00 1.73
3621 4034 7.122055 CCAAGCAATAAACTCCTGTGGTAATTA 59.878 37.037 0.00 0.00 0.00 1.40
3622 4035 6.071391 CCAAGCAATAAACTCCTGTGGTAATT 60.071 38.462 0.00 0.00 0.00 1.40
3623 4036 5.418840 CCAAGCAATAAACTCCTGTGGTAAT 59.581 40.000 0.00 0.00 0.00 1.89
3624 4037 4.764823 CCAAGCAATAAACTCCTGTGGTAA 59.235 41.667 0.00 0.00 0.00 2.85
3625 4038 4.331968 CCAAGCAATAAACTCCTGTGGTA 58.668 43.478 0.00 0.00 0.00 3.25
3626 4039 3.157087 CCAAGCAATAAACTCCTGTGGT 58.843 45.455 0.00 0.00 0.00 4.16
3627 4040 2.493278 CCCAAGCAATAAACTCCTGTGG 59.507 50.000 0.00 0.00 0.00 4.17
3762 4175 8.709386 ACATGCAACACAAACATAACTAAAAA 57.291 26.923 0.00 0.00 0.00 1.94
3838 4253 7.315890 GCTAAGTTCCATTGCTAACTCAATTT 58.684 34.615 3.88 0.00 34.91 1.82
3953 4383 2.559998 AAGGCAACAACGTTTGACAG 57.440 45.000 8.48 0.00 36.91 3.51
4099 4539 1.927895 GCAGTATGACAGGAGAACGG 58.072 55.000 0.00 0.00 39.69 4.44
4307 4795 1.009829 CTAGTTTGCATGGCGTCCTC 58.990 55.000 0.00 0.00 0.00 3.71
4676 5175 7.093322 ACTTGCAGATGAAAAATAGGATGAC 57.907 36.000 0.00 0.00 0.00 3.06
4714 5213 7.444183 CGACAATACTATTTCCCAACCATATGT 59.556 37.037 1.24 0.00 0.00 2.29
4726 5225 9.859692 GCAAAGGTATAACGACAATACTATTTC 57.140 33.333 0.00 0.00 31.71 2.17
4909 5561 7.182206 AGGAACCTTAAATCTCTAACTGGCTTA 59.818 37.037 0.00 0.00 0.00 3.09
5012 5708 8.814038 ATAATACCATTTCAACAGAAAGCTCT 57.186 30.769 0.00 0.00 34.96 4.09
5013 5709 8.131731 GGATAATACCATTTCAACAGAAAGCTC 58.868 37.037 0.00 0.00 34.96 4.09
5324 6029 5.064441 CATTCCTTCAAGAATGTCAACCC 57.936 43.478 6.17 0.00 45.30 4.11
5536 6251 3.243907 ACTTCAAGCGAGTAAACAGCTCT 60.244 43.478 4.07 0.00 40.78 4.09
5602 6317 4.929819 ACCCGTTTCTTTAGTTTTGCAT 57.070 36.364 0.00 0.00 0.00 3.96
5611 6335 7.040340 TGCTGATTTATTCAACCCGTTTCTTTA 60.040 33.333 0.00 0.00 32.78 1.85
5649 6373 7.411486 AACAGACATAGCTCACTACATTACT 57.589 36.000 0.00 0.00 0.00 2.24
5678 6416 8.561738 TTTGATTAGTTGGTTTAGGAGATGTC 57.438 34.615 0.00 0.00 0.00 3.06
5797 6544 8.506083 AGGTTTATGGATCAATAACTCCAAGAT 58.494 33.333 18.20 3.29 44.41 2.40
6356 9941 7.328982 TCGTCTTTGGTTTTGGTTTTTCTTTAC 59.671 33.333 0.00 0.00 0.00 2.01
6514 10141 9.999009 GAGATACATGCATCATATATGTTTTGG 57.001 33.333 12.42 2.84 36.52 3.28
6580 10212 9.328845 AGCATTTAATGTTCAAGATTGTTTTGT 57.671 25.926 6.81 0.00 0.00 2.83
6612 10244 7.884877 TCTCCAAGTCATGATTTCACTAACATT 59.115 33.333 0.00 0.00 0.00 2.71
6616 10248 8.868522 AAATCTCCAAGTCATGATTTCACTAA 57.131 30.769 0.00 0.00 35.11 2.24
6650 10282 9.097257 TCCTTTTGCAATTTAAAACTTCTGAAG 57.903 29.630 15.59 15.59 0.00 3.02
6666 10300 4.727507 TGTTAGTTGCTTCCTTTTGCAA 57.272 36.364 0.00 0.00 45.40 4.08
6722 10356 4.081309 TGTTGGTTCCTGCTACTATACACC 60.081 45.833 0.00 0.00 0.00 4.16
6817 10459 3.990959 TGTGATGGCATGGTTGTACTA 57.009 42.857 3.81 0.00 0.00 1.82
6818 10460 2.877097 TGTGATGGCATGGTTGTACT 57.123 45.000 3.81 0.00 0.00 2.73
