Multiple sequence alignment - TraesCS1D01G072900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G072900 chr1D 100.000 4045 0 0 1 4045 53382862 53378818 0.000000e+00 7470.0
1 TraesCS1D01G072900 chr1D 91.525 236 20 0 3638 3873 59205914 59206149 3.900000e-85 326.0
2 TraesCS1D01G072900 chr1D 96.512 172 6 0 3874 4045 53367682 53367511 6.620000e-73 285.0
3 TraesCS1D01G072900 chr1D 92.935 184 11 2 3863 4045 392396152 392396334 2.400000e-67 267.0
4 TraesCS1D01G072900 chr1A 91.117 1092 63 22 624 1706 53189851 53188785 0.000000e+00 1448.0
5 TraesCS1D01G072900 chr1A 88.418 1062 62 12 2584 3641 53187788 53186784 0.000000e+00 1223.0
6 TraesCS1D01G072900 chr1A 93.870 522 20 5 1721 2242 53188731 53188222 0.000000e+00 776.0
7 TraesCS1D01G072900 chr1A 94.172 326 12 5 2269 2587 53188222 53187897 1.310000e-134 490.0
8 TraesCS1D01G072900 chr1A 84.273 337 33 11 15 335 53193109 53192777 1.090000e-80 311.0
9 TraesCS1D01G072900 chr1A 90.244 123 9 1 514 633 53192773 53192651 1.510000e-34 158.0
10 TraesCS1D01G072900 chr1B 88.815 1207 78 25 554 1718 87734218 87733027 0.000000e+00 1428.0
11 TraesCS1D01G072900 chr1B 87.246 1082 63 23 2584 3641 87731711 87730681 0.000000e+00 1164.0
12 TraesCS1D01G072900 chr1B 90.538 613 33 12 1721 2332 87732981 87732393 0.000000e+00 787.0
13 TraesCS1D01G072900 chr1B 95.021 241 10 1 2349 2587 87732093 87731853 1.060000e-100 377.0
14 TraesCS1D01G072900 chr1B 92.704 233 17 0 3641 3873 674369855 674369623 1.800000e-88 337.0
15 TraesCS1D01G072900 chr1B 82.388 335 46 6 15 338 87735274 87734942 3.080000e-71 279.0
16 TraesCS1D01G072900 chr7D 94.421 233 13 0 3641 3873 121689244 121689476 3.840000e-95 359.0
17 TraesCS1D01G072900 chr7D 94.382 178 9 1 3867 4043 292944643 292944820 5.150000e-69 272.0
18 TraesCS1D01G072900 chr7D 94.798 173 9 0 3873 4045 311362107 311361935 1.850000e-68 270.0
19 TraesCS1D01G072900 chr2B 93.966 232 14 0 3641 3872 22460137 22460368 6.430000e-93 351.0
20 TraesCS1D01G072900 chr5D 93.133 233 16 0 3638 3870 330267242 330267474 3.870000e-90 342.0
21 TraesCS1D01G072900 chr4D 93.506 231 14 1 3641 3870 393978316 393978546 3.870000e-90 342.0
22 TraesCS1D01G072900 chr4D 95.376 173 7 1 3874 4045 319981472 319981300 1.430000e-69 274.0
23 TraesCS1D01G072900 chr4D 93.923 181 9 2 3866 4045 224281467 224281288 5.150000e-69 272.0
24 TraesCS1D01G072900 chr3D 91.304 253 19 3 3623 3873 528793929 528793678 3.870000e-90 342.0
25 TraesCS1D01G072900 chr3D 93.011 186 10 3 3861 4045 109969733 109969916 6.660000e-68 268.0
26 TraesCS1D01G072900 chr3D 93.855 179 10 1 3868 4045 231485518 231485340 6.660000e-68 268.0
27 TraesCS1D01G072900 chr3D 87.500 96 12 0 3016 3111 278455100 278455195 1.190000e-20 111.0
28 TraesCS1D01G072900 chr3D 86.316 95 13 0 3017 3111 604678827 604678921 1.990000e-18 104.0
29 TraesCS1D01G072900 chr6B 92.735 234 17 0 3640 3873 5998952 5998719 5.010000e-89 339.0
30 TraesCS1D01G072900 chr2D 92.704 233 16 1 3641 3873 640154976 640154745 6.480000e-88 335.0
31 TraesCS1D01G072900 chr2D 80.702 114 22 0 2474 2587 425216313 425216200 5.570000e-14 89.8
32 TraesCS1D01G072900 chr5B 83.284 335 40 8 15 335 493923365 493923697 1.100000e-75 294.0
33 TraesCS1D01G072900 chr5B 91.667 192 10 2 488 676 493923684 493923872 1.120000e-65 261.0
34 TraesCS1D01G072900 chr6D 94.413 179 9 1 3868 4045 201939841 201940019 1.430000e-69 274.0
35 TraesCS1D01G072900 chr3B 88.776 98 10 1 3014 3111 601379840 601379936 7.100000e-23 119.0
36 TraesCS1D01G072900 chr3B 83.951 81 13 0 1935 2015 597089554 597089634 1.210000e-10 78.7
37 TraesCS1D01G072900 chr7A 86.316 95 12 1 3017 3111 646105821 646105728 7.150000e-18 102.0
38 TraesCS1D01G072900 chr4A 83.810 105 17 0 3016 3120 697381476 697381580 2.570000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G072900 chr1D 53378818 53382862 4044 True 7470.000000 7470 100.0000 1 4045 1 chr1D.!!$R2 4044
1 TraesCS1D01G072900 chr1A 53186784 53193109 6325 True 734.333333 1448 90.3490 15 3641 6 chr1A.!!$R1 3626
2 TraesCS1D01G072900 chr1B 87730681 87735274 4593 True 807.000000 1428 88.8016 15 3641 5 chr1B.!!$R2 3626
3 TraesCS1D01G072900 chr5B 493923365 493923872 507 False 277.500000 294 87.4755 15 676 2 chr5B.!!$F1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 459 0.033504 TCGAACTTGAGTGGGCTGAC 59.966 55.0 0.0 0.0 0.00 3.51 F
443 460 0.249868 CGAACTTGAGTGGGCTGACA 60.250 55.0 0.0 0.0 0.00 3.58 F
1584 5136 0.034670 ACCTTTCAGCAGGATGAGCC 60.035 55.0 0.0 0.0 39.69 4.70 F
1586 5138 0.255318 CTTTCAGCAGGATGAGCCCT 59.745 55.0 0.0 0.0 39.69 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 4933 0.108424 AGCAACACGAGATGGAGAGC 60.108 55.0 0.0 0.0 0.00 4.09 R
1948 5549 0.970937 TCTGCCCGTACTTCCTCCAG 60.971 60.0 0.0 0.0 0.00 3.86 R
2940 6986 0.167908 CGCACATGTAAACGCCACAT 59.832 50.0 0.0 0.0 37.09 3.21 R
3241 7297 0.179073 ATGGAATCGCAGGGAACTCG 60.179 55.0 0.0 0.0 40.21 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.625790 TGGTGAACCAAAGTGGCAATAC 59.374 45.455 0.00 0.00 44.35 1.89
110 117 4.694760 ATTCTTTTCAGGCTGCCTTTTT 57.305 36.364 20.79 0.00 0.00 1.94
113 120 3.068590 TCTTTTCAGGCTGCCTTTTTGAG 59.931 43.478 20.79 13.20 0.00 3.02
115 122 2.071778 TCAGGCTGCCTTTTTGAGTT 57.928 45.000 20.79 0.00 0.00 3.01
116 123 2.387757 TCAGGCTGCCTTTTTGAGTTT 58.612 42.857 20.79 0.00 0.00 2.66
119 126 2.765699 AGGCTGCCTTTTTGAGTTTTGA 59.234 40.909 17.22 0.00 0.00 2.69
121 128 3.430790 GGCTGCCTTTTTGAGTTTTGACT 60.431 43.478 12.43 0.00 0.00 3.41
122 129 4.183865 GCTGCCTTTTTGAGTTTTGACTT 58.816 39.130 0.00 0.00 0.00 3.01
123 130 4.631377 GCTGCCTTTTTGAGTTTTGACTTT 59.369 37.500 0.00 0.00 0.00 2.66
124 131 5.446340 GCTGCCTTTTTGAGTTTTGACTTTG 60.446 40.000 0.00 0.00 0.00 2.77
125 132 5.546526 TGCCTTTTTGAGTTTTGACTTTGT 58.453 33.333 0.00 0.00 0.00 2.83
126 133 6.692486 TGCCTTTTTGAGTTTTGACTTTGTA 58.308 32.000 0.00 0.00 0.00 2.41
127 134 7.327214 TGCCTTTTTGAGTTTTGACTTTGTAT 58.673 30.769 0.00 0.00 0.00 2.29
166 178 8.632906 AAAATGAAATATTTTGTGCCCAATCA 57.367 26.923 1.43 0.00 30.84 2.57
168 180 8.810990 AATGAAATATTTTGTGCCCAATCATT 57.189 26.923 1.43 1.10 32.22 2.57
169 181 7.846644 TGAAATATTTTGTGCCCAATCATTC 57.153 32.000 1.43 0.00 0.00 2.67
184 196 7.765360 GCCCAATCATTCAAAGATTCAACAATA 59.235 33.333 0.00 0.00 33.64 1.90
185 197 9.656040 CCCAATCATTCAAAGATTCAACAATAA 57.344 29.630 0.00 0.00 33.64 1.40
212 227 8.869897 TCGAGTTTTGACTTTGTAGCATAATAG 58.130 33.333 0.00 0.00 0.00 1.73
366 383 8.593492 AAATGAAATCAACTCAAAAGCTAACC 57.407 30.769 0.00 0.00 0.00 2.85
367 384 6.084326 TGAAATCAACTCAAAAGCTAACCC 57.916 37.500 0.00 0.00 0.00 4.11
368 385 5.833131 TGAAATCAACTCAAAAGCTAACCCT 59.167 36.000 0.00 0.00 0.00 4.34
369 386 5.966742 AATCAACTCAAAAGCTAACCCTC 57.033 39.130 0.00 0.00 0.00 4.30
370 387 3.399330 TCAACTCAAAAGCTAACCCTCG 58.601 45.455 0.00 0.00 0.00 4.63
371 388 3.139077 CAACTCAAAAGCTAACCCTCGT 58.861 45.455 0.00 0.00 0.00 4.18
372 389 3.487120 ACTCAAAAGCTAACCCTCGTT 57.513 42.857 0.00 0.00 35.90 3.85
373 390 3.139077 ACTCAAAAGCTAACCCTCGTTG 58.861 45.455 0.00 0.00 33.17 4.10
374 391 3.181458 ACTCAAAAGCTAACCCTCGTTGA 60.181 43.478 0.00 0.00 33.17 3.18
375 392 4.003648 CTCAAAAGCTAACCCTCGTTGAT 58.996 43.478 0.00 0.00 33.17 2.57
376 393 4.394729 TCAAAAGCTAACCCTCGTTGATT 58.605 39.130 0.00 0.00 33.17 2.57
377 394 4.825085 TCAAAAGCTAACCCTCGTTGATTT 59.175 37.500 0.00 0.00 33.17 2.17
378 395 5.300792 TCAAAAGCTAACCCTCGTTGATTTT 59.699 36.000 0.00 0.00 33.22 1.82
379 396 5.784578 AAAGCTAACCCTCGTTGATTTTT 57.215 34.783 0.00 0.00 33.17 1.94
400 417 6.583912 TTTTTATATGAGAAACTCCGCGAG 57.416 37.500 8.23 5.77 35.52 5.03
401 418 2.141535 ATATGAGAAACTCCGCGAGC 57.858 50.000 8.23 0.00 32.04 5.03
402 419 0.815095 TATGAGAAACTCCGCGAGCA 59.185 50.000 8.23 0.00 32.04 4.26
403 420 0.176680 ATGAGAAACTCCGCGAGCAT 59.823 50.000 8.23 0.00 32.04 3.79
404 421 0.458543 TGAGAAACTCCGCGAGCATC 60.459 55.000 8.23 5.48 32.04 3.91
405 422 0.458543 GAGAAACTCCGCGAGCATCA 60.459 55.000 8.23 0.00 32.04 3.07
406 423 0.176680 AGAAACTCCGCGAGCATCAT 59.823 50.000 8.23 0.00 32.04 2.45
407 424 0.302890 GAAACTCCGCGAGCATCATG 59.697 55.000 8.23 0.00 32.04 3.07
408 425 0.391661 AAACTCCGCGAGCATCATGT 60.392 50.000 8.23 0.00 32.04 3.21
409 426 1.086067 AACTCCGCGAGCATCATGTG 61.086 55.000 8.23 0.00 32.04 3.21
410 427 1.520120 CTCCGCGAGCATCATGTGT 60.520 57.895 8.23 0.00 33.17 3.72
411 428 1.485838 CTCCGCGAGCATCATGTGTC 61.486 60.000 8.23 0.00 33.17 3.67
412 429 1.520120 CCGCGAGCATCATGTGTCT 60.520 57.895 8.23 0.00 33.17 3.41
413 430 1.634753 CGCGAGCATCATGTGTCTG 59.365 57.895 0.00 0.00 33.17 3.51
414 431 0.803380 CGCGAGCATCATGTGTCTGA 60.803 55.000 0.00 0.00 33.17 3.27
415 432 0.928922 GCGAGCATCATGTGTCTGAG 59.071 55.000 0.00 0.00 33.17 3.35
416 433 1.738365 GCGAGCATCATGTGTCTGAGT 60.738 52.381 0.00 0.00 33.17 3.41
417 434 2.191802 CGAGCATCATGTGTCTGAGTC 58.808 52.381 0.00 0.00 33.17 3.36
