Multiple sequence alignment - TraesCS1D01G072400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G072400 chr1D 100.000 2198 0 0 1 2198 52716364 52718561 0.000000e+00 4060.0
1 TraesCS1D01G072400 chr1D 98.744 637 8 0 2 638 155878215 155878851 0.000000e+00 1133.0
2 TraesCS1D01G072400 chr1D 98.742 636 8 0 2 637 41438376 41437741 0.000000e+00 1131.0
3 TraesCS1D01G072400 chr1D 98.744 637 7 1 2 638 460320559 460321194 0.000000e+00 1131.0
4 TraesCS1D01G072400 chr1D 98.589 638 9 0 2 639 488830257 488830894 0.000000e+00 1129.0
5 TraesCS1D01G072400 chr1D 86.765 136 4 3 2035 2158 52736392 52736525 2.940000e-29 139.0
6 TraesCS1D01G072400 chr2D 92.078 1073 52 12 984 2025 607136116 607135046 0.000000e+00 1480.0
7 TraesCS1D01G072400 chr2D 87.755 294 15 7 1743 2017 98663632 98663923 7.570000e-85 324.0
8 TraesCS1D01G072400 chr3D 90.650 1123 69 17 938 2025 506000163 506001284 0.000000e+00 1459.0
9 TraesCS1D01G072400 chr3D 98.898 635 7 0 2 636 491628388 491627754 0.000000e+00 1134.0
10 TraesCS1D01G072400 chr7D 91.313 1059 68 5 947 1983 132759201 132758145 0.000000e+00 1424.0
11 TraesCS1D01G072400 chr7D 98.750 640 7 1 2 640 101142342 101141703 0.000000e+00 1136.0
12 TraesCS1D01G072400 chr7D 98.589 638 9 0 2 639 224463109 224462472 0.000000e+00 1129.0
13 TraesCS1D01G072400 chr7A 90.353 1078 71 19 988 2035 342612705 342611631 0.000000e+00 1384.0
14 TraesCS1D01G072400 chr7A 89.602 1106 68 20 965 2036 53732034 53730942 0.000000e+00 1362.0
15 TraesCS1D01G072400 chr7A 82.090 201 17 10 1837 2025 662730930 662730737 1.050000e-33 154.0
16 TraesCS1D01G072400 chr6B 89.008 1119 81 12 942 2025 34081375 34080264 0.000000e+00 1347.0
17 TraesCS1D01G072400 chr6A 87.993 1116 100 12 947 2029 594297463 594298577 0.000000e+00 1288.0
18 TraesCS1D01G072400 chr2B 87.822 1125 98 19 939 2028 158044843 158043723 0.000000e+00 1282.0
19 TraesCS1D01G072400 chr2B 88.598 1070 96 13 931 1979 67075057 67073993 0.000000e+00 1277.0
20 TraesCS1D01G072400 chr2B 79.847 392 54 18 1655 2025 774123341 774122954 1.670000e-66 263.0
21 TraesCS1D01G072400 chr4A 90.661 953 72 8 944 1885 602367491 602366545 0.000000e+00 1251.0
22 TraesCS1D01G072400 chr4D 98.748 639 8 0 2 640 488033043 488033681 0.000000e+00 1136.0
23 TraesCS1D01G072400 chr6D 98.140 645 12 0 2 646 290252655 290253299 0.000000e+00 1125.0
24 TraesCS1D01G072400 chr5D 87.075 441 33 14 1605 2026 185190300 185190735 5.490000e-131 477.0
25 TraesCS1D01G072400 chr5D 82.114 369 39 17 1676 2025 437049978 437050338 7.680000e-75 291.0
26 TraesCS1D01G072400 chr5A 84.103 390 42 13 1655 2025 477705922 477705534 2.070000e-95 359.0
27 TraesCS1D01G072400 chr1A 91.506 259 18 2 637 891 52519519 52519777 9.650000e-94 353.0
28 TraesCS1D01G072400 chr1A 86.154 130 14 2 2035 2161 52519766 52519894 1.060000e-28 137.0
29 TraesCS1D01G072400 chr5B 77.206 408 49 20 1653 2025 623146540 623146938 4.790000e-47 198.0
30 TraesCS1D01G072400 chr5B 77.206 408 49 21 1653 2025 626811242 626811640 4.790000e-47 198.0
31 TraesCS1D01G072400 chr3B 90.090 111 10 1 2035 2145 672762435 672762544 2.270000e-30 143.0
32 TraesCS1D01G072400 chr3B 74.092 413 67 24 1666 2049 775071146 775070745 1.370000e-27 134.0
33 TraesCS1D01G072400 chr3B 93.750 64 1 3 1983 2043 825826339 825826402 2.320000e-15 93.5
34 TraesCS1D01G072400 chr1B 86.364 132 12 3 637 767 84562002 84562128 2.940000e-29 139.0
35 TraesCS1D01G072400 chr1B 86.364 132 12 4 2035 2161 84562353 84562483 2.940000e-29 139.0
36 TraesCS1D01G072400 chr2A 80.583 103 4 7 928 1030 765042693 765042607 5.070000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G072400 chr1D 52716364 52718561 2197 False 4060 4060 100.000 1 2198 1 chr1D.!!$F1 2197
1 TraesCS1D01G072400 chr1D 155878215 155878851 636 False 1133 1133 98.744 2 638 1 chr1D.!!$F3 636
2 TraesCS1D01G072400 chr1D 41437741 41438376 635 True 1131 1131 98.742 2 637 1 chr1D.!!$R1 635
3 TraesCS1D01G072400 chr1D 460320559 460321194 635 False 1131 1131 98.744 2 638 1 chr1D.!!$F4 636
4 TraesCS1D01G072400 chr1D 488830257 488830894 637 False 1129 1129 98.589 2 639 1 chr1D.!!$F5 637
5 TraesCS1D01G072400 chr2D 607135046 607136116 1070 True 1480 1480 92.078 984 2025 1 chr2D.!!$R1 1041
6 TraesCS1D01G072400 chr3D 506000163 506001284 1121 False 1459 1459 90.650 938 2025 1 chr3D.!!$F1 1087
7 TraesCS1D01G072400 chr3D 491627754 491628388 634 True 1134 1134 98.898 2 636 1 chr3D.!!$R1 634
8 TraesCS1D01G072400 chr7D 132758145 132759201 1056 True 1424 1424 91.313 947 1983 1 chr7D.!!$R2 1036
9 TraesCS1D01G072400 chr7D 101141703 101142342 639 True 1136 1136 98.750 2 640 1 chr7D.!!$R1 638
10 TraesCS1D01G072400 chr7D 224462472 224463109 637 True 1129 1129 98.589 2 639 1 chr7D.!!$R3 637