6819 10461 5.299028 TGAATATGTGATGGCATGGTTGTAC 59.701 40.000 3.81 0.00 0.00 2.90
6936 10580 7.436080 GTGGTATAATCAAGATGCCATTTTGTG 59.564 37.037 7.71 0.00 40.59 3.33
7016 10821 1.078709 CACCCATGTTACGAGCACAG 58.921 55.000 0.00 0.00 0.00 3.66
7059 10864 5.164002 GGCTTTGTTGTTGTTGTTGTTGTAG 60.164 40.000 0.00 0.00 0.00 2.74
7060 10865 4.686554 GGCTTTGTTGTTGTTGTTGTTGTA 59.313 37.500 0.00 0.00 0.00 2.41
7061 10866 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
7062 10867 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
7063 10868 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
7064 10869 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
7065 10870 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
7066 10871 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
7067 10872 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
7068 10873 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
7069 10874 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
7070 10875 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
7071 10876 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
7072 10877 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
7073 10878 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
7074 10879 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
7075 10880 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
7076 10881 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
7077 10882 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
7078 10883 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
7079 10884 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
7080 10885 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
7081 10886 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
7092 10897 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
7093 10898 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
7094 10899 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
7095 10900 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
7096 10901 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
7097 10902 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
7098 10903 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
7099 10904 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
7100 10905 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
7101 10906 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
7102 10907 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
7103 10908 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
7104 10909 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
7105 10910 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
7106 10911 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