418 435 2.191802 GAGCATCATGTGTCTGAGTCG 58.808 52.381 0.00 0.00 33.17 4.18
419 436 1.134877 AGCATCATGTGTCTGAGTCGG 60.135 52.381 0.00 0.00 0.00 4.79
420 437 1.931906 CATCATGTGTCTGAGTCGGG 58.068 55.000 0.00 0.00 0.00 5.14
421 438 1.478105 CATCATGTGTCTGAGTCGGGA 59.522 52.381 0.00 0.00 0.00 5.14
422 439 0.888619 TCATGTGTCTGAGTCGGGAC 59.111 55.000 0.00 4.25 0.00 4.46
423 440 0.891373 CATGTGTCTGAGTCGGGACT 59.109 55.000 14.34 0.00 45.84 3.85
440 457 2.832931 CTCGAACTTGAGTGGGCTG 58.167 57.895 0.00 0.00 0.00 4.85
441 458 0.318441 CTCGAACTTGAGTGGGCTGA 59.682 55.000 0.00 0.00 0.00 4.26
442 459 0.033504 TCGAACTTGAGTGGGCTGAC 59.966 55.000 0.00 0.00 0.00 3.51
443 460 0.249868 CGAACTTGAGTGGGCTGACA 60.250 55.000 0.00 0.00 0.00 3.58
444 461 1.517242 GAACTTGAGTGGGCTGACAG 58.483 55.000 0.00 0.00 0.00 3.51
445 462 0.536006 AACTTGAGTGGGCTGACAGC 60.536 55.000 19.55 19.55 41.46 4.40
446 463 1.374190 CTTGAGTGGGCTGACAGCT 59.626 57.895 25.92 7.03 41.99 4.24
447 464 0.610174 CTTGAGTGGGCTGACAGCTA 59.390 55.000 25.92 13.36 41.99 3.32
448 465 0.321671 TTGAGTGGGCTGACAGCTAC 59.678 55.000 25.92 22.79 41.99 3.58
449 466 1.219393 GAGTGGGCTGACAGCTACC 59.781 63.158 25.92 19.58 41.99 3.18
450 467 2.245438 GAGTGGGCTGACAGCTACCC 62.245 65.000 25.92 18.90 41.99 3.69
452 469 2.586792 GGGCTGACAGCTACCCAG 59.413 66.667 25.92 0.00 41.99 4.45
470 487 2.113139 CTGTCCAGCCAACGGGTT 59.887 61.111 0.00 0.00 36.17 4.11
471 488 2.203280 TGTCCAGCCAACGGGTTG 60.203 61.111 4.58 4.58 44.38 3.77
476 493 2.676471 AGCCAACGGGTTGATGCC 60.676 61.111 12.89 0.00 42.93 4.40
477 494 3.758931 GCCAACGGGTTGATGCCC 61.759 66.667 12.89 0.00 42.93 5.36
478 495 3.068064 CCAACGGGTTGATGCCCC 61.068 66.667 12.89 0.00 45.91 5.80
483 500 3.728373 GGGTTGATGCCCCGTCCT 61.728 66.667 0.00 0.00 42.89 3.85
484 501 2.124695 GGTTGATGCCCCGTCCTC 60.125 66.667 0.00 0.00 0.00 3.71
485 502 2.511600 GTTGATGCCCCGTCCTCG 60.512 66.667 0.00 0.00 0.00 4.63
506 523 7.331934 TCCTCGCTTGTATATAAATCAGAATGC 59.668 37.037 0.00 0.00 34.76 3.56
525 542 6.373774 AGAATGCTAGCATTGTTATATCTGCC 59.626 38.462 40.21 23.34 45.50 4.85
530 1207 3.987868 AGCATTGTTATATCTGCCGTACG 59.012 43.478 8.69 8.69 35.21 3.67
767 4271 1.375523 CTCGGAAACCCACTTCCCG 60.376 63.158 0.00 0.00 41.73 5.14
855 4359 0.253610 ACTCCAAACCACCACGTTCA 59.746 50.000 0.00 0.00 0.00 3.18
866 4370 1.873591 ACCACGTTCACATTTGAGCTC 59.126 47.619 6.82 6.82 30.96 4.09
916 4420 4.139234 GCGACCGGTACACCTCCC 62.139 72.222 7.34 0.00 0.00 4.30
933 4438 4.362476 CCGGGCTTGTTGCTTGCC 62.362 66.667 0.00 0.00 45.42 4.52
977 4482 1.303561 TCCACTACCGTGCTACCGT 60.304 57.895 0.00 0.00 39.86 4.83
978 4483 1.153901 CCACTACCGTGCTACCGTG 60.154 63.158 0.00 0.00 39.86 4.94
979 4484 1.804326 CACTACCGTGCTACCGTGC 60.804 63.158 0.00 0.00 33.82 5.34
998 4503 0.527817 CTCTACTTAAGGCGCCACCG 60.528 60.000 31.54 16.10 46.52 4.94
1031 4536 4.349636 TCCTGTCCTCTGTTTACCAATCAA 59.650 41.667 0.00 0.00 0.00 2.57
1055 4565 0.252467 ACCCCTCTCCCAAGTCTCAG 60.252 60.000 0.00 0.00 0.00 3.35
1065 4575 6.644347 TCTCCCAAGTCTCAGTTTCAATATC 58.356 40.000 0.00 0.00 0.00 1.63
1327 4872 1.523258 CTGCTTCTCCATCCCTGCG 60.523 63.158 0.00 0.00 0.00 5.18
1330 4875 3.764160 CTTCTCCATCCCTGCGGGC 62.764 68.421 5.85 0.00 43.94 6.13
1378 4923 1.477295 CCCGTTCTCCTCAACTACTCC 59.523 57.143 0.00 0.00 0.00 3.85
1388 4933 1.133598 TCAACTACTCCCATGTACGCG 59.866 52.381 3.53 3.53 0.00 6.01
1389 4934 0.179119 AACTACTCCCATGTACGCGC 60.179 55.000 5.73 0.00 0.00 6.86
1390 4935 1.035932 ACTACTCCCATGTACGCGCT 61.036 55.000 5.73 0.00 0.00 5.92
1408 4953 1.919918 CTCTCCATCTCGTGTTGCTC 58.080 55.000 0.00 0.00 0.00 4.26
1412 4957 0.376152 CCATCTCGTGTTGCTCATGC 59.624 55.000 0.00 0.00 40.20 4.06
1416 4961 2.202260 CGTGTTGCTCATGCGCAG 60.202 61.111 18.32 8.46 41.55 5.18
1421 4973 1.055338 GTTGCTCATGCGCAGTTTTC 58.945 50.000 18.32 4.32 41.55 2.29
1438 4990 7.035542 CAGTTTTCTGCTAGTTTCGTAGTAC 57.964 40.000 0.00 0.00 41.24 2.73
1439 4991 6.862090 CAGTTTTCTGCTAGTTTCGTAGTACT 59.138 38.462 0.00 0.00 41.24 2.73
1446 4998 4.669728 GCTAGTTTCGTAGTACTATGTGCG 59.330 45.833 19.29 12.03 0.00 5.34
1496 5048 2.079925 GCCTGTGTTTCTGTCAGATCC 58.920 52.381 2.68 0.00 0.00 3.36
1510 5062 3.140225 GATCCTGGCGTCTCCGACC 62.140 68.421 0.00 0.00 43.26 4.79
1584 5136 0.034670 ACCTTTCAGCAGGATGAGCC 60.035 55.000 0.00 0.00 39.69 4.70
1586 5138 0.255318 CTTTCAGCAGGATGAGCCCT 59.745 55.000 0.00 0.00 39.69 5.19
1591 5143 3.473647 CAGGATGAGCCCTGCCGA 61.474 66.667 0.00 0.00 46.16 5.54
1665 5217 2.053627 GGTCAACGCTCAAGCAAATTG 58.946 47.619 2.50 3.95 42.21 2.32
1764 5364 1.524621 ATGCACCGAGGCTGTATGC 60.525 57.895 0.00 0.00 41.94 3.14
1765 5365 1.976132 ATGCACCGAGGCTGTATGCT 61.976 55.000 12.92 0.00 42.39 3.79
1766 5366 1.326951 TGCACCGAGGCTGTATGCTA 61.327 55.000 12.92 0.35 42.39 3.49
1777 5377 6.347563 CGAGGCTGTATGCTACTAGTACTAAC 60.348 46.154 3.76 0.00 42.39 2.34
1867 5468 3.128188 CAGGAGCAGCAGCAGCAG 61.128 66.667 12.92 0.00 45.49 4.24
1948 5549 2.618053 CAGGTTGAGGACGGATACAAC 58.382 52.381 0.00 0.00 40.90 3.32
2098 5699 0.882927 TTGTCTACAAGGGCGCACAC 60.883 55.000 14.57 0.00 0.00 3.82
2168 5769 1.658717 GTCGTCGCGGAGGATCATG 60.659 63.158 6.13 0.00 36.25 3.07
2191 5792 4.154347 GGCTCGGAGCACTCTGGG 62.154 72.222 29.33 4.28 44.75 4.45
2241 5842 1.511305 GAGACGATGAGGCCGACAA 59.489 57.895 9.49 0.00 0.00 3.18
2242 5843 0.802607 GAGACGATGAGGCCGACAAC 60.803 60.000 9.49 6.49 0.00 3.32
2243 5844 2.126071 ACGATGAGGCCGACAACG 60.126 61.111 24.53 24.53 38.93 4.10
2253 5854 2.972505 CGACAACGGGTTGCAGCT 60.973 61.111 11.26 0.00 44.03 4.24
2254 5855 2.946762 GACAACGGGTTGCAGCTC 59.053 61.111 11.26 0.00 44.03 4.09
2255 5856 1.891919 GACAACGGGTTGCAGCTCA 60.892 57.895 11.26 0.00 44.03 4.26
2256 5857 1.845809 GACAACGGGTTGCAGCTCAG 61.846 60.000 11.26 0.00 44.03 3.35
2257 5858 1.893808 CAACGGGTTGCAGCTCAGT 60.894 57.895 0.00 0.00 33.45 3.41
2258 5859 1.893808 AACGGGTTGCAGCTCAGTG 60.894 57.895 0.00 0.00 0.00 3.66
2319 5920 6.772360 TGATCATTGCTTGCCAAATACTAA 57.228 33.333 0.00 0.00 36.92 2.24
2332 5933 8.767478 TGCCAAATACTAACTCTGTAAAGTAC 57.233 34.615 0.00 0.00 0.00 2.73
2334 5935 9.085250 GCCAAATACTAACTCTGTAAAGTACTC 57.915 37.037 0.00 0.00 0.00 2.59
2340 5941 7.983307 ACTAACTCTGTAAAGTACTCCATACG 58.017 38.462 0.00 0.00 38.97 3.06
2341 5942 6.830873 AACTCTGTAAAGTACTCCATACGT 57.169 37.500 0.00 0.00 38.97 3.57
2426 6312 0.807496 GTTGTCAGGAAGGAGCATGC 59.193 55.000 10.51 10.51 0.00 4.06
2427 6313 0.322816 TTGTCAGGAAGGAGCATGCC 60.323 55.000 15.66 5.80 0.00 4.40
2803 6849 1.103803 GTACACCCTCGAGATGCTCA 58.896 55.000 15.71 0.00 0.00 4.26
2940 6986 4.697756 CGCGGCTCTTGGTTCCCA 62.698 66.667 0.00 0.00 0.00 4.37
2965 7012 0.165079 CGTTTACATGTGCGTCCACC 59.835 55.000 9.11 0.00 41.35 4.61
2983 7030 8.464404 GCGTCCACCTGTACAATATAATAGATA 58.536 37.037 0.00 0.00 0.00 1.98
3115 7169 9.783081 AGCACATACTGATATTTGATCACATAA 57.217 29.630 5.69 0.00 0.00 1.90
3118 7172 9.783081 ACATACTGATATTTGATCACATAAGCA 57.217 29.630 5.69 6.63 0.00 3.91
3120 7174 9.783081 ATACTGATATTTGATCACATAAGCACA 57.217 29.630 5.69 4.27 0.00 4.57
3121 7175 8.687292 ACTGATATTTGATCACATAAGCACAT 57.313 30.769 5.69 0.00 0.00 3.21
3122 7176 9.783081 ACTGATATTTGATCACATAAGCACATA 57.217 29.630 5.69 0.00 0.00 2.29
3160 7214 5.182380 TGACACATCTACACATAACGTCTCA 59.818 40.000 0.00 0.00 0.00 3.27
3167 7221 2.756760 ACACATAACGTCTCATACCCGT 59.243 45.455 0.00 0.00 36.17 5.28
3171 7225 5.806502 CACATAACGTCTCATACCCGTTTTA 59.193 40.000 1.85 0.00 41.58 1.52
3184 7238 2.817844 CCCGTTTTAGGGTTTTCCTCTG 59.182 50.000 0.00 0.00 44.06 3.35
3186 7240 3.146847 CGTTTTAGGGTTTTCCTCTGCT 58.853 45.455 0.00 0.00 44.06 4.24
3217 7273 4.344474 GGCGGCTACGATCTCCGG 62.344 72.222 0.00 0.00 44.60 5.14
3227 7283 1.388065 CGATCTCCGGCAACTCCTCT 61.388 60.000 0.00 0.00 33.91 3.69
3241 7297 1.410882 CTCCTCTCCGGATTTGACCTC 59.589 57.143 3.57 0.00 42.12 3.85
3253 7309 2.154798 TTGACCTCGAGTTCCCTGCG 62.155 60.000 12.31 0.00 0.00 5.18
3262 7318 0.181350 AGTTCCCTGCGATTCCATCC 59.819 55.000 0.00 0.00 0.00 3.51
3276 7332 4.597404 TTCCATCCAAGAGAGATCATCG 57.403 45.455 0.00 0.00 0.00 3.84
3278 7334 2.299582 CCATCCAAGAGAGATCATCGCT 59.700 50.000 0.00 0.00 40.15 4.93
3308 7364 3.378512 AGACAAGCATAGACCTGGATCA 58.621 45.455 0.00 0.00 0.00 2.92
3359 7415 4.025896 CGAGCGAGAATTCTACTACTTCGA 60.026 45.833 8.25 0.00 0.00 3.71
3365 7421 7.121272 CGAGAATTCTACTACTTCGAGAGTTC 58.879 42.308 8.25 0.00 39.86 3.01
3371 7427 0.879090 TACTTCGAGAGTTCGCAGCA 59.121 50.000 5.74 0.00 42.66 4.41
3377 7433 1.645034 GAGAGTTCGCAGCAATGCTA 58.355 50.000 7.70 0.00 36.40 3.49
3433 7489 1.265905 GGCGTTGACGTGGAAGAAAAT 59.734 47.619 0.00 0.00 42.22 1.82
3464 7520 2.997315 CTGAGTCCTCGGGTGGCA 60.997 66.667 0.00 0.00 32.43 4.92
3574 7630 4.090819 AGGAAGACCTTGAGGAACTAGAC 58.909 47.826 3.59 0.00 45.36 2.59
3641 7697 0.405198 TTTCAGCCATGGAGCCTTCA 59.595 50.000 18.40 0.00 0.00 3.02
