Multiple sequence alignment - TraesCS1D01G073100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G073100 chr1D 100.000 4556 0 0 1 4556 53967900 53963345 0.000000e+00 8414.0
1 TraesCS1D01G073100 chr1B 93.316 3366 138 46 459 3799 88005590 88002287 0.000000e+00 4889.0
2 TraesCS1D01G073100 chr1B 91.220 410 26 7 3892 4292 88002238 88001830 2.400000e-152 549.0
3 TraesCS1D01G073100 chr1B 89.888 89 9 0 1691 1779 23129057 23128969 1.040000e-21 115.0
4 TraesCS1D01G073100 chr1A 93.479 3205 136 28 616 3799 53457420 53454268 0.000000e+00 4693.0
5 TraesCS1D01G073100 chr1A 89.331 553 42 8 1081 1632 367003968 367003432 0.000000e+00 678.0
6 TraesCS1D01G073100 chr1A 84.776 670 52 15 3892 4535 53454193 53453548 1.080000e-175 627.0
7 TraesCS1D01G073100 chr1A 88.038 209 17 4 103 303 53457945 53457737 1.640000e-59 241.0
8 TraesCS1D01G073100 chr1A 93.636 110 7 0 1092 1201 366990022 366990131 1.010000e-36 165.0
9 TraesCS1D01G073100 chr1A 95.238 63 2 1 2601 2662 366990213 366990151 1.040000e-16 99.0
10 TraesCS1D01G073100 chr1A 97.297 37 1 0 529 565 53457476 53457440 3.810000e-06 63.9
11 TraesCS1D01G073100 chr5D 93.775 1253 55 9 2383 3629 362895113 362893878 0.000000e+00 1860.0
12 TraesCS1D01G073100 chr5D 89.562 594 38 11 1072 1664 362895726 362895156 0.000000e+00 732.0
13 TraesCS1D01G073100 chr5D 93.373 166 11 0 1809 1974 455841037 455840872 3.520000e-61 246.0
14 TraesCS1D01G073100 chr5D 89.474 133 13 1 2345 2477 68877091 68876960 2.820000e-37 167.0
15 TraesCS1D01G073100 chr5D 90.090 111 10 1 1703 1812 455857699 455857589 4.750000e-30 143.0
16 TraesCS1D01G073100 chr5D 77.523 218 27 15 912 1124 455867281 455867081 1.340000e-20 111.0
17 TraesCS1D01G073100 chr5D 96.154 52 1 1 2251 2302 68877096 68877146 2.920000e-12 84.2
18 TraesCS1D01G073100 chr4A 93.769 979 48 6 2653 3629 609791532 609790565 0.000000e+00 1458.0
19 TraesCS1D01G073100 chr4A 90.461 304 20 4 1114 1417 609794222 609793928 4.270000e-105 392.0
20 TraesCS1D01G073100 chr4A 92.029 276 22 0 2382 2657 609792552 609792277 5.530000e-104 388.0
21 TraesCS1D01G073100 chr4A 73.900 682 123 43 2663 3321 497441026 497440377 5.930000e-54 222.0
22 TraesCS1D01G073100 chr5B 88.528 1046 102 12 2381 3423 527294211 527295241 0.000000e+00 1251.0
23 TraesCS1D01G073100 chr2B 91.011 356 23 4 1072 1427 818195 817849 5.340000e-129 472.0
24 TraesCS1D01G073100 chr2B 87.179 273 27 4 1395 1666 816423 816158 2.060000e-78 303.0
25 TraesCS1D01G073100 chr2B 97.321 112 3 0 2382 2493 816118 816007 1.670000e-44 191.0
26 TraesCS1D01G073100 chr2B 73.930 514 93 32 2663 3169 464466551 464467030 7.840000e-38 169.0
27 TraesCS1D01G073100 chr4B 75.530 519 91 26 2663 3169 119823385 119822891 5.930000e-54 222.0
28 TraesCS1D01G073100 chr7B 73.380 710 139 33 2473 3169 418049731 418049059 7.670000e-53 219.0
29 TraesCS1D01G073100 chr7B 83.230 161 18 7 2938 3095 302514019 302513865 6.150000e-29 139.0
30 TraesCS1D01G073100 chr7B 81.366 161 21 7 2938 3095 302547228 302547074 6.190000e-24 122.0
31 TraesCS1D01G073100 chr7A 73.418 711 137 33 2473 3169 464573337 464572665 7.670000e-53 219.0
32 TraesCS1D01G073100 chr7A 91.935 124 10 0 2340 2463 728230019 728230142 1.680000e-39 174.0
33 TraesCS1D01G073100 chr4D 74.953 527 89 29 2663 3169 84546200 84545697 7.730000e-48 202.0
34 TraesCS1D01G073100 chr2D 74.648 497 86 32 2678 3169 392525947 392526408 2.800000e-42 183.0
35 TraesCS1D01G073100 chr3D 90.511 137 9 1 2345 2477 594157372 594157236 1.300000e-40 178.0
36 TraesCS1D01G073100 chr3D 97.333 75 2 0 3169 3243 594156674 594156600 1.330000e-25 128.0
37 TraesCS1D01G073100 chr3D 85.714 56 8 0 2710 2765 51682754 51682809 4.920000e-05 60.2
38 TraesCS1D01G073100 chr3A 82.967 182 30 1 1871 2052 468721143 468721323 3.650000e-36 163.0
39 TraesCS1D01G073100 chr7D 88.636 132 7 1 2340 2463 637568892 637569023 2.190000e-33 154.0
40 TraesCS1D01G073100 chr3B 93.750 96 5 1 2875 2969 797135330 797135235 4.750000e-30 143.0
41 TraesCS1D01G073100 chr3B 84.337 83 3 2 3169 3250 797134709 797134636 6.320000e-09 73.1
42 TraesCS1D01G073100 chr3B 81.818 66 12 0 2700 2765 82625827 82625892 6.370000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G073100 chr1D 53963345 53967900 4555 True 8414.000 8414 100.000000 1 4556 1 chr1D.!!$R1 4555
1 TraesCS1D01G073100 chr1B 88001830 88005590 3760 True 2719.000 4889 92.268000 459 4292 2 chr1B.!!$R2 3833
2 TraesCS1D01G073100 chr1A 53453548 53457945 4397 True 1406.225 4693 90.897500 103 4535 4 chr1A.!!$R3 4432
3 TraesCS1D01G073100 chr1A 367003432 367003968 536 True 678.000 678 89.331000 1081 1632 1 chr1A.!!$R2 551
4 TraesCS1D01G073100 chr5D 362893878 362895726 1848 True 1296.000 1860 91.668500 1072 3629 2 chr5D.!!$R5 2557
5 TraesCS1D01G073100 chr4A 609790565 609794222 3657 True 746.000 1458 92.086333 1114 3629 3 chr4A.!!$R2 2515
6 TraesCS1D01G073100 chr4A 497440377 497441026 649 True 222.000 222 73.900000 2663 3321 1 chr4A.!!$R1 658
7 TraesCS1D01G073100 chr5B 527294211 527295241 1030 False 1251.000 1251 88.528000 2381 3423 1 chr5B.!!$F1 1042
8 TraesCS1D01G073100 chr2B 816007 818195 2188 True 322.000 472 91.837000 1072 2493 3 chr2B.!!$R1 1421
9 TraesCS1D01G073100 chr7B 418049059 418049731 672 True 219.000 219 73.380000 2473 3169 1 chr7B.!!$R3 696
10 TraesCS1D01G073100 chr7A 464572665 464573337 672 True 219.000 219 73.418000 2473 3169 1 chr7A.!!$R1 696
11 TraesCS1D01G073100 chr4D 84545697 84546200 503 True 202.000 202 74.953000 2663 3169 1 chr4D.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.031857 CCGTTCACAATTGCAAGGCA 59.968 50.000 4.94 0.0 36.47 4.75 F
326 343 0.038526 TTGAAGCTCCGACCGTTCTC 60.039 55.000 0.00 0.0 0.00 2.87 F
890 957 0.106469 CCCGTCCTCTGATCCTCTGA 60.106 60.000 0.00 0.0 0.00 3.27 F
1689 4312 0.179009 TGCTCTGCTCTGGCTTTGTT 60.179 50.000 0.00 0.0 39.59 2.83 F
2136 4759 1.003233 GCCTCCTCAGTCACCAACC 60.003 63.158 0.00 0.0 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 4436 2.121645 CGAAGGCCGGGTAGTACAT 58.878 57.895 2.18 0.0 33.91 2.29 R
1931 4554 2.579657 ATCACCGCCTCGTTGTCCA 61.580 57.895 0.00 0.0 0.00 4.02 R
2463 5098 0.251209 TGTACTCCTCGGTGTGCTCT 60.251 55.000 7.55 0.0 0.00 4.09 R