11 TraesCS1D01G072400 chr7A 342611631 342612705 1074 True 1384 1384 90.353 988 2035 1 chr7A.!!$R2 1047
12 TraesCS1D01G072400 chr7A 53730942 53732034 1092 True 1362 1362 89.602 965 2036 1 chr7A.!!$R1 1071
13 TraesCS1D01G072400 chr6B 34080264 34081375 1111 True 1347 1347 89.008 942 2025 1 chr6B.!!$R1 1083
14 TraesCS1D01G072400 chr6A 594297463 594298577 1114 False 1288 1288 87.993 947 2029 1 chr6A.!!$F1 1082
15 TraesCS1D01G072400 chr2B 158043723 158044843 1120 True 1282 1282 87.822 939 2028 1 chr2B.!!$R2 1089
16 TraesCS1D01G072400 chr2B 67073993 67075057 1064 True 1277 1277 88.598 931 1979 1 chr2B.!!$R1 1048
17 TraesCS1D01G072400 chr4A 602366545 602367491 946 True 1251 1251 90.661 944 1885 1 chr4A.!!$R1 941
18 TraesCS1D01G072400 chr4D 488033043 488033681 638 False 1136 1136 98.748 2 640 1 chr4D.!!$F1 638
19 TraesCS1D01G072400 chr6D 290252655 290253299 644 False 1125 1125 98.140 2 646 1 chr6D.!!$F1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 654 0.250727 TTCACTTTGCCTTCTCCCGG 60.251 55.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1755 0.393537 GCCATCTTCCACTGGTCCAG 60.394 60.0 17.88 17.88 37.52 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 214 2.176045 TCTGGATTCGGCAGTTACTCA 58.824 47.619 0.00 0.00 0.00 3.41
285 287 5.129320 ACATATCAGCAGTCTACATGACCAA 59.871 40.000 0.00 0.00 46.46 3.67
456 458 5.705441 AGCCGTTTCAAGATATCTGTTTCAA 59.295 36.000 5.86 0.00 0.00 2.69
493 495 3.573491 GCCGTTGATACTGCGGGC 61.573 66.667 0.00 0.00 45.02 6.13
646 649 2.936202 TCAGCTTTCACTTTGCCTTCT 58.064 42.857 0.00 0.00 0.00 2.85
647 650 2.880890 TCAGCTTTCACTTTGCCTTCTC 59.119 45.455 0.00 0.00 0.00 2.87
648 651 2.030451 CAGCTTTCACTTTGCCTTCTCC 60.030 50.000 0.00 0.00 0.00 3.71
649 652 1.270826 GCTTTCACTTTGCCTTCTCCC 59.729 52.381 0.00 0.00 0.00 4.30
650 653 1.537202 CTTTCACTTTGCCTTCTCCCG 59.463 52.381 0.00 0.00 0.00 5.14
651 654 0.250727 TTCACTTTGCCTTCTCCCGG 60.251 55.000 0.00 0.00 0.00 5.73
652 655 1.675641 CACTTTGCCTTCTCCCGGG 60.676 63.158 16.85 16.85 0.00 5.73
653 656 2.044946 CTTTGCCTTCTCCCGGGG 60.045 66.667 23.50 12.05 0.00 5.73
654 657 2.530661 TTTGCCTTCTCCCGGGGA 60.531 61.111 23.50 16.55 0.00 4.81
655 658 1.926426 CTTTGCCTTCTCCCGGGGAT 61.926 60.000 23.50 0.00 0.00 3.85
656 659 2.210144 TTTGCCTTCTCCCGGGGATG 62.210 60.000 23.50 17.66 0.00 3.51
657 660 4.570874 GCCTTCTCCCGGGGATGC 62.571 72.222 23.50 17.36 0.00 3.91
658 661 3.878667 CCTTCTCCCGGGGATGCC 61.879 72.222 23.50 0.00 0.00 4.40
659 662 3.089874 CTTCTCCCGGGGATGCCA 61.090 66.667 23.50 0.00 0.00 4.92
660 663 2.612430 TTCTCCCGGGGATGCCAA 60.612 61.111 23.50 4.55 0.00 4.52
661 664 1.999634 CTTCTCCCGGGGATGCCAAT 62.000 60.000 23.50 0.00 0.00 3.16
662 665 1.994885 TTCTCCCGGGGATGCCAATC 61.995 60.000 23.50 0.00 0.00 2.67
663 666 2.368192 TCCCGGGGATGCCAATCT 60.368 61.111 23.50 0.00 32.95 2.40
664 667 2.113986 CCCGGGGATGCCAATCTC 59.886 66.667 14.71 0.00 32.95 2.75
665 668 2.455565 CCCGGGGATGCCAATCTCT 61.456 63.158 14.71 0.00 33.35 3.10
666 669 1.533711 CCGGGGATGCCAATCTCTT 59.466 57.895 5.30 0.00 33.35 2.85
667 670 0.764890 CCGGGGATGCCAATCTCTTA 59.235 55.000 5.30 0.00 33.35 2.10
668 671 1.142870 CCGGGGATGCCAATCTCTTAA 59.857 52.381 5.30 0.00 33.35 1.85
669 672 2.422803 CCGGGGATGCCAATCTCTTAAA 60.423 50.000 5.30 0.00 33.35 1.52
670 673 2.618709 CGGGGATGCCAATCTCTTAAAC 59.381 50.000 5.30 0.00 33.35 2.01
671 674 3.685550 CGGGGATGCCAATCTCTTAAACT 60.686 47.826 5.30 0.00 33.35 2.66
672 675 3.885901 GGGGATGCCAATCTCTTAAACTC 59.114 47.826 5.30 0.00 33.35 3.01
673 676 4.526970 GGGATGCCAATCTCTTAAACTCA 58.473 43.478 0.00 0.00 32.95 3.41
674 677 4.949856 GGGATGCCAATCTCTTAAACTCAA 59.050 41.667 0.00 0.00 32.95 3.02
675 678 5.163612 GGGATGCCAATCTCTTAAACTCAAC 60.164 44.000 0.00 0.00 32.95 3.18
676 679 5.415701 GGATGCCAATCTCTTAAACTCAACA 59.584 40.000 0.00 0.00 32.95 3.33
677 680 6.071952 GGATGCCAATCTCTTAAACTCAACAA 60.072 38.462 0.00 0.00 32.95 2.83
678 681 6.072112 TGCCAATCTCTTAAACTCAACAAC 57.928 37.500 0.00 0.00 0.00 3.32
679 682 5.827797 TGCCAATCTCTTAAACTCAACAACT 59.172 36.000 0.00 0.00 0.00 3.16
680 683 6.995686 TGCCAATCTCTTAAACTCAACAACTA 59.004 34.615 0.00 0.00 0.00 2.24
681 684 7.500892 TGCCAATCTCTTAAACTCAACAACTAA 59.499 33.333 0.00 0.00 0.00 2.24
682 685 7.803659 GCCAATCTCTTAAACTCAACAACTAAC 59.196 37.037 0.00 0.00 0.00 2.34
683 686 9.057089 CCAATCTCTTAAACTCAACAACTAACT 57.943 33.333 0.00 0.00 0.00 2.24
684 687 9.869844 CAATCTCTTAAACTCAACAACTAACTG 57.130 33.333 0.00 0.00 0.00 3.16
685 688 7.478520 TCTCTTAAACTCAACAACTAACTGC 57.521 36.000 0.00 0.00 0.00 4.40
686 689 6.200286 TCTCTTAAACTCAACAACTAACTGCG 59.800 38.462 0.00 0.00 0.00 5.18
687 690 6.044046 TCTTAAACTCAACAACTAACTGCGA 58.956 36.000 0.00 0.00 0.00 5.10
