Multiple sequence alignment - TraesCS1D01G073300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G073300 chr1D 100.000 4773 0 0 1 4773 54336651 54341423 0.000000e+00 8815.0
1 TraesCS1D01G073300 chr1D 95.745 94 4 0 4515 4608 177371244 177371337 8.270000e-33 152.0
2 TraesCS1D01G073300 chr1D 84.884 86 13 0 4639 4724 309206322 309206407 2.370000e-13 87.9
3 TraesCS1D01G073300 chr1B 91.753 3880 210 51 1 3843 90310838 90314644 0.000000e+00 5291.0
4 TraesCS1D01G073300 chr1B 87.423 485 50 9 3841 4319 90314802 90315281 9.030000e-152 547.0
5 TraesCS1D01G073300 chr1A 91.147 3242 188 37 208 3407 53673656 53676840 0.000000e+00 4305.0
6 TraesCS1D01G073300 chr1A 89.599 1096 101 10 3426 4515 53676929 53678017 0.000000e+00 1380.0
7 TraesCS1D01G073300 chr1A 83.571 140 19 4 3934 4071 539708779 539708916 1.390000e-25 128.0
8 TraesCS1D01G073300 chr4A 80.013 1546 189 74 1889 3354 605025828 605027333 0.000000e+00 1033.0
9 TraesCS1D01G073300 chr4A 82.565 499 61 13 3426 3912 605027437 605027921 2.660000e-112 416.0
10 TraesCS1D01G073300 chr4A 82.583 333 49 6 1511 1843 605025321 605025644 7.820000e-73 285.0
11 TraesCS1D01G073300 chr4A 79.710 138 26 2 3928 4064 558840509 558840645 1.090000e-16 99.0
12 TraesCS1D01G073300 chr4A 90.769 65 3 3 1000 1061 605024347 605024411 3.060000e-12 84.2
13 TraesCS1D01G073300 chr5D 78.820 1525 189 76 1906 3344 556867505 556866029 0.000000e+00 904.0
14 TraesCS1D01G073300 chr5D 83.297 461 57 10 3465 3913 556865724 556865272 1.600000e-109 407.0
15 TraesCS1D01G073300 chr5D 87.764 237 23 4 1511 1747 556868044 556867814 6.090000e-69 272.0
16 TraesCS1D01G073300 chr5D 95.745 94 4 0 4515 4608 461895490 461895397 8.270000e-33 152.0
17 TraesCS1D01G073300 chr5D 82.734 139 21 3 3933 4070 124854368 124854504 2.330000e-23 121.0
18 TraesCS1D01G073300 chr5D 82.407 108 10 5 1000 1098 556869117 556869010 8.510000e-13 86.1
19 TraesCS1D01G073300 chr5B 79.007 1148 152 49 1889 2983 710186804 710187915 0.000000e+00 702.0
20 TraesCS1D01G073300 chr5B 83.836 464 50 12 3426 3878 710188542 710188991 7.390000e-113 418.0
21 TraesCS1D01G073300 chr5B 80.000 390 56 18 1469 1849 710186241 710186617 7.870000e-68 268.0
22 TraesCS1D01G073300 chr5B 84.337 166 19 6 3002 3166 710188062 710188221 6.400000e-34 156.0
23 TraesCS1D01G073300 chr6A 78.154 325 58 11 4127 4444 604562935 604562617 1.360000e-45 195.0
24 TraesCS1D01G073300 chr6A 93.750 48 3 0 4638 4685 68694992 68694945 6.630000e-09 73.1
25 TraesCS1D01G073300 chr2D 95.876 97 4 0 4512 4608 500156459 500156555 1.780000e-34 158.0
26 TraesCS1D01G073300 chr2D 96.809 94 3 0 4515 4608 551137027 551137120 1.780000e-34 158.0
27 TraesCS1D01G073300 chr2D 94.681 94 5 0 4515 4608 218389893 218389800 3.850000e-31 147.0
28 TraesCS1D01G073300 chr2D 82.576 132 22 1 3934 4064 446315934 446315803 1.090000e-21 115.0
29 TraesCS1D01G073300 chr2D 81.395 129 21 3 3934 4059 440320300 440320172 8.450000e-18 102.0
30 TraesCS1D01G073300 chrUn 75.335 373 62 24 4130 4486 33042643 33042285 8.270000e-33 152.0
31 TraesCS1D01G073300 chr7D 95.745 94 3 1 4515 4608 350071919 350071827 2.980000e-32 150.0
32 TraesCS1D01G073300 chr7D 92.857 98 6 1 4515 4611 327596528 327596431 1.790000e-29 141.0
33 TraesCS1D01G073300 chr7D 93.684 95 4 1 4514 4608 363054875 363054967 1.790000e-29 141.0
34 TraesCS1D01G073300 chr2A 94.681 94 5 0 4515 4608 431423431 431423338 3.850000e-31 147.0
35 TraesCS1D01G073300 chr2A 92.308 52 4 0 4634 4685 532169080 532169131 1.840000e-09 75.0
36 TraesCS1D01G073300 chr7A 82.394 142 21 4 3932 4071 640372181 640372042 2.330000e-23 121.0
37 TraesCS1D01G073300 chr7A 90.385 52 5 0 4634 4685 186895849 186895900 8.570000e-08 69.4
38 TraesCS1D01G073300 chr7A 90.385 52 5 0 4634 4685 235737308 235737359 8.570000e-08 69.4
39 TraesCS1D01G073300 chr6B 82.270 141 24 1 4634 4773 298491566 298491706 2.330000e-23 121.0
40 TraesCS1D01G073300 chr5A 82.270 141 22 3 3933 4071 419214271 419214410 8.390000e-23 119.0
41 TraesCS1D01G073300 chr5A 93.878 49 3 0 4637 4685 440615936 440615888 1.840000e-09 75.0
42 TraesCS1D01G073300 chr5A 93.878 49 3 0 4637 4685 520035311 520035263 1.840000e-09 75.0
43 TraesCS1D01G073300 chr3A 88.043 92 9 2 4637 4727 688051933 688051843 1.820000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G073300 chr1D 54336651 54341423 4772 False 8815.000 8815 100.0000 1 4773 1 chr1D.!!$F1 4772
1 TraesCS1D01G073300 chr1B 90310838 90315281 4443 False 2919.000 5291 89.5880 1 4319 2 chr1B.!!$F1 4318
2 TraesCS1D01G073300 chr1A 53673656 53678017 4361 False 2842.500 4305 90.3730 208 4515 2 chr1A.!!$F2 4307
3 TraesCS1D01G073300 chr4A 605024347 605027921 3574 False 454.550 1033 83.9825 1000 3912 4 chr4A.!!$F2 2912
4 TraesCS1D01G073300 chr5D 556865272 556869117 3845 True 417.275 904 83.0720 1000 3913 4 chr5D.!!$R2 2913
5 TraesCS1D01G073300 chr5B 710186241 710188991 2750 False 386.000 702 81.7950 1469 3878 4 chr5B.!!$F1 2409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 486 0.108615 ACTCGCACTCATCCTTTCCG 60.109 55.0 0.00 0.00 0.00 4.30 F
816 822 0.179100 CACGGATGCACCTCTACAGG 60.179 60.0 0.00 0.00 46.87 4.00 F
1062 1082 0.392461 GGACTCGCCATGCTTACCAA 60.392 55.0 0.00 0.00 36.34 3.67 F
1750 2356 0.535102 CGATGAAGGGCGGCCTAATT 60.535 55.0 33.03 16.82 0.00 1.40 F
2892 3764 0.384353 GCCGTTTGAGCTTCGTGTTC 60.384 55.0 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 2396 0.324830 GAGTAGGAGGAGGCACAGGT 60.325 60.000 0.00 0.00 0.00 4.00 R
2180 2970 1.066143 TCGATTGCTTCTGGAAGGACC 60.066 52.381 11.61 3.74 38.50 4.46 R
2203 2993 1.647084 GTGGTTTTTCGTCTGCGCT 59.353 52.632 9.73 0.00 38.14 5.92 R
3494 4771 1.139654 CTTCTCCAGATCCGCCATCAA 59.860 52.381 0.00 0.00 33.29 2.57 R
4616 6080 0.033208 AGAGTGGGAGGCTCAGAGAG 60.033 60.000 17.69 0.00 35.55 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.597117 TAGTTACGTGTAGCCGGCGC 62.597 60.000 23.20 18.81 0.00 6.53
65 66 4.553938 GCGCCTACAATTATATTTGTGCGT 60.554 41.667 27.54 8.95 45.81 5.24
66 67 4.903585 CGCCTACAATTATATTTGTGCGTG 59.096 41.667 23.39 15.68 42.37 5.34