7107 10912 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
7108 10913 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
7109 10914 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
7110 10915 6.325028 TGAGATCTTATGGGTTTCACCTCTAG 59.675 42.308 0.00 0.00 38.64 2.43
7111 10916 6.098409 GTGAGATCTTATGGGTTTCACCTCTA 59.902 42.308 0.00 0.00 38.64 2.43
7112 10917 5.032846 TGAGATCTTATGGGTTTCACCTCT 58.967 41.667 0.00 0.00 38.64 3.69
7113 10918 5.119694 GTGAGATCTTATGGGTTTCACCTC 58.880 45.833 0.00 0.00 38.64 3.85
7114 10919 4.383118 CGTGAGATCTTATGGGTTTCACCT 60.383 45.833 0.00 0.00 38.64 4.00
7115 10920 3.871594 CGTGAGATCTTATGGGTTTCACC 59.128 47.826 0.00 0.00 37.60 4.02
7116 10921 4.567159 GTCGTGAGATCTTATGGGTTTCAC 59.433 45.833 6.85 2.02 45.19 3.18
7117 10922 4.382685 GGTCGTGAGATCTTATGGGTTTCA 60.383 45.833 6.85 0.00 45.19 2.69
7118 10923 4.120589 GGTCGTGAGATCTTATGGGTTTC 58.879 47.826 6.85 0.00 45.19 2.78
7119 10924 3.517901 TGGTCGTGAGATCTTATGGGTTT 59.482 43.478 6.85 0.00 43.23 3.27
7120 10925 3.104512 TGGTCGTGAGATCTTATGGGTT 58.895 45.455 6.85 0.00 43.23 4.11
7121 10926 2.747177 TGGTCGTGAGATCTTATGGGT 58.253 47.619 6.85 0.00 43.23 4.51
7122 10927 3.133003 AGTTGGTCGTGAGATCTTATGGG 59.867 47.826 6.85 0.00 43.23 4.00
7123 10928 4.142160 TGAGTTGGTCGTGAGATCTTATGG 60.142 45.833 6.85 0.00 43.23 2.74
7124 10929 4.998788 TGAGTTGGTCGTGAGATCTTATG 58.001 43.478 0.00 0.00 43.23 1.90
7125 10930 5.452496 CCATGAGTTGGTCGTGAGATCTTAT 60.452 44.000 0.00 0.00 44.07 1.73
7126 10931 4.142160 CCATGAGTTGGTCGTGAGATCTTA 60.142 45.833 0.00 0.00 44.07 2.10
7127 10932 3.368843 CCATGAGTTGGTCGTGAGATCTT 60.369 47.826 0.00 0.00 44.07 2.40
7128 10933 2.167281 CCATGAGTTGGTCGTGAGATCT 59.833 50.000 0.00 0.00 44.07 2.75
7129 10934 2.544685 CCATGAGTTGGTCGTGAGATC 58.455 52.381 0.00 0.00 44.07 2.75
7130 10935 2.680312 CCATGAGTTGGTCGTGAGAT 57.320 50.000 0.00 0.00 44.07 2.75
7140 10945 3.701542 TCTAGACCTGTAGCCATGAGTTG 59.298 47.826 0.00 0.00 0.00 3.16
7141 10946 3.702045 GTCTAGACCTGTAGCCATGAGTT 59.298 47.826 12.13 0.00 0.00 3.01
7142 10947 3.053245 AGTCTAGACCTGTAGCCATGAGT 60.053 47.826 19.38 0.00 0.00 3.41
7143 10948 3.561143 AGTCTAGACCTGTAGCCATGAG 58.439 50.000 19.38 0.00 0.00 2.90
7144 10949 3.671740 AGTCTAGACCTGTAGCCATGA 57.328 47.619 19.38 0.00 0.00 3.07
7145 10950 6.717540 ACTATAAGTCTAGACCTGTAGCCATG 59.282 42.308 19.38 0.40 0.00 3.66
7146 10951 6.854578 ACTATAAGTCTAGACCTGTAGCCAT 58.145 40.000 19.38 0.84 0.00 4.40
7147 10952 6.263412 ACTATAAGTCTAGACCTGTAGCCA 57.737 41.667 19.38 0.00 0.00 4.75
7148 10953 7.337436 CCATACTATAAGTCTAGACCTGTAGCC 59.663 44.444 19.38 0.00 0.00 3.93
7149 10954 7.884354 ACCATACTATAAGTCTAGACCTGTAGC 59.116 40.741 19.38 0.00 0.00 3.58
7231 11036 9.101325 ACTATTGGCAGGATAGCTAGTTAATTA 57.899 33.333 0.00 0.00 31.67 1.40