2556 5191 1.302993 GAGCTTGCCCCGGTAAACA 60.303 57.895 0.00 0.0 0.00 2.83 R
3797 7235 0.541764 GCATGTTCCAAACCAGGGGA 60.542 55.000 0.00 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.956297 AACATTGTTCCGTCCGTTCA 58.044 45.000 0.00 0.00 0.00 3.18
20 21 1.223187 ACATTGTTCCGTCCGTTCAC 58.777 50.000 0.00 0.00 0.00 3.18
21 22 1.222300 CATTGTTCCGTCCGTTCACA 58.778 50.000 0.00 0.00 0.00 3.58
22 23 1.600013 CATTGTTCCGTCCGTTCACAA 59.400 47.619 0.00 0.00 0.00 3.33
23 24 1.956297 TTGTTCCGTCCGTTCACAAT 58.044 45.000 0.00 0.00 0.00 2.71
24 25 1.956297 TGTTCCGTCCGTTCACAATT 58.044 45.000 0.00 0.00 0.00 2.32
25 26 1.600013 TGTTCCGTCCGTTCACAATTG 59.400 47.619 3.24 3.24 0.00 2.32
26 27 0.589223 TTCCGTCCGTTCACAATTGC 59.411 50.000 5.05 0.00 0.00 3.56
27 28 0.533085 TCCGTCCGTTCACAATTGCA 60.533 50.000 5.05 0.00 0.00 4.08
28 29 0.309302 CCGTCCGTTCACAATTGCAA 59.691 50.000 5.05 0.00 0.00 4.08
29 30 1.662876 CCGTCCGTTCACAATTGCAAG 60.663 52.381 4.94 0.00 0.00 4.01
30 31 1.662876 CGTCCGTTCACAATTGCAAGG 60.663 52.381 4.94 1.96 0.00 3.61
31 32 0.313672 TCCGTTCACAATTGCAAGGC 59.686 50.000 4.94 0.00 0.00 4.35
32 33 0.031857 CCGTTCACAATTGCAAGGCA 59.968 50.000 4.94 0.00 36.47 4.75
33 34 1.130955 CGTTCACAATTGCAAGGCAC 58.869 50.000 4.94 0.00 38.71 5.01
34 35 1.130955 GTTCACAATTGCAAGGCACG 58.869 50.000 4.94 0.00 38.71 5.34
35 36 0.743688 TTCACAATTGCAAGGCACGT 59.256 45.000 4.94 0.00 38.71 4.49
36 37 0.743688 TCACAATTGCAAGGCACGTT 59.256 45.000 4.94 0.00 38.71 3.99
37 38 1.135915 TCACAATTGCAAGGCACGTTT 59.864 42.857 4.94 0.00 38.71 3.60
38 39 1.258458 CACAATTGCAAGGCACGTTTG 59.742 47.619 4.94 5.21 38.71 2.93
39 40 1.134848 ACAATTGCAAGGCACGTTTGT 60.135 42.857 4.94 5.89 38.71 2.83
55 56 6.594886 CACGTTTGTGTGTGCTATAAATACA 58.405 36.000 0.00 0.00 41.34 2.29
56 57 6.736405 CACGTTTGTGTGTGCTATAAATACAG 59.264 38.462 0.00 0.00 41.34 2.74
57 58 6.128391 ACGTTTGTGTGTGCTATAAATACAGG 60.128 38.462 0.00 0.00 0.00 4.00
58 59 6.551736 GTTTGTGTGTGCTATAAATACAGGG 58.448 40.000 0.00 0.00 0.00 4.45
59 60 5.429681 TGTGTGTGCTATAAATACAGGGT 57.570 39.130 0.00 0.00 0.00 4.34
60 61 6.547930 TGTGTGTGCTATAAATACAGGGTA 57.452 37.500 0.00 0.00 0.00 3.69
61 62 6.342906 TGTGTGTGCTATAAATACAGGGTAC 58.657 40.000 0.00 0.00 0.00 3.34
62 63 6.155565 TGTGTGTGCTATAAATACAGGGTACT 59.844 38.462 0.00 0.00 0.00 2.73
72 73 1.515954 CAGGGTACTGCGGTACTGG 59.484 63.158 29.91 17.98 45.41 4.00
73 74 2.186125 GGGTACTGCGGTACTGGC 59.814 66.667 29.91 16.58 45.41 4.85
74 75 2.652095 GGGTACTGCGGTACTGGCA 61.652 63.158 29.91 7.83 45.41 4.92
89 90 4.584327 ACTGGCAGTACATTTTTGTTCC 57.416 40.909 20.61 0.00 0.00 3.62
90 91 3.957497 ACTGGCAGTACATTTTTGTTCCA 59.043 39.130 20.61 0.00 0.00 3.53
91 92 4.202111 ACTGGCAGTACATTTTTGTTCCAC 60.202 41.667 20.61 0.00 0.00 4.02
92 93 3.243234 TGGCAGTACATTTTTGTTCCACG 60.243 43.478 0.00 0.00 0.00 4.94
93 94 3.243267 GGCAGTACATTTTTGTTCCACGT 60.243 43.478 0.00 0.00 0.00 4.49
94 95 3.728718 GCAGTACATTTTTGTTCCACGTG 59.271 43.478 9.08 9.08 0.00 4.49
95 96 3.728718 CAGTACATTTTTGTTCCACGTGC 59.271 43.478 10.91 0.00 0.00 5.34
96 97 2.949451 ACATTTTTGTTCCACGTGCA 57.051 40.000 10.91 0.00 0.00 4.57
97 98 3.451141 ACATTTTTGTTCCACGTGCAT 57.549 38.095 10.91 0.00 0.00 3.96
98 99 3.122297 ACATTTTTGTTCCACGTGCATG 58.878 40.909 10.91 3.82 0.00 4.06
99 100 2.949451 TTTTTGTTCCACGTGCATGT 57.051 40.000 10.91 5.51 0.00 3.21
100 101 4.202060 ACATTTTTGTTCCACGTGCATGTA 60.202 37.500 12.10 0.00 0.00 2.29
101 102 3.341857 TTTTGTTCCACGTGCATGTAC 57.658 42.857 12.10 7.38 0.00 2.90
133 135 3.303395 CCAGAGACACGCTTTCACTTTTC 60.303 47.826 0.00 0.00 0.00 2.29
134 136 3.309682 CAGAGACACGCTTTCACTTTTCA 59.690 43.478 0.00 0.00 0.00 2.69
136 138 2.354821 AGACACGCTTTCACTTTTCACC 59.645 45.455 0.00 0.00 0.00 4.02
138 140 0.661020 ACGCTTTCACTTTTCACCCG 59.339 50.000 0.00 0.00 0.00 5.28
139 141 0.040425 CGCTTTCACTTTTCACCCGG 60.040 55.000 0.00 0.00 0.00 5.73
140 142 1.314730 GCTTTCACTTTTCACCCGGA 58.685 50.000 0.73 0.00 0.00 5.14
141 143 1.001706 GCTTTCACTTTTCACCCGGAC 60.002 52.381 0.73 0.00 0.00 4.79
166 170 1.119574 ACAGTCCCTACAACACGCCT 61.120 55.000 0.00 0.00 0.00 5.52
174 178 3.566742 CCCTACAACACGCCTTTAAAGTT 59.433 43.478 14.03 0.00 0.00 2.66
183 187 2.546789 CGCCTTTAAAGTTGACCGTTCT 59.453 45.455 14.03 0.00 0.00 3.01
186 190 4.275196 GCCTTTAAAGTTGACCGTTCTCTT 59.725 41.667 14.03 0.00 0.00 2.85
187 191 5.560375 GCCTTTAAAGTTGACCGTTCTCTTC 60.560 44.000 14.03 0.00 0.00 2.87
193 197 0.879765 TGACCGTTCTCTTCCGAGTC 59.120 55.000 0.00 0.00 38.45 3.36
201 205 3.766676 TCTCTTCCGAGTCTTGAATCG 57.233 47.619 12.61 12.61 38.45 3.34
228 232 1.067071 GGGTACGAGGAAGTGAGGTTG 60.067 57.143 0.00 0.00 0.00 3.77
229 233 1.672145 GGTACGAGGAAGTGAGGTTGC 60.672 57.143 0.00 0.00 0.00 4.17
230 234 1.272769 GTACGAGGAAGTGAGGTTGCT 59.727 52.381 0.00 0.00 0.00 3.91
233 242 1.066573 CGAGGAAGTGAGGTTGCTGAT 60.067 52.381 0.00 0.00 0.00 2.90
237 246 4.036518 AGGAAGTGAGGTTGCTGATAGAT 58.963 43.478 0.00 0.00 0.00 1.98
242 251 6.798427 AGTGAGGTTGCTGATAGATAGAAA 57.202 37.500 0.00 0.00 0.00 2.52
243 252 6.815089 AGTGAGGTTGCTGATAGATAGAAAG 58.185 40.000 0.00 0.00 0.00 2.62
244 253 6.609212 AGTGAGGTTGCTGATAGATAGAAAGA 59.391 38.462 0.00 0.00 0.00 2.52
245 254 7.124901 AGTGAGGTTGCTGATAGATAGAAAGAA 59.875 37.037 0.00 0.00 0.00 2.52
255 264 7.421599 TGATAGATAGAAAGAAGAGCAAGTCG 58.578 38.462 0.00 0.00 0.00 4.18
293 302 2.127232 GTGCCGTCAAAAGCTCGC 60.127 61.111 0.00 0.00 0.00 5.03
295 304 3.353836 GCCGTCAAAAGCTCGCCA 61.354 61.111 0.00 0.00 0.00 5.69
309 318 4.099170 GCCAGCAGCGCTCACTTG 62.099 66.667 7.13 5.21 36.40 3.16
310 319 2.357881 CCAGCAGCGCTCACTTGA 60.358 61.111 7.13 0.00 36.40 3.02
312 321 1.496393 CAGCAGCGCTCACTTGAAG 59.504 57.895 7.13 0.00 36.40 3.02
315 324 1.786582 CAGCGCTCACTTGAAGCTC 59.213 57.895 7.13 0.00 36.44 4.09
316 325 1.375268 AGCGCTCACTTGAAGCTCC 60.375 57.895 2.64 0.00 34.48 4.70
318 327 1.080501 CGCTCACTTGAAGCTCCGA 60.081 57.895 0.00 0.00 0.00 4.55
319 328 1.347817 CGCTCACTTGAAGCTCCGAC 61.348 60.000 0.00 0.00 0.00 4.79
320 329 1.016653 GCTCACTTGAAGCTCCGACC 61.017 60.000 0.00 0.00 0.00 4.79
321 330 0.734253 CTCACTTGAAGCTCCGACCG 60.734 60.000 0.00 0.00 0.00 4.79