69 70 6.293190 GCCTACAATTATATTTGTGCGTGCTA 60.293 38.462 18.76 1.59 40.00 3.49
80 81 1.407258 GTGCGTGCTAGAGGAGAGATT 59.593 52.381 0.00 0.00 0.00 2.40
84 85 4.159693 TGCGTGCTAGAGGAGAGATTTTTA 59.840 41.667 0.00 0.00 0.00 1.52
85 86 5.109903 GCGTGCTAGAGGAGAGATTTTTAA 58.890 41.667 0.00 0.00 0.00 1.52
88 89 7.438459 GCGTGCTAGAGGAGAGATTTTTAATTA 59.562 37.037 0.00 0.00 0.00 1.40
89 90 9.482627 CGTGCTAGAGGAGAGATTTTTAATTAT 57.517 33.333 0.00 0.00 0.00 1.28
118 119 3.831911 GCCTGAGGAGAGATGTTATAGCT 59.168 47.826 0.65 0.00 0.00 3.32
209 210 5.866335 ACACGTGAAAAAGACAACACTAA 57.134 34.783 25.01 0.00 0.00 2.24
212 213 6.799925 ACACGTGAAAAAGACAACACTAAAAG 59.200 34.615 25.01 0.00 0.00 2.27
216 217 7.461416 CGTGAAAAAGACAACACTAAAAGCAAG 60.461 37.037 0.00 0.00 0.00 4.01
268 269 8.638873 ACGAAGAAAGGAAACCAAGAATAAAAT 58.361 29.630 0.00 0.00 0.00 1.82
312 313 5.479375 GTGGAATCATACGATAGGGAGGTTA 59.521 44.000 0.00 0.00 43.77 2.85
313 314 5.479375 TGGAATCATACGATAGGGAGGTTAC 59.521 44.000 0.00 0.00 43.77 2.50
314 315 5.105432 GGAATCATACGATAGGGAGGTTACC 60.105 48.000 0.00 0.00 43.77 2.85
342 343 8.140112 AGATTTAGTTAGGTCACATGAGAACT 57.860 34.615 15.28 15.28 39.34 3.01
485 486 0.108615 ACTCGCACTCATCCTTTCCG 60.109 55.000 0.00 0.00 0.00 4.30
515 517 2.665519 CGTTTGTTGCATGTAGGACAGC 60.666 50.000 0.00 0.00 0.00 4.40
705 711 2.024868 CAACAACATCCGTCGCCGA 61.025 57.895 0.00 0.00 35.63 5.54
722 728 1.433879 GATCGATCGATAGGCCCCG 59.566 63.158 29.45 0.28 34.60 5.73
809 815 1.892819 CTCCTCACACGGATGCACCT 61.893 60.000 0.00 0.00 36.31 4.00
810 816 1.448540 CCTCACACGGATGCACCTC 60.449 63.158 0.00 0.00 36.31 3.85
811 817 1.593787 CTCACACGGATGCACCTCT 59.406 57.895 0.00 0.00 36.31 3.69
812 818 0.817654 CTCACACGGATGCACCTCTA 59.182 55.000 0.00 0.00 36.31 2.43
813 819 0.530744 TCACACGGATGCACCTCTAC 59.469 55.000 0.00 0.00 36.31 2.59
814 820 0.246360 CACACGGATGCACCTCTACA 59.754 55.000 0.00 0.00 36.31 2.74
815 821 0.532573 ACACGGATGCACCTCTACAG 59.467 55.000 0.00 0.00 36.31 2.74
816 822 0.179100 CACGGATGCACCTCTACAGG 60.179 60.000 0.00 0.00 46.87 4.00
962 968 4.559704 GCCAGGTGTTCTATTCTATCTCGG 60.560 50.000 0.00 0.00 0.00 4.63
963 969 4.551388 CAGGTGTTCTATTCTATCTCGGC 58.449 47.826 0.00 0.00 0.00 5.54
964 970 3.253677 AGGTGTTCTATTCTATCTCGGCG 59.746 47.826 0.00 0.00 0.00 6.46
1062 1082 0.392461 GGACTCGCCATGCTTACCAA 60.392 55.000 0.00 0.00 36.34 3.67
1216 1318 5.476945 GGAGCAAGTTCCTCTTTTAATTGGA 59.523 40.000 0.00 0.00 33.63 3.53
1218 1320 6.071320 AGCAAGTTCCTCTTTTAATTGGAGT 58.929 36.000 0.00 0.00 33.63 3.85
1219 1321 6.015940 AGCAAGTTCCTCTTTTAATTGGAGTG 60.016 38.462 0.00 0.00 33.63 3.51
1222 1324 6.373759 AGTTCCTCTTTTAATTGGAGTGGTT 58.626 36.000 0.00 0.00 0.00 3.67
1241 1352 3.557508 GTTCGTAAATTTGGTTGGACCG 58.442 45.455 0.00 0.00 42.58 4.79
1246 1357 3.897681 ATTTGGTTGGACCGGCCCC 62.898 63.158 3.55 5.29 42.58 5.80
1314 1425 3.786201 TATTGACAATGGCCCGGTCCG 62.786 57.143 11.05 3.60 0.00 4.79
1357 1525 1.451927 TTGCCTGGACGATGATGGC 60.452 57.895 0.00 0.00 43.49 4.40
1435 1995 1.202428 GGATCTTGAGCACGAGGTACC 60.202 57.143 2.73 2.73 0.00 3.34
1440 2000 2.283966 AGCACGAGGTACCTGCCT 60.284 61.111 22.10 6.77 42.53 4.75
1442 2002 0.613853 AGCACGAGGTACCTGCCTAA 60.614 55.000 22.10 0.00 39.34 2.69
1451 2011 2.032178 GGTACCTGCCTAACTACGTACG 59.968 54.545 15.01 15.01 0.00 3.67
1455 2015 2.478539 CCTGCCTAACTACGTACGGTTC 60.479 54.545 21.06 4.24 0.00 3.62
1457 2017 2.819608 TGCCTAACTACGTACGGTTCTT 59.180 45.455 21.06 7.51 0.00 2.52
1458 2018 3.119849 TGCCTAACTACGTACGGTTCTTC 60.120 47.826 21.06 7.70 0.00 2.87
1459 2019 3.127721 GCCTAACTACGTACGGTTCTTCT 59.872 47.826 21.06 0.00 0.00 2.85
1601 2207 4.218686 GCCCAACCACCACCACCT 62.219 66.667 0.00 0.00 0.00 4.00
1750 2356 0.535102 CGATGAAGGGCGGCCTAATT 60.535 55.000 33.03 16.82 0.00 1.40
1790 2396 4.386951 CGTCCATGGCGACCACCA 62.387 66.667 19.72 0.00 45.82 4.17
1794 2400 2.747460 CATGGCGACCACCACCTG 60.747 66.667 0.50 0.00 44.17 4.00
2069 2852 4.391830 GCCTAAAGTTCAACGATGACATCA 59.608 41.667 15.58 0.00 34.61 3.07
2161 2951 6.037940 TCAGTGAAAATCATGCTCTGCTTATC 59.962 38.462 0.00 0.00 0.00 1.75
2172 2962 3.549221 GCTCTGCTTATCCTCTGTACGTC 60.549 52.174 0.00 0.00 0.00 4.34
2173 2963 3.880490 CTCTGCTTATCCTCTGTACGTCT 59.120 47.826 0.00 0.00 0.00 4.18
2174 2964 4.270834 TCTGCTTATCCTCTGTACGTCTT 58.729 43.478 0.00 0.00 0.00 3.01
2175 2965 4.705507 TCTGCTTATCCTCTGTACGTCTTT 59.294 41.667 0.00 0.00 0.00 2.52
2176 2966 4.995124 TGCTTATCCTCTGTACGTCTTTC 58.005 43.478 0.00 0.00 0.00 2.62
2177 2967 4.142227 TGCTTATCCTCTGTACGTCTTTCC 60.142 45.833 0.00 0.00 0.00 3.13
2178 2968 4.737055 GCTTATCCTCTGTACGTCTTTCCC 60.737 50.000 0.00 0.00 0.00 3.97
2179 2969 2.599408 TCCTCTGTACGTCTTTCCCT 57.401 50.000 0.00 0.00 0.00 4.20
2180 2970 2.168496 TCCTCTGTACGTCTTTCCCTG 58.832 52.381 0.00 0.00 0.00 4.45
2181 2971 1.204941 CCTCTGTACGTCTTTCCCTGG 59.795 57.143 0.00 0.00 0.00 4.45
2203 2993 4.442706 GTCCTTCCAGAAGCAATCGAATA 58.557 43.478 1.68 0.00 37.11 1.75
2220 3010 1.803334 ATAGCGCAGACGAAAAACCA 58.197 45.000 11.47 0.00 43.93 3.67
2379 3178 2.435938 GCGGCGGAGATGGACAAA 60.436 61.111 9.78 0.00 0.00 2.83
2635 3437 5.360591 AGCTGAGGTGAATAAGTAAATCCG 58.639 41.667 0.00 0.00 0.00 4.18
2666 3499 7.874940 TCATTTTTGACAGTTTCGATCATCTT 58.125 30.769 0.00 0.00 0.00 2.40
2669 3502 8.560576 TTTTTGACAGTTTCGATCATCTTTTC 57.439 30.769 0.00 0.00 0.00 2.29
2745 3582 3.557903 GAGGCCTTGCAGCAGGTGA 62.558 63.158 6.77 0.00 36.15 4.02
2753 3590 3.256631 CCTTGCAGCAGGTGAATTTAAGT 59.743 43.478 3.02 0.00 0.00 2.24
2754 3591 4.458989 CCTTGCAGCAGGTGAATTTAAGTA 59.541 41.667 3.02 0.00 0.00 2.24
2759 3596 6.094048 TGCAGCAGGTGAATTTAAGTATTCTC 59.906 38.462 3.02 0.00 35.89 2.87
2762 3599 7.119699 CAGCAGGTGAATTTAAGTATTCTCACA 59.880 37.037 0.00 0.00 35.89 3.58
2833 3681 6.485393 TCATGCACGTATGTACATTTTGATG 58.515 36.000 14.77 12.69 29.38 3.07
2892 3764 0.384353 GCCGTTTGAGCTTCGTGTTC 60.384 55.000 0.00 0.00 0.00 3.18
2949 3825 4.067896 CCTCAAACTCTGAAAAGCTGCTA 58.932 43.478 0.90 0.00 32.17 3.49
2968 3844 4.020218 TGCTAGCACTGAAGAACAAGGTAT 60.020 41.667 14.93 0.00 0.00 2.73