7238 11043 6.754209 CGAATAACTATTGGCAGGATAGCTAG 59.246 42.308 0.00 0.00 31.67 3.42
7250 11055 6.920569 AACTAAGCACCGAATAACTATTGG 57.079 37.500 0.00 0.00 0.00 3.16
7364 11170 5.450453 AGATTTCTTCTACGATCCCTCTGA 58.550 41.667 0.00 0.00 30.96 3.27
7408 11215 4.807834 CGTCATTGAGATGTAACAGCAGAT 59.192 41.667 0.00 0.00 34.77 2.90
7644 11451 8.571336 GGTCACTGCTGCATAGATAAATAATTT 58.429 33.333 1.31 0.00 0.00 1.82
7794 11603 4.088648 GCAAACGATCGACTAATTGTTGG 58.911 43.478 24.34 1.21 34.24 3.77
7839 11648 3.674997 GACATAGTGGCCACAGAAGAAA 58.325 45.455 36.39 13.30 0.00 2.52
7866 11675 8.132995 CAGAATTTCATGCATATTAAGTGCTGA 58.867 33.333 14.44 12.33 42.92 4.26
8113 11931 3.336138 AAGCTAAACAGAGCCCACTAC 57.664 47.619 0.00 0.00 43.97 2.73
8184 12006 3.062099 ACGAGCACTACATATGTTTTGCG 59.938 43.478 24.59 17.90 38.71 4.85
8187 12009 7.678690 GCCATTTACGAGCACTACATATGTTTT 60.679 37.037 14.77 0.00 0.00 2.43
8215 12037 7.933033 AGTTTGCTTGAAAATTTGGTACATGAT 59.067 29.630 0.00 0.00 39.30 2.45
8251 12073 3.247006 AGCATCTTGTTAGGTGTACCG 57.753 47.619 0.00 0.00 42.08 4.02
8263 12085 3.118847 TGCAGTAGGAGAGAAGCATCTTG 60.119 47.826 0.00 0.00 35.54 3.02
8293 12115 9.458374 ACTCAATTTCAGTTTTACCATTTTACG 57.542 29.630 0.00 0.00 0.00 3.18
8326 12148 2.545526 CAGTTCAGCGACTGTGAATGTT 59.454 45.455 9.02 0.00 41.62 2.71
8342 12264 4.034510 CCATCCACGCTTAGATTTCAGTTC 59.965 45.833 0.00 0.00 0.00 3.01
8386 12308 2.091112 CGGTGTCTCTTCTGCTGCG 61.091 63.158 0.00 0.00 0.00 5.18
8408 12330 1.078426 CCTTGGTTACCTGCTCCGG 60.078 63.158 2.07 0.00 0.00 5.14
8443 12365 1.870580 CGCTTGTTGGACCGTGAGTTA 60.871 52.381 0.00 0.00 0.00 2.24
8521 12446 0.248843 CACACTCTGCCTCCTCCTTC 59.751 60.000 0.00 0.00 0.00 3.46
8757 12727 1.032014 GACCAAAACAAGCTCTGCCA 58.968 50.000 0.00 0.00 0.00 4.92
8759 12729 1.949525 TCTGACCAAAACAAGCTCTGC 59.050 47.619 0.00 0.00 0.00 4.26
8762 12732 3.365767 GCTGATCTGACCAAAACAAGCTC 60.366 47.826 3.42 0.00 0.00 4.09
8765 12735 3.057736 CCAGCTGATCTGACCAAAACAAG 60.058 47.826 17.39 0.00 45.72 3.16
8768 12738 1.200948 GCCAGCTGATCTGACCAAAAC 59.799 52.381 17.39 0.00 45.72 2.43
8829 12800 5.131142 AGTTAGTAATTAGGACCTGCAGCAT 59.869 40.000 8.66 0.00 0.00 3.79
8858 12829 3.801698 CCCTCGCCATCTCCATTATATG 58.198 50.000 0.00 0.00 0.00 1.78
8859 12830 2.171448 GCCCTCGCCATCTCCATTATAT 59.829 50.000 0.00 0.00 0.00 0.86
8860 12831 1.555075 GCCCTCGCCATCTCCATTATA 59.445 52.381 0.00 0.00 0.00 0.98
8861 12832 0.326264 GCCCTCGCCATCTCCATTAT 59.674 55.000 0.00 0.00 0.00 1.28
8875 12867 2.301583 GGAGGTGATGAATCTAGCCCTC 59.698 54.545 0.00 0.00 0.00 4.30
8907 12899 3.442625 CCATGGCTAGCATCCACAATATG 59.557 47.826 18.24 6.21 36.26 1.78
8908 12900 3.331591 TCCATGGCTAGCATCCACAATAT 59.668 43.478 18.24 0.00 36.26 1.28
8909 12901 2.710471 TCCATGGCTAGCATCCACAATA 59.290 45.455 18.24 0.00 36.26 1.90
8933 12925 2.635714 CATCACTGCTCATGCCTACAA 58.364 47.619 0.00 0.00 38.71 2.41