322 331 1.006102 CACTTGAAGCTCCGACCGT 60.006 57.895 0.00 0.00 0.00 4.83
323 332 0.600255 CACTTGAAGCTCCGACCGTT 60.600 55.000 0.00 0.00 0.00 4.44
326 343 0.038526 TTGAAGCTCCGACCGTTCTC 60.039 55.000 0.00 0.00 0.00 2.87
335 352 1.076533 CGACCGTTCTCAACATCGGG 61.077 60.000 7.34 0.00 46.06 5.14
342 359 3.712187 GTTCTCAACATCGGGAGAGATC 58.288 50.000 0.00 0.00 45.48 2.75
343 360 3.018423 TCTCAACATCGGGAGAGATCA 57.982 47.619 0.00 0.00 45.48 2.92
344 361 2.954989 TCTCAACATCGGGAGAGATCAG 59.045 50.000 0.00 0.00 45.48 2.90
345 362 2.954989 CTCAACATCGGGAGAGATCAGA 59.045 50.000 0.00 0.00 45.48 3.27
346 363 2.954989 TCAACATCGGGAGAGATCAGAG 59.045 50.000 0.00 0.00 45.48 3.35
347 364 2.954989 CAACATCGGGAGAGATCAGAGA 59.045 50.000 0.00 0.00 45.48 3.10
349 366 3.156293 ACATCGGGAGAGATCAGAGATG 58.844 50.000 0.00 4.09 45.48 2.90
350 367 3.156293 CATCGGGAGAGATCAGAGATGT 58.844 50.000 0.00 0.00 45.48 3.06
351 368 3.304911 TCGGGAGAGATCAGAGATGTT 57.695 47.619 0.00 0.00 0.00 2.71
352 369 2.954989 TCGGGAGAGATCAGAGATGTTG 59.045 50.000 0.00 0.00 0.00 3.33
353 370 2.954989 CGGGAGAGATCAGAGATGTTGA 59.045 50.000 0.00 0.00 0.00 3.18
355 372 4.039004 CGGGAGAGATCAGAGATGTTGATT 59.961 45.833 0.00 0.00 35.50 2.57
356 373 5.453057 CGGGAGAGATCAGAGATGTTGATTT 60.453 44.000 0.00 0.00 35.50 2.17
357 374 5.759273 GGGAGAGATCAGAGATGTTGATTTG 59.241 44.000 0.00 0.00 35.50 2.32
358 375 6.347696 GGAGAGATCAGAGATGTTGATTTGT 58.652 40.000 0.00 0.00 35.50 2.83
359 376 7.418368 GGGAGAGATCAGAGATGTTGATTTGTA 60.418 40.741 0.00 0.00 35.50 2.41
360 377 7.437862 GGAGAGATCAGAGATGTTGATTTGTAC 59.562 40.741 0.00 0.00 35.50 2.90
362 379 8.196771 AGAGATCAGAGATGTTGATTTGTACTC 58.803 37.037 0.00 0.00 35.50 2.59
363 380 7.845037 AGATCAGAGATGTTGATTTGTACTCA 58.155 34.615 0.00 0.00 35.50 3.41
364 381 7.763528 AGATCAGAGATGTTGATTTGTACTCAC 59.236 37.037 0.00 0.00 35.50 3.51
376 393 4.891627 TTGTACTCACACCATTGTTGTG 57.108 40.909 7.94 7.94 39.63 3.33
380 397 5.525745 TGTACTCACACCATTGTTGTGTTAG 59.474 40.000 13.21 7.63 44.19 2.34
386 403 5.175491 CACACCATTGTTGTGTTAGCATTTC 59.825 40.000 6.20 0.00 44.19 2.17
404 421 4.829064 TTTCGCTTAAGAAATGTGCTGT 57.171 36.364 6.67 0.00 35.44 4.40
406 423 4.829064 TCGCTTAAGAAATGTGCTGTTT 57.171 36.364 6.67 0.00 0.00 2.83
407 424 5.933187 TCGCTTAAGAAATGTGCTGTTTA 57.067 34.783 6.67 0.00 0.00 2.01
408 425 5.927030 TCGCTTAAGAAATGTGCTGTTTAG 58.073 37.500 6.67 0.00 0.00 1.85
409 426 5.468746 TCGCTTAAGAAATGTGCTGTTTAGT 59.531 36.000 6.67 0.00 0.00 2.24
410 427 5.565259 CGCTTAAGAAATGTGCTGTTTAGTG 59.435 40.000 6.67 0.00 0.00 2.74
411 428 5.343325 GCTTAAGAAATGTGCTGTTTAGTGC 59.657 40.000 6.67 0.00 0.00 4.40
412 429 6.633500 TTAAGAAATGTGCTGTTTAGTGCT 57.367 33.333 0.00 0.00 0.00 4.40
413 430 4.494350 AGAAATGTGCTGTTTAGTGCTG 57.506 40.909 0.00 0.00 0.00 4.41
414 431 3.254166 AGAAATGTGCTGTTTAGTGCTGG 59.746 43.478 0.00 0.00 0.00 4.85
415 432 0.883833 ATGTGCTGTTTAGTGCTGGC 59.116 50.000 0.00 0.00 0.00 4.85
429 446 3.654021 TGGCACAGAACCACTCCA 58.346 55.556 0.00 0.00 30.29 3.86
431 448 1.344953 TGGCACAGAACCACTCCACT 61.345 55.000 0.00 0.00 30.29 4.00
432 449 0.886490 GGCACAGAACCACTCCACTG 60.886 60.000 0.00 0.00 36.58 3.66
433 450 0.179045 GCACAGAACCACTCCACTGT 60.179 55.000 0.00 0.00 43.05 3.55
434 451 1.070134 GCACAGAACCACTCCACTGTA 59.930 52.381 0.00 0.00 40.84 2.74
435 452 2.484770 GCACAGAACCACTCCACTGTAA 60.485 50.000 0.00 0.00 40.84 2.41
440 457 5.542635 ACAGAACCACTCCACTGTAAATCTA 59.457 40.000 0.00 0.00 40.96 1.98
443 460 8.258007 CAGAACCACTCCACTGTAAATCTATAA 58.742 37.037 0.00 0.00 0.00 0.98
444 461 8.993424 AGAACCACTCCACTGTAAATCTATAAT 58.007 33.333 0.00 0.00 0.00 1.28
446 463 7.736893 ACCACTCCACTGTAAATCTATAATCC 58.263 38.462 0.00 0.00 0.00 3.01
447 464 7.162082 CCACTCCACTGTAAATCTATAATCCC 58.838 42.308 0.00 0.00 0.00 3.85
448 465 6.868864 CACTCCACTGTAAATCTATAATCCCG 59.131 42.308 0.00 0.00 0.00 5.14
450 467 6.755206 TCCACTGTAAATCTATAATCCCGTG 58.245 40.000 0.00 0.00 0.00 4.94
452 469 6.990349 CCACTGTAAATCTATAATCCCGTGTT 59.010 38.462 0.00 0.00 0.00 3.32
453 470 7.042051 CCACTGTAAATCTATAATCCCGTGTTG 60.042 40.741 0.00 0.00 0.00 3.33
454 471 6.990349 ACTGTAAATCTATAATCCCGTGTTGG 59.010 38.462 0.00 0.00 37.55 3.77
455 472 6.891388 TGTAAATCTATAATCCCGTGTTGGT 58.109 36.000 0.00 0.00 35.15 3.67
487 504 2.189521 CTCTTGGGCGCCGGTAAT 59.810 61.111 22.54 0.00 0.00 1.89
509 526 2.092968 TGGAAACGGAATCCCATCTGAG 60.093 50.000 0.00 0.00 36.04 3.35
511 528 2.990066 AACGGAATCCCATCTGAGAC 57.010 50.000 0.00 0.00 0.00 3.36
514 531 0.755686 GGAATCCCATCTGAGACGCT 59.244 55.000 0.00 0.00 0.00 5.07
751 810 5.380043 AGCAGAAAGAAGAAAGACATCCAA 58.620 37.500 0.00 0.00 0.00 3.53
777 836 4.668118 GAAACCCCGACGCGGTCA 62.668 66.667 12.47 0.00 46.80 4.02
790 857 3.703127 GGTCACCCCCGTCCACTC 61.703 72.222 0.00 0.00 0.00 3.51
791 858 3.703127 GTCACCCCCGTCCACTCC 61.703 72.222 0.00 0.00 0.00 3.85
792 859 3.923645 TCACCCCCGTCCACTCCT 61.924 66.667 0.00 0.00 0.00 3.69
793 860 3.391382 CACCCCCGTCCACTCCTC 61.391 72.222 0.00 0.00 0.00 3.71
794 861 4.716977 ACCCCCGTCCACTCCTCC 62.717 72.222 0.00 0.00 0.00 4.30
797 864 4.715130 CCCGTCCACTCCTCCCCA 62.715 72.222 0.00 0.00 0.00 4.96
798 865 2.606519 CCGTCCACTCCTCCCCAA 60.607 66.667 0.00 0.00 0.00 4.12
799 866 2.663196 CGTCCACTCCTCCCCAAC 59.337 66.667 0.00 0.00 0.00 3.77
800 867 2.955881 CGTCCACTCCTCCCCAACC 61.956 68.421 0.00 0.00 0.00 3.77
801 868 2.204090 TCCACTCCTCCCCAACCC 60.204 66.667 0.00 0.00 0.00 4.11
802 869 3.339093 CCACTCCTCCCCAACCCC 61.339 72.222 0.00 0.00 0.00 4.95
803 870 3.717294 CACTCCTCCCCAACCCCG 61.717 72.222 0.00 0.00 0.00 5.73
840 907 2.235891 CTTTTACCTTTTCCACGGGCT 58.764 47.619 0.00 0.00 0.00 5.19
890 957 0.106469 CCCGTCCTCTGATCCTCTGA 60.106 60.000 0.00 0.00 0.00 3.27
902 969 0.467106 TCCTCTGATCCTCTGCTCCG 60.467 60.000 0.00 0.00 0.00 4.63
903 970 1.363443 CTCTGATCCTCTGCTCCGC 59.637 63.158 0.00 0.00 0.00 5.54
904 971 1.076412 TCTGATCCTCTGCTCCGCT 60.076 57.895 0.00 0.00 0.00 5.52
905 972 1.106351 TCTGATCCTCTGCTCCGCTC 61.106 60.000 0.00 0.00 0.00 5.03
907 974 1.832167 GATCCTCTGCTCCGCTCCT 60.832 63.158 0.00 0.00 0.00 3.69