2971 3847 5.483685 AGCACTGAAGAACAAGGTATACA 57.516 39.130 5.01 0.00 0.00 2.29
2972 3848 5.865085 AGCACTGAAGAACAAGGTATACAA 58.135 37.500 5.01 0.00 0.00 2.41
3005 4009 9.256477 GTTTAAGGAAATTTTCTGGTACAAAGG 57.744 33.333 0.00 0.00 38.70 3.11
3008 4012 7.050970 AGGAAATTTTCTGGTACAAAGGAAC 57.949 36.000 8.93 0.00 38.70 3.62
3015 4019 4.964593 TCTGGTACAAAGGAACTGTAACC 58.035 43.478 0.00 0.00 40.86 2.85
3027 4031 5.240844 AGGAACTGTAACCTTTATGTGTTGC 59.759 40.000 1.44 0.00 37.18 4.17
3033 4037 6.535540 TGTAACCTTTATGTGTTGCTTCCTA 58.464 36.000 0.00 0.00 0.00 2.94
3052 4056 4.897076 TCCTATACCTTTCAGGCAACGATA 59.103 41.667 0.00 0.00 39.63 2.92
3143 4147 5.915196 GTGAAAGAAGTGAGCATTTTGGTAC 59.085 40.000 0.00 0.00 0.00 3.34
3240 4279 0.719465 GGAAATGCGACGTCGATGTT 59.281 50.000 39.74 27.06 43.02 2.71
3346 4385 2.166459 TCTCCAGCAGTAAGTTCATCCG 59.834 50.000 0.00 0.00 0.00 4.18
3439 4564 5.883685 ATCTCCATTGAATCTAGTGCTGA 57.116 39.130 0.00 0.00 0.00 4.26
3597 4874 2.744202 CAAGCCTGATACACTCCAACAC 59.256 50.000 0.00 0.00 0.00 3.32
3684 4961 1.064654 GTCGCTCAGAAAATCCATGGC 59.935 52.381 6.96 0.00 0.00 4.40
3706 5001 1.453379 CTGCTTGAGGGGGCATCTG 60.453 63.158 0.00 0.00 37.83 2.90
3776 5071 1.656441 CTGCTGCCCAAGTGAACAC 59.344 57.895 0.00 0.00 0.00 3.32
3779 5074 0.242017 GCTGCCCAAGTGAACACATC 59.758 55.000 7.68 0.00 0.00 3.06
3792 5087 4.851558 GTGAACACATCCGCTATTTGTTTC 59.148 41.667 0.00 0.00 38.34 2.78
3885 5341 9.072294 GTAAAAATAGTGGTTTGATATGTGCAC 57.928 33.333 10.75 10.75 0.00 4.57
3895 5353 2.233431 TGATATGTGCACTTTTTGGGGC 59.767 45.455 19.41 0.00 0.00 5.80
3908 5366 4.445557 TTTTGGGGCCAAAAGCTTTATT 57.554 36.364 13.10 0.00 46.80 1.40
3994 5454 3.796504 GCATCCAGCGGATAAAAACATGG 60.797 47.826 9.31 0.00 40.98 3.66
4020 5480 3.514645 CAACACCCAATTTCTGCATAGC 58.485 45.455 0.00 0.00 0.00 2.97
4026 5486 4.884164 ACCCAATTTCTGCATAGCTAAGAC 59.116 41.667 0.00 0.00 0.00 3.01
4054 5514 5.241506 CACAACCAAATACCAACTGTCTGAT 59.758 40.000 0.00 0.00 0.00 2.90
4093 5553 3.198409 TGACAGATCGGCAGCAATAAT 57.802 42.857 0.00 0.00 0.00 1.28
4111 5572 6.183360 GCAATAATGTCATACAAGACGACACA 60.183 38.462 0.00 0.00 42.10 3.72
4113 5574 3.297830 TGTCATACAAGACGACACAGG 57.702 47.619 0.00 0.00 41.41 4.00
4190 5653 1.575447 GCCCCTGACCCATCTTCCTT 61.575 60.000 0.00 0.00 0.00 3.36
4191 5654 1.893315 CCCCTGACCCATCTTCCTTA 58.107 55.000 0.00 0.00 0.00 2.69
4241 5704 2.261671 GAGCAAAGCTCGTCCGGA 59.738 61.111 0.00 0.00 45.85 5.14
4275 5738 2.482333 GCTCGCCTCGCCTCTTCTA 61.482 63.158 0.00 0.00 0.00 2.10
4464 5928 1.152984 CCCGTGCCCAGATGCATTA 60.153 57.895 0.00 0.00 44.30 1.90
4465 5929 0.538057 CCCGTGCCCAGATGCATTAT 60.538 55.000 0.00 0.00 44.30 1.28
4469 5933 1.000607 GTGCCCAGATGCATTATGCTG 60.001 52.381 18.44 8.23 45.31 4.41
4471 5935 0.601558 CCCAGATGCATTATGCTGGC 59.398 55.000 21.36 7.46 45.31 4.85
4518 5982 2.513897 GCCCTATGCGTGGGTGTC 60.514 66.667 7.64 0.00 46.22 3.67
4519 5983 2.202878 CCCTATGCGTGGGTGTCG 60.203 66.667 7.64 0.00 39.82 4.35
4520 5984 2.202878 CCTATGCGTGGGTGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
4521 5985 2.577059 CTATGCGTGGGTGTCGGT 59.423 61.111 0.00 0.00 0.00 4.69
4522 5986 1.809619 CTATGCGTGGGTGTCGGTG 60.810 63.158 0.00 0.00 0.00 4.94
4523 5987 2.501223 CTATGCGTGGGTGTCGGTGT 62.501 60.000 0.00 0.00 0.00 4.16
4524 5988 2.495366 TATGCGTGGGTGTCGGTGTC 62.495 60.000 0.00 0.00 0.00 3.67
4525 5989 4.595538 GCGTGGGTGTCGGTGTCA 62.596 66.667 0.00 0.00 0.00 3.58
4526 5990 2.107343 CGTGGGTGTCGGTGTCAA 59.893 61.111 0.00 0.00 0.00 3.18
4527 5991 1.521906 CGTGGGTGTCGGTGTCAAA 60.522 57.895 0.00 0.00 0.00 2.69
4528 5992 1.090625 CGTGGGTGTCGGTGTCAAAA 61.091 55.000 0.00 0.00 0.00 2.44
4529 5993 0.379316 GTGGGTGTCGGTGTCAAAAC 59.621 55.000 0.00 0.00 0.00 2.43
4530 5994 0.748729 TGGGTGTCGGTGTCAAAACC 60.749 55.000 0.00 0.00 36.82 3.27
4536 6000 4.150994 GGTGTCAAAACCGGCAGA 57.849 55.556 0.00 0.00 0.00 4.26
4537 6001 1.652563 GGTGTCAAAACCGGCAGAC 59.347 57.895 0.00 5.21 0.00 3.51
4538 6002 1.652563 GTGTCAAAACCGGCAGACC 59.347 57.895 0.00 0.00 0.00 3.85
4539 6003 0.818040 GTGTCAAAACCGGCAGACCT 60.818 55.000 0.00 0.00 0.00 3.85
4540 6004 0.534203 TGTCAAAACCGGCAGACCTC 60.534 55.000 0.00 0.00 0.00 3.85
4541 6005 1.301401 TCAAAACCGGCAGACCTCG 60.301 57.895 0.00 0.00 0.00 4.63
4553 6017 3.619030 ACCTCGGGGTAGGGGGTT 61.619 66.667 4.23 0.00 45.32 4.11
4554 6018 2.767073 CCTCGGGGTAGGGGGTTC 60.767 72.222 0.00 0.00 32.55 3.62
4555 6019 2.767073 CTCGGGGTAGGGGGTTCC 60.767 72.222 0.00 0.00 0.00 3.62
4556 6020 4.783501 TCGGGGTAGGGGGTTCCG 62.784 72.222 0.00 0.00 41.52 4.30
4557 6021 4.783501 CGGGGTAGGGGGTTCCGA 62.784 72.222 0.00 0.00 42.94 4.55
4558 6022 2.767073 GGGGTAGGGGGTTCCGAG 60.767 72.222 0.00 0.00 41.52 4.63
4559 6023 3.477346 GGGTAGGGGGTTCCGAGC 61.477 72.222 0.00 0.00 41.52 5.03
4560 6024 2.365237 GGTAGGGGGTTCCGAGCT 60.365 66.667 0.00 0.00 41.52 4.09
4561 6025 2.732619 GGTAGGGGGTTCCGAGCTG 61.733 68.421 0.00 0.00 41.52 4.24
4562 6026 1.988406 GTAGGGGGTTCCGAGCTGT 60.988 63.158 0.00 0.00 41.52 4.40
4563 6027 1.987855 TAGGGGGTTCCGAGCTGTG 60.988 63.158 0.00 0.00 41.52 3.66
4564 6028 4.410400 GGGGGTTCCGAGCTGTGG 62.410 72.222 0.00 0.00 0.00 4.17
4565 6029 3.319198 GGGGTTCCGAGCTGTGGA 61.319 66.667 0.00 0.00 0.00 4.02
4566 6030 2.670148 GGGGTTCCGAGCTGTGGAT 61.670 63.158 5.17 0.00 34.91 3.41
4567 6031 1.153349 GGGTTCCGAGCTGTGGATC 60.153 63.158 5.17 4.90 34.91 3.36
4568 6032 1.617947 GGGTTCCGAGCTGTGGATCT 61.618 60.000 5.17 0.00 34.91 2.75
4569 6033 0.179097 GGTTCCGAGCTGTGGATCTC 60.179 60.000 5.17 0.76 34.91 2.75
4572 6036 3.514417 CGAGCTGTGGATCTCGGA 58.486 61.111 0.00 0.00 45.89 4.55
4573 6037 2.037053 CGAGCTGTGGATCTCGGAT 58.963 57.895 0.00 0.00 45.89 4.18
4574 6038 0.039617 CGAGCTGTGGATCTCGGATC 60.040 60.000 0.00 5.59 45.89 3.36
4575 6039 0.039617 GAGCTGTGGATCTCGGATCG 60.040 60.000 0.00 0.00 0.00 3.69
4576 6040 0.466372 AGCTGTGGATCTCGGATCGA 60.466 55.000 7.51 0.00 0.00 3.59
4586 6050 2.803203 TCGGATCGAGGGTAACAGG 58.197 57.895 0.00 0.00 39.74 4.00
4587 6051 0.256752 TCGGATCGAGGGTAACAGGA 59.743 55.000 0.00 0.00 39.74 3.86