3642 7698 0.322816 TTCAGCCATGGAGCCTTCAC 60.323 55.000 18.40 0.00 0.00 3.18
3643 7699 1.203441 TCAGCCATGGAGCCTTCACT 61.203 55.000 18.40 0.00 0.00 3.41
3644 7700 0.543277 CAGCCATGGAGCCTTCACTA 59.457 55.000 18.40 0.00 0.00 2.74
3645 7701 0.835941 AGCCATGGAGCCTTCACTAG 59.164 55.000 18.40 0.00 0.00 2.57
3646 7702 0.543749 GCCATGGAGCCTTCACTAGT 59.456 55.000 18.40 0.00 0.00 2.57
3647 7703 1.745141 GCCATGGAGCCTTCACTAGTG 60.745 57.143 18.40 17.17 0.00 2.74
3648 7704 1.134280 CCATGGAGCCTTCACTAGTGG 60.134 57.143 22.48 8.19 0.00 4.00
3649 7705 1.833630 CATGGAGCCTTCACTAGTGGA 59.166 52.381 22.48 13.73 0.00 4.02
3650 7706 2.024176 TGGAGCCTTCACTAGTGGAA 57.976 50.000 22.48 13.77 0.00 3.53
3651 7707 2.334977 TGGAGCCTTCACTAGTGGAAA 58.665 47.619 22.48 9.69 0.00 3.13
3652 7708 2.708861 TGGAGCCTTCACTAGTGGAAAA 59.291 45.455 22.48 8.98 0.00 2.29
3653 7709 3.137544 TGGAGCCTTCACTAGTGGAAAAA 59.862 43.478 22.48 8.63 0.00 1.94
3673 7729 3.218227 GGAGCTAGTCCCGGTTCC 58.782 66.667 0.00 0.00 39.88 3.62
3674 7730 1.684734 GGAGCTAGTCCCGGTTCCA 60.685 63.158 0.00 0.00 39.88 3.53
3675 7731 1.677637 GGAGCTAGTCCCGGTTCCAG 61.678 65.000 0.00 0.00 39.88 3.86
3676 7732 0.683504 GAGCTAGTCCCGGTTCCAGA 60.684 60.000 0.00 0.00 0.00 3.86
3677 7733 0.684805 AGCTAGTCCCGGTTCCAGAG 60.685 60.000 0.00 0.00 0.00 3.35
3678 7734 1.677637 GCTAGTCCCGGTTCCAGAGG 61.678 65.000 0.00 0.00 0.00 3.69
3679 7735 1.001248 TAGTCCCGGTTCCAGAGGG 59.999 63.158 0.00 0.00 46.40 4.30
3680 7736 4.097361 GTCCCGGTTCCAGAGGGC 62.097 72.222 0.00 0.00 44.70 5.19
3683 7739 3.330720 CCGGTTCCAGAGGGCCTT 61.331 66.667 7.89 0.00 0.00 4.35
3684 7740 2.757077 CGGTTCCAGAGGGCCTTT 59.243 61.111 7.89 0.00 0.00 3.11
3685 7741 1.559065 CCGGTTCCAGAGGGCCTTTA 61.559 60.000 7.89 0.00 0.00 1.85
3686 7742 0.107654 CGGTTCCAGAGGGCCTTTAG 60.108 60.000 7.89 0.00 0.00 1.85
3687 7743 0.992695 GGTTCCAGAGGGCCTTTAGT 59.007 55.000 7.89 0.00 0.00 2.24
3688 7744 1.065345 GGTTCCAGAGGGCCTTTAGTC 60.065 57.143 7.89 0.00 0.00 2.59
3689 7745 1.065345 GTTCCAGAGGGCCTTTAGTCC 60.065 57.143 7.89 0.00 0.00 3.85
3690 7746 0.620700 TCCAGAGGGCCTTTAGTCCC 60.621 60.000 7.89 0.00 42.94 4.46
3694 7750 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
3695 7751 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
3696 7752 1.559965 GGGCCTTTAGTCCCGGTTCT 61.560 60.000 0.84 0.15 32.00 3.01
3697 7753 0.392595 GGCCTTTAGTCCCGGTTCTG 60.393 60.000 0.00 0.00 0.00 3.02
3698 7754 0.392595 GCCTTTAGTCCCGGTTCTGG 60.393 60.000 0.00 0.00 0.00 3.86
3699 7755 1.272807 CCTTTAGTCCCGGTTCTGGA 58.727 55.000 0.00 0.00 0.00 3.86
3700 7756 1.626825 CCTTTAGTCCCGGTTCTGGAA 59.373 52.381 0.00 0.00 32.59 3.53
3701 7757 2.614734 CCTTTAGTCCCGGTTCTGGAAC 60.615 54.545 0.00 5.02 40.45 3.62
3710 7766 3.407443 GTTCTGGAACCGGGACAAA 57.593 52.632 6.32 0.00 35.36 2.83
3711 7767 1.682740 GTTCTGGAACCGGGACAAAA 58.317 50.000 6.32 0.00 35.36 2.44
3712 7768 1.335810 GTTCTGGAACCGGGACAAAAC 59.664 52.381 6.32 0.71 35.36 2.43
3713 7769 0.533308 TCTGGAACCGGGACAAAACG 60.533 55.000 6.32 0.00 0.00 3.60
3718 7774 3.045492 CCGGGACAAAACGGTCGG 61.045 66.667 0.00 0.00 44.85 4.79
3719 7775 3.045492 CGGGACAAAACGGTCGGG 61.045 66.667 0.00 0.00 38.70 5.14
3720 7776 2.426887 GGGACAAAACGGTCGGGA 59.573 61.111 0.00 0.00 38.70 5.14
3721 7777 1.962822 GGGACAAAACGGTCGGGAC 60.963 63.158 0.00 0.00 38.70 4.46
3722 7778 1.070275 GGACAAAACGGTCGGGACT 59.930 57.895 0.00 0.00 38.70 3.85
3723 7779 0.318120 GGACAAAACGGTCGGGACTA 59.682 55.000 0.00 0.00 38.70 2.59
3724 7780 1.270252 GGACAAAACGGTCGGGACTAA 60.270 52.381 0.00 0.00 38.70 2.24
3725 7781 2.482864 GACAAAACGGTCGGGACTAAA 58.517 47.619 0.00 0.00 0.00 1.85
3726 7782 2.477754 GACAAAACGGTCGGGACTAAAG 59.522 50.000 0.00 0.00 0.00 1.85
3727 7783 1.196127 CAAAACGGTCGGGACTAAAGC 59.804 52.381 0.00 0.00 0.00 3.51
3728 7784 0.321034 AAACGGTCGGGACTAAAGCC 60.321 55.000 0.00 0.00 0.00 4.35
3729 7785 2.176314 AACGGTCGGGACTAAAGCCC 62.176 60.000 0.00 0.00 42.41 5.19
3730 7786 2.652095 CGGTCGGGACTAAAGCCCA 61.652 63.158 0.00 0.00 46.36 5.36
3731 7787 1.681076 GGTCGGGACTAAAGCCCAA 59.319 57.895 0.00 0.00 46.36 4.12
3732 7788 0.037160 GGTCGGGACTAAAGCCCAAA 59.963 55.000 0.00 0.00 46.36 3.28
3733 7789 1.546099 GGTCGGGACTAAAGCCCAAAA 60.546 52.381 0.00 0.00 46.36 2.44
3734 7790 1.538512 GTCGGGACTAAAGCCCAAAAC 59.461 52.381 0.00 0.00 46.36 2.43
3735 7791 0.885879 CGGGACTAAAGCCCAAAACC 59.114 55.000 0.00 0.00 46.36 3.27
3736 7792 1.546998 CGGGACTAAAGCCCAAAACCT 60.547 52.381 0.00 0.00 46.36 3.50
3737 7793 2.605257 GGGACTAAAGCCCAAAACCTT 58.395 47.619 0.00 0.00 45.31 3.50
3738 7794 2.969950 GGGACTAAAGCCCAAAACCTTT 59.030 45.455 0.00 0.00 45.31 3.11
3739 7795 4.154176 GGGACTAAAGCCCAAAACCTTTA 58.846 43.478 0.00 0.00 45.31 1.85
3743 7799 5.386958 CTAAAGCCCAAAACCTTTAGTCC 57.613 43.478 10.46 0.00 42.49 3.85
3744 7800 2.304221 AGCCCAAAACCTTTAGTCCC 57.696 50.000 0.00 0.00 0.00 4.46
3745 7801 0.885879 GCCCAAAACCTTTAGTCCCG 59.114 55.000 0.00 0.00 0.00 5.14
3746 7802 1.541379 CCCAAAACCTTTAGTCCCGG 58.459 55.000 0.00 0.00 0.00 5.73
3747 7803 1.202964 CCCAAAACCTTTAGTCCCGGT 60.203 52.381 0.00 0.00 0.00 5.28
3748 7804 2.589720 CCAAAACCTTTAGTCCCGGTT 58.410 47.619 0.00 0.00 42.52 4.44
3749 7805 2.555325 CCAAAACCTTTAGTCCCGGTTC 59.445 50.000 0.00 0.00 39.97 3.62
3750 7806 2.174363 AAACCTTTAGTCCCGGTTCG 57.826 50.000 0.00 0.00 39.97 3.95
3751 7807 0.321034 AACCTTTAGTCCCGGTTCGC 60.321 55.000 0.00 0.00 36.32 4.70
3752 7808 1.190178 ACCTTTAGTCCCGGTTCGCT 61.190 55.000 0.00 0.00 0.00 4.93
3753 7809 0.036671 CCTTTAGTCCCGGTTCGCTT 60.037 55.000 0.00 0.00 0.00 4.68
3754 7810 1.205417 CCTTTAGTCCCGGTTCGCTTA 59.795 52.381 0.00 0.00 0.00 3.09
3755 7811 2.265683 CTTTAGTCCCGGTTCGCTTAC 58.734 52.381 0.00 0.00 0.00 2.34
3756 7812 0.171007 TTAGTCCCGGTTCGCTTACG 59.829 55.000 0.00 0.00 42.01 3.18
3766 7822 4.979204 CGCTTACGAACTGGGACA 57.021 55.556 0.00 0.00 43.93 4.02
3777 7833 2.610859 TGGGACAGAAGGGGCTCC 60.611 66.667 0.00 0.00 0.00 4.70
3778 7834 2.610859 GGGACAGAAGGGGCTCCA 60.611 66.667 4.79 0.00 34.83 3.86
3779 7835 2.671682 GGACAGAAGGGGCTCCAC 59.328 66.667 4.79 0.00 34.83 4.02
3780 7836 2.266055 GACAGAAGGGGCTCCACG 59.734 66.667 4.79 0.00 34.83 4.94
3781 7837 2.526873 ACAGAAGGGGCTCCACGT 60.527 61.111 4.79 0.00 34.83 4.49
3782 7838 2.046892 CAGAAGGGGCTCCACGTG 60.047 66.667 4.79 9.08 34.83 4.49
3783 7839 3.322466 AGAAGGGGCTCCACGTGG 61.322 66.667 29.26 29.26 34.83 4.94
3812 7868 4.785453 CGCCCAAGCAGGAGGACC 62.785 72.222 0.00 0.00 41.22 4.46
3814 7870 2.911926 GCCCAAGCAGGAGGACCTT 61.912 63.158 0.00 0.00 45.36 3.50
3815 7871 1.770324 CCCAAGCAGGAGGACCTTT 59.230 57.895 0.00 0.00 45.36 3.11
3816 7872 0.991920 CCCAAGCAGGAGGACCTTTA 59.008 55.000 0.00 0.00 45.36 1.85
3817 7873 1.065126 CCCAAGCAGGAGGACCTTTAG 60.065 57.143 0.00 0.00 45.36 1.85
3818 7874 1.630878 CCAAGCAGGAGGACCTTTAGT 59.369 52.381 0.00 0.00 45.36 2.24
3819 7875 2.355209 CCAAGCAGGAGGACCTTTAGTC 60.355 54.545 0.00 0.00 45.36 2.59
3827 7883 3.545724 GACCTTTAGTCCCGGTTGG 57.454 57.895 0.00 0.00 39.84 3.77
3828 7884 0.689055 GACCTTTAGTCCCGGTTGGT 59.311 55.000 0.00 0.00 39.84 3.67
3829 7885 1.901833 GACCTTTAGTCCCGGTTGGTA 59.098 52.381 0.00 0.00 39.84 3.25
3830 7886 2.302733 GACCTTTAGTCCCGGTTGGTAA 59.697 50.000 0.00 0.00 39.84 2.85
3831 7887 2.038952 ACCTTTAGTCCCGGTTGGTAAC 59.961 50.000 0.00 0.00 34.77 2.50
3832 7888 6.315534 GACCTTTAGTCCCGGTTGGTAACA 62.316 50.000 0.00 0.00 42.49 2.41
3843 7899 4.384599 GGTAACACCAACCGGGAC 57.615 61.111 6.32 0.00 38.42 4.46
3844 7900 1.302752 GGTAACACCAACCGGGACC 60.303 63.158 6.32 0.00 38.42 4.46
3845 7901 1.451072 GTAACACCAACCGGGACCA 59.549 57.895 6.32 0.00 41.15 4.02
3846 7902 0.179023 GTAACACCAACCGGGACCAA 60.179 55.000 6.32 0.00 41.15 3.67
3847 7903 0.549950 TAACACCAACCGGGACCAAA 59.450 50.000 6.32 0.00 41.15 3.28
3848 7904 0.324460 AACACCAACCGGGACCAAAA 60.324 50.000 6.32 0.00 41.15 2.44
3849 7905 0.753848 ACACCAACCGGGACCAAAAG 60.754 55.000 6.32 0.00 41.15 2.27
3850 7906 0.466555 CACCAACCGGGACCAAAAGA 60.467 55.000 6.32 0.00 41.15 2.52
3851 7907 0.259356 ACCAACCGGGACCAAAAGAA 59.741 50.000 6.32 0.00 41.15 2.52
3852 7908 1.342175 ACCAACCGGGACCAAAAGAAA 60.342 47.619 6.32 0.00 41.15 2.52
3853 7909 1.339929 CCAACCGGGACCAAAAGAAAG 59.660 52.381 6.32 0.00 40.01 2.62
3854 7910 2.028876 CAACCGGGACCAAAAGAAAGT 58.971 47.619 6.32 0.00 0.00 2.66
3855 7911 1.977056 ACCGGGACCAAAAGAAAGTC 58.023 50.000 6.32 0.00 0.00 3.01
3856 7912 1.213430 ACCGGGACCAAAAGAAAGTCA 59.787 47.619 6.32 0.00 31.99 3.41
3857 7913 1.607148 CCGGGACCAAAAGAAAGTCAC 59.393 52.381 0.00 0.00 31.99 3.67
3859 7915 1.001706 GGGACCAAAAGAAAGTCACGC 60.002 52.381 0.00 0.00 31.99 5.34
3860 7916 1.333791 GGACCAAAAGAAAGTCACGCG 60.334 52.381 3.53 3.53 31.99 6.01
3861 7917 1.329599 GACCAAAAGAAAGTCACGCGT 59.670 47.619 5.58 5.58 0.00 6.01