688 691 6.535865 TCTTAAACTCAACAACTAACTGCGAA 59.464 34.615 0.00 0.00 0.00 4.70
689 692 5.554822 AAACTCAACAACTAACTGCGAAA 57.445 34.783 0.00 0.00 0.00 3.46
690 693 5.751243 AACTCAACAACTAACTGCGAAAT 57.249 34.783 0.00 0.00 0.00 2.17
691 694 5.095691 ACTCAACAACTAACTGCGAAATG 57.904 39.130 0.00 0.00 0.00 2.32
692 695 4.574828 ACTCAACAACTAACTGCGAAATGT 59.425 37.500 0.00 0.00 0.00 2.71
693 696 5.065988 ACTCAACAACTAACTGCGAAATGTT 59.934 36.000 0.00 0.00 0.00 2.71
694 697 5.885881 TCAACAACTAACTGCGAAATGTTT 58.114 33.333 0.00 0.00 0.00 2.83
695 698 6.326375 TCAACAACTAACTGCGAAATGTTTT 58.674 32.000 0.00 0.00 0.00 2.43
696 699 6.252441 TCAACAACTAACTGCGAAATGTTTTG 59.748 34.615 0.00 0.00 0.00 2.44
697 700 4.502645 ACAACTAACTGCGAAATGTTTTGC 59.497 37.500 10.14 10.14 45.66 3.68
698 701 4.568152 ACTAACTGCGAAATGTTTTGCT 57.432 36.364 16.33 2.31 45.65 3.91
699 702 4.290155 ACTAACTGCGAAATGTTTTGCTG 58.710 39.130 17.74 17.74 45.65 4.41
700 703 3.435105 AACTGCGAAATGTTTTGCTGA 57.565 38.095 23.16 5.08 45.65 4.26
701 704 3.435105 ACTGCGAAATGTTTTGCTGAA 57.565 38.095 23.16 4.51 45.65 3.02
702 705 3.115554 ACTGCGAAATGTTTTGCTGAAC 58.884 40.909 23.16 0.00 45.65 3.18
703 706 2.468831 TGCGAAATGTTTTGCTGAACC 58.531 42.857 16.33 0.00 45.65 3.62
704 707 2.100584 TGCGAAATGTTTTGCTGAACCT 59.899 40.909 16.33 0.00 45.65 3.50
705 708 3.123050 GCGAAATGTTTTGCTGAACCTT 58.877 40.909 9.86 0.00 42.86 3.50
706 709 3.060339 GCGAAATGTTTTGCTGAACCTTG 60.060 43.478 9.86 0.00 42.86 3.61
707 710 3.490526 CGAAATGTTTTGCTGAACCTTGG 59.509 43.478 1.28 0.00 0.00 3.61
708 711 4.692228 GAAATGTTTTGCTGAACCTTGGA 58.308 39.130 0.00 0.00 0.00 3.53
709 712 3.733443 ATGTTTTGCTGAACCTTGGAC 57.267 42.857 0.00 0.00 0.00 4.02
710 713 2.451490 TGTTTTGCTGAACCTTGGACA 58.549 42.857 0.00 0.00 0.00 4.02
711 714 2.426738 TGTTTTGCTGAACCTTGGACAG 59.573 45.455 11.61 11.61 35.14 3.51
712 715 2.427095 GTTTTGCTGAACCTTGGACAGT 59.573 45.455 15.07 0.00 34.60 3.55
713 716 2.435372 TTGCTGAACCTTGGACAGTT 57.565 45.000 15.07 0.00 34.60 3.16
714 717 3.569194 TTGCTGAACCTTGGACAGTTA 57.431 42.857 15.07 6.88 34.60 2.24
715 718 3.569194 TGCTGAACCTTGGACAGTTAA 57.431 42.857 15.07 4.78 34.60 2.01
716 719 3.892284 TGCTGAACCTTGGACAGTTAAA 58.108 40.909 15.07 3.18 34.60 1.52
717 720 3.630312 TGCTGAACCTTGGACAGTTAAAC 59.370 43.478 15.07 0.00 34.60 2.01
718 721 3.004419 GCTGAACCTTGGACAGTTAAACC 59.996 47.826 15.07 0.00 34.60 3.27
719 722 4.461198 CTGAACCTTGGACAGTTAAACCT 58.539 43.478 0.00 0.00 0.00 3.50
720 723 4.457466 TGAACCTTGGACAGTTAAACCTC 58.543 43.478 0.00 0.00 0.00 3.85
721 724 3.121738 ACCTTGGACAGTTAAACCTCG 57.878 47.619 0.00 0.00 0.00 4.63
722 725 2.224450 ACCTTGGACAGTTAAACCTCGG 60.224 50.000 0.00 0.00 0.00 4.63
723 726 2.224450 CCTTGGACAGTTAAACCTCGGT 60.224 50.000 0.00 0.00 0.00 4.69
724 727 3.473625 CTTGGACAGTTAAACCTCGGTT 58.526 45.455 0.00 0.00 40.45 4.44
725 728 3.116079 TGGACAGTTAAACCTCGGTTC 57.884 47.619 1.16 0.00 37.35 3.62
726 729 2.435069 TGGACAGTTAAACCTCGGTTCA 59.565 45.455 1.16 0.00 37.35 3.18
727 730 3.064931 GGACAGTTAAACCTCGGTTCAG 58.935 50.000 1.16 0.00 37.35 3.02
728 731 2.479275 GACAGTTAAACCTCGGTTCAGC 59.521 50.000 1.16 0.00 37.35 4.26
729 732 2.104281 ACAGTTAAACCTCGGTTCAGCT 59.896 45.455 1.16 0.00 37.35 4.24
730 733 3.322828 ACAGTTAAACCTCGGTTCAGCTA 59.677 43.478 1.16 0.00 37.35 3.32
731 734 4.020485 ACAGTTAAACCTCGGTTCAGCTAT 60.020 41.667 1.16 0.00 37.35 2.97
732 735 5.186409 ACAGTTAAACCTCGGTTCAGCTATA 59.814 40.000 1.16 0.00 37.35 1.31
733 736 5.519206 CAGTTAAACCTCGGTTCAGCTATAC 59.481 44.000 1.16 0.00 37.35 1.47
734 737 3.538634 AAACCTCGGTTCAGCTATACC 57.461 47.619 1.16 6.39 37.35 2.73
735 738 2.154567 ACCTCGGTTCAGCTATACCA 57.845 50.000 14.74 3.83 33.94 3.25
736 739 2.463752 ACCTCGGTTCAGCTATACCAA 58.536 47.619 14.74 0.00 33.94 3.67
737 740 2.167900 ACCTCGGTTCAGCTATACCAAC 59.832 50.000 14.74 1.41 33.94 3.77
738 741 2.167693 CCTCGGTTCAGCTATACCAACA 59.832 50.000 14.74 0.30 33.94 3.33
739 742 3.181465 CCTCGGTTCAGCTATACCAACAT 60.181 47.826 14.74 0.00 33.94 2.71
740 743 3.792401 TCGGTTCAGCTATACCAACATG 58.208 45.455 14.74 0.00 33.94 3.21
741 744 3.196901 TCGGTTCAGCTATACCAACATGT 59.803 43.478 14.74 0.00 33.94 3.21
742 745 3.555956 CGGTTCAGCTATACCAACATGTC 59.444 47.826 14.74 0.00 33.94 3.06
743 746 4.680708 CGGTTCAGCTATACCAACATGTCT 60.681 45.833 14.74 0.00 33.94 3.41
744 747 4.811557 GGTTCAGCTATACCAACATGTCTC 59.188 45.833 0.00 0.00 34.48 3.36
745 748 5.419542 GTTCAGCTATACCAACATGTCTCA 58.580 41.667 0.00 0.00 0.00 3.27
746 749 5.011090 TCAGCTATACCAACATGTCTCAC 57.989 43.478 0.00 0.00 0.00 3.51
747 750 4.122776 CAGCTATACCAACATGTCTCACC 58.877 47.826 0.00 0.00 0.00 4.02
748 751 3.774766 AGCTATACCAACATGTCTCACCA 59.225 43.478 0.00 0.00 0.00 4.17