4588 6052 1.108776 CGGATCGAGGGTAACAGGAA 58.891 55.000 0.00 0.00 39.74 3.36
4589 6053 1.202382 CGGATCGAGGGTAACAGGAAC 60.202 57.143 0.00 0.00 39.74 3.62
4590 6054 1.202382 GGATCGAGGGTAACAGGAACG 60.202 57.143 0.00 0.00 39.74 3.95
4591 6055 1.747355 GATCGAGGGTAACAGGAACGA 59.253 52.381 0.00 0.00 39.74 3.85
4592 6056 1.619654 TCGAGGGTAACAGGAACGAA 58.380 50.000 0.00 0.00 39.74 3.85
4593 6057 1.542915 TCGAGGGTAACAGGAACGAAG 59.457 52.381 0.00 0.00 39.74 3.79
4594 6058 1.403780 CGAGGGTAACAGGAACGAAGG 60.404 57.143 0.00 0.00 39.74 3.46
4595 6059 1.897802 GAGGGTAACAGGAACGAAGGA 59.102 52.381 0.00 0.00 39.74 3.36
4596 6060 1.900486 AGGGTAACAGGAACGAAGGAG 59.100 52.381 0.00 0.00 39.74 3.69
4597 6061 1.622312 GGGTAACAGGAACGAAGGAGT 59.378 52.381 0.00 0.00 39.74 3.85
4598 6062 2.353505 GGGTAACAGGAACGAAGGAGTC 60.354 54.545 0.00 0.00 39.74 3.36
4613 6077 4.373348 AGGAGTCGATGTTTACTAGTGC 57.627 45.455 5.39 0.00 0.00 4.40
4614 6078 4.017808 AGGAGTCGATGTTTACTAGTGCT 58.982 43.478 5.39 0.00 0.00 4.40
4615 6079 4.096682 AGGAGTCGATGTTTACTAGTGCTC 59.903 45.833 5.39 0.00 0.00 4.26
4616 6080 4.352887 GAGTCGATGTTTACTAGTGCTCC 58.647 47.826 5.39 0.00 0.00 4.70
4617 6081 4.017808 AGTCGATGTTTACTAGTGCTCCT 58.982 43.478 5.39 0.00 0.00 3.69
4618 6082 4.096682 AGTCGATGTTTACTAGTGCTCCTC 59.903 45.833 5.39 0.00 0.00 3.71
4619 6083 4.096682 GTCGATGTTTACTAGTGCTCCTCT 59.903 45.833 5.39 0.00 0.00 3.69
4620 6084 4.335874 TCGATGTTTACTAGTGCTCCTCTC 59.664 45.833 5.39 0.00 0.00 3.20
4621 6085 4.336993 CGATGTTTACTAGTGCTCCTCTCT 59.663 45.833 5.39 0.00 0.00 3.10
4622 6086 5.587289 GATGTTTACTAGTGCTCCTCTCTG 58.413 45.833 5.39 0.00 0.00 3.35
4623 6087 4.663334 TGTTTACTAGTGCTCCTCTCTGA 58.337 43.478 5.39 0.00 0.00 3.27
4624 6088 4.702612 TGTTTACTAGTGCTCCTCTCTGAG 59.297 45.833 5.39 0.00 35.40 3.35
4630 6094 4.275781 CTCCTCTCTGAGCCTCCC 57.724 66.667 0.00 0.00 0.00 4.30
4631 6095 1.309347 CTCCTCTCTGAGCCTCCCA 59.691 63.158 0.00 0.00 0.00 4.37
4632 6096 1.000993 TCCTCTCTGAGCCTCCCAC 59.999 63.158 0.00 0.00 0.00 4.61
4633 6097 1.001503 CCTCTCTGAGCCTCCCACT 59.998 63.158 0.00 0.00 0.00 4.00
4634 6098 1.042559 CCTCTCTGAGCCTCCCACTC 61.043 65.000 0.00 0.00 34.62 3.51
4635 6099 0.033208 CTCTCTGAGCCTCCCACTCT 60.033 60.000 0.00 0.00 35.12 3.24
4636 6100 0.324183 TCTCTGAGCCTCCCACTCTG 60.324 60.000 0.00 0.00 35.12 3.35
4637 6101 1.958902 CTCTGAGCCTCCCACTCTGC 61.959 65.000 0.00 0.00 35.12 4.26
4638 6102 3.005539 TGAGCCTCCCACTCTGCC 61.006 66.667 0.00 0.00 35.12 4.85
4639 6103 4.154347 GAGCCTCCCACTCTGCCG 62.154 72.222 0.00 0.00 0.00 5.69
4642 6106 3.322466 CCTCCCACTCTGCCGGTT 61.322 66.667 1.90 0.00 0.00 4.44
4643 6107 2.750350 CTCCCACTCTGCCGGTTT 59.250 61.111 1.90 0.00 0.00 3.27
4644 6108 1.073199 CTCCCACTCTGCCGGTTTT 59.927 57.895 1.90 0.00 0.00 2.43
4645 6109 1.228124 TCCCACTCTGCCGGTTTTG 60.228 57.895 1.90 0.00 0.00 2.44
4646 6110 1.228124 CCCACTCTGCCGGTTTTGA 60.228 57.895 1.90 0.00 0.00 2.69
4647 6111 1.515521 CCCACTCTGCCGGTTTTGAC 61.516 60.000 1.90 0.00 0.00 3.18
4648 6112 0.817634 CCACTCTGCCGGTTTTGACA 60.818 55.000 1.90 0.00 0.00 3.58
4649 6113 1.238439 CACTCTGCCGGTTTTGACAT 58.762 50.000 1.90 0.00 0.00 3.06
4650 6114 1.197721 CACTCTGCCGGTTTTGACATC 59.802 52.381 1.90 0.00 0.00 3.06
4651 6115 0.443869 CTCTGCCGGTTTTGACATCG 59.556 55.000 1.90 0.00 0.00 3.84
4652 6116 0.034198 TCTGCCGGTTTTGACATCGA 59.966 50.000 1.90 0.00 0.00 3.59
4653 6117 0.165944 CTGCCGGTTTTGACATCGAC 59.834 55.000 1.90 0.00 0.00 4.20
4654 6118 0.533085 TGCCGGTTTTGACATCGACA 60.533 50.000 1.90 0.00 0.00 4.35
4655 6119 0.110373 GCCGGTTTTGACATCGACAC 60.110 55.000 1.90 0.00 0.00 3.67
4656 6120 0.515564 CCGGTTTTGACATCGACACC 59.484 55.000 0.00 0.00 0.00 4.16
4657 6121 0.162933 CGGTTTTGACATCGACACCG 59.837 55.000 11.45 11.45 44.21 4.94
4658 6122 0.515564 GGTTTTGACATCGACACCGG 59.484 55.000 0.00 0.00 36.24 5.28
4659 6123 1.223187 GTTTTGACATCGACACCGGT 58.777 50.000 0.00 0.00 36.24 5.28
4664 6128 3.966215 CATCGACACCGGTGCTTT 58.034 55.556 34.26 15.85 40.28 3.51
4665 6129 1.787847 CATCGACACCGGTGCTTTC 59.212 57.895 34.26 22.48 40.28 2.62
4666 6130 0.948623 CATCGACACCGGTGCTTTCA 60.949 55.000 34.26 14.24 40.28 2.69
4667 6131 0.036388 ATCGACACCGGTGCTTTCAT 60.036 50.000 34.26 14.16 36.24 2.57
4668 6132 0.250124 TCGACACCGGTGCTTTCATT 60.250 50.000 34.26 13.33 36.24 2.57
4669 6133 0.110238 CGACACCGGTGCTTTCATTG 60.110 55.000 34.26 13.76 0.00 2.82
4670 6134 1.234821 GACACCGGTGCTTTCATTGA 58.765 50.000 34.26 0.00 0.00 2.57
4671 6135 1.197721 GACACCGGTGCTTTCATTGAG 59.802 52.381 34.26 6.55 0.00 3.02
4672 6136 1.202758 ACACCGGTGCTTTCATTGAGA 60.203 47.619 34.26 0.00 0.00 3.27
4673 6137 1.466167 CACCGGTGCTTTCATTGAGAG 59.534 52.381 24.02 0.00 0.00 3.20
4674 6138 1.072331 ACCGGTGCTTTCATTGAGAGT 59.928 47.619 6.12 0.00 0.00 3.24
4675 6139 1.734465 CCGGTGCTTTCATTGAGAGTC 59.266 52.381 6.13 0.29 0.00 3.36
4676 6140 1.734465 CGGTGCTTTCATTGAGAGTCC 59.266 52.381 6.13 7.85 0.00 3.85
4677 6141 2.087646 GGTGCTTTCATTGAGAGTCCC 58.912 52.381 6.13 3.15 0.00 4.46
4678 6142 1.734465 GTGCTTTCATTGAGAGTCCCG 59.266 52.381 6.13 0.00 0.00 5.14
4679 6143 0.729690 GCTTTCATTGAGAGTCCCGC 59.270 55.000 6.13 0.00 0.00 6.13
4680 6144 1.677217 GCTTTCATTGAGAGTCCCGCT 60.677 52.381 6.13 0.00 0.00 5.52
4681 6145 2.005451 CTTTCATTGAGAGTCCCGCTG 58.995 52.381 0.00 0.00 0.00 5.18
4682 6146 0.976641 TTCATTGAGAGTCCCGCTGT 59.023 50.000 0.00 0.00 0.00 4.40
4683 6147 0.247460 TCATTGAGAGTCCCGCTGTG 59.753 55.000 0.00 0.00 0.00 3.66
4684 6148 1.078848 ATTGAGAGTCCCGCTGTGC 60.079 57.895 0.00 0.00 0.00 4.57
4685 6149 1.830587 ATTGAGAGTCCCGCTGTGCA 61.831 55.000 0.00 0.00 0.00 4.57
4686 6150 2.038814 TTGAGAGTCCCGCTGTGCAA 62.039 55.000 0.00 0.00 0.00 4.08
4687 6151 1.078848 GAGAGTCCCGCTGTGCAAT 60.079 57.895 0.00 0.00 0.00 3.56
4688 6152 1.078848 AGAGTCCCGCTGTGCAATC 60.079 57.895 0.00 0.00 0.00 2.67
4689 6153 1.375908 GAGTCCCGCTGTGCAATCA 60.376 57.895 0.00 0.00 0.00 2.57
4690 6154 1.639298 GAGTCCCGCTGTGCAATCAC 61.639 60.000 0.00 0.00 43.40 3.06
4691 6155 1.672356 GTCCCGCTGTGCAATCACT 60.672 57.895 0.00 0.00 43.49 3.41