8959 12951 1.608590 CCTTCACAAAACATCAGCCGT 59.391 47.619 0.00 0.00 0.00 5.68
9019 13060 9.023967 GTCTCACTAAACGTTCTTGTTAACTTA 57.976 33.333 0.00 0.00 0.00 2.24
9033 13074 0.797249 CCTCCGCGTCTCACTAAACG 60.797 60.000 4.92 0.00 41.68 3.60
9037 13078 2.045242 AGCCTCCGCGTCTCACTA 60.045 61.111 4.92 0.00 41.18 2.74
9041 13082 2.279120 CATCAGCCTCCGCGTCTC 60.279 66.667 4.92 0.00 41.18 3.36
9042 13083 4.521062 GCATCAGCCTCCGCGTCT 62.521 66.667 4.92 0.00 41.18 4.18
9043 13084 4.521062 AGCATCAGCCTCCGCGTC 62.521 66.667 4.92 0.00 43.56 5.19
9045 13086 2.821366 AAAGCATCAGCCTCCGCG 60.821 61.111 0.00 0.00 43.56 6.46
9046 13087 2.042831 ACAAAGCATCAGCCTCCGC 61.043 57.895 0.00 0.00 43.56 5.54
9047 13088 1.798735 CACAAAGCATCAGCCTCCG 59.201 57.895 0.00 0.00 43.56 4.63
9048 13089 1.509923 GCACAAAGCATCAGCCTCC 59.490 57.895 0.00 0.00 44.79 4.30
9057 13098 7.683360 TCAATGTTGATCTAGTGCACAAAGCA 61.683 38.462 21.04 9.76 41.07 3.91
9058 13099 4.691860 ATGTTGATCTAGTGCACAAAGC 57.308 40.909 21.04 7.03 45.96 3.51
9059 13100 6.245115 TCAATGTTGATCTAGTGCACAAAG 57.755 37.500 21.04 15.79 31.01 2.77
9060 13101 5.181811 CCTCAATGTTGATCTAGTGCACAAA 59.818 40.000 21.04 5.62 36.46 2.83
9061 13102 4.696877 CCTCAATGTTGATCTAGTGCACAA 59.303 41.667 21.04 4.16 36.46 3.33
9063 13104 3.624861 CCCTCAATGTTGATCTAGTGCAC 59.375 47.826 9.40 9.40 36.46 4.57
9064 13105 3.370846 CCCCTCAATGTTGATCTAGTGCA 60.371 47.826 0.00 0.00 36.46 4.57
9077 14957 3.830192 GCAAGCGCCCCCTCAATG 61.830 66.667 2.29 0.00 0.00 2.82
9160 15040 1.078497 CCGTCAGGCCTGCAACATA 60.078 57.895 28.91 6.68 0.00 2.29
9215 15095 3.425659 AGAGCCCATGAAAAAGAAGACC 58.574 45.455 0.00 0.00 0.00 3.85
9221 15101 4.553323 CAGTTCAAGAGCCCATGAAAAAG 58.447 43.478 0.00 0.00 37.31 2.27
9222 15102 3.321682 CCAGTTCAAGAGCCCATGAAAAA 59.678 43.478 0.00 0.00 37.31 1.94
9229 15109 1.004745 GAATCCCAGTTCAAGAGCCCA 59.995 52.381 0.00 0.00 0.00 5.36
9237 15117 3.244911 GGAGAGTTTGGAATCCCAGTTCA 60.245 47.826 0.00 0.00 44.60 3.18
9240 15120 1.279271 CGGAGAGTTTGGAATCCCAGT 59.721 52.381 0.00 0.00 44.60 4.00
9262 15142 0.106708 AGGAATCATATGCACGCGGT 59.893 50.000 12.47 0.00 0.00 5.68
9265 15145 1.783284 TCGAGGAATCATATGCACGC 58.217 50.000 0.00 0.00 0.00 5.34
9266 15146 2.093310 GCATCGAGGAATCATATGCACG 59.907 50.000 0.00 0.00 41.94 5.34
9267 15147 2.417933 GGCATCGAGGAATCATATGCAC 59.582 50.000 0.00 0.00 43.67 4.57
9268 15148 2.038820 TGGCATCGAGGAATCATATGCA 59.961 45.455 0.00 0.00 43.67 3.96
9269 15149 2.703416 TGGCATCGAGGAATCATATGC 58.297 47.619 0.00 0.00 41.69 3.14
9270 15150 6.036844 CAGTAATGGCATCGAGGAATCATATG 59.963 42.308 0.00 0.00 0.00 1.78
9271 15151 6.111382 CAGTAATGGCATCGAGGAATCATAT 58.889 40.000 0.00 0.00 0.00 1.78
9272 15152 5.482006 CAGTAATGGCATCGAGGAATCATA 58.518 41.667 0.00 0.00 0.00 2.15