749 752 4.410228 AGCTATACCAACATGTCTCACCAT 59.590 41.667 0.00 0.00 0.00 3.55
750 753 4.752101 GCTATACCAACATGTCTCACCATC 59.248 45.833 0.00 0.00 0.00 3.51
751 754 2.099141 ACCAACATGTCTCACCATCG 57.901 50.000 0.00 0.00 0.00 3.84
752 755 1.347707 ACCAACATGTCTCACCATCGT 59.652 47.619 0.00 0.00 0.00 3.73
753 756 1.733912 CCAACATGTCTCACCATCGTG 59.266 52.381 0.00 0.00 41.72 4.35
754 757 2.416747 CAACATGTCTCACCATCGTGT 58.583 47.619 0.00 0.00 41.09 4.49
755 758 3.584834 CAACATGTCTCACCATCGTGTA 58.415 45.455 0.00 0.00 41.09 2.90
756 759 3.953712 ACATGTCTCACCATCGTGTAA 57.046 42.857 0.00 0.00 41.09 2.41
757 760 3.849911 ACATGTCTCACCATCGTGTAAG 58.150 45.455 0.00 0.00 41.09 2.34
758 761 2.363788 TGTCTCACCATCGTGTAAGC 57.636 50.000 0.00 0.00 41.09 3.09
759 762 1.616374 TGTCTCACCATCGTGTAAGCA 59.384 47.619 0.00 0.00 41.09 3.91
760 763 2.263077 GTCTCACCATCGTGTAAGCAG 58.737 52.381 0.00 0.00 41.09 4.24
761 764 1.893137 TCTCACCATCGTGTAAGCAGT 59.107 47.619 0.00 0.00 41.09 4.40
762 765 3.086282 TCTCACCATCGTGTAAGCAGTA 58.914 45.455 0.00 0.00 41.09 2.74
763 766 3.508402 TCTCACCATCGTGTAAGCAGTAA 59.492 43.478 0.00 0.00 41.09 2.24
764 767 3.845178 TCACCATCGTGTAAGCAGTAAG 58.155 45.455 0.00 0.00 41.09 2.34
765 768 2.348666 CACCATCGTGTAAGCAGTAAGC 59.651 50.000 0.00 0.00 38.22 3.09
766 769 4.167140 CACCATCGTGTAAGCAGTAAGCA 61.167 47.826 0.00 0.00 39.53 3.91
767 770 5.957092 CACCATCGTGTAAGCAGTAAGCAG 61.957 50.000 0.00 0.00 39.53 4.24
769 772 8.980333 CACCATCGTGTAAGCAGTAAGCAGTA 62.980 46.154 0.00 0.00 39.53 2.74
783 786 7.113658 AGTAAGCAGTACTGTACATTATGCT 57.886 36.000 23.44 20.30 41.75 3.79
784 787 8.234136 AGTAAGCAGTACTGTACATTATGCTA 57.766 34.615 23.94 14.14 41.75 3.49
785 788 8.353684 AGTAAGCAGTACTGTACATTATGCTAG 58.646 37.037 23.94 0.31 41.75 3.42
786 789 5.533482 AGCAGTACTGTACATTATGCTAGC 58.467 41.667 22.98 8.10 40.52 3.42
787 790 5.303078 AGCAGTACTGTACATTATGCTAGCT 59.697 40.000 22.98 13.26 40.52 3.32
788 791 5.403766 GCAGTACTGTACATTATGCTAGCTG 59.596 44.000 23.44 8.25 0.00 4.24
789 792 6.507900 CAGTACTGTACATTATGCTAGCTGT 58.492 40.000 17.23 14.00 0.00 4.40
790 793 6.638873 CAGTACTGTACATTATGCTAGCTGTC 59.361 42.308 17.23 6.77 0.00 3.51
791 794 5.598416 ACTGTACATTATGCTAGCTGTCA 57.402 39.130 17.23 10.46 0.00 3.58
792 795 5.352284 ACTGTACATTATGCTAGCTGTCAC 58.648 41.667 17.23 10.65 0.00 3.67
793 796 5.127845 ACTGTACATTATGCTAGCTGTCACT 59.872 40.000 17.23 0.00 0.00 3.41
794 797 5.592054 TGTACATTATGCTAGCTGTCACTC 58.408 41.667 17.23 4.75 0.00 3.51
795 798 5.360999 TGTACATTATGCTAGCTGTCACTCT 59.639 40.000 17.23 0.00 0.00 3.24
796 799 4.942852 ACATTATGCTAGCTGTCACTCTC 58.057 43.478 17.23 0.00 0.00 3.20
797 800 4.648762 ACATTATGCTAGCTGTCACTCTCT 59.351 41.667 17.23 0.00 0.00 3.10
798 801 4.909696 TTATGCTAGCTGTCACTCTCTC 57.090 45.455 17.23 0.00 0.00 3.20
799 802 1.468985 TGCTAGCTGTCACTCTCTCC 58.531 55.000 17.23 0.00 0.00 3.71
800 803 1.005332 TGCTAGCTGTCACTCTCTCCT 59.995 52.381 17.23 0.00 0.00 3.69
801 804 2.099405 GCTAGCTGTCACTCTCTCCTT 58.901 52.381 7.70 0.00 0.00 3.36
802 805 2.099098 GCTAGCTGTCACTCTCTCCTTC 59.901 54.545 7.70 0.00 0.00 3.46
803 806 1.555967 AGCTGTCACTCTCTCCTTCC 58.444 55.000 0.00 0.00 0.00 3.46
804 807 1.077005 AGCTGTCACTCTCTCCTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
805 808 1.476488 GCTGTCACTCTCTCCTTCCTC 59.524 57.143 0.00 0.00 0.00 3.71
806 809 2.099405 CTGTCACTCTCTCCTTCCTCC 58.901 57.143 0.00 0.00 0.00 4.30
807 810 1.429299 TGTCACTCTCTCCTTCCTCCA 59.571 52.381 0.00 0.00 0.00 3.86
808 811 2.043664 TGTCACTCTCTCCTTCCTCCAT 59.956 50.000 0.00 0.00 0.00 3.41
809 812 2.693074 GTCACTCTCTCCTTCCTCCATC 59.307 54.545 0.00 0.00 0.00 3.51
810 813 2.584965 TCACTCTCTCCTTCCTCCATCT 59.415 50.000 0.00 0.00 0.00 2.90
811 814 2.958355 CACTCTCTCCTTCCTCCATCTC 59.042 54.545 0.00 0.00 0.00 2.75
812 815 2.091333 ACTCTCTCCTTCCTCCATCTCC 60.091 54.545 0.00 0.00 0.00 3.71
813 816 2.177669 CTCTCTCCTTCCTCCATCTCCT 59.822 54.545 0.00 0.00 0.00 3.69
814 817 2.176798 TCTCTCCTTCCTCCATCTCCTC 59.823 54.545 0.00 0.00 0.00 3.71
815 818 2.177669 CTCTCCTTCCTCCATCTCCTCT 59.822 54.545 0.00 0.00 0.00 3.69
816 819 3.397618 CTCTCCTTCCTCCATCTCCTCTA 59.602 52.174 0.00 0.00 0.00 2.43
817 820 3.397618 TCTCCTTCCTCCATCTCCTCTAG 59.602 52.174 0.00 0.00 0.00 2.43
818 821 3.397618 CTCCTTCCTCCATCTCCTCTAGA 59.602 52.174 0.00 0.00 39.02 2.43
819 822 3.794399 TCCTTCCTCCATCTCCTCTAGAA 59.206 47.826 0.00 0.00 37.89 2.10
820 823 4.233053 TCCTTCCTCCATCTCCTCTAGAAA 59.767 45.833 0.00 0.00 37.89 2.52
821 824 4.965532 CCTTCCTCCATCTCCTCTAGAAAA 59.034 45.833 0.00 0.00 37.89 2.29
822 825 5.163353 CCTTCCTCCATCTCCTCTAGAAAAC 60.163 48.000 0.00 0.00 37.89 2.43
823 826 5.213868 TCCTCCATCTCCTCTAGAAAACT 57.786 43.478 0.00 0.00 37.89 2.66