3862 7918 1.329599 ACCAAAAGAAAGTCACGCGTC 59.670 47.619 9.86 0.00 0.00 5.19
3863 7919 1.329292 CCAAAAGAAAGTCACGCGTCA 59.671 47.619 9.86 0.00 0.00 4.35
3864 7920 2.599848 CCAAAAGAAAGTCACGCGTCAG 60.600 50.000 9.86 0.00 0.00 3.51
3865 7921 0.582005 AAAGAAAGTCACGCGTCAGC 59.418 50.000 9.86 1.82 40.74 4.26
3866 7922 0.529773 AAGAAAGTCACGCGTCAGCA 60.530 50.000 9.86 0.00 45.49 4.41
3867 7923 0.941463 AGAAAGTCACGCGTCAGCAG 60.941 55.000 9.86 0.00 45.49 4.24
3868 7924 2.486036 GAAAGTCACGCGTCAGCAGC 62.486 60.000 9.86 0.00 45.49 5.25
3869 7925 2.978452 AAAGTCACGCGTCAGCAGCT 62.978 55.000 9.86 0.00 45.49 4.24
3870 7926 3.474034 GTCACGCGTCAGCAGCTC 61.474 66.667 9.86 0.00 45.49 4.09
3882 7938 2.807045 CAGCTCGCTGTCGGTGTC 60.807 66.667 10.65 0.00 39.10 3.67
3883 7939 3.295273 AGCTCGCTGTCGGTGTCA 61.295 61.111 0.00 0.00 36.13 3.58
3884 7940 2.355837 GCTCGCTGTCGGTGTCAA 60.356 61.111 0.00 0.00 36.13 3.18
3885 7941 1.954146 GCTCGCTGTCGGTGTCAAA 60.954 57.895 0.00 0.00 36.13 2.69
3886 7942 1.495584 GCTCGCTGTCGGTGTCAAAA 61.496 55.000 0.00 0.00 36.13 2.44
3887 7943 0.232303 CTCGCTGTCGGTGTCAAAAC 59.768 55.000 0.00 0.00 36.13 2.43
3888 7944 1.155424 TCGCTGTCGGTGTCAAAACC 61.155 55.000 0.00 0.00 36.82 3.27
3894 7950 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
3895 7951 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
3896 7952 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
3897 7953 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
3898 7954 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
3899 7955 0.672401 GTCAAAACCGGCGGATCTCA 60.672 55.000 35.78 10.41 0.00 3.27
3900 7956 0.391130 TCAAAACCGGCGGATCTCAG 60.391 55.000 35.78 16.46 0.00 3.35
3901 7957 1.078426 AAAACCGGCGGATCTCAGG 60.078 57.895 35.78 2.92 0.00 3.86
3902 7958 1.838073 AAAACCGGCGGATCTCAGGT 61.838 55.000 35.78 3.72 36.66 4.00
3903 7959 0.974010 AAACCGGCGGATCTCAGGTA 60.974 55.000 35.78 0.00 34.35 3.08
3904 7960 1.392710 AACCGGCGGATCTCAGGTAG 61.393 60.000 35.78 0.55 34.35 3.18
3905 7961 2.565645 CCGGCGGATCTCAGGTAGG 61.566 68.421 24.41 0.00 0.00 3.18
3906 7962 2.565645 CGGCGGATCTCAGGTAGGG 61.566 68.421 0.00 0.00 0.00 3.53
3907 7963 2.210711 GGCGGATCTCAGGTAGGGG 61.211 68.421 0.00 0.00 0.00 4.79
3908 7964 2.210711 GCGGATCTCAGGTAGGGGG 61.211 68.421 0.00 0.00 0.00 5.40
3909 7965 1.233369 CGGATCTCAGGTAGGGGGT 59.767 63.158 0.00 0.00 0.00 4.95
3910 7966 0.828343 CGGATCTCAGGTAGGGGGTC 60.828 65.000 0.00 0.00 0.00 4.46
3911 7967 0.264955 GGATCTCAGGTAGGGGGTCA 59.735 60.000 0.00 0.00 0.00 4.02
3912 7968 1.415200 GATCTCAGGTAGGGGGTCAC 58.585 60.000 0.00 0.00 0.00 3.67
3913 7969 0.397254 ATCTCAGGTAGGGGGTCACG 60.397 60.000 0.00 0.00 0.00 4.35
3914 7970 1.000019 CTCAGGTAGGGGGTCACGA 60.000 63.158 0.00 0.00 0.00 4.35
3915 7971 0.613853 CTCAGGTAGGGGGTCACGAA 60.614 60.000 0.00 0.00 0.00 3.85
3916 7972 0.901580 TCAGGTAGGGGGTCACGAAC 60.902 60.000 0.00 0.00 0.00 3.95
3917 7973 0.903454 CAGGTAGGGGGTCACGAACT 60.903 60.000 0.00 0.00 0.00 3.01
3918 7974 0.903454 AGGTAGGGGGTCACGAACTG 60.903 60.000 0.00 0.00 0.00 3.16
3919 7975 1.190178 GGTAGGGGGTCACGAACTGT 61.190 60.000 0.00 0.00 0.00 3.55
3929 7985 1.060713 CACGAACTGTGCGTCTAAGG 58.939 55.000 11.63 0.00 42.70 2.69
3930 7986 0.956633 ACGAACTGTGCGTCTAAGGA 59.043 50.000 8.28 0.00 37.42 3.36
3931 7987 1.544691 ACGAACTGTGCGTCTAAGGAT 59.455 47.619 8.28 0.00 37.42 3.24
3932 7988 2.186076 CGAACTGTGCGTCTAAGGATC 58.814 52.381 0.00 0.00 0.00 3.36
3933 7989 2.186076 GAACTGTGCGTCTAAGGATCG 58.814 52.381 0.00 0.00 0.00 3.69
3934 7990 1.460504 ACTGTGCGTCTAAGGATCGA 58.539 50.000 0.00 0.00 0.00 3.59
3935 7991 1.816835 ACTGTGCGTCTAAGGATCGAA 59.183 47.619 0.00 0.00 0.00 3.71
3936 7992 2.159366 ACTGTGCGTCTAAGGATCGAAG 60.159 50.000 0.00 0.00 0.00 3.79
3937 7993 1.134367 TGTGCGTCTAAGGATCGAAGG 59.866 52.381 0.00 0.00 0.00 3.46
3938 7994 1.134560 GTGCGTCTAAGGATCGAAGGT 59.865 52.381 0.00 0.00 0.00 3.50
3939 7995 2.357009 GTGCGTCTAAGGATCGAAGGTA 59.643 50.000 0.00 0.00 0.00 3.08
3940 7996 3.018856 TGCGTCTAAGGATCGAAGGTAA 58.981 45.455 0.00 0.00 0.00 2.85
3941 7997 3.181493 TGCGTCTAAGGATCGAAGGTAAC 60.181 47.826 0.00 0.00 0.00 2.50
3942 7998 3.181493 GCGTCTAAGGATCGAAGGTAACA 60.181 47.826 0.00 0.00 41.41 2.41
3943 7999 4.599047 CGTCTAAGGATCGAAGGTAACAG 58.401 47.826 0.00 0.00 41.41 3.16
3944 8000 4.497674 CGTCTAAGGATCGAAGGTAACAGG 60.498 50.000 0.00 0.00 41.41 4.00
3945 8001 4.643784 GTCTAAGGATCGAAGGTAACAGGA 59.356 45.833 0.00 0.00 41.41 3.86
3946 8002 4.888239 TCTAAGGATCGAAGGTAACAGGAG 59.112 45.833 0.00 0.00 41.41 3.69
3947 8003 2.389715 AGGATCGAAGGTAACAGGAGG 58.610 52.381 0.00 0.00 41.41 4.30
3948 8004 1.202545 GGATCGAAGGTAACAGGAGGC 60.203 57.143 0.00 0.00 41.41 4.70
3949 8005 1.480954 GATCGAAGGTAACAGGAGGCA 59.519 52.381 0.00 0.00 41.41 4.75
3950 8006 0.895530 TCGAAGGTAACAGGAGGCAG 59.104 55.000 0.00 0.00 41.41 4.85
3951 8007 0.108138 CGAAGGTAACAGGAGGCAGG 60.108 60.000 0.00 0.00 41.41 4.85
3952 8008 0.253327 GAAGGTAACAGGAGGCAGGG 59.747 60.000 0.00 0.00 41.41 4.45
3953 8009 0.178873 AAGGTAACAGGAGGCAGGGA 60.179 55.000 0.00 0.00 41.41 4.20
3954 8010 0.910088 AGGTAACAGGAGGCAGGGAC 60.910 60.000 0.00 0.00 41.41 4.46
3955 8011 1.218316 GTAACAGGAGGCAGGGACG 59.782 63.158 0.00 0.00 0.00 4.79
3956 8012 2.656069 TAACAGGAGGCAGGGACGC 61.656 63.158 0.00 0.00 0.00 5.19
3958 8014 4.463879 CAGGAGGCAGGGACGCAG 62.464 72.222 0.00 0.00 0.00 5.18
3970 8026 4.792087 ACGCAGTGTTTACCCAGG 57.208 55.556 0.00 0.00 42.51 4.45
3971 8027 1.834301 ACGCAGTGTTTACCCAGGT 59.166 52.632 0.00 0.00 42.51 4.00
3972 8028 0.181824 ACGCAGTGTTTACCCAGGTT 59.818 50.000 0.00 0.00 42.51 3.50
3973 8029 0.872388 CGCAGTGTTTACCCAGGTTC 59.128 55.000 0.00 0.00 0.00 3.62
3974 8030 0.872388 GCAGTGTTTACCCAGGTTCG 59.128 55.000 0.00 0.00 0.00 3.95
3975 8031 1.519408 CAGTGTTTACCCAGGTTCGG 58.481 55.000 0.00 0.00 0.00 4.30
3983 8039 3.330720 CCAGGTTCGGGCCCTCTT 61.331 66.667 22.43 3.59 0.00 2.85
3984 8040 2.045926 CAGGTTCGGGCCCTCTTG 60.046 66.667 22.43 12.77 0.00 3.02
3985 8041 2.203938 AGGTTCGGGCCCTCTTGA 60.204 61.111 22.43 6.61 0.00 3.02
3986 8042 1.616628 AGGTTCGGGCCCTCTTGAT 60.617 57.895 22.43 0.00 0.00 2.57
3987 8043 1.452108 GGTTCGGGCCCTCTTGATG 60.452 63.158 22.43 1.43 0.00 3.07
3988 8044 1.452108 GTTCGGGCCCTCTTGATGG 60.452 63.158 22.43 0.54 0.00 3.51
3989 8045 1.615124 TTCGGGCCCTCTTGATGGA 60.615 57.895 22.43 3.53 0.00 3.41
3990 8046 1.626356 TTCGGGCCCTCTTGATGGAG 61.626 60.000 22.43 0.00 0.00 3.86
3999 8055 4.625607 CCTCTTGATGGAGGTAATACCC 57.374 50.000 5.71 0.00 45.65 3.69
4000 8056 4.235372 CCTCTTGATGGAGGTAATACCCT 58.765 47.826 5.71 0.00 45.65 4.34
4001 8057 5.403512 CCTCTTGATGGAGGTAATACCCTA 58.596 45.833 5.71 0.00 45.65 3.53
4002 8058 5.246429 CCTCTTGATGGAGGTAATACCCTAC 59.754 48.000 5.71 0.00 45.65 3.18
4003 8059 6.039415 TCTTGATGGAGGTAATACCCTACT 57.961 41.667 5.71 0.00 39.75 2.57
4004 8060 6.449956 TCTTGATGGAGGTAATACCCTACTT 58.550 40.000 5.71 0.00 39.75 2.24
4005 8061 6.553852 TCTTGATGGAGGTAATACCCTACTTC 59.446 42.308 5.71 5.43 39.75 3.01
4006 8062 5.152934 TGATGGAGGTAATACCCTACTTCC 58.847 45.833 5.71 6.77 44.47 3.46
4007 8063 4.913154 TGGAGGTAATACCCTACTTCCT 57.087 45.455 13.63 0.00 44.50 3.36
4008 8064 4.553678 TGGAGGTAATACCCTACTTCCTG 58.446 47.826 13.63 0.00 44.50 3.86
4009 8065 3.324268 GGAGGTAATACCCTACTTCCTGC 59.676 52.174 5.71 0.00 42.18 4.85
4010 8066 4.224762 GAGGTAATACCCTACTTCCTGCT 58.775 47.826 5.71 0.00 39.75 4.24
4011 8067 4.632292 AGGTAATACCCTACTTCCTGCTT 58.368 43.478 5.71 0.00 39.75 3.91
4012 8068 4.409247 AGGTAATACCCTACTTCCTGCTTG 59.591 45.833 5.71 0.00 39.75 4.01
4013 8069 4.407945 GGTAATACCCTACTTCCTGCTTGA 59.592 45.833 0.00 0.00 30.04 3.02
4014 8070 5.071923 GGTAATACCCTACTTCCTGCTTGAT 59.928 44.000 0.00 0.00 30.04 2.57
4015 8071 5.717119 AATACCCTACTTCCTGCTTGATT 57.283 39.130 0.00 0.00 0.00 2.57
4016 8072 3.356529 ACCCTACTTCCTGCTTGATTG 57.643 47.619 0.00 0.00 0.00 2.67
4017 8073 2.912956 ACCCTACTTCCTGCTTGATTGA 59.087 45.455 0.00 0.00 0.00 2.57
4018 8074 3.274288 CCCTACTTCCTGCTTGATTGAC 58.726 50.000 0.00 0.00 0.00 3.18
4019 8075 3.054802 CCCTACTTCCTGCTTGATTGACT 60.055 47.826 0.00 0.00 0.00 3.41
4020 8076 4.566488 CCCTACTTCCTGCTTGATTGACTT 60.566 45.833 0.00 0.00 0.00 3.01
4021 8077 5.006386 CCTACTTCCTGCTTGATTGACTTT 58.994 41.667 0.00 0.00 0.00 2.66
4022 8078 4.843220 ACTTCCTGCTTGATTGACTTTG 57.157 40.909 0.00 0.00 0.00 2.77
4023 8079 4.464008 ACTTCCTGCTTGATTGACTTTGA 58.536 39.130 0.00 0.00 0.00 2.69
4024 8080 5.075493 ACTTCCTGCTTGATTGACTTTGAT 58.925 37.500 0.00 0.00 0.00 2.57
4025 8081 5.048224 ACTTCCTGCTTGATTGACTTTGATG 60.048 40.000 0.00 0.00 0.00 3.07
4026 8082 4.654915 TCCTGCTTGATTGACTTTGATGA 58.345 39.130 0.00 0.00 0.00 2.92
4027 8083 4.698780 TCCTGCTTGATTGACTTTGATGAG 59.301 41.667 0.00 0.00 0.00 2.90
4028 8084 4.458295 CCTGCTTGATTGACTTTGATGAGT 59.542 41.667 0.00 0.00 0.00 3.41