9274 15154 3.494924 CCAGTAATGGCATCGAGGAATCA 60.495 47.826 0.00 0.00 0.00 2.57
9319 15207 0.667792 GCTGGTCGTCACTCCTGTTC 60.668 60.000 0.00 0.00 0.00 3.18
9321 15209 1.188219 ATGCTGGTCGTCACTCCTGT 61.188 55.000 0.00 0.00 0.00 4.00
9322 15210 0.036952 AATGCTGGTCGTCACTCCTG 60.037 55.000 0.00 0.00 0.00 3.86
9323 15211 0.687354 AAATGCTGGTCGTCACTCCT 59.313 50.000 0.00 0.00 0.00 3.69
9324 15212 0.798776 CAAATGCTGGTCGTCACTCC 59.201 55.000 0.00 0.00 0.00 3.85
9325 15213 0.798776 CCAAATGCTGGTCGTCACTC 59.201 55.000 0.00 0.00 40.78 3.51
9326 15214 2.932663 CCAAATGCTGGTCGTCACT 58.067 52.632 0.00 0.00 40.78 3.41
9335 15223 4.082625 TGTTGTAGAGATTGCCAAATGCTG 60.083 41.667 0.00 0.00 42.00 4.41
9336 15224 4.081406 TGTTGTAGAGATTGCCAAATGCT 58.919 39.130 0.00 0.00 42.00 3.79
9337 15225 4.439305 TGTTGTAGAGATTGCCAAATGC 57.561 40.909 0.00 0.00 41.77 3.56
9338 15226 7.712264 TTTTTGTTGTAGAGATTGCCAAATG 57.288 32.000 0.00 0.00 0.00 2.32
9339 15227 8.907222 AATTTTTGTTGTAGAGATTGCCAAAT 57.093 26.923 0.00 0.00 0.00 2.32
9340 15228 8.203485 AGAATTTTTGTTGTAGAGATTGCCAAA 58.797 29.630 0.00 0.00 0.00 3.28
9341 15229 7.725251 AGAATTTTTGTTGTAGAGATTGCCAA 58.275 30.769 0.00 0.00 0.00 4.52
9342 15230 7.288810 AGAATTTTTGTTGTAGAGATTGCCA 57.711 32.000 0.00 0.00 0.00 4.92
9343 15231 8.730680 TCTAGAATTTTTGTTGTAGAGATTGCC 58.269 33.333 0.00 0.00 31.38 4.52
9344 15232 9.548208 GTCTAGAATTTTTGTTGTAGAGATTGC 57.452 33.333 0.00 0.00 35.44 3.56
9347 15235 9.660180 GGAGTCTAGAATTTTTGTTGTAGAGAT 57.340 33.333 0.00 0.00 35.44 2.75
9361 15249 3.705051 TGTACCCGTGGAGTCTAGAATT 58.295 45.455 0.00 0.00 0.00 2.17
9363 15251 2.885135 TGTACCCGTGGAGTCTAGAA 57.115 50.000 0.00 0.00 0.00 2.10
9365 15253 2.358267 GTCATGTACCCGTGGAGTCTAG 59.642 54.545 0.00 0.00 0.00 2.43
9366 15254 2.025605 AGTCATGTACCCGTGGAGTCTA 60.026 50.000 0.00 0.00 0.00 2.59
9367 15255 1.183549 GTCATGTACCCGTGGAGTCT 58.816 55.000 0.00 0.00 0.00 3.24
9368 15256 1.183549 AGTCATGTACCCGTGGAGTC 58.816 55.000 0.00 0.00 0.00 3.36
9461 15355 6.199376 TGTCCAATGGTTCCATCTAGTACTA 58.801 40.000 4.72 1.89 0.00 1.82
9462 15356 5.030147 TGTCCAATGGTTCCATCTAGTACT 58.970 41.667 0.00 0.00 0.00 2.73
9463 15357 5.353394 TGTCCAATGGTTCCATCTAGTAC 57.647 43.478 4.72 0.00 0.00 2.73
9553 15449 0.465097 CTCTCCAGCATTTCCCGCAT 60.465 55.000 0.00 0.00 0.00 4.73
9557 15453 1.492176 TGATCCTCTCCAGCATTTCCC 59.508 52.381 0.00 0.00 0.00 3.97
9606 15502 7.393515 AGCTAATACCAGAAACGAAAGGAAAAT 59.606 33.333 0.00 0.00 0.00 1.82
9629 15526 7.224297 TGTTTTCTACTTTATCTGTTCCAGCT 58.776 34.615 0.00 0.00 0.00 4.24
9642 15539 7.778382 AGGTCCTAACATGTTGTTTTCTACTTT 59.222 33.333 21.42 0.00 41.45 2.66
9648 15545 8.106247 TCATTAGGTCCTAACATGTTGTTTTC 57.894 34.615 21.42 7.95 41.45 2.29
9677 15574 3.643237 TCCTCCTCGTTACCTCAATGAT 58.357 45.455 0.00 0.00 31.69 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.