824 827 6.342819 TCCTCCATCTCCTCTAGAAAACTA 57.657 41.667 0.00 0.00 37.89 2.24
825 828 6.928202 TCCTCCATCTCCTCTAGAAAACTAT 58.072 40.000 0.00 0.00 37.89 2.12
826 829 8.058405 TCCTCCATCTCCTCTAGAAAACTATA 57.942 38.462 0.00 0.00 37.89 1.31
827 830 8.511969 TCCTCCATCTCCTCTAGAAAACTATAA 58.488 37.037 0.00 0.00 37.89 0.98
828 831 8.581578 CCTCCATCTCCTCTAGAAAACTATAAC 58.418 40.741 0.00 0.00 37.89 1.89
829 832 8.480133 TCCATCTCCTCTAGAAAACTATAACC 57.520 38.462 0.00 0.00 37.89 2.85
830 833 8.065627 TCCATCTCCTCTAGAAAACTATAACCA 58.934 37.037 0.00 0.00 37.89 3.67
831 834 8.705594 CCATCTCCTCTAGAAAACTATAACCAA 58.294 37.037 0.00 0.00 37.89 3.67
832 835 9.535878 CATCTCCTCTAGAAAACTATAACCAAC 57.464 37.037 0.00 0.00 37.89 3.77
833 836 8.660295 TCTCCTCTAGAAAACTATAACCAACA 57.340 34.615 0.00 0.00 0.00 3.33
834 837 9.268282 TCTCCTCTAGAAAACTATAACCAACAT 57.732 33.333 0.00 0.00 0.00 2.71
847 850 9.582648 ACTATAACCAACATAAACTCAAAAGGT 57.417 29.630 0.00 0.00 0.00 3.50
850 853 7.841915 AACCAACATAAACTCAAAAGGTTTG 57.158 32.000 0.00 0.00 37.45 2.93
851 854 5.815222 ACCAACATAAACTCAAAAGGTTTGC 59.185 36.000 0.00 0.00 37.45 3.68
852 855 5.814705 CCAACATAAACTCAAAAGGTTTGCA 59.185 36.000 0.00 0.00 37.45 4.08
853 856 6.018832 CCAACATAAACTCAAAAGGTTTGCAG 60.019 38.462 0.00 0.00 37.45 4.41
854 857 5.049828 ACATAAACTCAAAAGGTTTGCAGC 58.950 37.500 0.00 0.00 37.45 5.25
855 858 2.208326 AACTCAAAAGGTTTGCAGCG 57.792 45.000 0.00 0.00 0.00 5.18
856 859 1.388547 ACTCAAAAGGTTTGCAGCGA 58.611 45.000 0.00 0.00 0.00 4.93
857 860 1.334869 ACTCAAAAGGTTTGCAGCGAG 59.665 47.619 0.00 0.00 0.00 5.03
858 861 1.334869 CTCAAAAGGTTTGCAGCGAGT 59.665 47.619 0.00 0.00 0.00 4.18
859 862 2.548057 CTCAAAAGGTTTGCAGCGAGTA 59.452 45.455 0.00 0.00 0.00 2.59
860 863 3.146066 TCAAAAGGTTTGCAGCGAGTAT 58.854 40.909 0.00 0.00 0.00 2.12
861 864 4.320023 TCAAAAGGTTTGCAGCGAGTATA 58.680 39.130 0.00 0.00 0.00 1.47
862 865 4.941263 TCAAAAGGTTTGCAGCGAGTATAT 59.059 37.500 0.00 0.00 0.00 0.86
863 866 4.882671 AAAGGTTTGCAGCGAGTATATG 57.117 40.909 0.00 0.00 0.00 1.78
864 867 3.819564 AGGTTTGCAGCGAGTATATGA 57.180 42.857 0.00 0.00 0.00 2.15
865 868 3.722147 AGGTTTGCAGCGAGTATATGAG 58.278 45.455 0.00 0.00 0.00 2.90
866 869 2.221981 GGTTTGCAGCGAGTATATGAGC 59.778 50.000 0.00 0.00 0.00 4.26
867 870 1.770957 TTGCAGCGAGTATATGAGCG 58.229 50.000 0.00 0.00 34.34 5.03
868 871 0.668535 TGCAGCGAGTATATGAGCGT 59.331 50.000 0.00 0.00 34.34 5.07
869 872 1.067060 TGCAGCGAGTATATGAGCGTT 59.933 47.619 0.00 0.00 34.34 4.84
870 873 1.716581 GCAGCGAGTATATGAGCGTTC 59.283 52.381 0.00 0.00 34.34 3.95
871 874 2.605823 GCAGCGAGTATATGAGCGTTCT 60.606 50.000 0.00 0.00 34.34 3.01
872 875 2.976509 CAGCGAGTATATGAGCGTTCTG 59.023 50.000 0.00 0.00 34.34 3.02
873 876 1.716581 GCGAGTATATGAGCGTTCTGC 59.283 52.381 0.00 0.00 46.98 4.26
880 883 1.153765 TGAGCGTTCTGCCGATCAG 60.154 57.895 0.00 0.00 46.93 2.90
881 884 1.877576 TGAGCGTTCTGCCGATCAGT 61.878 55.000 0.00 0.00 46.93 3.41
882 885 3.362265 TGAGCGTTCTGCCGATCAGTT 62.362 52.381 0.00 0.00 46.93 3.16
883 886 1.710339 GCGTTCTGCCGATCAGTTC 59.290 57.895 0.00 0.54 43.32 3.01
884 887 1.014044 GCGTTCTGCCGATCAGTTCA 61.014 55.000 0.00 0.00 43.32 3.18
885 888 0.994995 CGTTCTGCCGATCAGTTCAG 59.005 55.000 0.00 0.00 43.32 3.02
886 889 1.670087 CGTTCTGCCGATCAGTTCAGT 60.670 52.381 0.00 0.00 43.32 3.41
887 890 2.415491 CGTTCTGCCGATCAGTTCAGTA 60.415 50.000 0.00 0.00 43.32 2.74
888 891 3.735208 CGTTCTGCCGATCAGTTCAGTAT 60.735 47.826 0.00 0.00 43.32 2.12
889 892 4.497507 CGTTCTGCCGATCAGTTCAGTATA 60.498 45.833 0.00 0.00 43.32 1.47
890 893 5.533482 GTTCTGCCGATCAGTTCAGTATAT 58.467 41.667 0.00 0.00 43.32 0.86
891 894 5.791336 TCTGCCGATCAGTTCAGTATATT 57.209 39.130 0.00 0.00 43.32 1.28
892 895 6.161855 TCTGCCGATCAGTTCAGTATATTT 57.838 37.500 0.00 0.00 43.32 1.40
893 896 5.985530 TCTGCCGATCAGTTCAGTATATTTG 59.014 40.000 0.00 0.00 43.32 2.32
894 897 5.056480 TGCCGATCAGTTCAGTATATTTGG 58.944 41.667 0.00 0.00 0.00 3.28
895 898 5.163353 TGCCGATCAGTTCAGTATATTTGGA 60.163 40.000 0.00 0.00 0.00 3.53
896 899 5.406780 GCCGATCAGTTCAGTATATTTGGAG 59.593 44.000 0.00 0.00 0.00 3.86
897 900 5.928839 CCGATCAGTTCAGTATATTTGGAGG 59.071 44.000 0.00 0.00 0.00 4.30
898 901 5.406780 CGATCAGTTCAGTATATTTGGAGGC 59.593 44.000 0.00 0.00 0.00 4.70
899 902 5.957771 TCAGTTCAGTATATTTGGAGGCT 57.042 39.130 0.00 0.00 0.00 4.58
900 903 5.918608 TCAGTTCAGTATATTTGGAGGCTC 58.081 41.667 5.78 5.78 0.00 4.70
901 904 4.747108 CAGTTCAGTATATTTGGAGGCTCG 59.253 45.833 8.69 0.00 0.00 5.03
902 905 4.406003 AGTTCAGTATATTTGGAGGCTCGT 59.594 41.667 8.69 0.00 0.00 4.18
903 906 4.585955 TCAGTATATTTGGAGGCTCGTC 57.414 45.455 8.69 0.00 0.00 4.20