4029 8085 5.645067 CCTGCTTGATTGACTTTGATGAGTA 59.355 40.000 0.00 0.00 0.00 2.59
4030 8086 6.402983 CCTGCTTGATTGACTTTGATGAGTAC 60.403 42.308 0.00 0.00 0.00 2.73
4031 8087 5.997129 TGCTTGATTGACTTTGATGAGTACA 59.003 36.000 0.00 0.00 0.00 2.90
4032 8088 6.148315 TGCTTGATTGACTTTGATGAGTACAG 59.852 38.462 0.00 0.00 0.00 2.74
4033 8089 6.369890 GCTTGATTGACTTTGATGAGTACAGA 59.630 38.462 0.00 0.00 0.00 3.41
4034 8090 7.412781 GCTTGATTGACTTTGATGAGTACAGAG 60.413 40.741 0.00 0.00 0.00 3.35
4035 8091 6.401394 TGATTGACTTTGATGAGTACAGAGG 58.599 40.000 0.00 0.00 0.00 3.69
4036 8092 5.808366 TTGACTTTGATGAGTACAGAGGT 57.192 39.130 0.00 0.00 0.00 3.85
4037 8093 5.808366 TGACTTTGATGAGTACAGAGGTT 57.192 39.130 0.00 0.00 0.00 3.50
4038 8094 6.911250 TGACTTTGATGAGTACAGAGGTTA 57.089 37.500 0.00 0.00 0.00 2.85
4039 8095 6.688578 TGACTTTGATGAGTACAGAGGTTAC 58.311 40.000 0.00 0.00 0.00 2.50
4040 8096 6.266786 TGACTTTGATGAGTACAGAGGTTACA 59.733 38.462 0.00 0.00 0.00 2.41
4041 8097 7.062749 ACTTTGATGAGTACAGAGGTTACAA 57.937 36.000 0.00 0.00 0.00 2.41
4042 8098 7.155328 ACTTTGATGAGTACAGAGGTTACAAG 58.845 38.462 0.00 0.00 0.00 3.16
4043 8099 6.911250 TTGATGAGTACAGAGGTTACAAGA 57.089 37.500 0.00 0.00 0.00 3.02
4044 8100 6.516739 TGATGAGTACAGAGGTTACAAGAG 57.483 41.667 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.594134 AGATCTCTACAACAACAGCAGC 58.406 45.455 0.00 0.00 0.00 5.25
1 2 6.201226 TCTAGATCTCTACAACAACAGCAG 57.799 41.667 0.00 0.00 0.00 4.24
2 3 6.567959 CATCTAGATCTCTACAACAACAGCA 58.432 40.000 1.03 0.00 0.00 4.41
3 4 5.461737 GCATCTAGATCTCTACAACAACAGC 59.538 44.000 1.03 0.00 0.00 4.40
4 5 6.804677 AGCATCTAGATCTCTACAACAACAG 58.195 40.000 1.03 0.00 0.00 3.16
5 6 6.782082 AGCATCTAGATCTCTACAACAACA 57.218 37.500 1.03 0.00 0.00 3.33
6 7 9.587772 TTTAAGCATCTAGATCTCTACAACAAC 57.412 33.333 1.03 0.00 0.00 3.32
89 95 4.101430 TCAAAAAGGCAGCCTGAAAAGAAT 59.899 37.500 17.05 0.00 32.13 2.40
101 108 5.639082 ACAAAGTCAAAACTCAAAAAGGCAG 59.361 36.000 0.00 0.00 33.48 4.85
141 148 8.632906 TGATTGGGCACAAAATATTTCATTTT 57.367 26.923 4.97 0.00 40.55 1.82
144 151 8.047911 TGAATGATTGGGCACAAAATATTTCAT 58.952 29.630 4.97 6.42 40.55 2.57
159 171 9.656040 TTATTGTTGAATCTTTGAATGATTGGG 57.344 29.630 10.54 0.00 34.67 4.12
184 196 6.560253 ATGCTACAAAGTCAAAACTCGATT 57.440 33.333 0.00 0.00 33.48 3.34
185 197 7.667043 TTATGCTACAAAGTCAAAACTCGAT 57.333 32.000 0.00 0.00 33.48 3.59
240 255 8.861033 TTCACATAATTTATGATGCTCAAAGC 57.139 30.769 20.54 0.00 39.51 3.51
340 357 9.045223 GGTTAGCTTTTGAGTTGATTTCATTTT 57.955 29.630 0.00 0.00 0.00 1.82
341 358 7.657354 GGGTTAGCTTTTGAGTTGATTTCATTT 59.343 33.333 0.00 0.00 0.00 2.32
342 359 7.015584 AGGGTTAGCTTTTGAGTTGATTTCATT 59.984 33.333 0.00 0.00 0.00 2.57
343 360 6.494835 AGGGTTAGCTTTTGAGTTGATTTCAT 59.505 34.615 0.00 0.00 0.00 2.57
344 361 5.833131 AGGGTTAGCTTTTGAGTTGATTTCA 59.167 36.000 0.00 0.00 0.00 2.69
345 362 6.332735 AGGGTTAGCTTTTGAGTTGATTTC 57.667 37.500 0.00 0.00 0.00 2.17
346 363 5.048713 CGAGGGTTAGCTTTTGAGTTGATTT 60.049 40.000 0.00 0.00 0.00 2.17
347 364 4.455877 CGAGGGTTAGCTTTTGAGTTGATT 59.544 41.667 0.00 0.00 0.00 2.57
348 365 4.003648 CGAGGGTTAGCTTTTGAGTTGAT 58.996 43.478 0.00 0.00 0.00 2.57
349 366 3.181458 ACGAGGGTTAGCTTTTGAGTTGA 60.181 43.478 0.00 0.00 0.00 3.18
350 367 3.139077 ACGAGGGTTAGCTTTTGAGTTG 58.861 45.455 0.00 0.00 0.00 3.16
351 368 3.487120 ACGAGGGTTAGCTTTTGAGTT 57.513 42.857 0.00 0.00 0.00 3.01
352 369 3.139077 CAACGAGGGTTAGCTTTTGAGT 58.861 45.455 0.00 0.00 33.72 3.41
353 370 3.399330 TCAACGAGGGTTAGCTTTTGAG 58.601 45.455 0.00 0.00 33.72 3.02
354 371 3.478857 TCAACGAGGGTTAGCTTTTGA 57.521 42.857 0.00 0.00 33.72 2.69
355 372 4.766404 AATCAACGAGGGTTAGCTTTTG 57.234 40.909 0.00 0.00 33.72 2.44
356 373 5.784578 AAAATCAACGAGGGTTAGCTTTT 57.215 34.783 0.00 0.00 33.72 2.27
357 374 5.784578 AAAAATCAACGAGGGTTAGCTTT 57.215 34.783 0.00 0.00 33.72 3.51
377 394 5.006358 GCTCGCGGAGTTTCTCATATAAAAA 59.994 40.000 6.13 0.00 31.08 1.94
378 395 4.506654 GCTCGCGGAGTTTCTCATATAAAA 59.493 41.667 6.13 0.00 31.08 1.52
379 396 4.049186 GCTCGCGGAGTTTCTCATATAAA 58.951 43.478 6.13 0.00 31.08 1.40
380 397 3.067601 TGCTCGCGGAGTTTCTCATATAA 59.932 43.478 6.13 0.00 31.08 0.98
381 398 2.621526 TGCTCGCGGAGTTTCTCATATA 59.378 45.455 6.13 0.00 31.08 0.86
382 399 1.409064 TGCTCGCGGAGTTTCTCATAT 59.591 47.619 6.13 0.00 31.08 1.78
383 400 0.815095 TGCTCGCGGAGTTTCTCATA 59.185 50.000 6.13 0.00 31.08 2.15
384 401 0.176680 ATGCTCGCGGAGTTTCTCAT 59.823 50.000 6.13 0.00 31.08 2.90
385 402 0.458543 GATGCTCGCGGAGTTTCTCA 60.459 55.000 6.13 0.00 31.08 3.27
386 403 0.458543 TGATGCTCGCGGAGTTTCTC 60.459 55.000 6.13 0.00 31.39 2.87
387 404 0.176680 ATGATGCTCGCGGAGTTTCT 59.823 50.000 6.13 0.00 31.39 2.52
388 405 0.302890 CATGATGCTCGCGGAGTTTC 59.697 55.000 6.13 4.88 31.39 2.78
389 406 0.391661 ACATGATGCTCGCGGAGTTT 60.392 50.000 6.13 0.00 31.39 2.66
390 407 1.086067 CACATGATGCTCGCGGAGTT 61.086 55.000 6.13 0.00 31.39 3.01
391 408 1.520120 CACATGATGCTCGCGGAGT 60.520 57.895 6.13 0.00 31.39 3.85
392 409 1.485838 GACACATGATGCTCGCGGAG 61.486 60.000 6.13 3.47 0.00 4.63
393 410 1.519234 GACACATGATGCTCGCGGA 60.519 57.895 6.13 0.00 0.00 5.54
394 411 1.520120 AGACACATGATGCTCGCGG 60.520 57.895 6.13 0.00 0.00 6.46
395 412 0.803380 TCAGACACATGATGCTCGCG 60.803 55.000 0.00 0.00 0.00 5.87
396 413 0.928922 CTCAGACACATGATGCTCGC 59.071 55.000 0.00 0.00 0.00 5.03
397 414 2.191802 GACTCAGACACATGATGCTCG 58.808 52.381 0.00 0.00 0.00 5.03
398 415 2.191802 CGACTCAGACACATGATGCTC 58.808 52.381 0.00 0.00 0.00 4.26
399 416 1.134877 CCGACTCAGACACATGATGCT 60.135 52.381 0.00 0.00 0.00 3.79
400 417 1.284657 CCGACTCAGACACATGATGC 58.715 55.000 0.00 0.00 0.00 3.91
401 418 1.478105 TCCCGACTCAGACACATGATG 59.522 52.381 0.00 0.00 0.00 3.07
402 419 1.478510 GTCCCGACTCAGACACATGAT 59.521 52.381 0.00 0.00 33.08 2.45
403 420 0.888619 GTCCCGACTCAGACACATGA 59.111 55.000 0.00 0.00 33.08 3.07
404 421 0.891373 AGTCCCGACTCAGACACATG 59.109 55.000 0.00 0.00 36.92 3.21
405 422 3.365536 AGTCCCGACTCAGACACAT 57.634 52.632 0.00 0.00 36.92 3.21
406 423 4.923068 AGTCCCGACTCAGACACA 57.077 55.556 0.00 0.00 36.92 3.72
416 433 0.596577 CACTCAAGTTCGAGTCCCGA 59.403 55.000 5.36 0.00 44.49 5.14
417 434 0.388649 CCACTCAAGTTCGAGTCCCG 60.389 60.000 5.36 0.00 44.49 5.14
418 435 0.037232 CCCACTCAAGTTCGAGTCCC 60.037 60.000 5.36 0.00 44.49 4.46
419 436 0.670854 GCCCACTCAAGTTCGAGTCC 60.671 60.000 5.36 0.00 44.49 3.85
420 437 0.318762 AGCCCACTCAAGTTCGAGTC 59.681 55.000 5.36 0.00 44.49 3.36
422 439 0.318441 TCAGCCCACTCAAGTTCGAG 59.682 55.000 0.00 0.00 39.05 4.04
423 440 0.033504 GTCAGCCCACTCAAGTTCGA 59.966 55.000 0.00 0.00 0.00 3.71
424 441 0.249868 TGTCAGCCCACTCAAGTTCG 60.250 55.000 0.00 0.00 0.00 3.95
425 442 1.517242 CTGTCAGCCCACTCAAGTTC 58.483 55.000 0.00 0.00 0.00 3.01
426 443 0.536006 GCTGTCAGCCCACTCAAGTT 60.536 55.000 14.27 0.00 34.48 2.66
427 444 1.072159 GCTGTCAGCCCACTCAAGT 59.928 57.895 14.27 0.00 34.48 3.16
428 445 0.610174 TAGCTGTCAGCCCACTCAAG 59.390 55.000 21.32 0.00 43.77 3.02
429 446 0.321671 GTAGCTGTCAGCCCACTCAA 59.678 55.000 21.32 0.00 43.77 3.02
430 447 1.544825 GGTAGCTGTCAGCCCACTCA 61.545 60.000 21.32 0.00 43.77 3.41
431 448 1.219393 GGTAGCTGTCAGCCCACTC 59.781 63.158 21.32 9.74 43.77 3.51
432 449 2.294078 GGGTAGCTGTCAGCCCACT 61.294 63.158 21.32 5.37 43.77 4.00
433 450 2.269241 GGGTAGCTGTCAGCCCAC 59.731 66.667 21.32 18.04 43.77 4.61
435 452 2.586792 CTGGGTAGCTGTCAGCCC 59.413 66.667 21.32 15.55 43.77 5.19
436 453 2.124942 GCTGGGTAGCTGTCAGCC 60.125 66.667 21.32 10.55 46.57 4.85
453 470 2.113139 AACCCGTTGGCTGGACAG 59.887 61.111 0.00 0.00 33.59 3.51
454 471 2.063015 ATCAACCCGTTGGCTGGACA 62.063 55.000 7.68 0.00 40.78 4.02
455 472 1.303317 ATCAACCCGTTGGCTGGAC 60.303 57.895 7.68 0.00 40.78 4.02
456 473 1.303236 CATCAACCCGTTGGCTGGA 60.303 57.895 7.68 0.00 40.78 3.86
457 474 2.993471 GCATCAACCCGTTGGCTGG 61.993 63.158 7.68 0.00 40.78 4.85
458 475 2.568090 GCATCAACCCGTTGGCTG 59.432 61.111 7.68 7.09 40.78 4.85
459 476 2.676471 GGCATCAACCCGTTGGCT 60.676 61.111 7.68 0.00 40.78 4.75
460 477 3.758931 GGGCATCAACCCGTTGGC 61.759 66.667 7.68 4.34 40.98 4.52
467 484 2.124695 GAGGACGGGGCATCAACC 60.125 66.667 0.00 0.00 0.00 3.77
468 485 2.511600 CGAGGACGGGGCATCAAC 60.512 66.667 0.00 0.00 35.72 3.18
469 486 4.467084 GCGAGGACGGGGCATCAA 62.467 66.667 0.00 0.00 40.15 2.57
471 488 4.162690 AAGCGAGGACGGGGCATC 62.163 66.667 0.00 0.00 40.15 3.91
472 489 4.473520 CAAGCGAGGACGGGGCAT 62.474 66.667 0.00 0.00 40.15 4.40
474 491 1.741327 TATACAAGCGAGGACGGGGC 61.741 60.000 0.00 0.00 40.15 5.80
475 492 0.966920 ATATACAAGCGAGGACGGGG 59.033 55.000 0.00 0.00 40.15 5.73
476 493 3.928727 TTATATACAAGCGAGGACGGG 57.071 47.619 0.00 0.00 40.15 5.28
477 494 5.466819 TGATTTATATACAAGCGAGGACGG 58.533 41.667 0.00 0.00 40.15 4.79