4692 6156 0.391130 GTCCCGCTGTGCAATCACTA 60.391 55.000 0.00 0.00 43.49 2.74
4693 6157 0.108186 TCCCGCTGTGCAATCACTAG 60.108 55.000 0.00 0.00 43.49 2.57
4694 6158 0.108186 CCCGCTGTGCAATCACTAGA 60.108 55.000 0.00 0.00 43.49 2.43
4695 6159 1.675714 CCCGCTGTGCAATCACTAGAA 60.676 52.381 0.00 0.00 43.49 2.10
4696 6160 1.662629 CCGCTGTGCAATCACTAGAAG 59.337 52.381 0.00 0.00 43.49 2.85
4697 6161 1.662629 CGCTGTGCAATCACTAGAAGG 59.337 52.381 0.00 0.00 43.49 3.46
4698 6162 2.012673 GCTGTGCAATCACTAGAAGGG 58.987 52.381 0.00 0.00 43.49 3.95
4699 6163 2.616510 GCTGTGCAATCACTAGAAGGGT 60.617 50.000 0.00 0.00 43.49 4.34
4700 6164 3.265791 CTGTGCAATCACTAGAAGGGTC 58.734 50.000 0.00 0.00 43.49 4.46
4701 6165 2.271800 GTGCAATCACTAGAAGGGTCG 58.728 52.381 0.00 0.00 40.03 4.79
4702 6166 2.094182 GTGCAATCACTAGAAGGGTCGA 60.094 50.000 0.00 0.00 40.03 4.20
4703 6167 2.766263 TGCAATCACTAGAAGGGTCGAT 59.234 45.455 0.00 0.00 0.00 3.59
4704 6168 3.126831 GCAATCACTAGAAGGGTCGATG 58.873 50.000 0.00 0.00 0.00 3.84
4705 6169 3.722147 CAATCACTAGAAGGGTCGATGG 58.278 50.000 0.00 0.00 0.00 3.51
4706 6170 1.112113 TCACTAGAAGGGTCGATGGC 58.888 55.000 0.00 0.00 0.00 4.40
4707 6171 1.115467 CACTAGAAGGGTCGATGGCT 58.885 55.000 0.00 0.00 0.00 4.75
4708 6172 1.067821 CACTAGAAGGGTCGATGGCTC 59.932 57.143 0.00 0.00 0.00 4.70
4709 6173 1.342076 ACTAGAAGGGTCGATGGCTCA 60.342 52.381 0.00 0.00 0.00 4.26
4710 6174 1.067821 CTAGAAGGGTCGATGGCTCAC 59.932 57.143 0.00 0.00 0.00 3.51
4711 6175 1.153349 GAAGGGTCGATGGCTCACC 60.153 63.158 0.00 0.00 0.00 4.02
4712 6176 1.613630 AAGGGTCGATGGCTCACCT 60.614 57.895 0.00 0.00 36.63 4.00
4713 6177 1.903877 AAGGGTCGATGGCTCACCTG 61.904 60.000 0.00 0.00 36.63 4.00
4714 6178 2.512515 GGTCGATGGCTCACCTGC 60.513 66.667 0.00 0.00 36.63 4.85
4715 6179 2.265739 GTCGATGGCTCACCTGCA 59.734 61.111 0.00 0.00 36.63 4.41
4716 6180 1.153289 GTCGATGGCTCACCTGCAT 60.153 57.895 0.00 0.00 36.63 3.96
4717 6181 0.104855 GTCGATGGCTCACCTGCATA 59.895 55.000 0.00 0.00 36.63 3.14
4718 6182 1.051008 TCGATGGCTCACCTGCATAT 58.949 50.000 0.00 0.00 36.63 1.78
4719 6183 1.001293 TCGATGGCTCACCTGCATATC 59.999 52.381 0.00 0.00 36.63 1.63
4720 6184 1.270465 CGATGGCTCACCTGCATATCA 60.270 52.381 0.00 0.00 36.63 2.15
4721 6185 2.807837 CGATGGCTCACCTGCATATCAA 60.808 50.000 0.00 0.00 36.63 2.57
4722 6186 2.042686 TGGCTCACCTGCATATCAAC 57.957 50.000 0.00 0.00 36.63 3.18
4723 6187 1.561076 TGGCTCACCTGCATATCAACT 59.439 47.619 0.00 0.00 36.63 3.16
4724 6188 2.771372 TGGCTCACCTGCATATCAACTA 59.229 45.455 0.00 0.00 36.63 2.24
4725 6189 3.134458 GGCTCACCTGCATATCAACTAC 58.866 50.000 0.00 0.00 34.04 2.73
4726 6190 2.797156 GCTCACCTGCATATCAACTACG 59.203 50.000 0.00 0.00 0.00 3.51
4727 6191 2.797156 CTCACCTGCATATCAACTACGC 59.203 50.000 0.00 0.00 0.00 4.42
4728 6192 1.867233 CACCTGCATATCAACTACGCC 59.133 52.381 0.00 0.00 0.00 5.68
4729 6193 1.484653 ACCTGCATATCAACTACGCCA 59.515 47.619 0.00 0.00 0.00 5.69
4730 6194 2.093181 ACCTGCATATCAACTACGCCAA 60.093 45.455 0.00 0.00 0.00 4.52
4731 6195 2.287915 CCTGCATATCAACTACGCCAAC 59.712 50.000 0.00 0.00 0.00 3.77
4733 6197 1.260561 GCATATCAACTACGCCAACGG 59.739 52.381 0.00 0.00 46.04 4.44
4734 6198 1.260561 CATATCAACTACGCCAACGGC 59.739 52.381 0.00 0.00 46.75 5.68
4748 6212 4.745751 CGGCCACGGGAGCGTTTA 62.746 66.667 2.24 0.00 36.18 2.01
4749 6213 3.122971 GGCCACGGGAGCGTTTAC 61.123 66.667 0.00 0.00 0.00 2.01
4750 6214 3.484547 GCCACGGGAGCGTTTACG 61.485 66.667 0.00 0.00 43.27 3.18
4760 6224 4.376176 CGTTTACGCCCCCGACCA 62.376 66.667 0.00 0.00 38.29 4.02
4761 6225 2.435410 GTTTACGCCCCCGACCAG 60.435 66.667 0.00 0.00 38.29 4.00
4762 6226 4.397832 TTTACGCCCCCGACCAGC 62.398 66.667 0.00 0.00 38.29 4.85
4767 6231 2.600470 GCCCCCGACCAGCTTTTT 60.600 61.111 0.00 0.00 0.00 1.94
4768 6232 2.931068 GCCCCCGACCAGCTTTTTG 61.931 63.158 0.00 0.00 0.00 2.44
4769 6233 1.530655 CCCCCGACCAGCTTTTTGT 60.531 57.895 0.00 0.00 0.00 2.83
4770 6234 1.659794 CCCCGACCAGCTTTTTGTG 59.340 57.895 0.00 0.00 0.00 3.33
4771 6235 1.106944 CCCCGACCAGCTTTTTGTGT 61.107 55.000 0.00 0.00 0.00 3.72
4772 6236 0.744281 CCCGACCAGCTTTTTGTGTT 59.256 50.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.246423 CACGTAACTACATTAACGAATTTTCAG 57.754 33.333 0.23 0.00 0.00 3.02
15 16 5.331902 GGCTACACGTAACTACATTAACGA 58.668 41.667 0.23 0.00 0.00 3.85
19 20 3.489059 GCCGGCTACACGTAACTACATTA 60.489 47.826 22.15 0.00 0.00 1.90
44 45 4.675114 GCACGCACAAATATAATTGTAGGC 59.325 41.667 5.86 6.00 41.44 3.93
95 96 3.576118 GCTATAACATCTCTCCTCAGGCA 59.424 47.826 0.00 0.00 0.00 4.75
118 119 1.385528 CATCAGCTTATGTGCAGGCA 58.614 50.000 0.00 0.00 34.99 4.75
191 192 7.540745 TCTTGCTTTTAGTGTTGTCTTTTTCAC 59.459 33.333 0.00 0.00 0.00 3.18
238 239 4.703093 TCTTGGTTTCCTTTCTTCGTTTGT 59.297 37.500 0.00 0.00 0.00 2.83
285 286 3.893200 TCCCTATCGTATGATTCCACGTT 59.107 43.478 2.02 3.40 39.18 3.99
286 287 3.493334 TCCCTATCGTATGATTCCACGT 58.507 45.455 2.02 0.00 39.18 4.49
312 313 5.836024 TGTGACCTAACTAAATCTTGGGT 57.164 39.130 0.00 0.00 35.31 4.51
313 314 6.414732 TCATGTGACCTAACTAAATCTTGGG 58.585 40.000 0.00 0.00 0.00 4.12
314 315 7.331026 TCTCATGTGACCTAACTAAATCTTGG 58.669 38.462 0.00 0.00 0.00 3.61
316 317 8.598041 AGTTCTCATGTGACCTAACTAAATCTT 58.402 33.333 0.00 0.00 0.00 2.40
323 324 8.824756 TTCTATAGTTCTCATGTGACCTAACT 57.175 34.615 6.20 5.80 0.00 2.24
344 345 7.136772 CGCGGATATGATATACGGATTTTCTA 58.863 38.462 17.90 0.00 0.00 2.10
485 486 1.299089 GCAACAAACGCCACACCTC 60.299 57.895 0.00 0.00 0.00 3.85
515 517 7.913674 AAGAAGAATGGTTTTCTAGCTACTG 57.086 36.000 0.00 0.00 33.49 2.74
553 555 3.057456 TCGTCTACTCTTGTCTTGCCTTC 60.057 47.826 0.00 0.00 0.00 3.46
705 711 2.711922 GCGGGGCCTATCGATCGAT 61.712 63.158 31.39 31.39 38.54 3.59
722 728 0.744771 GAAGTGAGGATCGGTTGGGC 60.745 60.000 0.00 0.00 38.61 5.36
777 783 2.024846 TGTGAGGAGAGAGTTAGGAGGG 60.025 54.545 0.00 0.00 0.00 4.30
809 815 0.961857 TCGTTGCCGTAGCCTGTAGA 60.962 55.000 0.00 0.00 38.69 2.59
810 816 0.108992 TTCGTTGCCGTAGCCTGTAG 60.109 55.000 0.00 0.00 38.69 2.74