904 907 3.321111 TCAGTATATTTGGAGGCTCGTCC 59.679 47.826 8.69 1.88 37.10 4.79
905 908 3.069586 CAGTATATTTGGAGGCTCGTCCA 59.930 47.826 8.69 7.17 45.37 4.02
909 912 3.700109 TGGAGGCTCGTCCAGAAG 58.300 61.111 8.69 0.00 41.99 2.85
910 913 1.076727 TGGAGGCTCGTCCAGAAGA 59.923 57.895 8.69 0.00 41.99 2.87
911 914 0.541998 TGGAGGCTCGTCCAGAAGAA 60.542 55.000 8.69 0.00 41.99 2.52
912 915 0.608640 GGAGGCTCGTCCAGAAGAAA 59.391 55.000 8.69 0.00 36.51 2.52
913 916 1.002087 GGAGGCTCGTCCAGAAGAAAA 59.998 52.381 8.69 0.00 36.51 2.29
914 917 2.550208 GGAGGCTCGTCCAGAAGAAAAA 60.550 50.000 8.69 0.00 36.51 1.94
915 918 2.739379 GAGGCTCGTCCAGAAGAAAAAG 59.261 50.000 0.00 0.00 37.29 2.27
916 919 2.368875 AGGCTCGTCCAGAAGAAAAAGA 59.631 45.455 0.00 0.00 37.29 2.52
917 920 3.008485 AGGCTCGTCCAGAAGAAAAAGAT 59.992 43.478 0.00 0.00 37.29 2.40
918 921 3.753797 GGCTCGTCCAGAAGAAAAAGATT 59.246 43.478 0.00 0.00 34.01 2.40
919 922 4.935808 GGCTCGTCCAGAAGAAAAAGATTA 59.064 41.667 0.00 0.00 34.01 1.75
920 923 5.411669 GGCTCGTCCAGAAGAAAAAGATTAA 59.588 40.000 0.00 0.00 34.01 1.40
921 924 6.402658 GGCTCGTCCAGAAGAAAAAGATTAAG 60.403 42.308 0.00 0.00 34.01 1.85
922 925 6.402658 GCTCGTCCAGAAGAAAAAGATTAAGG 60.403 42.308 0.00 0.00 0.00 2.69
923 926 6.765403 TCGTCCAGAAGAAAAAGATTAAGGA 58.235 36.000 0.00 0.00 0.00 3.36
924 927 6.649557 TCGTCCAGAAGAAAAAGATTAAGGAC 59.350 38.462 0.00 0.00 38.66 3.85
925 928 6.128254 CGTCCAGAAGAAAAAGATTAAGGACC 60.128 42.308 0.00 0.00 38.79 4.46
926 929 6.943146 GTCCAGAAGAAAAAGATTAAGGACCT 59.057 38.462 0.00 0.00 36.65 3.85
927 930 7.448777 GTCCAGAAGAAAAAGATTAAGGACCTT 59.551 37.037 12.41 12.41 36.65 3.50
928 931 8.665906 TCCAGAAGAAAAAGATTAAGGACCTTA 58.334 33.333 10.06 10.06 0.00 2.69
929 932 8.951243 CCAGAAGAAAAAGATTAAGGACCTTAG 58.049 37.037 13.65 0.00 0.00 2.18
930 933 8.454894 CAGAAGAAAAAGATTAAGGACCTTAGC 58.545 37.037 13.65 10.31 0.00 3.09
931 934 7.612244 AGAAGAAAAAGATTAAGGACCTTAGCC 59.388 37.037 13.65 9.77 0.00 3.93
932 935 5.880887 AGAAAAAGATTAAGGACCTTAGCCG 59.119 40.000 13.65 0.00 0.00 5.52
933 936 2.912690 AGATTAAGGACCTTAGCCGC 57.087 50.000 13.65 5.57 0.00 6.53
934 937 2.399580 AGATTAAGGACCTTAGCCGCT 58.600 47.619 13.65 0.00 0.00 5.52
935 938 2.365941 AGATTAAGGACCTTAGCCGCTC 59.634 50.000 13.65 7.60 0.00 5.03
936 939 0.828677 TTAAGGACCTTAGCCGCTCC 59.171 55.000 13.65 0.00 0.00 4.70
940 943 1.758906 GACCTTAGCCGCTCCTCCT 60.759 63.158 0.00 0.00 0.00 3.69
960 963 2.283676 TCTTCCCTTCCTCGCCGT 60.284 61.111 0.00 0.00 0.00 5.68
1084 1087 4.781959 CATTGGCAAGGCACGGCG 62.782 66.667 4.80 4.80 34.49 6.46
1264 1268 2.262915 CGCTTCCTCTTGGTCGCT 59.737 61.111 0.00 0.00 34.23 4.93
1568 1581 3.350833 GCCCTATCCTAGCATGGATTTG 58.649 50.000 14.34 8.87 43.79 2.32
1570 1583 3.245016 CCCTATCCTAGCATGGATTTGCA 60.245 47.826 14.34 0.00 43.79 4.08
1600 1613 1.008309 GAGATGGACTCGCGTAGGC 60.008 63.158 5.77 4.20 35.84 3.93
1688 1701 4.696172 CGTCGTTTGGCGTCGTGC 62.696 66.667 0.00 0.00 44.45 5.34
1847 1864 2.914059 GCCTCCGGCTTTAGATGTTAA 58.086 47.619 0.00 0.00 46.69 2.01
2060 2102 8.272866 AGTTTTGTTTATATTCGTTTTTGCAGC 58.727 29.630 0.00 0.00 0.00 5.25
2061 2103 7.938563 TTTGTTTATATTCGTTTTTGCAGCT 57.061 28.000 0.00 0.00 0.00 4.24
2062 2104 7.938563 TTGTTTATATTCGTTTTTGCAGCTT 57.061 28.000 0.00 0.00 0.00 3.74
2063 2105 9.464714 TTTGTTTATATTCGTTTTTGCAGCTTA 57.535 25.926 0.00 0.00 0.00 3.09
2064 2106 8.667987 TGTTTATATTCGTTTTTGCAGCTTAG 57.332 30.769 0.00 0.00 0.00 2.18
2065 2107 7.272515 TGTTTATATTCGTTTTTGCAGCTTAGC 59.727 33.333 0.00 0.00 0.00 3.09
2066 2108 3.923017 ATTCGTTTTTGCAGCTTAGCT 57.077 38.095 0.00 0.00 40.77 3.32
2067 2109 6.677781 ATATTCGTTTTTGCAGCTTAGCTA 57.322 33.333 6.35 0.00 36.40 3.32
2068 2110 4.822036 TTCGTTTTTGCAGCTTAGCTAA 57.178 36.364 6.35 5.94 36.40 3.09
2069 2111 4.822036 TCGTTTTTGCAGCTTAGCTAAA 57.178 36.364 6.35 1.84 36.40 1.85
2070 2112 4.533222 TCGTTTTTGCAGCTTAGCTAAAC 58.467 39.130 16.14 16.14 38.55 2.01
2071 2113 3.668656 CGTTTTTGCAGCTTAGCTAAACC 59.331 43.478 18.74 5.45 38.55 3.27
2072 2114 4.556699 CGTTTTTGCAGCTTAGCTAAACCT 60.557 41.667 18.74 4.19 38.55 3.50
2073 2115 5.334569 CGTTTTTGCAGCTTAGCTAAACCTA 60.335 40.000 18.74 0.00 38.55 3.08
2074 2116 5.880054 TTTTGCAGCTTAGCTAAACCTAG 57.120 39.130 6.35 0.00 36.40 3.02
2075 2117 4.553330 TTGCAGCTTAGCTAAACCTAGT 57.447 40.909 6.35 0.00 36.40 2.57
2076 2118 4.553330 TGCAGCTTAGCTAAACCTAGTT 57.447 40.909 6.35 0.00 36.40 2.24
2077 2119 4.906618 TGCAGCTTAGCTAAACCTAGTTT 58.093 39.130 6.35 0.00 36.40 2.66
2078 2120 4.935808 TGCAGCTTAGCTAAACCTAGTTTC 59.064 41.667 6.35 0.00 36.40 2.78
2079 2121 4.935808 GCAGCTTAGCTAAACCTAGTTTCA 59.064 41.667 6.35 0.00 36.40 2.69
2080 2122 5.064071 GCAGCTTAGCTAAACCTAGTTTCAG 59.936 44.000 6.35 0.00 36.40 3.02