908 975 0.538516 GATCCTCTGCTCCGCTCCTA 60.539 60.000 0.00 0.00 0.00 2.94
909 976 0.825840 ATCCTCTGCTCCGCTCCTAC 60.826 60.000 0.00 0.00 0.00 3.18
910 977 1.454847 CCTCTGCTCCGCTCCTACT 60.455 63.158 0.00 0.00 0.00 2.57
1689 4312 0.179009 TGCTCTGCTCTGGCTTTGTT 60.179 50.000 0.00 0.00 39.59 2.83
1860 4483 3.745803 GAGTTCCTCGTCGCCGGT 61.746 66.667 1.90 0.00 33.95 5.28
2136 4759 1.003233 GCCTCCTCAGTCACCAACC 60.003 63.158 0.00 0.00 0.00 3.77
2217 4840 1.153409 CTTCGCTGGCATCTGCTCT 60.153 57.895 1.70 0.00 41.70 4.09
2327 4950 3.259751 GGCGGATAACGTCGGTGC 61.260 66.667 0.00 0.00 46.52 5.01
2463 5098 2.206750 CCGTCGTCCTTCAACTTCAAA 58.793 47.619 0.00 0.00 0.00 2.69
2559 5194 1.600916 GGGAAGCTTCGGCACTGTT 60.601 57.895 19.91 0.00 44.74 3.16
3408 6844 1.216977 CGACATCGTGGCCAACCTA 59.783 57.895 7.24 0.00 36.63 3.08
3541 6977 2.187946 CCATGGAGCTGTCGGGAC 59.812 66.667 5.56 0.00 0.00 4.46
3675 7113 9.709495 TTAGTTCATTGATTTTTGATTTGAGGG 57.291 29.630 0.00 0.00 0.00 4.30
3722 7160 1.797046 CTCTGTGTGTGTGATCTGTGC 59.203 52.381 0.00 0.00 0.00 4.57
3735 7173 4.443725 GTGATCTGTGCTGTGATTATCTCG 59.556 45.833 0.00 0.00 0.00 4.04
3739 7177 2.166254 TGTGCTGTGATTATCTCGCTCA 59.834 45.455 10.44 10.04 35.31 4.26
3796 7234 7.421599 TGATCGTATTGAACTGATCTCTTCTC 58.578 38.462 0.00 0.00 38.18 2.87
3797 7235 7.284261 TGATCGTATTGAACTGATCTCTTCTCT 59.716 37.037 0.00 0.00 38.18 3.10
3798 7236 7.022055 TCGTATTGAACTGATCTCTTCTCTC 57.978 40.000 0.00 0.00 0.00 3.20
3799 7237 6.038825 TCGTATTGAACTGATCTCTTCTCTCC 59.961 42.308 0.00 0.00 0.00 3.71
3800 7238 5.612725 ATTGAACTGATCTCTTCTCTCCC 57.387 43.478 0.00 0.00 0.00 4.30
3801 7239 3.370104 TGAACTGATCTCTTCTCTCCCC 58.630 50.000 0.00 0.00 0.00 4.81
3802 7240 3.012274 TGAACTGATCTCTTCTCTCCCCT 59.988 47.826 0.00 0.00 0.00 4.79
3803 7241 3.030873 ACTGATCTCTTCTCTCCCCTG 57.969 52.381 0.00 0.00 0.00 4.45
3804 7242 2.318908 CTGATCTCTTCTCTCCCCTGG 58.681 57.143 0.00 0.00 0.00 4.45
3805 7243 1.648568 TGATCTCTTCTCTCCCCTGGT 59.351 52.381 0.00 0.00 0.00 4.00
3806 7244 2.045047 TGATCTCTTCTCTCCCCTGGTT 59.955 50.000 0.00 0.00 0.00 3.67
3807 7245 2.723530 TCTCTTCTCTCCCCTGGTTT 57.276 50.000 0.00 0.00 0.00 3.27
3808 7246 2.260822 TCTCTTCTCTCCCCTGGTTTG 58.739 52.381 0.00 0.00 0.00 2.93
3809 7247 1.280421 CTCTTCTCTCCCCTGGTTTGG 59.720 57.143 0.00 0.00 0.00 3.28
3810 7248 1.132527 TCTTCTCTCCCCTGGTTTGGA 60.133 52.381 0.00 0.00 0.00 3.53
3811 7249 1.705186 CTTCTCTCCCCTGGTTTGGAA 59.295 52.381 0.00 0.00 0.00 3.53
3812 7250 1.064825 TCTCTCCCCTGGTTTGGAAC 58.935 55.000 0.00 0.00 0.00 3.62
3813 7251 0.771127 CTCTCCCCTGGTTTGGAACA 59.229 55.000 0.00 0.00 0.00 3.18
3814 7252 1.355720 CTCTCCCCTGGTTTGGAACAT 59.644 52.381 0.00 0.00 39.30 2.71
3815 7253 1.075374 TCTCCCCTGGTTTGGAACATG 59.925 52.381 0.00 0.00 39.30 3.21
3816 7254 0.541764 TCCCCTGGTTTGGAACATGC 60.542 55.000 0.00 0.00 39.30 4.06
3817 7255 0.831288 CCCCTGGTTTGGAACATGCA 60.831 55.000 0.00 0.00 39.30 3.96
3818 7256 1.269012 CCCTGGTTTGGAACATGCAT 58.731 50.000 0.00 0.00 39.30 3.96
3819 7257 1.066716 CCCTGGTTTGGAACATGCATG 60.067 52.381 25.09 25.09 39.30 4.06
3820 7258 1.894466 CCTGGTTTGGAACATGCATGA 59.106 47.619 32.75 7.78 39.30 3.07
3821 7259 2.094390 CCTGGTTTGGAACATGCATGAG 60.094 50.000 32.75 15.41 39.30 2.90
3822 7260 2.821378 CTGGTTTGGAACATGCATGAGA 59.179 45.455 32.75 10.30 39.30 3.27
3823 7261 3.229293 TGGTTTGGAACATGCATGAGAA 58.771 40.909 32.75 15.34 39.30 2.87
3824 7262 3.640498 TGGTTTGGAACATGCATGAGAAA 59.360 39.130 32.75 19.62 39.30 2.52
3825 7263 4.100653 TGGTTTGGAACATGCATGAGAAAA 59.899 37.500 32.75 21.20 39.30 2.29
3826 7264 5.055812 GGTTTGGAACATGCATGAGAAAAA 58.944 37.500 32.75 21.52 39.30 1.94
3827 7265 5.702209 GGTTTGGAACATGCATGAGAAAAAT 59.298 36.000 32.75 5.74 39.30 1.82
3828 7266 6.205270 GGTTTGGAACATGCATGAGAAAAATT 59.795 34.615 32.75 14.56 39.30 1.82
3829 7267 7.255208 GGTTTGGAACATGCATGAGAAAAATTT 60.255 33.333 32.75 13.81 39.30 1.82
3830 7268 7.424227 TTGGAACATGCATGAGAAAAATTTC 57.576 32.000 32.75 20.75 39.30 2.17
3831 7269 5.933463 TGGAACATGCATGAGAAAAATTTCC 59.067 36.000 32.75 27.54 37.92 3.13
3832 7270 5.933463 GGAACATGCATGAGAAAAATTTCCA 59.067 36.000 32.75 1.83 37.92 3.53
3833 7271 6.091713 GGAACATGCATGAGAAAAATTTCCAG 59.908 38.462 32.75 0.59 37.92 3.86
3834 7272 5.484715 ACATGCATGAGAAAAATTTCCAGG 58.515 37.500 32.75 0.18 37.92 4.45
3843 7281 6.161855 AGAAAAATTTCCAGGTTCTCAACC 57.838 37.500 2.37 0.00 43.80 3.77
3866 7314 3.014623 TCATCTGCTTTTGAGGCATCAG 58.985 45.455 0.00 0.00 39.07 2.90
3872 7320 2.517959 CTTTTGAGGCATCAGTCCCAA 58.482 47.619 0.00 0.00 36.61 4.12
3875 7323 0.036732 TGAGGCATCAGTCCCAACAC 59.963 55.000 0.00 0.00 0.00 3.32
3882 7330 3.002656 GCATCAGTCCCAACACGATAATG 59.997 47.826 0.00 0.00 0.00 1.90
3884 7332 3.595173 TCAGTCCCAACACGATAATGTG 58.405 45.455 0.00 0.00 45.41 3.21
3885 7333 3.259625 TCAGTCCCAACACGATAATGTGA 59.740 43.478 0.24 0.00 42.55 3.58
3886 7334 4.000325 CAGTCCCAACACGATAATGTGAA 59.000 43.478 0.24 0.00 42.55 3.18
3888 7336 3.749088 GTCCCAACACGATAATGTGAACA 59.251 43.478 0.24 0.00 42.55 3.18
3890 7338 3.426159 CCCAACACGATAATGTGAACAGC 60.426 47.826 0.24 0.00 42.55 4.40
3942 7401 1.825090 TCCAGCAGAATCATTGCGTT 58.175 45.000 0.00 0.00 45.98 4.84
3964 7425 1.598701 AAGCAGCTTTCGGGCATTCC 61.599 55.000 0.21 0.00 34.17 3.01
4075 7539 1.014564 CGCTTTTGGTCTCCGGTCTC 61.015 60.000 0.00 0.00 0.00 3.36
4076 7540 0.034896 GCTTTTGGTCTCCGGTCTCA 59.965 55.000 0.00 0.00 0.00 3.27
4077 7541 1.941668 GCTTTTGGTCTCCGGTCTCAG 60.942 57.143 0.00 0.00 0.00 3.35
4078 7542 0.685097 TTTTGGTCTCCGGTCTCAGG 59.315 55.000 0.00 0.00 0.00 3.86
4079 7543 0.178944 TTTGGTCTCCGGTCTCAGGA 60.179 55.000 0.00 0.00 36.20 3.86
4120 7588 4.196193 TCTTTATTCCAACCCATACGCAG 58.804 43.478 0.00 0.00 0.00 5.18
4198 7676 3.182590 TTCCTGCCAGCGAGCAAGT 62.183 57.895 5.21 0.00 43.52 3.16
4228 7708 0.314935 TTTGGGTCTACCGTGACGAC 59.685 55.000 6.54 0.00 44.64 4.34
4229 7709 0.538057 TTGGGTCTACCGTGACGACT 60.538 55.000 6.54 0.00 44.64 4.18
4263 7743 0.882927 CGTTTTCTCCGGGCACTTCA 60.883 55.000 0.00 0.00 0.00 3.02
4277 7758 1.336440 CACTTCACGTCATTTTGGCCA 59.664 47.619 0.00 0.00 0.00 5.36
4278 7759 2.028130 ACTTCACGTCATTTTGGCCAA 58.972 42.857 16.05 16.05 0.00 4.52