811 817 0.108992 CTTCGTTGCCGTAGCCTGTA 60.109 55.000 0.00 0.00 38.69 2.74
812 818 1.374252 CTTCGTTGCCGTAGCCTGT 60.374 57.895 0.00 0.00 38.69 4.00
813 819 3.474806 CTTCGTTGCCGTAGCCTG 58.525 61.111 0.00 0.00 38.69 4.85
1062 1082 3.593794 GTAGGATCGGCGGCGAGT 61.594 66.667 36.74 25.63 0.00 4.18
1116 1157 4.446371 AGTGCATTGATTCTAGCAGTACC 58.554 43.478 0.00 0.00 38.75 3.34
1184 1248 4.331108 AGAGGAACTTGCTCCAATTCTTC 58.669 43.478 6.68 0.00 41.55 2.87
1185 1249 4.379302 AGAGGAACTTGCTCCAATTCTT 57.621 40.909 6.68 0.00 41.55 2.52
1186 1250 4.379302 AAGAGGAACTTGCTCCAATTCT 57.621 40.909 6.68 0.00 41.55 2.40
1216 1318 4.037089 GTCCAACCAAATTTACGAACCACT 59.963 41.667 0.00 0.00 0.00 4.00
1218 1320 3.318557 GGTCCAACCAAATTTACGAACCA 59.681 43.478 0.00 0.00 38.42 3.67
1219 1321 3.609879 CGGTCCAACCAAATTTACGAACC 60.610 47.826 0.00 0.00 38.47 3.62
1222 1324 2.152830 CCGGTCCAACCAAATTTACGA 58.847 47.619 0.00 0.00 38.47 3.43
1262 1373 3.181439 GGCCCATGCTAATCTACTCCTTT 60.181 47.826 0.00 0.00 37.74 3.11
1321 1432 3.001533 GGCAACAAAAACATCAGCAAGTG 59.998 43.478 0.00 0.00 0.00 3.16
1357 1525 1.330779 CGTCGTCGTCTGCAACTGAG 61.331 60.000 0.00 0.00 0.00 3.35
1392 1952 1.127582 GCGTCTCTGATTGTGCTGTTC 59.872 52.381 0.00 0.00 0.00 3.18
1435 1995 2.421424 AGAACCGTACGTAGTTAGGCAG 59.579 50.000 15.21 0.00 37.78 4.85
1440 2000 4.023279 TGCAAGAAGAACCGTACGTAGTTA 60.023 41.667 15.21 0.00 37.78 2.24
1442 2002 6.855907 GGTGCAAGAAGAACCGTACGTAGT 62.856 50.000 15.21 2.62 39.93 2.73
1451 2011 1.896660 TGCCGGTGCAAGAAGAACC 60.897 57.895 1.90 0.00 46.66 3.62
1584 2187 4.218686 AGGTGGTGGTGGTTGGGC 62.219 66.667 0.00 0.00 0.00 5.36
1601 2207 4.507916 CGCGGAGGAGGAGGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
1621 2227 0.902531 GGATGTTGAGGAGGACGGAA 59.097 55.000 0.00 0.00 0.00 4.30
1790 2396 0.324830 GAGTAGGAGGAGGCACAGGT 60.325 60.000 0.00 0.00 0.00 4.00
1794 2400 2.787567 GGCGAGTAGGAGGAGGCAC 61.788 68.421 0.00 0.00 0.00 5.01
2010 2790 1.479709 CGATCCTCTGGTCTGGTCTT 58.520 55.000 0.00 0.00 0.00 3.01
2042 2825 4.631813 GTCATCGTTGAACTTTAGGCTGAT 59.368 41.667 0.00 0.00 32.48 2.90
2161 2951 1.204941 CCAGGGAAAGACGTACAGAGG 59.795 57.143 0.00 0.00 0.00 3.69
2180 2970 1.066143 TCGATTGCTTCTGGAAGGACC 60.066 52.381 11.61 3.74 38.50 4.46
2181 2971 2.386661 TCGATTGCTTCTGGAAGGAC 57.613 50.000 11.61 0.00 38.50 3.85
2203 2993 1.647084 GTGGTTTTTCGTCTGCGCT 59.353 52.632 9.73 0.00 38.14 5.92
2255 3048 3.744719 CGTCCCTCTTCGCCGTCA 61.745 66.667 0.00 0.00 0.00 4.35
2635 3437 7.271936 TCGAAACTGTCAAAAATGAACAAAC 57.728 32.000 0.00 0.00 0.00 2.93
2666 3499 9.660180 AAAGTTTTTACTGCTAACAAATGGAAA 57.340 25.926 0.00 0.00 0.00 3.13
2669 3502 9.313118 AGAAAAGTTTTTACTGCTAACAAATGG 57.687 29.630 1.64 0.00 0.00 3.16
2745 3582 6.714810 TGCTGGTGTGTGAGAATACTTAAATT 59.285 34.615 0.00 0.00 0.00 1.82
2753 3590 3.866066 GCTTCTGCTGGTGTGTGAGAATA 60.866 47.826 0.00 0.00 36.03 1.75
2754 3591 2.775890 CTTCTGCTGGTGTGTGAGAAT 58.224 47.619 0.00 0.00 0.00 2.40
2833 3681 2.922335 GCTCAAAGAAATGCACCCGAAC 60.922 50.000 0.00 0.00 0.00 3.95
2892 3764 3.752665 CAGAATCCCCTGGATCATTCAG 58.247 50.000 0.00 0.00 42.27 3.02
2949 3825 5.483685 TGTATACCTTGTTCTTCAGTGCT 57.516 39.130 0.00 0.00 0.00 4.40
2985 3861 6.923508 CAGTTCCTTTGTACCAGAAAATTTCC 59.076 38.462 1.57 0.00 0.00 3.13
2994 3871 4.969484 AGGTTACAGTTCCTTTGTACCAG 58.031 43.478 0.00 0.00 31.17 4.00
3005 4009 6.313744 AGCAACACATAAAGGTTACAGTTC 57.686 37.500 0.00 0.00 0.00 3.01
3008 4012 5.473504 AGGAAGCAACACATAAAGGTTACAG 59.526 40.000 0.00 0.00 0.00 2.74
3015 4019 7.865706 AAGGTATAGGAAGCAACACATAAAG 57.134 36.000 0.00 0.00 0.00 1.85
3052 4056 3.960102 TGAACTTCTGCCCTGAAACATTT 59.040 39.130 0.00 0.00 0.00 2.32
3240 4279 2.435805 ACTCCTCACTTGTTGCTCTTCA 59.564 45.455 0.00 0.00 0.00 3.02
3346 4385 7.399245 TTGATTTATTAGTTGTGTTAGGGGC 57.601 36.000 0.00 0.00 0.00 5.80
3439 4564 7.549839 AGCAACTCACAATTAATATGCATGTT 58.450 30.769 13.54 13.54 35.11 2.71
3494 4771 1.139654 CTTCTCCAGATCCGCCATCAA 59.860 52.381 0.00 0.00 33.29 2.57
3597 4874 2.250939 TCCTTGGCAAAGTCGTGCG 61.251 57.895 0.00 0.00 45.91 5.34
3684 4961 4.785453 GCCCCCTCAAGCAGTCCG 62.785 72.222 0.00 0.00 0.00 4.79
3776 5071 7.271223 CACTTAACTTGAAACAAATAGCGGATG 59.729 37.037 0.00 0.00 0.00 3.51
3779 5074 6.435428 ACACTTAACTTGAAACAAATAGCGG 58.565 36.000 0.00 0.00 0.00 5.52
3994 5454 2.863704 GCAGAAATTGGGTGTTGCTCAC 60.864 50.000 4.47 4.47 45.47 3.51
4008 5468 4.141937 TGTCCGTCTTAGCTATGCAGAAAT 60.142 41.667 0.00 0.00 0.00 2.17
4020 5480 4.390909 GGTATTTGGTTGTGTCCGTCTTAG 59.609 45.833 0.00 0.00 0.00 2.18
4026 5486 2.882137 AGTTGGTATTTGGTTGTGTCCG 59.118 45.455 0.00 0.00 0.00 4.79
4071 5531 1.089920 ATTGCTGCCGATCTGTCAAC 58.910 50.000 0.00 0.00 0.00 3.18
4078 5538 4.452114 TGTATGACATTATTGCTGCCGATC 59.548 41.667 0.00 0.00 0.00 3.69
4113 5574 2.041115 GCGAGCAAGGGGAAGTTCC 61.041 63.158 13.99 13.99 35.23 3.62
4176 5639 2.352561 TGGGTAAGGAAGATGGGTCA 57.647 50.000 0.00 0.00 0.00 4.02
4210 5673 4.760047 GCTCGCCGGCTTTCTCCA 62.760 66.667 26.68 0.00 0.00 3.86
4215 5678 4.043200 GCTTTGCTCGCCGGCTTT 62.043 61.111 26.68 0.00 0.00 3.51
4319 5782 3.869272 GGCTCCAACGATGCGCAG 61.869 66.667 18.32 5.51 0.00 5.18
4323 5786 1.372087 CTTCCTGGCTCCAACGATGC 61.372 60.000 0.00 0.00 0.00 3.91
4325 5788 1.078143 GCTTCCTGGCTCCAACGAT 60.078 57.895 0.00 0.00 0.00 3.73
4328 5791 3.993535 CAGCTTCCTGGCTCCAAC 58.006 61.111 0.00 0.00 41.00 3.77
4396 5860 4.015406 CTGCCCACCACGCTACCA 62.015 66.667 0.00 0.00 0.00 3.25
4444 5908 3.410628 TGCATCTGGGCACGGGAT 61.411 61.111 0.00 0.00 39.25 3.85
4459 5923 4.332637 CCGCCGCCAGCATAATGC 62.333 66.667 0.00 0.00 45.46 3.56
4496 5960 4.488136 CCACGCATAGGGCTGCCA 62.488 66.667 22.05 0.00 41.67 4.92
4506 5970 3.876589 GACACCGACACCCACGCAT 62.877 63.158 0.00 0.00 0.00 4.73
4510 5974 0.379316 GTTTTGACACCGACACCCAC 59.621 55.000 0.00 0.00 0.00 4.61
4519 5983 1.652563 GTCTGCCGGTTTTGACACC 59.347 57.895 1.90 0.00 0.00 4.16
4520 5984 0.818040 AGGTCTGCCGGTTTTGACAC 60.818 55.000 1.90 1.81 40.50 3.67
4521 5985 0.534203 GAGGTCTGCCGGTTTTGACA 60.534 55.000 1.90 0.00 40.50 3.58