478 495 6.379386 TCTGATTTATATACAAGCGAGGACG 58.621 40.000 0.00 0.00 42.93 4.79
479 496 8.651588 CATTCTGATTTATATACAAGCGAGGAC 58.348 37.037 0.00 0.00 0.00 3.85
480 497 7.331934 GCATTCTGATTTATATACAAGCGAGGA 59.668 37.037 0.00 0.00 0.00 3.71
481 498 7.332926 AGCATTCTGATTTATATACAAGCGAGG 59.667 37.037 0.00 0.00 0.00 4.63
482 499 8.249327 AGCATTCTGATTTATATACAAGCGAG 57.751 34.615 0.00 0.00 0.00 5.03
483 500 9.358872 CTAGCATTCTGATTTATATACAAGCGA 57.641 33.333 0.00 0.00 0.00 4.93
484 501 8.113062 GCTAGCATTCTGATTTATATACAAGCG 58.887 37.037 10.63 0.00 0.00 4.68
485 502 8.939929 TGCTAGCATTCTGATTTATATACAAGC 58.060 33.333 14.93 0.00 0.00 4.01
506 523 5.286320 CGTACGGCAGATATAACAATGCTAG 59.714 44.000 7.57 0.00 38.71 3.42
525 542 3.836949 ACACTACCATACAAACCGTACG 58.163 45.455 8.69 8.69 31.27 3.67
530 1207 9.991906 ATACACATATACACTACCATACAAACC 57.008 33.333 0.00 0.00 0.00 3.27
839 4343 1.028905 ATGTGAACGTGGTGGTTTGG 58.971 50.000 0.00 0.00 0.00 3.28
855 4359 2.545526 CAGTTGACGTGAGCTCAAATGT 59.454 45.455 20.19 17.17 39.70 2.71
933 4438 0.811616 GCTGTACTGATTCCCGGCAG 60.812 60.000 3.61 0.00 38.10 4.85
977 4482 0.108329 GTGGCGCCTTAAGTAGAGCA 60.108 55.000 29.70 0.00 0.00 4.26
978 4483 0.810426 GGTGGCGCCTTAAGTAGAGC 60.810 60.000 29.70 10.52 0.00 4.09
979 4484 0.527817 CGGTGGCGCCTTAAGTAGAG 60.528 60.000 29.70 4.74 34.25 2.43
998 4503 0.036858 GAGGACAGGAGTGGTTGCTC 60.037 60.000 0.00 0.00 34.89 4.26
1031 4536 0.178861 ACTTGGGAGAGGGGTGTGAT 60.179 55.000 0.00 0.00 0.00 3.06
1055 4565 9.732130 AGCAGGGAGATTATTAGATATTGAAAC 57.268 33.333 0.00 0.00 0.00 2.78
1065 4575 4.322349 CGGAAGGAGCAGGGAGATTATTAG 60.322 50.000 0.00 0.00 0.00 1.73
1093 4629 1.300233 GGAGGACATGGCGATCGAC 60.300 63.158 21.57 18.80 0.00 4.20
1159 4695 1.067846 TCGGTGAAGGACGTGATGAAG 60.068 52.381 0.00 0.00 0.00 3.02
1378 4923 0.941463 GATGGAGAGCGCGTACATGG 60.941 60.000 14.51 0.00 0.00 3.66
1388 4933 0.108424 AGCAACACGAGATGGAGAGC 60.108 55.000 0.00 0.00 0.00 4.09
1389 4934 1.203287 TGAGCAACACGAGATGGAGAG 59.797 52.381 0.00 0.00 0.00 3.20
1390 4935 1.256812 TGAGCAACACGAGATGGAGA 58.743 50.000 0.00 0.00 0.00 3.71
1416 4961 8.796278 CATAGTACTACGAAACTAGCAGAAAAC 58.204 37.037 4.31 0.00 32.01 2.43
1421 4973 5.681982 GCACATAGTACTACGAAACTAGCAG 59.318 44.000 4.31 0.00 32.01 4.24
1438 4990 2.288213 ACCACGGATCATACGCACATAG 60.288 50.000 0.00 0.00 34.00 2.23
1439 4991 1.684450 ACCACGGATCATACGCACATA 59.316 47.619 0.00 0.00 34.00 2.29
1446 4998 2.533266 ATCAGCACCACGGATCATAC 57.467 50.000 0.00 0.00 0.00 2.39
1584 5136 4.504916 CGCTGTCTCCTCGGCAGG 62.505 72.222 0.00 0.00 42.01 4.85
1591 5143 1.915769 AAAGAGGCCGCTGTCTCCT 60.916 57.895 10.77 0.00 44.63 3.69
1742 5342 2.578163 TACAGCCTCGGTGCATGCTC 62.578 60.000 20.33 15.68 34.04 4.26
1800 5400 5.189928 ACGACTGTATTGTCAGAGAGAGAT 58.810 41.667 0.00 0.00 38.63 2.75
1802 5402 4.955925 ACGACTGTATTGTCAGAGAGAG 57.044 45.455 0.00 0.00 38.63 3.20
1867 5468 4.142469 ACTTCTACCACTTGTTGTTGTTGC 60.142 41.667 0.00 0.00 0.00 4.17
1948 5549 0.970937 TCTGCCCGTACTTCCTCCAG 60.971 60.000 0.00 0.00 0.00 3.86
2155 5756 2.203056 TTGGCATGATCCTCCGCG 60.203 61.111 0.00 0.00 0.00 6.46
2200 5801 3.307242 CGAAAGTGACGGATGAATTCTCC 59.693 47.826 7.05 9.92 0.00 3.71
2241 5842 2.116983 ATCACTGAGCTGCAACCCGT 62.117 55.000 1.02 0.00 0.00 5.28
2242 5843 1.376424 ATCACTGAGCTGCAACCCG 60.376 57.895 1.02 0.00 0.00 5.28
2243 5844 1.310933 CCATCACTGAGCTGCAACCC 61.311 60.000 1.02 0.00 0.00 4.11
2244 5845 1.930908 GCCATCACTGAGCTGCAACC 61.931 60.000 1.02 0.00 0.00 3.77
2245 5846 1.505353 GCCATCACTGAGCTGCAAC 59.495 57.895 1.02 0.00 0.00 4.17
2246 5847 2.036571 CGCCATCACTGAGCTGCAA 61.037 57.895 1.02 0.00 0.00 4.08
2247 5848 2.435410 CGCCATCACTGAGCTGCA 60.435 61.111 1.02 0.00 0.00 4.41
2248 5849 3.873883 GCGCCATCACTGAGCTGC 61.874 66.667 0.00 0.00 0.00 5.25
2249 5850 2.125229 AGCGCCATCACTGAGCTG 60.125 61.111 2.29 0.00 35.72 4.24
2250 5851 2.125229 CAGCGCCATCACTGAGCT 60.125 61.111 2.29 0.00 36.88 4.09
2251 5852 2.125391 TCAGCGCCATCACTGAGC 60.125 61.111 2.29 0.00 37.99 4.26
2253 5854 2.125391 GCTCAGCGCCATCACTGA 60.125 61.111 2.29 0.00 40.54 3.41
2274 5875 1.534336 TACTTACCGGCGCTTGGTCA 61.534 55.000 24.58 15.15 40.96 4.02
2319 5920 5.709164 ACACGTATGGAGTACTTTACAGAGT 59.291 40.000 0.00 0.00 0.00 3.24
2332 5933 1.421410 GCAGCGGAACACGTATGGAG 61.421 60.000 0.00 0.00 46.52 3.86
2334 5935 2.798501 CGCAGCGGAACACGTATGG 61.799 63.158 7.00 0.00 46.52 2.74
2426 6312 2.027625 GAACTGCCCTCGTTGTCGG 61.028 63.158 0.00 0.00 37.69 4.79
2427 6313 1.284982 CTGAACTGCCCTCGTTGTCG 61.285 60.000 0.00 0.00 38.55 4.35
2484 6370 2.320587 CGTCTGCACCACAAGCCTC 61.321 63.158 0.00 0.00 0.00 4.70
2731 6774 0.820871 GAGCTGTCGGAGGAAGATGT 59.179 55.000 0.00 0.00 0.00 3.06
2845 6891 3.741476 CTTGGTGCGCTGGAAGGC 61.741 66.667 9.73 0.00 0.00 4.35
2846 6892 3.058160 CCTTGGTGCGCTGGAAGG 61.058 66.667 9.73 12.91 0.00 3.46
2847 6893 2.032528 TCCTTGGTGCGCTGGAAG 59.967 61.111 9.73 7.41 0.00 3.46
2848 6894 2.281484 GTCCTTGGTGCGCTGGAA 60.281 61.111 9.73 0.00 0.00 3.53
2849 6895 4.680237 CGTCCTTGGTGCGCTGGA 62.680 66.667 9.73 5.77 0.00 3.86
2850 6896 4.680237 TCGTCCTTGGTGCGCTGG 62.680 66.667 9.73 3.24 0.00 4.85
2851 6897 3.114616 CTCGTCCTTGGTGCGCTG 61.115 66.667 9.73 0.00 0.00 5.18
2856 6902 4.760047 CGGGGCTCGTCCTTGGTG 62.760 72.222 0.00 0.00 34.39 4.17
2940 6986 0.167908 CGCACATGTAAACGCCACAT 59.832 50.000 0.00 0.00 37.09 3.21
2999 7052 4.613944 TCAACAGCAAGAAAAAGCATCAG 58.386 39.130 0.00 0.00 0.00 2.90
3011 7064 7.596248 ACAATTGCTTATTTACTCAACAGCAAG 59.404 33.333 5.05 1.11 42.98 4.01
3053 7106 9.990360 TTACGTCATGCTTATGATTTATTCCTA 57.010 29.630 0.00 0.00 32.61 2.94
3061 7115 6.985188 ACTGTTTACGTCATGCTTATGATT 57.015 33.333 0.00 0.00 32.61 2.57
3134 7188 6.631016 AGACGTTATGTGTAGATGTGTCAAT 58.369 36.000 0.00 0.00 0.00 2.57
3136 7190 5.182380 TGAGACGTTATGTGTAGATGTGTCA 59.818 40.000 0.00 0.00 0.00 3.58
3184 7238 1.560860 CGCCAAGCTTATCGCCTAGC 61.561 60.000 0.00 0.00 40.39 3.42
3186 7240 1.069090 CCGCCAAGCTTATCGCCTA 59.931 57.895 12.42 0.00 40.39 3.93
3227 7283 1.203994 GAACTCGAGGTCAAATCCGGA 59.796 52.381 25.52 6.61 0.00 5.14
3241 7297 0.179073 ATGGAATCGCAGGGAACTCG 60.179 55.000 0.00 0.00 40.21 4.18
3253 7309 5.170021 CGATGATCTCTCTTGGATGGAATC 58.830 45.833 0.00 0.00 44.55 2.52
3262 7318 6.072230 TCCTAATACAGCGATGATCTCTCTTG 60.072 42.308 8.12 0.00 0.00 3.02
3276 7332 5.923684 GTCTATGCTTGTCTCCTAATACAGC 59.076 44.000 0.00 0.00 0.00 4.40
3278 7334 6.040955 CAGGTCTATGCTTGTCTCCTAATACA 59.959 42.308 0.00 0.00 0.00 2.29
3371 7427 3.447586 TCCGCTCTGTTCTTAGTAGCATT 59.552 43.478 0.00 0.00 32.69 3.56
3377 7433 1.546476 CAGGTCCGCTCTGTTCTTAGT 59.454 52.381 0.00 0.00 0.00 2.24
3412 7468 1.161563 TTTCTTCCACGTCAACGCCC 61.162 55.000 1.81 0.00 44.43 6.13
3433 7489 2.824341 GGACTCAGTTTCTCCGACCTTA 59.176 50.000 0.00 0.00 0.00 2.69
3464 7520 2.427453 CGGTGTTAGATGTAGAGCCACT 59.573 50.000 0.00 0.00 0.00 4.00
3574 7630 2.787601 CCATGAATTCGGCATCCTTG 57.212 50.000 0.04 0.00 0.00 3.61
3598 7654 1.869754 CGTGAGGTATGAATCCTGGCG 60.870 57.143 0.00 0.00 35.20 5.69
3656 7712 1.677637 CTGGAACCGGGACTAGCTCC 61.678 65.000 6.32 0.24 38.55 4.70
3657 7713 0.683504 TCTGGAACCGGGACTAGCTC 60.684 60.000 6.32 0.00 0.00 4.09
3658 7714 0.684805 CTCTGGAACCGGGACTAGCT 60.685 60.000 6.32 0.00 0.00 3.32
3659 7715 1.677637 CCTCTGGAACCGGGACTAGC 61.678 65.000 6.32 0.00 0.00 3.42
3660 7716 1.043673 CCCTCTGGAACCGGGACTAG 61.044 65.000 6.32 6.80 40.55 2.57
3661 7717 1.001248 CCCTCTGGAACCGGGACTA 59.999 63.158 6.32 0.00 40.55 2.59
3662 7718 2.284699 CCCTCTGGAACCGGGACT 60.285 66.667 6.32 0.00 40.55 3.85
3663 7719 4.097361 GCCCTCTGGAACCGGGAC 62.097 72.222 6.32 0.00 40.55 4.46
3666 7722 1.559065 TAAAGGCCCTCTGGAACCGG 61.559 60.000 0.00 0.00 0.00 5.28
3667 7723 0.107654 CTAAAGGCCCTCTGGAACCG 60.108 60.000 0.00 0.00 0.00 4.44
3668 7724 0.992695 ACTAAAGGCCCTCTGGAACC 59.007 55.000 0.00 0.00 0.00 3.62
3669 7725 1.065345 GGACTAAAGGCCCTCTGGAAC 60.065 57.143 0.00 0.00 0.00 3.62
3670 7726 1.286248 GGACTAAAGGCCCTCTGGAA 58.714 55.000 0.00 0.00 0.00 3.53
3671 7727 0.620700 GGGACTAAAGGCCCTCTGGA 60.621 60.000 14.19 0.00 41.31 3.86
3672 7728 1.915983 GGGACTAAAGGCCCTCTGG 59.084 63.158 14.19 0.00 41.31 3.86
3673 7729 1.522569 CGGGACTAAAGGCCCTCTG 59.477 63.158 18.97 0.00 42.40 3.35
3674 7730 1.689582 CCGGGACTAAAGGCCCTCT 60.690 63.158 18.97 0.00 42.40 3.69
3675 7731 1.559965 AACCGGGACTAAAGGCCCTC 61.560 60.000 18.97 0.00 42.40 4.30
3676 7732 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
3677 7733 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
3678 7734 0.392595 CAGAACCGGGACTAAAGGCC 60.393 60.000 6.32 0.00 0.00 5.19
3679 7735 0.392595 CCAGAACCGGGACTAAAGGC 60.393 60.000 6.32 0.00 0.00 4.35
3680 7736 1.272807 TCCAGAACCGGGACTAAAGG 58.727 55.000 6.32 2.64 0.00 3.11
3681 7737 2.696506 GTTCCAGAACCGGGACTAAAG 58.303 52.381 6.32 0.00 35.36 1.85