4292 7773 2.092882 GCCAACGGTAGTCTCGTGC 61.093 63.158 0.00 0.00 40.96 5.34
4293 7774 1.585006 CCAACGGTAGTCTCGTGCT 59.415 57.895 0.00 0.00 40.96 4.40
4294 7775 0.456312 CCAACGGTAGTCTCGTGCTC 60.456 60.000 0.00 0.00 40.96 4.26
4295 7776 0.522180 CAACGGTAGTCTCGTGCTCT 59.478 55.000 0.00 0.00 40.96 4.09
4296 7777 1.068472 CAACGGTAGTCTCGTGCTCTT 60.068 52.381 0.00 0.00 40.96 2.85
4297 7778 1.245732 ACGGTAGTCTCGTGCTCTTT 58.754 50.000 0.00 0.00 39.55 2.52
4298 7779 1.199558 ACGGTAGTCTCGTGCTCTTTC 59.800 52.381 0.00 0.00 39.55 2.62
4299 7780 1.467713 CGGTAGTCTCGTGCTCTTTCC 60.468 57.143 0.00 0.00 0.00 3.13
4300 7781 1.819903 GGTAGTCTCGTGCTCTTTCCT 59.180 52.381 0.00 0.00 0.00 3.36
4301 7782 2.231721 GGTAGTCTCGTGCTCTTTCCTT 59.768 50.000 0.00 0.00 0.00 3.36
4302 7783 2.734276 AGTCTCGTGCTCTTTCCTTC 57.266 50.000 0.00 0.00 0.00 3.46
4303 7784 1.273886 AGTCTCGTGCTCTTTCCTTCC 59.726 52.381 0.00 0.00 0.00 3.46
4304 7785 1.273886 GTCTCGTGCTCTTTCCTTCCT 59.726 52.381 0.00 0.00 0.00 3.36
4305 7786 1.971357 TCTCGTGCTCTTTCCTTCCTT 59.029 47.619 0.00 0.00 0.00 3.36
4306 7787 2.028930 TCTCGTGCTCTTTCCTTCCTTC 60.029 50.000 0.00 0.00 0.00 3.46
4307 7788 1.691976 TCGTGCTCTTTCCTTCCTTCA 59.308 47.619 0.00 0.00 0.00 3.02
4323 7804 1.872952 CTTCATGGTGTGCAGTTTCGA 59.127 47.619 0.00 0.00 0.00 3.71
4330 7811 1.333619 GTGTGCAGTTTCGACAACCAT 59.666 47.619 0.00 0.00 0.00 3.55
4331 7812 1.601903 TGTGCAGTTTCGACAACCATC 59.398 47.619 0.00 0.06 0.00 3.51
4363 7844 1.541310 TTGGTCAGGACGAAGCGGAT 61.541 55.000 0.00 0.00 0.00 4.18
4393 7874 4.693283 TCAATTTCAACGCCGATCTCTAT 58.307 39.130 0.00 0.00 0.00 1.98
4444 7931 3.145286 TCACCATCGCAAAAATGACAGA 58.855 40.909 0.00 0.00 0.00 3.41
4459 7946 7.595819 AAATGACAGATTTTTAGTTCCCACA 57.404 32.000 0.00 0.00 0.00 4.17
4468 7955 0.472352 TAGTTCCCACACGAAGGGGT 60.472 55.000 10.77 1.28 46.77 4.95
4501 7988 1.153647 GGCTGCGGTTTTAATGGCC 60.154 57.895 0.00 0.00 0.00 5.36
4519 8006 0.040425 CCGTCCGGCAAACTCAAAAG 60.040 55.000 0.00 0.00 0.00 2.27
4520 8007 0.661020 CGTCCGGCAAACTCAAAAGT 59.339 50.000 0.00 0.00 37.32 2.66
4521 8008 1.868498 CGTCCGGCAAACTCAAAAGTA 59.132 47.619 0.00 0.00 33.48 2.24
4522 8009 2.349155 CGTCCGGCAAACTCAAAAGTAC 60.349 50.000 0.00 0.00 33.48 2.73
4523 8010 2.614983 GTCCGGCAAACTCAAAAGTACA 59.385 45.455 0.00 0.00 33.48 2.90
4524 8011 2.614983 TCCGGCAAACTCAAAAGTACAC 59.385 45.455 0.00 0.00 33.48 2.90
4525 8012 2.616842 CCGGCAAACTCAAAAGTACACT 59.383 45.455 0.00 0.00 33.48 3.55
4526 8013 3.548014 CCGGCAAACTCAAAAGTACACTG 60.548 47.826 0.00 0.00 33.48 3.66
4527 8014 3.064820 CGGCAAACTCAAAAGTACACTGT 59.935 43.478 0.00 0.00 33.48 3.55
4529 8016 4.497507 GGCAAACTCAAAAGTACACTGTCC 60.498 45.833 0.00 0.00 33.48 4.02
4530 8017 4.095782 GCAAACTCAAAAGTACACTGTCCA 59.904 41.667 0.00 0.00 33.48 4.02
4534 8021 6.190954 ACTCAAAAGTACACTGTCCAAAAC 57.809 37.500 0.00 0.00 32.59 2.43
4535 8022 5.708230 ACTCAAAAGTACACTGTCCAAAACA 59.292 36.000 0.00 0.00 32.59 2.83
4536 8023 6.128007 ACTCAAAAGTACACTGTCCAAAACAG 60.128 38.462 3.72 3.72 46.73 3.16
4537 8024 8.226414 ACTCAAAAGTACACTGTCCAAAACAGA 61.226 37.037 11.87 0.00 45.43 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.600485 GTGAACGGACGGAACAATGTT 59.400 47.619 0.00 0.00 0.00 2.71
1 2 1.223187 GTGAACGGACGGAACAATGT 58.777 50.000 0.00 0.00 0.00 2.71
2 3 1.222300 TGTGAACGGACGGAACAATG 58.778 50.000 0.00 0.00 0.00 2.82
3 4 1.956297 TTGTGAACGGACGGAACAAT 58.044 45.000 0.00 0.00 0.00 2.71
4 5 1.956297 ATTGTGAACGGACGGAACAA 58.044 45.000 10.10 10.10 35.41 2.83
5 6 1.600013 CAATTGTGAACGGACGGAACA 59.400 47.619 0.00 0.00 0.00 3.18
6 7 1.662026 GCAATTGTGAACGGACGGAAC 60.662 52.381 7.40 0.00 0.00 3.62
7 8 0.589223 GCAATTGTGAACGGACGGAA 59.411 50.000 7.40 0.00 0.00 4.30
8 9 0.533085 TGCAATTGTGAACGGACGGA 60.533 50.000 7.40 0.00 0.00 4.69
9 10 0.309302 TTGCAATTGTGAACGGACGG 59.691 50.000 7.40 0.00 0.00 4.79
10 11 1.662876 CCTTGCAATTGTGAACGGACG 60.663 52.381 7.40 0.00 0.00 4.79
11 12 1.930371 GCCTTGCAATTGTGAACGGAC 60.930 52.381 7.40 0.00 0.00 4.79
12 13 0.313672 GCCTTGCAATTGTGAACGGA 59.686 50.000 7.40 0.00 0.00 4.69
13 14 0.031857 TGCCTTGCAATTGTGAACGG 59.968 50.000 7.40 0.00 34.76 4.44
14 15 1.130955 GTGCCTTGCAATTGTGAACG 58.869 50.000 7.40 0.00 41.47 3.95
15 16 1.130955 CGTGCCTTGCAATTGTGAAC 58.869 50.000 7.40 0.00 41.47 3.18
16 17 0.743688 ACGTGCCTTGCAATTGTGAA 59.256 45.000 7.40 0.00 41.47 3.18
17 18 0.743688 AACGTGCCTTGCAATTGTGA 59.256 45.000 7.40 0.00 41.47 3.58
18 19 1.258458 CAAACGTGCCTTGCAATTGTG 59.742 47.619 7.40 0.00 41.47 3.33
19 20 1.134848 ACAAACGTGCCTTGCAATTGT 60.135 42.857 7.40 2.79 41.47 2.71
20 21 1.258458 CACAAACGTGCCTTGCAATTG 59.742 47.619 0.00 0.00 41.47 2.32
21 22 1.134848 ACACAAACGTGCCTTGCAATT 60.135 42.857 0.00 0.00 41.47 2.32
22 23 0.459489 ACACAAACGTGCCTTGCAAT 59.541 45.000 0.00 0.00 41.47 3.56
23 24 0.457509 CACACAAACGTGCCTTGCAA 60.458 50.000 0.00 0.00 41.47 4.08
24 25 1.138459 CACACAAACGTGCCTTGCA 59.862 52.632 0.00 0.00 37.97 4.08
25 26 1.138671 ACACACAAACGTGCCTTGC 59.861 52.632 0.00 0.00 40.73 4.01
26 27 2.942545 CACACACAAACGTGCCTTG 58.057 52.632 0.00 0.00 40.73 3.61
31 32 6.594886 TGTATTTATAGCACACACAAACGTG 58.405 36.000 0.00 0.00 42.81 4.49
32 33 6.128391 CCTGTATTTATAGCACACACAAACGT 60.128 38.462 0.00 0.00 0.00 3.99
33 34 6.247903 CCTGTATTTATAGCACACACAAACG 58.752 40.000 0.00 0.00 0.00 3.60
34 35 6.150474 ACCCTGTATTTATAGCACACACAAAC 59.850 38.462 0.00 0.00 0.00 2.93
35 36 6.242396 ACCCTGTATTTATAGCACACACAAA 58.758 36.000 0.00 0.00 0.00 2.83
36 37 5.811190 ACCCTGTATTTATAGCACACACAA 58.189 37.500 0.00 0.00 0.00 3.33
37 38 5.429681 ACCCTGTATTTATAGCACACACA 57.570 39.130 0.00 0.00 0.00 3.72
38 39 6.479001 CAGTACCCTGTATTTATAGCACACAC 59.521 42.308 0.00 0.00 33.80 3.82
39 40 6.578944 CAGTACCCTGTATTTATAGCACACA 58.421 40.000 0.00 0.00 33.80 3.72
40 41 5.465724 GCAGTACCCTGTATTTATAGCACAC 59.534 44.000 0.00 0.00 41.02 3.82
41 42 5.607477 GCAGTACCCTGTATTTATAGCACA 58.393 41.667 0.00 0.00 41.02 4.57
42 43 4.684703 CGCAGTACCCTGTATTTATAGCAC 59.315 45.833 0.00 0.00 41.02 4.40
43 44 4.262292 CCGCAGTACCCTGTATTTATAGCA 60.262 45.833 0.00 0.00 41.02 3.49