4522 5986 1.566018 CGAGGTCTGCCGGTTTTGAC 61.566 60.000 1.90 6.52 40.50 3.18
4523 5987 1.301401 CGAGGTCTGCCGGTTTTGA 60.301 57.895 1.90 0.00 40.50 2.69
4524 5988 2.325082 CCGAGGTCTGCCGGTTTTG 61.325 63.158 1.90 0.00 40.78 2.44
4525 5989 2.032071 CCGAGGTCTGCCGGTTTT 59.968 61.111 1.90 0.00 40.78 2.43
4526 5990 4.016706 CCCGAGGTCTGCCGGTTT 62.017 66.667 1.90 0.00 43.93 3.27
4530 5994 3.528370 CTACCCCGAGGTCTGCCG 61.528 72.222 0.00 0.00 46.45 5.69
4531 5995 3.155167 CCTACCCCGAGGTCTGCC 61.155 72.222 0.00 0.00 46.45 4.85
4532 5996 3.155167 CCCTACCCCGAGGTCTGC 61.155 72.222 0.00 0.00 46.45 4.26
4533 5997 2.444140 CCCCTACCCCGAGGTCTG 60.444 72.222 0.00 0.00 46.45 3.51
4534 5998 3.763757 CCCCCTACCCCGAGGTCT 61.764 72.222 0.00 0.00 46.45 3.85
4535 5999 3.630740 AACCCCCTACCCCGAGGTC 62.631 68.421 0.00 0.00 46.45 3.85
4537 6001 2.767073 GAACCCCCTACCCCGAGG 60.767 72.222 0.00 0.00 40.04 4.63
4538 6002 2.767073 GGAACCCCCTACCCCGAG 60.767 72.222 0.00 0.00 0.00 4.63
4539 6003 4.783501 CGGAACCCCCTACCCCGA 62.784 72.222 0.00 0.00 42.49 5.14
4540 6004 4.783501 TCGGAACCCCCTACCCCG 62.784 72.222 0.00 0.00 41.36 5.73
4541 6005 2.767073 CTCGGAACCCCCTACCCC 60.767 72.222 0.00 0.00 0.00 4.95
4542 6006 3.477346 GCTCGGAACCCCCTACCC 61.477 72.222 0.00 0.00 0.00 3.69
4543 6007 2.365237 AGCTCGGAACCCCCTACC 60.365 66.667 0.00 0.00 0.00 3.18
4544 6008 1.988406 ACAGCTCGGAACCCCCTAC 60.988 63.158 0.00 0.00 0.00 3.18
4545 6009 1.987855 CACAGCTCGGAACCCCCTA 60.988 63.158 0.00 0.00 0.00 3.53
4546 6010 3.322466 CACAGCTCGGAACCCCCT 61.322 66.667 0.00 0.00 0.00 4.79
4547 6011 4.410400 CCACAGCTCGGAACCCCC 62.410 72.222 0.00 0.00 0.00 5.40
4548 6012 2.595009 GATCCACAGCTCGGAACCCC 62.595 65.000 5.50 0.00 35.77 4.95
4549 6013 1.153349 GATCCACAGCTCGGAACCC 60.153 63.158 5.50 0.00 35.77 4.11
4550 6014 0.179097 GAGATCCACAGCTCGGAACC 60.179 60.000 5.50 1.83 35.77 3.62
4551 6015 3.354131 GAGATCCACAGCTCGGAAC 57.646 57.895 5.50 3.44 35.77 3.62
4556 6020 0.039617 CGATCCGAGATCCACAGCTC 60.040 60.000 7.91 0.00 0.00 4.09
4557 6021 0.466372 TCGATCCGAGATCCACAGCT 60.466 55.000 7.91 0.00 0.00 4.24
4558 6022 2.033793 TCGATCCGAGATCCACAGC 58.966 57.895 7.91 0.00 0.00 4.40
4568 6032 0.256752 TCCTGTTACCCTCGATCCGA 59.743 55.000 0.00 0.00 0.00 4.55
4569 6033 1.108776 TTCCTGTTACCCTCGATCCG 58.891 55.000 0.00 0.00 0.00 4.18
4570 6034 1.202382 CGTTCCTGTTACCCTCGATCC 60.202 57.143 0.00 0.00 0.00 3.36
4571 6035 1.747355 TCGTTCCTGTTACCCTCGATC 59.253 52.381 0.00 0.00 0.00 3.69
4572 6036 1.843368 TCGTTCCTGTTACCCTCGAT 58.157 50.000 0.00 0.00 0.00 3.59
4573 6037 1.542915 CTTCGTTCCTGTTACCCTCGA 59.457 52.381 0.00 0.00 0.00 4.04
4574 6038 1.403780 CCTTCGTTCCTGTTACCCTCG 60.404 57.143 0.00 0.00 0.00 4.63
4575 6039 1.897802 TCCTTCGTTCCTGTTACCCTC 59.102 52.381 0.00 0.00 0.00 4.30
4576 6040 1.900486 CTCCTTCGTTCCTGTTACCCT 59.100 52.381 0.00 0.00 0.00 4.34
4577 6041 1.622312 ACTCCTTCGTTCCTGTTACCC 59.378 52.381 0.00 0.00 0.00 3.69
4578 6042 2.670509 CGACTCCTTCGTTCCTGTTACC 60.671 54.545 0.00 0.00 43.24 2.85
4579 6043 2.593257 CGACTCCTTCGTTCCTGTTAC 58.407 52.381 0.00 0.00 43.24 2.50
4581 6045 3.888093 CGACTCCTTCGTTCCTGTT 57.112 52.632 0.00 0.00 43.24 3.16
4590 6054 4.799428 GCACTAGTAAACATCGACTCCTTC 59.201 45.833 0.00 0.00 0.00 3.46
4591 6055 4.463186 AGCACTAGTAAACATCGACTCCTT 59.537 41.667 0.00 0.00 0.00 3.36
4592 6056 4.017808 AGCACTAGTAAACATCGACTCCT 58.982 43.478 0.00 0.00 0.00 3.69
4593 6057 4.352887 GAGCACTAGTAAACATCGACTCC 58.647 47.826 0.00 0.00 0.00 3.85
4594 6058 4.096682 AGGAGCACTAGTAAACATCGACTC 59.903 45.833 0.00 0.00 0.00 3.36
4595 6059 4.017808 AGGAGCACTAGTAAACATCGACT 58.982 43.478 0.00 0.00 0.00 4.18
4596 6060 4.096682 AGAGGAGCACTAGTAAACATCGAC 59.903 45.833 0.00 0.00 0.00 4.20
4597 6061 4.270834 AGAGGAGCACTAGTAAACATCGA 58.729 43.478 0.00 0.00 0.00 3.59
4598 6062 4.336993 AGAGAGGAGCACTAGTAAACATCG 59.663 45.833 0.00 0.00 0.00 3.84
4599 6063 5.358442 TCAGAGAGGAGCACTAGTAAACATC 59.642 44.000 0.00 0.00 0.00 3.06
4600 6064 5.265191 TCAGAGAGGAGCACTAGTAAACAT 58.735 41.667 0.00 0.00 0.00 2.71
4601 6065 4.663334 TCAGAGAGGAGCACTAGTAAACA 58.337 43.478 0.00 0.00 0.00 2.83
4602 6066 5.243426 CTCAGAGAGGAGCACTAGTAAAC 57.757 47.826 0.00 0.00 0.00 2.01
4613 6077 1.042559 GTGGGAGGCTCAGAGAGGAG 61.043 65.000 17.69 0.00 37.97 3.69
4614 6078 1.000993 GTGGGAGGCTCAGAGAGGA 59.999 63.158 17.69 0.00 0.00 3.71
4615 6079 1.001503 AGTGGGAGGCTCAGAGAGG 59.998 63.158 17.69 0.00 0.00 3.69
4616 6080 0.033208 AGAGTGGGAGGCTCAGAGAG 60.033 60.000 17.69 0.00 35.55 3.20
4617 6081 0.324183 CAGAGTGGGAGGCTCAGAGA 60.324 60.000 17.69 0.00 35.55 3.10
4618 6082 1.958902 GCAGAGTGGGAGGCTCAGAG 61.959 65.000 17.69 0.00 35.55 3.35
4619 6083 1.986757 GCAGAGTGGGAGGCTCAGA 60.987 63.158 17.69 0.00 35.55 3.27
4620 6084 2.583520 GCAGAGTGGGAGGCTCAG 59.416 66.667 17.69 0.00 35.55 3.35
4621 6085 3.005539 GGCAGAGTGGGAGGCTCA 61.006 66.667 17.69 0.00 35.55 4.26
4622 6086 4.154347 CGGCAGAGTGGGAGGCTC 62.154 72.222 5.78 5.78 0.00 4.70
4625 6089 2.411765 AAAACCGGCAGAGTGGGAGG 62.412 60.000 0.00 0.00 0.00 4.30
4626 6090 1.073199 AAAACCGGCAGAGTGGGAG 59.927 57.895 0.00 0.00 0.00 4.30
4627 6091 1.228124 CAAAACCGGCAGAGTGGGA 60.228 57.895 0.00 0.00 0.00 4.37
4628 6092 1.228124 TCAAAACCGGCAGAGTGGG 60.228 57.895 0.00 0.00 0.00 4.61
4629 6093 0.817634 TGTCAAAACCGGCAGAGTGG 60.818 55.000 0.00 0.00 0.00 4.00
4630 6094 1.197721 GATGTCAAAACCGGCAGAGTG 59.802 52.381 0.00 0.00 0.00 3.51
4631 6095 1.523758 GATGTCAAAACCGGCAGAGT 58.476 50.000 0.00 0.00 0.00 3.24
4632 6096 0.443869 CGATGTCAAAACCGGCAGAG 59.556 55.000 0.00 0.00 0.00 3.35
4633 6097 0.034198 TCGATGTCAAAACCGGCAGA 59.966 50.000 0.00 0.00 0.00 4.26
4634 6098 0.165944 GTCGATGTCAAAACCGGCAG 59.834 55.000 0.00 0.00 0.00 4.85
4635 6099 0.533085 TGTCGATGTCAAAACCGGCA 60.533 50.000 0.00 0.00 34.08 5.69
4636 6100 0.110373 GTGTCGATGTCAAAACCGGC 60.110 55.000 0.00 0.00 0.00 6.13
4637 6101 0.515564 GGTGTCGATGTCAAAACCGG 59.484 55.000 0.00 0.00 0.00 5.28
4638 6102 0.162933 CGGTGTCGATGTCAAAACCG 59.837 55.000 0.00 0.00 43.83 4.44