3682 7738 2.845363 GTTCCAGAACCGGGACTAAA 57.155 50.000 6.32 0.06 35.36 1.85
3692 7748 1.335810 GTTTTGTCCCGGTTCCAGAAC 59.664 52.381 0.00 1.77 40.45 3.01
3693 7749 1.682740 GTTTTGTCCCGGTTCCAGAA 58.317 50.000 0.00 0.00 0.00 3.02
3694 7750 0.533308 CGTTTTGTCCCGGTTCCAGA 60.533 55.000 0.00 0.00 0.00 3.86
3695 7751 1.512156 CCGTTTTGTCCCGGTTCCAG 61.512 60.000 0.00 0.00 39.38 3.86
3696 7752 1.526455 CCGTTTTGTCCCGGTTCCA 60.526 57.895 0.00 0.00 39.38 3.53
3697 7753 3.347168 CCGTTTTGTCCCGGTTCC 58.653 61.111 0.00 0.00 39.38 3.62
3702 7758 3.045492 CCCGACCGTTTTGTCCCG 61.045 66.667 0.00 0.00 31.35 5.14
3703 7759 1.962822 GTCCCGACCGTTTTGTCCC 60.963 63.158 0.00 0.00 31.35 4.46
3704 7760 0.318120 TAGTCCCGACCGTTTTGTCC 59.682 55.000 0.00 0.00 31.35 4.02
3705 7761 2.153366 TTAGTCCCGACCGTTTTGTC 57.847 50.000 0.00 0.00 0.00 3.18
3706 7762 2.486918 CTTTAGTCCCGACCGTTTTGT 58.513 47.619 0.00 0.00 0.00 2.83
3707 7763 1.196127 GCTTTAGTCCCGACCGTTTTG 59.804 52.381 0.00 0.00 0.00 2.44
3708 7764 1.516161 GCTTTAGTCCCGACCGTTTT 58.484 50.000 0.00 0.00 0.00 2.43
3709 7765 0.321034 GGCTTTAGTCCCGACCGTTT 60.321 55.000 0.00 0.00 0.00 3.60
3710 7766 1.294459 GGCTTTAGTCCCGACCGTT 59.706 57.895 0.00 0.00 0.00 4.44
3711 7767 2.653087 GGGCTTTAGTCCCGACCGT 61.653 63.158 0.00 0.00 32.49 4.83
3712 7768 2.175035 TTGGGCTTTAGTCCCGACCG 62.175 60.000 0.00 0.00 46.92 4.79
3713 7769 0.037160 TTTGGGCTTTAGTCCCGACC 59.963 55.000 0.00 0.00 46.92 4.79
3714 7770 1.538512 GTTTTGGGCTTTAGTCCCGAC 59.461 52.381 0.00 0.00 46.92 4.79
3715 7771 1.546099 GGTTTTGGGCTTTAGTCCCGA 60.546 52.381 0.00 0.00 46.92 5.14
3716 7772 0.885879 GGTTTTGGGCTTTAGTCCCG 59.114 55.000 0.00 0.00 46.92 5.14
3717 7773 2.304221 AGGTTTTGGGCTTTAGTCCC 57.696 50.000 0.00 0.54 39.61 4.46
3718 7774 4.831155 ACTAAAGGTTTTGGGCTTTAGTCC 59.169 41.667 2.77 0.00 44.39 3.85
3721 7777 4.219944 GGGACTAAAGGTTTTGGGCTTTAG 59.780 45.833 1.97 1.97 42.08 1.85
3722 7778 4.154176 GGGACTAAAGGTTTTGGGCTTTA 58.846 43.478 0.00 0.00 0.00 1.85
3723 7779 2.969950 GGGACTAAAGGTTTTGGGCTTT 59.030 45.455 0.00 0.00 0.00 3.51
3724 7780 2.605257 GGGACTAAAGGTTTTGGGCTT 58.395 47.619 0.00 0.00 0.00 4.35
3725 7781 1.546998 CGGGACTAAAGGTTTTGGGCT 60.547 52.381 0.00 0.00 0.00 5.19
3726 7782 0.885879 CGGGACTAAAGGTTTTGGGC 59.114 55.000 0.00 0.00 0.00 5.36
3727 7783 1.202964 ACCGGGACTAAAGGTTTTGGG 60.203 52.381 6.32 0.00 33.96 4.12
3728 7784 2.281539 ACCGGGACTAAAGGTTTTGG 57.718 50.000 6.32 0.00 33.96 3.28
3733 7789 1.190178 AGCGAACCGGGACTAAAGGT 61.190 55.000 6.32 0.00 40.50 3.50
3734 7790 0.036671 AAGCGAACCGGGACTAAAGG 60.037 55.000 6.32 0.00 0.00 3.11
3735 7791 2.265683 GTAAGCGAACCGGGACTAAAG 58.734 52.381 6.32 0.00 0.00 1.85
3736 7792 1.402720 CGTAAGCGAACCGGGACTAAA 60.403 52.381 6.32 0.00 41.33 1.85
3737 7793 0.171007 CGTAAGCGAACCGGGACTAA 59.829 55.000 6.32 0.00 41.33 2.24
3738 7794 0.676466 TCGTAAGCGAACCGGGACTA 60.676 55.000 6.32 0.00 44.92 2.59
3739 7795 1.973281 TCGTAAGCGAACCGGGACT 60.973 57.895 6.32 0.00 44.92 3.85
3740 7796 2.568090 TCGTAAGCGAACCGGGAC 59.432 61.111 6.32 0.00 44.92 4.46
3748 7804 0.242825 CTGTCCCAGTTCGTAAGCGA 59.757 55.000 0.00 0.00 46.36 4.93
3749 7805 0.242825 TCTGTCCCAGTTCGTAAGCG 59.757 55.000 0.00 0.00 34.53 4.68
3750 7806 2.338500 CTTCTGTCCCAGTTCGTAAGC 58.662 52.381 0.00 0.00 32.61 3.09
3751 7807 2.353803 CCCTTCTGTCCCAGTTCGTAAG 60.354 54.545 0.00 0.00 32.61 2.34
3752 7808 1.621814 CCCTTCTGTCCCAGTTCGTAA 59.378 52.381 0.00 0.00 32.61 3.18
3753 7809 1.263356 CCCTTCTGTCCCAGTTCGTA 58.737 55.000 0.00 0.00 32.61 3.43
3754 7810 1.481056 CCCCTTCTGTCCCAGTTCGT 61.481 60.000 0.00 0.00 32.61 3.85
3755 7811 1.296715 CCCCTTCTGTCCCAGTTCG 59.703 63.158 0.00 0.00 32.61 3.95
3756 7812 1.002011 GCCCCTTCTGTCCCAGTTC 60.002 63.158 0.00 0.00 32.61 3.01
3757 7813 1.464198 AGCCCCTTCTGTCCCAGTT 60.464 57.895 0.00 0.00 32.61 3.16
3758 7814 1.920835 GAGCCCCTTCTGTCCCAGT 60.921 63.158 0.00 0.00 32.61 4.00
3759 7815 2.674220 GGAGCCCCTTCTGTCCCAG 61.674 68.421 0.00 0.00 0.00 4.45
3760 7816 2.610859 GGAGCCCCTTCTGTCCCA 60.611 66.667 0.00 0.00 0.00 4.37
3761 7817 2.610859 TGGAGCCCCTTCTGTCCC 60.611 66.667 0.00 0.00 0.00 4.46
3762 7818 2.671682 GTGGAGCCCCTTCTGTCC 59.328 66.667 0.00 0.00 0.00 4.02
3763 7819 2.266055 CGTGGAGCCCCTTCTGTC 59.734 66.667 0.00 0.00 0.00 3.51
3764 7820 2.526873 ACGTGGAGCCCCTTCTGT 60.527 61.111 0.00 0.00 0.00 3.41
3765 7821 2.046892 CACGTGGAGCCCCTTCTG 60.047 66.667 7.95 0.00 0.00 3.02
3766 7822 3.322466 CCACGTGGAGCCCCTTCT 61.322 66.667 31.31 0.00 37.39 2.85
3795 7851 4.785453 GGTCCTCCTGCTTGGGCG 62.785 72.222 0.00 0.00 42.25 6.13
3796 7852 2.432174 AAAGGTCCTCCTGCTTGGGC 62.432 60.000 0.00 0.00 44.35 5.36
3797 7853 0.991920 TAAAGGTCCTCCTGCTTGGG 59.008 55.000 0.00 0.00 44.35 4.12
3798 7854 1.630878 ACTAAAGGTCCTCCTGCTTGG 59.369 52.381 0.00 0.00 44.35 3.61
3799 7855 2.979240 GACTAAAGGTCCTCCTGCTTG 58.021 52.381 0.00 0.00 44.35 4.01
3809 7865 0.689055 ACCAACCGGGACTAAAGGTC 59.311 55.000 6.32 0.00 43.79 3.85
3810 7866 2.028561 TACCAACCGGGACTAAAGGT 57.971 50.000 6.32 5.18 41.15 3.50
3811 7867 2.038820 TGTTACCAACCGGGACTAAAGG 59.961 50.000 6.32 0.00 41.15 3.11
3812 7868 3.069289 GTGTTACCAACCGGGACTAAAG 58.931 50.000 6.32 0.00 41.15 1.85
3813 7869 2.224499 GGTGTTACCAACCGGGACTAAA 60.224 50.000 6.32 0.00 38.42 1.85
3814 7870 1.347378 GGTGTTACCAACCGGGACTAA 59.653 52.381 6.32 0.00 38.42 2.24
3815 7871 0.975887 GGTGTTACCAACCGGGACTA 59.024 55.000 6.32 0.00 38.42 2.59
3816 7872 1.756665 GGTGTTACCAACCGGGACT 59.243 57.895 6.32 0.00 38.42 3.85
3817 7873 4.384599 GGTGTTACCAACCGGGAC 57.615 61.111 6.32 0.00 38.42 4.46
3826 7882 1.302752 GGTCCCGGTTGGTGTTACC 60.303 63.158 0.00 0.00 39.22 2.85
3827 7883 0.179023 TTGGTCCCGGTTGGTGTTAC 60.179 55.000 0.00 0.00 34.77 2.50
3828 7884 0.549950 TTTGGTCCCGGTTGGTGTTA 59.450 50.000 0.00 0.00 34.77 2.41
3829 7885 0.324460 TTTTGGTCCCGGTTGGTGTT 60.324 50.000 0.00 0.00 34.77 3.32
3830 7886 0.753848 CTTTTGGTCCCGGTTGGTGT 60.754 55.000 0.00 0.00 34.77 4.16
3831 7887 0.466555 TCTTTTGGTCCCGGTTGGTG 60.467 55.000 0.00 0.00 34.77 4.17
3832 7888 0.259356 TTCTTTTGGTCCCGGTTGGT 59.741 50.000 0.00 0.00 34.77 3.67
3833 7889 1.339929 CTTTCTTTTGGTCCCGGTTGG 59.660 52.381 0.00 0.00 0.00 3.77
3834 7890 2.028876 ACTTTCTTTTGGTCCCGGTTG 58.971 47.619 0.00 0.00 0.00 3.77
3835 7891 2.304092 GACTTTCTTTTGGTCCCGGTT 58.696 47.619 0.00 0.00 0.00 4.44
3836 7892 1.213430 TGACTTTCTTTTGGTCCCGGT 59.787 47.619 0.00 0.00 0.00 5.28
3837 7893 1.607148 GTGACTTTCTTTTGGTCCCGG 59.393 52.381 0.00 0.00 0.00 5.73
3838 7894 1.263217 CGTGACTTTCTTTTGGTCCCG 59.737 52.381 0.00 0.00 0.00 5.14
3839 7895 1.001706 GCGTGACTTTCTTTTGGTCCC 60.002 52.381 0.00 0.00 0.00 4.46
3840 7896 1.333791 CGCGTGACTTTCTTTTGGTCC 60.334 52.381 0.00 0.00 0.00 4.46
3841 7897 1.329599 ACGCGTGACTTTCTTTTGGTC 59.670 47.619 12.93 0.00 0.00 4.02
3842 7898 1.329599 GACGCGTGACTTTCTTTTGGT 59.670 47.619 20.70 0.00 0.00 3.67
3843 7899 1.329292 TGACGCGTGACTTTCTTTTGG 59.671 47.619 20.70 0.00 0.00 3.28
3844 7900 2.629022 CTGACGCGTGACTTTCTTTTG 58.371 47.619 20.70 0.00 0.00 2.44
3845 7901 1.003866 GCTGACGCGTGACTTTCTTTT 60.004 47.619 20.70 0.00 0.00 2.27
3846 7902 0.582005 GCTGACGCGTGACTTTCTTT 59.418 50.000 20.70 0.00 0.00 2.52
3847 7903 0.529773 TGCTGACGCGTGACTTTCTT 60.530 50.000 20.70 0.00 39.65 2.52
3848 7904 0.941463 CTGCTGACGCGTGACTTTCT 60.941 55.000 20.70 0.00 39.65 2.52
3849 7905 1.488957 CTGCTGACGCGTGACTTTC 59.511 57.895 20.70 0.06 39.65 2.62
3850 7906 2.598632 GCTGCTGACGCGTGACTTT 61.599 57.895 20.70 0.00 39.65 2.66
3851 7907 3.038417 GCTGCTGACGCGTGACTT 61.038 61.111 20.70 0.00 39.65 3.01
3852 7908 3.905705 GAGCTGCTGACGCGTGACT 62.906 63.158 20.70 0.00 39.65 3.41
3853 7909 3.474034 GAGCTGCTGACGCGTGAC 61.474 66.667 20.70 2.93 39.65 3.67
3866 7922 2.363711 TTTGACACCGACAGCGAGCT 62.364 55.000 0.00 0.00 40.82 4.09
3867 7923 1.495584 TTTTGACACCGACAGCGAGC 61.496 55.000 0.00 0.00 40.82 5.03
3868 7924 0.232303 GTTTTGACACCGACAGCGAG 59.768 55.000 0.00 0.00 40.82 5.03
3869 7925 1.155424 GGTTTTGACACCGACAGCGA 61.155 55.000 0.00 0.00 40.82 4.93
3870 7926 1.278637 GGTTTTGACACCGACAGCG 59.721 57.895 0.00 0.00 37.24 5.18
3877 7933 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
3878 7934 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
3879 7935 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
3880 7936 0.672401 TGAGATCCGCCGGTTTTGAC 60.672 55.000 1.63 0.00 0.00 3.18
3881 7937 0.391130 CTGAGATCCGCCGGTTTTGA 60.391 55.000 1.63 0.00 0.00 2.69
3882 7938 1.369091 CCTGAGATCCGCCGGTTTTG 61.369 60.000 1.63 0.00 0.00 2.44
3883 7939 1.078426 CCTGAGATCCGCCGGTTTT 60.078 57.895 1.63 0.00 0.00 2.43
3884 7940 0.974010 TACCTGAGATCCGCCGGTTT 60.974 55.000 1.63 0.00 0.00 3.27
3885 7941 1.380785 TACCTGAGATCCGCCGGTT 60.381 57.895 1.63 0.00 0.00 4.44
3886 7942 1.828660 CTACCTGAGATCCGCCGGT 60.829 63.158 1.63 4.98 0.00 5.28