44 45 4.243270 CCGCAGTACCCTGTATTTATAGC 58.757 47.826 0.00 0.00 41.02 2.97
45 46 5.464030 ACCGCAGTACCCTGTATTTATAG 57.536 43.478 0.00 0.00 41.02 1.31
46 47 6.331369 GTACCGCAGTACCCTGTATTTATA 57.669 41.667 0.00 0.00 42.66 0.98
47 48 5.205759 GTACCGCAGTACCCTGTATTTAT 57.794 43.478 0.00 0.00 42.66 1.40
48 49 4.654091 GTACCGCAGTACCCTGTATTTA 57.346 45.455 0.00 0.00 42.66 1.40
49 50 3.531934 GTACCGCAGTACCCTGTATTT 57.468 47.619 0.00 0.00 42.66 1.40
58 59 4.496670 CTGCCAGTACCGCAGTAC 57.503 61.111 19.62 1.76 46.97 2.73
65 66 7.907594 TGGAACAAAAATGTACTGCCAGTACC 61.908 42.308 27.48 11.97 42.83 3.34
66 67 5.009210 TGGAACAAAAATGTACTGCCAGTAC 59.991 40.000 24.78 24.78 43.40 2.73
67 68 5.009210 GTGGAACAAAAATGTACTGCCAGTA 59.991 40.000 0.00 0.00 44.16 2.74
68 69 3.957497 TGGAACAAAAATGTACTGCCAGT 59.043 39.130 1.54 1.54 31.92 4.00
69 70 4.298332 GTGGAACAAAAATGTACTGCCAG 58.702 43.478 0.00 0.00 44.16 4.85
70 71 3.243234 CGTGGAACAAAAATGTACTGCCA 60.243 43.478 0.00 0.00 44.16 4.92
71 72 3.243267 ACGTGGAACAAAAATGTACTGCC 60.243 43.478 0.00 0.00 44.16 4.85
72 73 3.728718 CACGTGGAACAAAAATGTACTGC 59.271 43.478 7.95 0.00 44.16 4.40
73 74 3.728718 GCACGTGGAACAAAAATGTACTG 59.271 43.478 18.88 0.00 44.16 2.74
74 75 3.378742 TGCACGTGGAACAAAAATGTACT 59.621 39.130 18.88 0.00 44.16 2.73
75 76 3.696898 TGCACGTGGAACAAAAATGTAC 58.303 40.909 18.88 0.00 44.16 2.90
76 77 4.202060 ACATGCACGTGGAACAAAAATGTA 60.202 37.500 15.51 0.00 44.16 2.29
77 78 2.949451 TGCACGTGGAACAAAAATGT 57.051 40.000 18.88 0.00 44.16 2.71
78 79 3.122297 ACATGCACGTGGAACAAAAATG 58.878 40.909 15.51 8.49 44.16 2.32
79 80 3.451141 ACATGCACGTGGAACAAAAAT 57.549 38.095 15.51 0.00 44.16 1.82
80 81 2.949451 ACATGCACGTGGAACAAAAA 57.051 40.000 15.51 0.00 44.16 1.94
81 82 2.033550 GGTACATGCACGTGGAACAAAA 59.966 45.455 15.51 0.00 44.16 2.44
82 83 1.604755 GGTACATGCACGTGGAACAAA 59.395 47.619 15.51 0.00 44.16 2.83
83 84 1.231221 GGTACATGCACGTGGAACAA 58.769 50.000 15.51 0.00 44.16 2.83
84 85 0.946700 CGGTACATGCACGTGGAACA 60.947 55.000 15.51 5.18 35.74 3.18
85 86 0.947180 ACGGTACATGCACGTGGAAC 60.947 55.000 15.51 7.92 39.64 3.62
86 87 0.946700 CACGGTACATGCACGTGGAA 60.947 55.000 15.51 0.00 45.34 3.53
87 88 1.373622 CACGGTACATGCACGTGGA 60.374 57.895 18.88 16.39 45.34 4.02
88 89 1.623081 GACACGGTACATGCACGTGG 61.623 60.000 28.77 17.24 45.34 4.94
89 90 1.623081 GGACACGGTACATGCACGTG 61.623 60.000 25.87 25.87 45.34 4.49
90 91 1.373748 GGACACGGTACATGCACGT 60.374 57.895 4.37 4.37 42.17 4.49
91 92 2.441378 CGGACACGGTACATGCACG 61.441 63.158 0.00 0.00 36.18 5.34
92 93 3.470267 CGGACACGGTACATGCAC 58.530 61.111 0.00 0.00 36.18 4.57
113 114 3.309954 GTGAAAAGTGAAAGCGTGTCTCT 59.690 43.478 0.00 0.00 0.00 3.10
116 117 2.540973 GGGTGAAAAGTGAAAGCGTGTC 60.541 50.000 0.00 0.00 0.00 3.67
139 141 1.538047 TGTAGGGACTGTACCGTGTC 58.462 55.000 2.75 0.00 41.52 3.67
140 142 1.615392 GTTGTAGGGACTGTACCGTGT 59.385 52.381 2.75 0.00 41.52 4.49
141 143 1.614903 TGTTGTAGGGACTGTACCGTG 59.385 52.381 2.75 0.00 41.52 4.94
166 170 4.508861 CGGAAGAGAACGGTCAACTTTAAA 59.491 41.667 1.87 0.00 0.00 1.52
183 187 2.817844 TGACGATTCAAGACTCGGAAGA 59.182 45.455 13.20 0.00 39.16 2.87
186 190 2.667448 CGTTGACGATTCAAGACTCGGA 60.667 50.000 13.20 0.00 42.60 4.55
187 191 1.649171 CGTTGACGATTCAAGACTCGG 59.351 52.381 13.20 0.00 42.60 4.63
193 197 1.997606 GTACCCCGTTGACGATTCAAG 59.002 52.381 4.91 0.00 42.60 3.02
201 205 0.108945 CTTCCTCGTACCCCGTTGAC 60.109 60.000 0.00 0.00 37.94 3.18
228 232 7.209475 ACTTGCTCTTCTTTCTATCTATCAGC 58.791 38.462 0.00 0.00 0.00 4.26
229 233 7.591057 CGACTTGCTCTTCTTTCTATCTATCAG 59.409 40.741 0.00 0.00 0.00 2.90
230 234 7.421599 CGACTTGCTCTTCTTTCTATCTATCA 58.578 38.462 0.00 0.00 0.00 2.15
233 242 5.067936 CCCGACTTGCTCTTCTTTCTATCTA 59.932 44.000 0.00 0.00 0.00 1.98
237 246 3.056749 GTCCCGACTTGCTCTTCTTTCTA 60.057 47.826 0.00 0.00 0.00 2.10
242 251 1.878656 CGGTCCCGACTTGCTCTTCT 61.879 60.000 0.00 0.00 42.83 2.85
243 252 1.446272 CGGTCCCGACTTGCTCTTC 60.446 63.158 0.00 0.00 42.83 2.87
244 253 2.657237 CGGTCCCGACTTGCTCTT 59.343 61.111 0.00 0.00 42.83 2.85
245 254 3.382832 CCGGTCCCGACTTGCTCT 61.383 66.667 7.42 0.00 42.83 4.09
293 302 1.909141 CTTCAAGTGAGCGCTGCTGG 61.909 60.000 18.48 10.92 39.88 4.85
295 304 2.323580 GCTTCAAGTGAGCGCTGCT 61.324 57.895 18.48 10.43 43.88 4.24
303 312 1.289066 CGGTCGGAGCTTCAAGTGA 59.711 57.895 5.58 0.00 0.00 3.41
304 313 0.600255 AACGGTCGGAGCTTCAAGTG 60.600 55.000 5.58 0.00 0.00 3.16
305 314 0.319641 GAACGGTCGGAGCTTCAAGT 60.320 55.000 5.58 0.00 0.00 3.16
307 316 0.038526 GAGAACGGTCGGAGCTTCAA 60.039 55.000 16.16 0.00 0.00 2.69
308 317 1.176619 TGAGAACGGTCGGAGCTTCA 61.177 55.000 16.16 8.42 0.00 3.02
309 318 0.038526 TTGAGAACGGTCGGAGCTTC 60.039 55.000 5.58 8.12 0.00 3.86
310 319 0.319641 GTTGAGAACGGTCGGAGCTT 60.320 55.000 5.58 0.00 0.00 3.74
312 321 0.389948 ATGTTGAGAACGGTCGGAGC 60.390 55.000 0.00 0.00 0.00 4.70
315 324 2.359792 CGATGTTGAGAACGGTCGG 58.640 57.895 0.00 0.00 38.01 4.79
316 325 1.076533 CCCGATGTTGAGAACGGTCG 61.077 60.000 0.00 0.00 43.22 4.79
318 327 0.246635 CTCCCGATGTTGAGAACGGT 59.753 55.000 0.00 0.00 43.22 4.83
319 328 0.530744 TCTCCCGATGTTGAGAACGG 59.469 55.000 0.00 0.00 44.16 4.44
320 329 1.472878 TCTCTCCCGATGTTGAGAACG 59.527 52.381 0.00 0.00 37.19 3.95
321 330 3.131223 TGATCTCTCCCGATGTTGAGAAC 59.869 47.826 0.00 0.00 38.77 3.01
322 331 3.365472 TGATCTCTCCCGATGTTGAGAA 58.635 45.455 0.00 0.00 38.77 2.87
323 332 2.954989 CTGATCTCTCCCGATGTTGAGA 59.045 50.000 0.00 0.00 39.47 3.27
326 343 2.954989 TCTCTGATCTCTCCCGATGTTG 59.045 50.000 0.00 0.00 0.00 3.33
335 352 8.196771 AGTACAAATCAACATCTCTGATCTCTC 58.803 37.037 0.00 0.00 32.26 3.20
342 359 6.128445 GGTGTGAGTACAAATCAACATCTCTG 60.128 42.308 0.00 0.00 38.82 3.35
343 360 5.934625 GGTGTGAGTACAAATCAACATCTCT 59.065 40.000 0.00 0.00 38.82 3.10
344 361 5.700832 TGGTGTGAGTACAAATCAACATCTC 59.299 40.000 0.00 0.00 38.82 2.75
345 362 5.620206 TGGTGTGAGTACAAATCAACATCT 58.380 37.500 0.00 0.00 38.82 2.90
346 363 5.940192 TGGTGTGAGTACAAATCAACATC 57.060 39.130 0.00 0.00 38.82 3.06
347 364 6.265196 ACAATGGTGTGAGTACAAATCAACAT 59.735 34.615 0.00 0.59 38.82 2.71