4639 6103 0.515564 CCGGTGTCGATGTCAAAACC 59.484 55.000 0.00 0.00 39.00 3.27
4640 6104 1.070175 CACCGGTGTCGATGTCAAAAC 60.070 52.381 26.95 0.00 39.00 2.43
4641 6105 1.222300 CACCGGTGTCGATGTCAAAA 58.778 50.000 26.95 0.00 39.00 2.44
4642 6106 1.225376 GCACCGGTGTCGATGTCAAA 61.225 55.000 33.92 0.00 39.00 2.69
4643 6107 1.666553 GCACCGGTGTCGATGTCAA 60.667 57.895 33.92 0.00 39.00 3.18
4644 6108 2.048597 GCACCGGTGTCGATGTCA 60.049 61.111 33.92 0.00 39.00 3.58
4645 6109 0.949105 AAAGCACCGGTGTCGATGTC 60.949 55.000 33.92 16.50 39.00 3.06
4646 6110 0.949105 GAAAGCACCGGTGTCGATGT 60.949 55.000 33.92 14.28 39.00 3.06
4647 6111 0.948623 TGAAAGCACCGGTGTCGATG 60.949 55.000 33.92 9.92 39.00 3.84
4648 6112 0.036388 ATGAAAGCACCGGTGTCGAT 60.036 50.000 33.92 18.71 39.00 3.59
4649 6113 0.250124 AATGAAAGCACCGGTGTCGA 60.250 50.000 33.92 15.23 39.00 4.20
4650 6114 0.110238 CAATGAAAGCACCGGTGTCG 60.110 55.000 33.92 11.47 0.00 4.35
4651 6115 1.197721 CTCAATGAAAGCACCGGTGTC 59.802 52.381 33.92 25.30 0.00 3.67
4652 6116 1.202758 TCTCAATGAAAGCACCGGTGT 60.203 47.619 33.92 18.91 0.00 4.16
4653 6117 1.466167 CTCTCAATGAAAGCACCGGTG 59.534 52.381 30.66 30.66 0.00 4.94
4654 6118 1.072331 ACTCTCAATGAAAGCACCGGT 59.928 47.619 0.00 0.00 0.00 5.28
4655 6119 1.734465 GACTCTCAATGAAAGCACCGG 59.266 52.381 0.00 0.00 0.00 5.28
4656 6120 1.734465 GGACTCTCAATGAAAGCACCG 59.266 52.381 0.00 0.00 0.00 4.94
4657 6121 2.087646 GGGACTCTCAATGAAAGCACC 58.912 52.381 0.00 0.00 0.00 5.01
4658 6122 1.734465 CGGGACTCTCAATGAAAGCAC 59.266 52.381 0.00 0.00 0.00 4.40
4659 6123 1.945819 GCGGGACTCTCAATGAAAGCA 60.946 52.381 0.00 0.00 0.00 3.91
4660 6124 0.729690 GCGGGACTCTCAATGAAAGC 59.270 55.000 0.00 0.00 0.00 3.51
4661 6125 2.005451 CAGCGGGACTCTCAATGAAAG 58.995 52.381 0.00 0.00 0.00 2.62
4662 6126 1.347707 ACAGCGGGACTCTCAATGAAA 59.652 47.619 0.00 0.00 0.00 2.69
4663 6127 0.976641 ACAGCGGGACTCTCAATGAA 59.023 50.000 0.00 0.00 0.00 2.57
4664 6128 0.247460 CACAGCGGGACTCTCAATGA 59.753 55.000 0.00 0.00 0.00 2.57
4665 6129 1.364626 GCACAGCGGGACTCTCAATG 61.365 60.000 0.00 0.00 0.00 2.82
4666 6130 1.078848 GCACAGCGGGACTCTCAAT 60.079 57.895 0.00 0.00 0.00 2.57
4667 6131 2.038814 TTGCACAGCGGGACTCTCAA 62.039 55.000 0.00 0.00 0.00 3.02
4668 6132 1.830587 ATTGCACAGCGGGACTCTCA 61.831 55.000 0.00 0.00 0.00 3.27
4669 6133 1.078848 ATTGCACAGCGGGACTCTC 60.079 57.895 0.00 0.00 0.00 3.20
4670 6134 1.078848 GATTGCACAGCGGGACTCT 60.079 57.895 0.00 0.00 0.00 3.24
4671 6135 1.375908 TGATTGCACAGCGGGACTC 60.376 57.895 0.00 0.00 0.00 3.36
4672 6136 1.672356 GTGATTGCACAGCGGGACT 60.672 57.895 0.00 0.00 44.51 3.85
4673 6137 2.870372 GTGATTGCACAGCGGGAC 59.130 61.111 0.00 0.00 44.51 4.46
4681 6145 2.094182 TCGACCCTTCTAGTGATTGCAC 60.094 50.000 0.00 0.00 45.49 4.57
4682 6146 2.176045 TCGACCCTTCTAGTGATTGCA 58.824 47.619 0.00 0.00 0.00 4.08
4683 6147 2.961526 TCGACCCTTCTAGTGATTGC 57.038 50.000 0.00 0.00 0.00 3.56
4684 6148 3.722147 CCATCGACCCTTCTAGTGATTG 58.278 50.000 0.00 0.00 0.00 2.67
4685 6149 2.103263 GCCATCGACCCTTCTAGTGATT 59.897 50.000 0.00 0.00 0.00 2.57
4686 6150 1.689273 GCCATCGACCCTTCTAGTGAT 59.311 52.381 0.00 0.00 0.00 3.06
4687 6151 1.112113 GCCATCGACCCTTCTAGTGA 58.888 55.000 0.00 0.00 0.00 3.41
4688 6152 1.067821 GAGCCATCGACCCTTCTAGTG 59.932 57.143 0.00 0.00 0.00 2.74
4689 6153 1.342076 TGAGCCATCGACCCTTCTAGT 60.342 52.381 0.00 0.00 0.00 2.57
4690 6154 1.067821 GTGAGCCATCGACCCTTCTAG 59.932 57.143 0.00 0.00 0.00 2.43
4691 6155 1.112113 GTGAGCCATCGACCCTTCTA 58.888 55.000 0.00 0.00 0.00 2.10
4692 6156 1.617947 GGTGAGCCATCGACCCTTCT 61.618 60.000 0.00 0.00 34.09 2.85
4693 6157 1.153349 GGTGAGCCATCGACCCTTC 60.153 63.158 0.00 0.00 34.09 3.46
4694 6158 1.613630 AGGTGAGCCATCGACCCTT 60.614 57.895 0.00 0.00 37.19 3.95
4695 6159 2.039624 AGGTGAGCCATCGACCCT 59.960 61.111 0.00 0.00 37.19 4.34
4696 6160 2.187946 CAGGTGAGCCATCGACCC 59.812 66.667 0.00 0.00 37.19 4.46
4697 6161 2.512515 GCAGGTGAGCCATCGACC 60.513 66.667 0.00 0.00 37.19 4.79
4698 6162 0.104855 TATGCAGGTGAGCCATCGAC 59.895 55.000 0.00 0.00 37.19 4.20
4699 6163 1.001293 GATATGCAGGTGAGCCATCGA 59.999 52.381 0.00 0.00 37.19 3.59
4700 6164 1.270465 TGATATGCAGGTGAGCCATCG 60.270 52.381 0.00 0.00 37.19 3.84
4701 6165 2.551459 GTTGATATGCAGGTGAGCCATC 59.449 50.000 0.00 0.00 37.19 3.51
4702 6166 2.174210 AGTTGATATGCAGGTGAGCCAT 59.826 45.455 0.00 0.00 37.19 4.40
4703 6167 1.561076 AGTTGATATGCAGGTGAGCCA 59.439 47.619 0.00 0.00 37.19 4.75
4704 6168 2.338577 AGTTGATATGCAGGTGAGCC 57.661 50.000 0.00 0.00 0.00 4.70
4705 6169 2.797156 CGTAGTTGATATGCAGGTGAGC 59.203 50.000 0.00 0.00 0.00 4.26
4706 6170 2.797156 GCGTAGTTGATATGCAGGTGAG 59.203 50.000 0.00 0.00 44.51 3.51
4707 6171 2.483013 GGCGTAGTTGATATGCAGGTGA 60.483 50.000 0.00 0.00 46.55 4.02
4708 6172 1.867233 GGCGTAGTTGATATGCAGGTG 59.133 52.381 0.00 0.00 46.55 4.00
4709 6173 1.484653 TGGCGTAGTTGATATGCAGGT 59.515 47.619 0.00 0.00 46.55 4.00
4710 6174 2.238942 TGGCGTAGTTGATATGCAGG 57.761 50.000 0.00 0.00 46.55 4.85
4711 6175 2.033747 CGTTGGCGTAGTTGATATGCAG 60.034 50.000 0.00 0.00 46.55 4.41
4712 6176 1.930503 CGTTGGCGTAGTTGATATGCA 59.069 47.619 0.00 0.00 46.55 3.96
4713 6177 1.260561 CCGTTGGCGTAGTTGATATGC 59.739 52.381 0.00 0.00 44.41 3.14
4714 6178 1.260561 GCCGTTGGCGTAGTTGATATG 59.739 52.381 0.00 0.00 39.62 1.78
4715 6179 1.578583 GCCGTTGGCGTAGTTGATAT 58.421 50.000 0.00 0.00 39.62 1.63
4716 6180 3.053662 GCCGTTGGCGTAGTTGATA 57.946 52.632 0.00 0.00 39.62 2.15
4717 6181 3.884900 GCCGTTGGCGTAGTTGAT 58.115 55.556 0.00 0.00 39.62 2.57
4743 6207 4.376176 TGGTCGGGGGCGTAAACG 62.376 66.667 0.00 0.00 43.27 3.60
4744 6208 2.435410 CTGGTCGGGGGCGTAAAC 60.435 66.667 0.00 0.00 0.00 2.01
4745 6209 4.397832 GCTGGTCGGGGGCGTAAA 62.398 66.667 0.00 0.00 0.00 2.01
4750 6214 2.600470 AAAAAGCTGGTCGGGGGC 60.600 61.111 0.00 0.00 0.00 5.80
4751 6215 1.530655 ACAAAAAGCTGGTCGGGGG 60.531 57.895 0.00 0.00 0.00 5.40
4752 6216 1.106944 ACACAAAAAGCTGGTCGGGG 61.107 55.000 0.00 0.00 0.00 5.73
4753 6217 0.744281 AACACAAAAAGCTGGTCGGG 59.256 50.000 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.