2081 2123 6.398918 CAGCTTAGCTAAACCTAGTTTCAGA 58.601 40.000 6.35 0.00 36.40 3.27
2082 2124 6.874134 CAGCTTAGCTAAACCTAGTTTCAGAA 59.126 38.462 6.35 0.00 36.40 3.02
2083 2125 7.387948 CAGCTTAGCTAAACCTAGTTTCAGAAA 59.612 37.037 6.35 0.00 36.40 2.52
2084 2126 7.604545 AGCTTAGCTAAACCTAGTTTCAGAAAG 59.395 37.037 4.30 0.00 36.99 2.62
2085 2127 7.388224 GCTTAGCTAAACCTAGTTTCAGAAAGT 59.612 37.037 7.74 8.34 37.01 2.66
2086 2128 9.274206 CTTAGCTAAACCTAGTTTCAGAAAGTT 57.726 33.333 8.57 0.91 37.01 2.66
2087 2129 7.731882 AGCTAAACCTAGTTTCAGAAAGTTC 57.268 36.000 8.57 0.00 37.01 3.01
2088 2130 7.510407 AGCTAAACCTAGTTTCAGAAAGTTCT 58.490 34.615 8.57 0.00 37.01 3.01
2089 2131 7.993758 AGCTAAACCTAGTTTCAGAAAGTTCTT 59.006 33.333 8.57 1.36 37.01 2.52
2090 2132 8.622157 GCTAAACCTAGTTTCAGAAAGTTCTTT 58.378 33.333 8.57 6.81 37.01 2.52
2091 2133 9.937175 CTAAACCTAGTTTCAGAAAGTTCTTTG 57.063 33.333 8.57 0.00 37.01 2.77
2092 2134 6.378710 ACCTAGTTTCAGAAAGTTCTTTGC 57.621 37.500 8.57 0.00 34.74 3.68
2093 2135 5.885912 ACCTAGTTTCAGAAAGTTCTTTGCA 59.114 36.000 8.57 0.00 34.74 4.08
2094 2136 6.183360 ACCTAGTTTCAGAAAGTTCTTTGCAC 60.183 38.462 8.57 0.00 34.74 4.57
2095 2137 5.643379 AGTTTCAGAAAGTTCTTTGCACA 57.357 34.783 2.38 0.00 34.74 4.57
2096 2138 6.212888 AGTTTCAGAAAGTTCTTTGCACAT 57.787 33.333 2.38 0.00 34.74 3.21
2097 2139 6.268566 AGTTTCAGAAAGTTCTTTGCACATC 58.731 36.000 2.38 0.00 34.74 3.06
2098 2140 6.096001 AGTTTCAGAAAGTTCTTTGCACATCT 59.904 34.615 2.38 0.00 34.74 2.90
2099 2141 6.455360 TTCAGAAAGTTCTTTGCACATCTT 57.545 33.333 2.38 0.00 34.74 2.40
2100 2142 5.824429 TCAGAAAGTTCTTTGCACATCTTG 58.176 37.500 2.38 0.00 34.74 3.02
2101 2143 5.589855 TCAGAAAGTTCTTTGCACATCTTGA 59.410 36.000 2.38 0.00 34.74 3.02
2102 2144 5.684626 CAGAAAGTTCTTTGCACATCTTGAC 59.315 40.000 2.38 0.00 34.74 3.18
2103 2145 5.357878 AGAAAGTTCTTTGCACATCTTGACA 59.642 36.000 2.38 0.00 32.55 3.58
2104 2146 5.779529 AAGTTCTTTGCACATCTTGACAT 57.220 34.783 0.00 0.00 0.00 3.06
2105 2147 5.779529 AGTTCTTTGCACATCTTGACATT 57.220 34.783 0.00 0.00 0.00 2.71
2106 2148 6.152932 AGTTCTTTGCACATCTTGACATTT 57.847 33.333 0.00 0.00 0.00 2.32
2107 2149 6.576185 AGTTCTTTGCACATCTTGACATTTT 58.424 32.000 0.00 0.00 0.00 1.82
2108 2150 6.477688 AGTTCTTTGCACATCTTGACATTTTG 59.522 34.615 0.00 0.00 0.00 2.44
2109 2151 5.904941 TCTTTGCACATCTTGACATTTTGT 58.095 33.333 0.00 0.00 0.00 2.83
2111 2153 4.241590 TGCACATCTTGACATTTTGTCC 57.758 40.909 5.27 0.00 46.40 4.02
2112 2154 3.005684 TGCACATCTTGACATTTTGTCCC 59.994 43.478 5.27 0.00 46.40 4.46
2113 2155 3.005684 GCACATCTTGACATTTTGTCCCA 59.994 43.478 5.27 0.00 46.40 4.37
2114 2156 4.801891 CACATCTTGACATTTTGTCCCAG 58.198 43.478 5.27 2.26 46.40 4.45
2115 2157 4.520111 CACATCTTGACATTTTGTCCCAGA 59.480 41.667 5.27 7.03 46.40 3.86
2116 2158 5.009911 CACATCTTGACATTTTGTCCCAGAA 59.990 40.000 5.27 0.00 46.40 3.02
2117 2159 5.598005 ACATCTTGACATTTTGTCCCAGAAA 59.402 36.000 5.27 0.00 46.40 2.52
2118 2160 6.268387 ACATCTTGACATTTTGTCCCAGAAAT 59.732 34.615 5.27 0.00 46.40 2.17
2119 2161 6.088016 TCTTGACATTTTGTCCCAGAAATG 57.912 37.500 5.27 7.13 46.40 2.32
2125 2167 4.664150 TTTTGTCCCAGAAATGTTCACC 57.336 40.909 0.00 0.00 0.00 4.02
2126 2168 3.304911 TTGTCCCAGAAATGTTCACCA 57.695 42.857 0.00 0.00 0.00 4.17
2127 2169 2.582052 TGTCCCAGAAATGTTCACCAC 58.418 47.619 0.00 0.00 0.00 4.16
2128 2170 1.886542 GTCCCAGAAATGTTCACCACC 59.113 52.381 0.00 0.00 0.00 4.61
2129 2171 1.496857 TCCCAGAAATGTTCACCACCA 59.503 47.619 0.00 0.00 0.00 4.17
2130 2172 2.109834 TCCCAGAAATGTTCACCACCAT 59.890 45.455 0.00 0.00 0.00 3.55
2131 2173 2.899256 CCCAGAAATGTTCACCACCATT 59.101 45.455 0.00 0.00 32.83 3.16
2132 2174 3.324556 CCCAGAAATGTTCACCACCATTT 59.675 43.478 0.00 0.00 42.37 2.32
2133 2175 4.526262 CCCAGAAATGTTCACCACCATTTA 59.474 41.667 0.00 0.00 40.40 1.40
2134 2176 5.469479 CCAGAAATGTTCACCACCATTTAC 58.531 41.667 0.00 0.00 40.40 2.01
2135 2177 5.010516 CCAGAAATGTTCACCACCATTTACA 59.989 40.000 0.00 0.00 40.40 2.41
2136 2178 5.920273 CAGAAATGTTCACCACCATTTACAC 59.080 40.000 0.00 0.00 40.40 2.90
2137 2179 4.497473 AATGTTCACCACCATTTACACG 57.503 40.909 0.00 0.00 0.00 4.49
2138 2180 3.195471 TGTTCACCACCATTTACACGA 57.805 42.857 0.00 0.00 0.00 4.35
2139 2181 3.542648 TGTTCACCACCATTTACACGAA 58.457 40.909 0.00 0.00 0.00 3.85
2140 2182 3.312973 TGTTCACCACCATTTACACGAAC 59.687 43.478 0.00 0.00 33.74 3.95
2141 2183 2.496111 TCACCACCATTTACACGAACC 58.504 47.619 0.00 0.00 0.00 3.62
2142 2184 2.158798 TCACCACCATTTACACGAACCA 60.159 45.455 0.00 0.00 0.00 3.67
2143 2185 2.619177 CACCACCATTTACACGAACCAA 59.381 45.455 0.00 0.00 0.00 3.67
2144 2186 3.254657 CACCACCATTTACACGAACCAAT 59.745 43.478 0.00 0.00 0.00 3.16
2145 2187 3.254657 ACCACCATTTACACGAACCAATG 59.745 43.478 0.00 0.00 0.00 2.82