3887 7943 2.565645 CCTACCTGAGATCCGCCGG 61.566 68.421 0.00 0.00 0.00 6.13
3888 7944 2.565645 CCCTACCTGAGATCCGCCG 61.566 68.421 0.00 0.00 0.00 6.46
3889 7945 2.210711 CCCCTACCTGAGATCCGCC 61.211 68.421 0.00 0.00 0.00 6.13
3890 7946 2.210711 CCCCCTACCTGAGATCCGC 61.211 68.421 0.00 0.00 0.00 5.54
3891 7947 0.828343 GACCCCCTACCTGAGATCCG 60.828 65.000 0.00 0.00 0.00 4.18
3892 7948 0.264955 TGACCCCCTACCTGAGATCC 59.735 60.000 0.00 0.00 0.00 3.36
3893 7949 1.415200 GTGACCCCCTACCTGAGATC 58.585 60.000 0.00 0.00 0.00 2.75
3894 7950 0.397254 CGTGACCCCCTACCTGAGAT 60.397 60.000 0.00 0.00 0.00 2.75
3895 7951 1.000019 CGTGACCCCCTACCTGAGA 60.000 63.158 0.00 0.00 0.00 3.27
3896 7952 0.613853 TTCGTGACCCCCTACCTGAG 60.614 60.000 0.00 0.00 0.00 3.35
3897 7953 0.901580 GTTCGTGACCCCCTACCTGA 60.902 60.000 0.00 0.00 0.00 3.86
3898 7954 0.903454 AGTTCGTGACCCCCTACCTG 60.903 60.000 0.00 0.00 0.00 4.00
3899 7955 0.903454 CAGTTCGTGACCCCCTACCT 60.903 60.000 0.00 0.00 0.00 3.08
3900 7956 1.190178 ACAGTTCGTGACCCCCTACC 61.190 60.000 0.00 0.00 0.00 3.18
3901 7957 2.359088 ACAGTTCGTGACCCCCTAC 58.641 57.895 0.00 0.00 0.00 3.18
3902 7958 4.959349 ACAGTTCGTGACCCCCTA 57.041 55.556 0.00 0.00 0.00 3.53
3911 7967 0.956633 TCCTTAGACGCACAGTTCGT 59.043 50.000 0.00 0.00 43.49 3.85
3912 7968 2.186076 GATCCTTAGACGCACAGTTCG 58.814 52.381 0.00 0.00 0.00 3.95
3913 7969 2.159421 TCGATCCTTAGACGCACAGTTC 60.159 50.000 0.00 0.00 0.00 3.01
3914 7970 1.816835 TCGATCCTTAGACGCACAGTT 59.183 47.619 0.00 0.00 0.00 3.16
3915 7971 1.460504 TCGATCCTTAGACGCACAGT 58.539 50.000 0.00 0.00 0.00 3.55
3916 7972 2.455032 CTTCGATCCTTAGACGCACAG 58.545 52.381 0.00 0.00 0.00 3.66
3917 7973 1.134367 CCTTCGATCCTTAGACGCACA 59.866 52.381 0.00 0.00 0.00 4.57
3918 7974 1.134560 ACCTTCGATCCTTAGACGCAC 59.865 52.381 0.00 0.00 0.00 5.34
3919 7975 1.471119 ACCTTCGATCCTTAGACGCA 58.529 50.000 0.00 0.00 0.00 5.24
3920 7976 3.181493 TGTTACCTTCGATCCTTAGACGC 60.181 47.826 0.00 0.00 0.00 5.19
3921 7977 4.497674 CCTGTTACCTTCGATCCTTAGACG 60.498 50.000 0.00 0.00 0.00 4.18
3922 7978 4.643784 TCCTGTTACCTTCGATCCTTAGAC 59.356 45.833 0.00 0.00 0.00 2.59
3923 7979 4.863548 TCCTGTTACCTTCGATCCTTAGA 58.136 43.478 0.00 0.00 0.00 2.10
3924 7980 4.038162 CCTCCTGTTACCTTCGATCCTTAG 59.962 50.000 0.00 0.00 0.00 2.18
3925 7981 3.958798 CCTCCTGTTACCTTCGATCCTTA 59.041 47.826 0.00 0.00 0.00 2.69
3926 7982 2.766828 CCTCCTGTTACCTTCGATCCTT 59.233 50.000 0.00 0.00 0.00 3.36
3927 7983 2.389715 CCTCCTGTTACCTTCGATCCT 58.610 52.381 0.00 0.00 0.00 3.24
3928 7984 1.202545 GCCTCCTGTTACCTTCGATCC 60.203 57.143 0.00 0.00 0.00 3.36
3929 7985 1.480954 TGCCTCCTGTTACCTTCGATC 59.519 52.381 0.00 0.00 0.00 3.69
3930 7986 1.482593 CTGCCTCCTGTTACCTTCGAT 59.517 52.381 0.00 0.00 0.00 3.59
3931 7987 0.895530 CTGCCTCCTGTTACCTTCGA 59.104 55.000 0.00 0.00 0.00 3.71
3932 7988 0.108138 CCTGCCTCCTGTTACCTTCG 60.108 60.000 0.00 0.00 0.00 3.79
3933 7989 0.253327 CCCTGCCTCCTGTTACCTTC 59.747 60.000 0.00 0.00 0.00 3.46
3934 7990 0.178873 TCCCTGCCTCCTGTTACCTT 60.179 55.000 0.00 0.00 0.00 3.50
3935 7991 0.910088 GTCCCTGCCTCCTGTTACCT 60.910 60.000 0.00 0.00 0.00 3.08
3936 7992 1.602771 GTCCCTGCCTCCTGTTACC 59.397 63.158 0.00 0.00 0.00 2.85
3937 7993 1.218316 CGTCCCTGCCTCCTGTTAC 59.782 63.158 0.00 0.00 0.00 2.50
3938 7994 2.656069 GCGTCCCTGCCTCCTGTTA 61.656 63.158 0.00 0.00 0.00 2.41
3939 7995 4.021925 GCGTCCCTGCCTCCTGTT 62.022 66.667 0.00 0.00 0.00 3.16
3941 7997 4.463879 CTGCGTCCCTGCCTCCTG 62.464 72.222 0.00 0.00 0.00 3.86
3943 7999 4.767255 CACTGCGTCCCTGCCTCC 62.767 72.222 0.00 0.00 0.00 4.30
3944 8000 3.537206 AACACTGCGTCCCTGCCTC 62.537 63.158 0.00 0.00 0.00 4.70
3945 8001 1.764571 TAAACACTGCGTCCCTGCCT 61.765 55.000 0.00 0.00 0.00 4.75
3946 8002 1.302192 TAAACACTGCGTCCCTGCC 60.302 57.895 0.00 0.00 0.00 4.85
3947 8003 1.574702 GGTAAACACTGCGTCCCTGC 61.575 60.000 0.00 0.00 0.00 4.85
3948 8004 0.953960 GGGTAAACACTGCGTCCCTG 60.954 60.000 0.00 0.00 32.89 4.45
3949 8005 1.373812 GGGTAAACACTGCGTCCCT 59.626 57.895 0.00 0.00 32.89 4.20
3950 8006 0.953960 CTGGGTAAACACTGCGTCCC 60.954 60.000 0.00 0.00 35.85 4.46
3951 8007 0.953960 CCTGGGTAAACACTGCGTCC 60.954 60.000 0.00 0.00 0.00 4.79
3952 8008 0.250166 ACCTGGGTAAACACTGCGTC 60.250 55.000 0.00 0.00 0.00 5.19
3953 8009 0.181824 AACCTGGGTAAACACTGCGT 59.818 50.000 0.00 0.00 0.00 5.24
3954 8010 0.872388 GAACCTGGGTAAACACTGCG 59.128 55.000 0.00 0.00 0.00 5.18
3955 8011 0.872388 CGAACCTGGGTAAACACTGC 59.128 55.000 0.00 0.00 0.00 4.40
3956 8012 1.519408 CCGAACCTGGGTAAACACTG 58.481 55.000 0.00 0.00 0.00 3.66
3957 8013 0.399075 CCCGAACCTGGGTAAACACT 59.601 55.000 0.00 0.00 44.76 3.55
3958 8014 2.936928 CCCGAACCTGGGTAAACAC 58.063 57.895 0.00 0.00 44.76 3.32
3966 8022 3.330720 AAGAGGGCCCGAACCTGG 61.331 66.667 18.44 0.00 38.79 4.45
3967 8023 1.915078 ATCAAGAGGGCCCGAACCTG 61.915 60.000 18.44 12.14 38.79 4.00
3968 8024 1.616628 ATCAAGAGGGCCCGAACCT 60.617 57.895 18.44 9.75 42.18 3.50
3969 8025 1.452108 CATCAAGAGGGCCCGAACC 60.452 63.158 18.44 7.31 0.00 3.62
3970 8026 1.452108 CCATCAAGAGGGCCCGAAC 60.452 63.158 18.44 12.45 0.00 3.95
3971 8027 1.615124 TCCATCAAGAGGGCCCGAA 60.615 57.895 18.44 1.01 31.15 4.30
3972 8028 2.040442 TCCATCAAGAGGGCCCGA 59.960 61.111 18.44 8.04 31.15 5.14
3973 8029 2.507944 CTCCATCAAGAGGGCCCG 59.492 66.667 18.44 1.05 31.15 6.13
3979 8035 6.078664 AGTAGGGTATTACCTCCATCAAGAG 58.921 44.000 12.54 0.00 42.09 2.85
3980 8036 6.039415 AGTAGGGTATTACCTCCATCAAGA 57.961 41.667 12.54 0.00 42.09 3.02
3981 8037 6.239629 GGAAGTAGGGTATTACCTCCATCAAG 60.240 46.154 12.54 0.00 42.09 3.02
3982 8038 5.605488 GGAAGTAGGGTATTACCTCCATCAA 59.395 44.000 12.54 0.00 42.09 2.57
3983 8039 5.102783 AGGAAGTAGGGTATTACCTCCATCA 60.103 44.000 16.39 0.00 42.09 3.07
3984 8040 5.246429 CAGGAAGTAGGGTATTACCTCCATC 59.754 48.000 16.39 8.41 42.09 3.51
3985 8041 5.155905 CAGGAAGTAGGGTATTACCTCCAT 58.844 45.833 16.39 4.17 42.09 3.41
3986 8042 4.553678 CAGGAAGTAGGGTATTACCTCCA 58.446 47.826 16.39 0.80 42.09 3.86
3987 8043 3.324268 GCAGGAAGTAGGGTATTACCTCC 59.676 52.174 12.54 10.66 42.09 4.30
3988 8044 4.224762 AGCAGGAAGTAGGGTATTACCTC 58.775 47.826 12.54 2.11 42.09 3.85
3989 8045 4.282292 AGCAGGAAGTAGGGTATTACCT 57.718 45.455 12.54 2.07 44.75 3.08
3990 8046 4.407945 TCAAGCAGGAAGTAGGGTATTACC 59.592 45.833 4.11 4.11 37.60 2.85
3991 8047 5.609533 TCAAGCAGGAAGTAGGGTATTAC 57.390 43.478 0.00 0.00 0.00 1.89
3992 8048 6.385759 TCAATCAAGCAGGAAGTAGGGTATTA 59.614 38.462 0.00 0.00 0.00 0.98
3993 8049 5.191722 TCAATCAAGCAGGAAGTAGGGTATT 59.808 40.000 0.00 0.00 0.00 1.89
3994 8050 4.721776 TCAATCAAGCAGGAAGTAGGGTAT 59.278 41.667 0.00 0.00 0.00 2.73
3995 8051 4.081087 GTCAATCAAGCAGGAAGTAGGGTA 60.081 45.833 0.00 0.00 0.00 3.69
3996 8052 2.912956 TCAATCAAGCAGGAAGTAGGGT 59.087 45.455 0.00 0.00 0.00 4.34
3997 8053 3.054802 AGTCAATCAAGCAGGAAGTAGGG 60.055 47.826 0.00 0.00 0.00 3.53
3998 8054 4.213564 AGTCAATCAAGCAGGAAGTAGG 57.786 45.455 0.00 0.00 0.00 3.18
3999 8055 5.702670 TCAAAGTCAATCAAGCAGGAAGTAG 59.297 40.000 0.00 0.00 0.00 2.57
4000 8056 5.620206 TCAAAGTCAATCAAGCAGGAAGTA 58.380 37.500 0.00 0.00 0.00 2.24
4001 8057 4.464008 TCAAAGTCAATCAAGCAGGAAGT 58.536 39.130 0.00 0.00 0.00 3.01
4002 8058 5.182570 TCATCAAAGTCAATCAAGCAGGAAG 59.817 40.000 0.00 0.00 0.00 3.46
4003 8059 5.072055 TCATCAAAGTCAATCAAGCAGGAA 58.928 37.500 0.00 0.00 0.00 3.36
4004 8060 4.654915 TCATCAAAGTCAATCAAGCAGGA 58.345 39.130 0.00 0.00 0.00 3.86
4005 8061 4.458295 ACTCATCAAAGTCAATCAAGCAGG 59.542 41.667 0.00 0.00 0.00 4.85
4006 8062 5.624344 ACTCATCAAAGTCAATCAAGCAG 57.376 39.130 0.00 0.00 0.00 4.24
4007 8063 5.997129 TGTACTCATCAAAGTCAATCAAGCA 59.003 36.000 0.00 0.00 0.00 3.91
4008 8064 6.369890 TCTGTACTCATCAAAGTCAATCAAGC 59.630 38.462 0.00 0.00 0.00 4.01
4009 8065 7.064371 CCTCTGTACTCATCAAAGTCAATCAAG 59.936 40.741 0.00 0.00 0.00 3.02
4010 8066 6.875726 CCTCTGTACTCATCAAAGTCAATCAA 59.124 38.462 0.00 0.00 0.00 2.57
4011 8067 6.014242 ACCTCTGTACTCATCAAAGTCAATCA 60.014 38.462 0.00 0.00 0.00 2.57
4012 8068 6.402222 ACCTCTGTACTCATCAAAGTCAATC 58.598 40.000 0.00 0.00 0.00 2.67
4013 8069 6.365970 ACCTCTGTACTCATCAAAGTCAAT 57.634 37.500 0.00 0.00 0.00 2.57
4014 8070 5.808366 ACCTCTGTACTCATCAAAGTCAA 57.192 39.130 0.00 0.00 0.00 3.18
4015 8071 5.808366 AACCTCTGTACTCATCAAAGTCA 57.192 39.130 0.00 0.00 0.00 3.41
4016 8072 6.688578 TGTAACCTCTGTACTCATCAAAGTC 58.311 40.000 0.00 0.00 0.00 3.01
4017 8073 6.665992 TGTAACCTCTGTACTCATCAAAGT 57.334 37.500 0.00 0.00 0.00 2.66
4018 8074 7.378966 TCTTGTAACCTCTGTACTCATCAAAG 58.621 38.462 0.00 0.00 0.00 2.77
4019 8075 7.297936 TCTTGTAACCTCTGTACTCATCAAA 57.702 36.000 0.00 0.00 0.00 2.69
4020 8076 6.911250 TCTTGTAACCTCTGTACTCATCAA 57.089 37.500 0.00 0.00 0.00 2.57
4021 8077 6.516739 CTCTTGTAACCTCTGTACTCATCA 57.483 41.667 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.