349 366 6.072112 ACAATGGTGTGAGTACAAATCAAC 57.928 37.500 0.00 0.00 38.82 3.18
350 367 6.096141 ACAACAATGGTGTGAGTACAAATCAA 59.904 34.615 1.82 0.00 38.82 2.57
351 368 5.592282 ACAACAATGGTGTGAGTACAAATCA 59.408 36.000 1.82 0.00 38.82 2.57
352 369 5.914635 CACAACAATGGTGTGAGTACAAATC 59.085 40.000 25.84 0.00 38.82 2.17
353 370 5.359576 ACACAACAATGGTGTGAGTACAAAT 59.640 36.000 34.73 9.63 46.99 2.32
355 372 4.265893 ACACAACAATGGTGTGAGTACAA 58.734 39.130 34.73 0.00 46.99 2.41
356 373 3.879998 ACACAACAATGGTGTGAGTACA 58.120 40.909 34.73 0.00 46.99 2.90
364 381 4.382457 CGAAATGCTAACACAACAATGGTG 59.618 41.667 0.00 0.00 41.95 4.17
386 403 5.565259 CACTAAACAGCACATTTCTTAAGCG 59.435 40.000 0.00 0.00 0.00 4.68
389 406 6.437928 CAGCACTAAACAGCACATTTCTTAA 58.562 36.000 0.00 0.00 0.00 1.85
393 410 3.568538 CCAGCACTAAACAGCACATTTC 58.431 45.455 0.00 0.00 0.00 2.17
395 412 1.270550 GCCAGCACTAAACAGCACATT 59.729 47.619 0.00 0.00 0.00 2.71
396 413 0.883833 GCCAGCACTAAACAGCACAT 59.116 50.000 0.00 0.00 0.00 3.21
397 414 0.465278 TGCCAGCACTAAACAGCACA 60.465 50.000 0.00 0.00 0.00 4.57
398 415 0.040067 GTGCCAGCACTAAACAGCAC 60.040 55.000 15.41 0.00 43.12 4.40
399 416 0.465278 TGTGCCAGCACTAAACAGCA 60.465 50.000 22.29 0.00 46.30 4.41
401 418 1.882912 TCTGTGCCAGCACTAAACAG 58.117 50.000 22.29 11.74 46.30 3.16
403 420 1.266989 GGTTCTGTGCCAGCACTAAAC 59.733 52.381 22.29 22.09 46.30 2.01
404 421 1.133945 TGGTTCTGTGCCAGCACTAAA 60.134 47.619 22.29 13.69 46.30 1.85
406 423 0.250295 GTGGTTCTGTGCCAGCACTA 60.250 55.000 22.29 9.01 46.30 2.74
407 424 1.526917 GTGGTTCTGTGCCAGCACT 60.527 57.895 22.29 0.00 46.30 4.40
408 425 1.510480 GAGTGGTTCTGTGCCAGCAC 61.510 60.000 15.80 15.80 46.33 4.40
409 426 1.227943 GAGTGGTTCTGTGCCAGCA 60.228 57.895 0.00 0.00 36.57 4.41
410 427 1.968540 GGAGTGGTTCTGTGCCAGC 60.969 63.158 0.00 0.00 36.57 4.85
411 428 0.886490 GTGGAGTGGTTCTGTGCCAG 60.886 60.000 0.00 0.00 36.57 4.85
412 429 1.148273 GTGGAGTGGTTCTGTGCCA 59.852 57.895 0.00 0.00 0.00 4.92
413 430 0.886490 CAGTGGAGTGGTTCTGTGCC 60.886 60.000 0.00 0.00 0.00 5.01
414 431 0.179045 ACAGTGGAGTGGTTCTGTGC 60.179 55.000 0.00 0.00 39.27 4.57
415 432 3.469008 TTACAGTGGAGTGGTTCTGTG 57.531 47.619 6.88 0.00 40.61 3.66
418 435 6.875972 ATAGATTTACAGTGGAGTGGTTCT 57.124 37.500 0.00 0.00 0.00 3.01
420 437 8.211629 GGATTATAGATTTACAGTGGAGTGGTT 58.788 37.037 0.00 0.00 0.00 3.67
421 438 7.202102 GGGATTATAGATTTACAGTGGAGTGGT 60.202 40.741 0.00 0.00 0.00 4.16
422 439 7.162082 GGGATTATAGATTTACAGTGGAGTGG 58.838 42.308 0.00 0.00 0.00 4.00
423 440 6.868864 CGGGATTATAGATTTACAGTGGAGTG 59.131 42.308 0.00 0.00 0.00 3.51
424 441 6.553852 ACGGGATTATAGATTTACAGTGGAGT 59.446 38.462 0.00 0.00 0.00 3.85
427 444 6.522054 ACACGGGATTATAGATTTACAGTGG 58.478 40.000 0.00 0.00 0.00 4.00
428 445 7.042051 CCAACACGGGATTATAGATTTACAGTG 60.042 40.741 0.00 0.00 0.00 3.66
429 446 6.990349 CCAACACGGGATTATAGATTTACAGT 59.010 38.462 0.00 0.00 0.00 3.55
431 448 6.891388 ACCAACACGGGATTATAGATTTACA 58.109 36.000 0.00 0.00 40.22 2.41
432 449 6.426025 GGACCAACACGGGATTATAGATTTAC 59.574 42.308 0.00 0.00 40.22 2.01
433 450 6.527423 GGACCAACACGGGATTATAGATTTA 58.473 40.000 0.00 0.00 40.22 1.40
434 451 5.374071 GGACCAACACGGGATTATAGATTT 58.626 41.667 0.00 0.00 40.22 2.17
435 452 4.502604 CGGACCAACACGGGATTATAGATT 60.503 45.833 0.00 0.00 40.22 2.40
440 457 0.906775 ACGGACCAACACGGGATTAT 59.093 50.000 0.00 0.00 40.22 1.28
443 460 1.593265 GTACGGACCAACACGGGAT 59.407 57.895 0.00 0.00 40.22 3.85
444 461 2.573083 GGTACGGACCAACACGGGA 61.573 63.158 13.46 0.00 46.12 5.14
453 470 6.346912 CCAAGAGGAATATCGGTACGGACC 62.347 54.167 6.79 6.79 46.95 4.46
454 471 3.305199 CCAAGAGGAATATCGGTACGGAC 60.305 52.174 5.12 0.00 46.95 4.79
455 472 2.889045 CCAAGAGGAATATCGGTACGGA 59.111 50.000 5.51 5.51 46.95 4.69
487 504 2.307392 TCAGATGGGATTCCGTTTCCAA 59.693 45.455 0.00 0.00 34.77 3.53
525 542 3.368116 CCTGGACTAACCCGTGAAGTAAG 60.368 52.174 0.00 0.00 38.00 2.34
527 544 2.173519 CCTGGACTAACCCGTGAAGTA 58.826 52.381 0.00 0.00 38.00 2.24
613 657 2.626780 CGGTCTGACTCTGCGACCA 61.627 63.158 7.85 0.00 45.83 4.02
730 779 6.138761 CGTTTGGATGTCTTTCTTCTTTCTG 58.861 40.000 0.00 0.00 0.00 3.02
777 836 4.716977 GGAGGAGTGGACGGGGGT 62.717 72.222 0.00 0.00 0.00 4.95
782 849 2.663196 GTTGGGGAGGAGTGGACG 59.337 66.667 0.00 0.00 0.00 4.79
783 850 2.603652 GGGTTGGGGAGGAGTGGAC 61.604 68.421 0.00 0.00 0.00 4.02
784 851 2.204090 GGGTTGGGGAGGAGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
786 853 3.717294 CGGGGTTGGGGAGGAGTG 61.717 72.222 0.00 0.00 0.00 3.51
840 907 3.796504 GCGGACGGACGGATTAAATTAGA 60.797 47.826 3.28 0.00 0.00 2.10
869 936 2.444895 AGGATCAGAGGACGGGGC 60.445 66.667 0.00 0.00 0.00 5.80
872 939 1.993956 ATCAGAGGATCAGAGGACGG 58.006 55.000 0.00 0.00 32.81 4.79
882 949 1.822854 CGGAGCAGAGGATCAGAGGAT 60.823 57.143 0.00 0.00 37.82 3.24
883 950 0.467106 CGGAGCAGAGGATCAGAGGA 60.467 60.000 0.00 0.00 37.82 3.71
902 969 3.851128 GGTGGCGGGAGTAGGAGC 61.851 72.222 0.00 0.00 0.00 4.70
903 970 3.528370 CGGTGGCGGGAGTAGGAG 61.528 72.222 0.00 0.00 0.00 3.69
904 971 4.371417 ACGGTGGCGGGAGTAGGA 62.371 66.667 0.00 0.00 0.00 2.94
905 972 3.834799 GACGGTGGCGGGAGTAGG 61.835 72.222 0.00 0.00 0.00 3.18
907 974 3.376078 GTGACGGTGGCGGGAGTA 61.376 66.667 0.00 0.00 0.00 2.59
1015 1090 3.161450 GGCGAGCTGGGGTATGGA 61.161 66.667 0.00 0.00 0.00 3.41
1813 4436 2.121645 CGAAGGCCGGGTAGTACAT 58.878 57.895 2.18 0.00 33.91 2.29
1928 4551 4.308458 CCGCCTCGTTGTCCACCA 62.308 66.667 0.00 0.00 0.00 4.17
1931 4554 2.579657 ATCACCGCCTCGTTGTCCA 61.580 57.895 0.00 0.00 0.00 4.02
2196 4819 2.806856 GCAGATGCCAGCGAAGACG 61.807 63.158 0.00 0.00 37.57 4.18
2217 4840 4.023963 CCGAAGACGAAGCAGTAGATGATA 60.024 45.833 0.00 0.00 42.66 2.15
2463 5098 0.251209 TGTACTCCTCGGTGTGCTCT 60.251 55.000 7.55 0.00 0.00 4.09
2520 5155 3.470888 CCGATCTTGGCCTCCGGT 61.471 66.667 3.32 0.00 35.83 5.28
2556 5191 1.302993 GAGCTTGCCCCGGTAAACA 60.303 57.895 0.00 0.00 0.00 2.83
2559 5194 3.723922 GGGAGCTTGCCCCGGTAA 61.724 66.667 0.00 0.00 42.62 2.85
3047 6476 4.994471 TGGACAGGTGCTGCTGCG 62.994 66.667 11.21 0.00 43.34 5.18
3262 6694 2.670934 CAGCACCTTGCCGAGCTT 60.671 61.111 0.00 0.00 46.52 3.74
3541 6977 2.332362 TTTAGCTACTCCGCGAGCCG 62.332 60.000 8.23 0.00 39.65 5.52
3675 7113 3.055312 ACCTCTCCGGTTCCAAAATCTAC 60.055 47.826 0.00 0.00 46.37 2.59
3704 7142 1.529865 CAGCACAGATCACACACACAG 59.470 52.381 0.00 0.00 0.00 3.66
3709 7147 2.845363 ATCACAGCACAGATCACACA 57.155 45.000 0.00 0.00 0.00 3.72
3722 7160 4.916831 GTGAGATGAGCGAGATAATCACAG 59.083 45.833 0.00 0.00 36.64 3.66
3735 7173 5.368256 AGAACAAAATGTGTGAGATGAGC 57.632 39.130 0.00 0.00 40.60 4.26
3739 7177 5.221303 CCACCAAGAACAAAATGTGTGAGAT 60.221 40.000 0.00 0.00 40.60 2.75
3796 7234 1.549203 CATGTTCCAAACCAGGGGAG 58.451 55.000 0.00 0.00 34.02 4.30
3797 7235 0.541764 GCATGTTCCAAACCAGGGGA 60.542 55.000 0.00 0.00 0.00 4.81
3798 7236 0.831288 TGCATGTTCCAAACCAGGGG 60.831 55.000 0.00 0.00 0.00 4.79
3799 7237 1.066716 CATGCATGTTCCAAACCAGGG 60.067 52.381 18.91 0.00 0.00 4.45
3800 7238 1.894466 TCATGCATGTTCCAAACCAGG 59.106 47.619 25.43 0.00 0.00 4.45
3801 7239 2.821378 TCTCATGCATGTTCCAAACCAG 59.179 45.455 25.43 12.50 0.00 4.00
3802 7240 2.874014 TCTCATGCATGTTCCAAACCA 58.126 42.857 25.43 2.73 0.00 3.67
3803 7241 3.940209 TTCTCATGCATGTTCCAAACC 57.060 42.857 25.43 0.00 0.00 3.27
3804 7242 6.790285 ATTTTTCTCATGCATGTTCCAAAC 57.210 33.333 25.43 0.00 0.00 2.93
3805 7243 7.041235 GGAAATTTTTCTCATGCATGTTCCAAA 60.041 33.333 25.18 19.98 37.35 3.28
3806 7244 6.427547 GGAAATTTTTCTCATGCATGTTCCAA 59.572 34.615 25.18 15.55 37.35 3.53
3807 7245 5.933463 GGAAATTTTTCTCATGCATGTTCCA 59.067 36.000 25.18 10.12 37.35 3.53
3808 7246 5.933463 TGGAAATTTTTCTCATGCATGTTCC 59.067 36.000 25.43 24.66 37.35 3.62
3809 7247 6.091713 CCTGGAAATTTTTCTCATGCATGTTC 59.908 38.462 25.43 17.71 37.35 3.18
3810 7248 5.935789 CCTGGAAATTTTTCTCATGCATGTT 59.064 36.000 25.43 10.37 37.35 2.71
3811 7249 5.012354 ACCTGGAAATTTTTCTCATGCATGT 59.988 36.000 25.43 3.36 37.35 3.21
3812 7250 5.484715 ACCTGGAAATTTTTCTCATGCATG 58.515 37.500 21.07 21.07 37.35 4.06
3813 7251 5.750352 ACCTGGAAATTTTTCTCATGCAT 57.250 34.783 0.00 0.00 37.35 3.96
3814 7252 5.305128 AGAACCTGGAAATTTTTCTCATGCA 59.695 36.000 0.00 0.00 37.35 3.96
3815 7253 5.787380 AGAACCTGGAAATTTTTCTCATGC 58.213 37.500 0.00 0.00 37.35 4.06
3816 7254 6.985117 TGAGAACCTGGAAATTTTTCTCATG 58.015 36.000 20.63 6.76 44.51 3.07
3818 7256 6.183360 GGTTGAGAACCTGGAAATTTTTCTCA 60.183 38.462 20.63 20.63 46.55 3.27
3843 7281 3.380320 TGATGCCTCAAAAGCAGATGATG 59.620 43.478 0.00 0.00 44.90 3.07
3847 7285 3.015327 GACTGATGCCTCAAAAGCAGAT 58.985 45.455 0.00 0.00 44.90 2.90
3853 7301 2.238521 GTTGGGACTGATGCCTCAAAA 58.761 47.619 0.00 0.00 37.19 2.44
3866 7314 3.749088 TGTTCACATTATCGTGTTGGGAC 59.251 43.478 0.00 0.00 38.12 4.46
3872 7320 4.252878 TGATGCTGTTCACATTATCGTGT 58.747 39.130 0.00 0.00 38.12 4.49
3890 7338 2.730928 GTGGTTTTGGAACGCAATGATG 59.269 45.455 0.00 0.00 36.61 3.07
3942 7401 2.672996 GCCCGAAAGCTGCTTGGA 60.673 61.111 16.73 0.00 0.00 3.53
3983 7444 2.555757 AGATGCTCGACGATGATGATCA 59.444 45.455 0.00 0.00 0.00 2.92
4075 7539 0.824109 TTGACCGCTCCATACTCCTG 59.176 55.000 0.00 0.00 0.00 3.86
4076 7540 1.568504 TTTGACCGCTCCATACTCCT 58.431 50.000 0.00 0.00 0.00 3.69
4077 7541 2.622064 ATTTGACCGCTCCATACTCC 57.378 50.000 0.00 0.00 0.00 3.85
4078 7542 4.192317 AGAAATTTGACCGCTCCATACTC 58.808 43.478 0.00 0.00 0.00 2.59
4079 7543 4.222124 AGAAATTTGACCGCTCCATACT 57.778 40.909 0.00 0.00 0.00 2.12
4080 7544 4.965119 AAGAAATTTGACCGCTCCATAC 57.035 40.909 0.00 0.00 0.00 2.39
4081 7545 7.201785 GGAATAAAGAAATTTGACCGCTCCATA 60.202 37.037 0.00 0.00 0.00 2.74
4139 7607 2.983791 GAACCCCCGATTGACCGA 59.016 61.111 0.00 0.00 0.00 4.69
4161 7639 2.750350 CAGCCCGGAACCACTTCT 59.250 61.111 0.73 0.00 0.00 2.85
4188 7666 0.463654 TCACACCAAACTTGCTCGCT 60.464 50.000 0.00 0.00 0.00 4.93
4198 7676 3.892588 GGTAGACCCAAAATCACACCAAA 59.107 43.478 0.00 0.00 0.00 3.28
4263 7743 1.104577 ACCGTTGGCCAAAATGACGT 61.105 50.000 22.47 7.87 32.26 4.34
4277 7758 1.245732 AAGAGCACGAGACTACCGTT 58.754 50.000 0.00 0.00 38.29 4.44
4278 7759 1.199558 GAAAGAGCACGAGACTACCGT 59.800 52.381 0.00 0.00 41.36 4.83
4292 7773 3.755378 CACACCATGAAGGAAGGAAAGAG 59.245 47.826 0.00 0.00 41.22 2.85
4293 7774 3.754965 CACACCATGAAGGAAGGAAAGA 58.245 45.455 0.00 0.00 41.22 2.52
4294 7775 2.229784 GCACACCATGAAGGAAGGAAAG 59.770 50.000 0.00 0.00 41.22 2.62
4295 7776 2.238521 GCACACCATGAAGGAAGGAAA 58.761 47.619 0.00 0.00 41.22 3.13
4296 7777 1.144708 TGCACACCATGAAGGAAGGAA 59.855 47.619 0.00 0.00 41.22 3.36
4297 7778 0.770499 TGCACACCATGAAGGAAGGA 59.230 50.000 0.00 0.00 41.22 3.36
4298 7779 1.171308 CTGCACACCATGAAGGAAGG 58.829 55.000 0.00 0.00 41.22 3.46
4299 7780 1.901591 ACTGCACACCATGAAGGAAG 58.098 50.000 0.00 0.00 38.50 3.46
4300 7781 2.363306 AACTGCACACCATGAAGGAA 57.637 45.000 0.00 0.00 38.50 3.36
4301 7782 2.229792 GAAACTGCACACCATGAAGGA 58.770 47.619 0.00 0.00 38.50 3.36
4302 7783 1.069022 CGAAACTGCACACCATGAAGG 60.069 52.381 0.00 0.00 38.50 3.46
4303 7784 1.872952 TCGAAACTGCACACCATGAAG 59.127 47.619 0.00 0.00 40.37 3.02
4304 7785 1.601903 GTCGAAACTGCACACCATGAA 59.398 47.619 0.00 0.00 0.00 2.57
4305 7786 1.225855 GTCGAAACTGCACACCATGA 58.774 50.000 0.00 0.00 0.00 3.07
4306 7787 0.943673 TGTCGAAACTGCACACCATG 59.056 50.000 0.00 0.00 0.00 3.66
4307 7788 1.333619 GTTGTCGAAACTGCACACCAT 59.666 47.619 0.00 0.00 0.00 3.55
4323 7804 5.279607 CCAATCCTTTTGTCATGATGGTTGT 60.280 40.000 0.00 0.00 0.00 3.32
4330 7811 4.081406 CCTGACCAATCCTTTTGTCATGA 58.919 43.478 0.00 0.00 37.02 3.07
4331 7812 4.081406 TCCTGACCAATCCTTTTGTCATG 58.919 43.478 0.00 0.00 37.02 3.07
4363 7844 2.857618 GCGTTGAAATTGATAACGGCA 58.142 42.857 17.92 0.00 45.12 5.69
4368 7849 5.116180 AGAGATCGGCGTTGAAATTGATAA 58.884 37.500 6.85 0.00 0.00 1.75
4370 7851 3.535561 AGAGATCGGCGTTGAAATTGAT 58.464 40.909 6.85 0.00 0.00 2.57
4459 7946 5.125417 CACATCATAAATCAAACCCCTTCGT 59.875 40.000 0.00 0.00 0.00 3.85
4468 7955 3.181488 CCGCAGCCACATCATAAATCAAA 60.181 43.478 0.00 0.00 0.00 2.69
4501 7988 0.661020 ACTTTTGAGTTTGCCGGACG 59.339 50.000 5.05 0.00 0.00 4.79
4509 7996 6.827586 TTTGGACAGTGTACTTTTGAGTTT 57.172 33.333 7.11 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.