2146 2188 3.254657 CCACCATTTACACGAACCAATGT 59.745 43.478 0.00 0.00 0.00 2.71
2147 2189 4.261825 CCACCATTTACACGAACCAATGTT 60.262 41.667 0.00 0.00 37.42 2.71
2148 2190 5.285651 CACCATTTACACGAACCAATGTTT 58.714 37.500 0.00 0.00 33.97 2.83
2149 2191 5.174761 CACCATTTACACGAACCAATGTTTG 59.825 40.000 0.00 0.00 41.01 2.93
2164 2206 7.083875 CCAATGTTTGGTGGTATACTAACAG 57.916 40.000 7.07 0.00 45.93 3.16
2165 2207 6.404293 CCAATGTTTGGTGGTATACTAACAGC 60.404 42.308 7.07 5.68 45.93 4.40
2171 2213 5.848833 GGTGGTATACTAACAGCAGTACT 57.151 43.478 2.25 0.00 43.09 2.73
2172 2214 6.949352 GGTGGTATACTAACAGCAGTACTA 57.051 41.667 2.25 0.00 43.09 1.82
2173 2215 7.338800 GGTGGTATACTAACAGCAGTACTAA 57.661 40.000 2.25 0.00 43.09 2.24
2174 2216 7.424001 GGTGGTATACTAACAGCAGTACTAAG 58.576 42.308 2.25 0.00 43.09 2.18
2175 2217 7.284034 GGTGGTATACTAACAGCAGTACTAAGA 59.716 40.741 2.25 0.00 43.09 2.10
2176 2218 8.848182 GTGGTATACTAACAGCAGTACTAAGAT 58.152 37.037 2.25 0.00 33.94 2.40
2177 2219 8.847196 TGGTATACTAACAGCAGTACTAAGATG 58.153 37.037 2.25 0.00 33.94 2.90
2178 2220 9.064706 GGTATACTAACAGCAGTACTAAGATGA 57.935 37.037 5.56 0.00 33.94 2.92
2180 2222 8.982091 ATACTAACAGCAGTACTAAGATGAGA 57.018 34.615 5.56 0.00 33.94 3.27
2181 2223 7.889873 ACTAACAGCAGTACTAAGATGAGAT 57.110 36.000 5.56 0.00 0.00 2.75
2182 2224 7.711846 ACTAACAGCAGTACTAAGATGAGATG 58.288 38.462 5.56 0.00 0.00 2.90
2183 2225 4.942852 ACAGCAGTACTAAGATGAGATGC 58.057 43.478 5.56 0.00 0.00 3.91
2184 2226 4.403752 ACAGCAGTACTAAGATGAGATGCA 59.596 41.667 5.56 0.00 34.93 3.96
2185 2227 5.105187 ACAGCAGTACTAAGATGAGATGCAA 60.105 40.000 5.56 0.00 34.93 4.08
2186 2228 5.814188 CAGCAGTACTAAGATGAGATGCAAA 59.186 40.000 0.00 0.00 34.93 3.68
2187 2229 6.314648 CAGCAGTACTAAGATGAGATGCAAAA 59.685 38.462 0.00 0.00 34.93 2.44
2188 2230 6.881065 AGCAGTACTAAGATGAGATGCAAAAA 59.119 34.615 0.00 0.00 34.93 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.763651 GCGGTAAGCGAGTTTGGAT 58.236 52.632 0.00 0.00 35.41 3.41
212 214 1.414158 ATAGGCATGTGTAGCTCGGT 58.586 50.000 0.00 0.00 0.00 4.69
285 287 2.218603 GTCGGTGTTGAACTGGATTGT 58.781 47.619 0.00 0.00 35.67 2.71
456 458 1.136984 GGCTCGACGACGTTGAGAT 59.863 57.895 37.78 0.89 44.44 2.75
493 495 6.982852 ACCATAATGACTACTCTAACATCCG 58.017 40.000 0.00 0.00 0.00 4.18
646 649 2.368192 AGATTGGCATCCCCGGGA 60.368 61.111 26.32 9.16 35.87 5.14
647 650 1.999634 AAGAGATTGGCATCCCCGGG 62.000 60.000 15.80 15.80 35.87 5.73
648 651 0.764890 TAAGAGATTGGCATCCCCGG 59.235 55.000 0.00 0.00 35.87 5.73
649 652 2.618709 GTTTAAGAGATTGGCATCCCCG 59.381 50.000 0.00 0.00 35.87 5.73
650 653 3.885901 GAGTTTAAGAGATTGGCATCCCC 59.114 47.826 0.00 0.00 0.00 4.81
651 654 4.526970 TGAGTTTAAGAGATTGGCATCCC 58.473 43.478 0.00 0.00 0.00 3.85
652 655 5.415701 TGTTGAGTTTAAGAGATTGGCATCC 59.584 40.000 0.00 0.00 0.00 3.51
653 656 6.500684 TGTTGAGTTTAAGAGATTGGCATC 57.499 37.500 0.00 0.00 0.00 3.91
654 657 6.491403 AGTTGTTGAGTTTAAGAGATTGGCAT 59.509 34.615 0.00 0.00 0.00 4.40
655 658 5.827797 AGTTGTTGAGTTTAAGAGATTGGCA 59.172 36.000 0.00 0.00 0.00 4.92
656 659 6.319141 AGTTGTTGAGTTTAAGAGATTGGC 57.681 37.500 0.00 0.00 0.00 4.52
657 660 9.057089 AGTTAGTTGTTGAGTTTAAGAGATTGG 57.943 33.333 0.00 0.00 0.00 3.16
658 661 9.869844 CAGTTAGTTGTTGAGTTTAAGAGATTG 57.130 33.333 0.00 0.00 0.00 2.67
659 662 8.560374 GCAGTTAGTTGTTGAGTTTAAGAGATT 58.440 33.333 0.00 0.00 0.00 2.40
660 663 7.095607 CGCAGTTAGTTGTTGAGTTTAAGAGAT 60.096 37.037 0.00 0.00 0.00 2.75
661 664 6.200286 CGCAGTTAGTTGTTGAGTTTAAGAGA 59.800 38.462 0.00 0.00 0.00 3.10
662 665 6.200286 TCGCAGTTAGTTGTTGAGTTTAAGAG 59.800 38.462 0.00 0.00 0.00 2.85
663 666 6.044046 TCGCAGTTAGTTGTTGAGTTTAAGA 58.956 36.000 0.00 0.00 0.00 2.10
664 667 6.281848 TCGCAGTTAGTTGTTGAGTTTAAG 57.718 37.500 0.00 0.00 0.00 1.85
665 668 6.665474 TTCGCAGTTAGTTGTTGAGTTTAA 57.335 33.333 0.00 0.00 0.00 1.52
666 669 6.665474 TTTCGCAGTTAGTTGTTGAGTTTA 57.335 33.333 0.00 0.00 0.00 2.01
667 670 5.554822 TTTCGCAGTTAGTTGTTGAGTTT 57.445 34.783 0.00 0.00 0.00 2.66
668 671 5.065988 ACATTTCGCAGTTAGTTGTTGAGTT 59.934 36.000 0.00 0.00 0.00 3.01
669 672 4.574828 ACATTTCGCAGTTAGTTGTTGAGT 59.425 37.500 0.00 0.00 0.00 3.41
670 673 5.095691 ACATTTCGCAGTTAGTTGTTGAG 57.904 39.130 0.00 0.00 0.00 3.02
671 674 5.493133 AACATTTCGCAGTTAGTTGTTGA 57.507 34.783 0.00 0.00 0.00 3.18
672 675 6.402017 CAAAACATTTCGCAGTTAGTTGTTG 58.598 36.000 0.00 0.00 0.00 3.33
673 676 5.005299 GCAAAACATTTCGCAGTTAGTTGTT 59.995 36.000 0.00 0.00 0.00 2.83
674 677 4.502645 GCAAAACATTTCGCAGTTAGTTGT 59.497 37.500 0.00 0.00 0.00 3.32
675 678 4.739716 AGCAAAACATTTCGCAGTTAGTTG 59.260 37.500 0.00 0.00 0.00 3.16
676 679 4.739716 CAGCAAAACATTTCGCAGTTAGTT 59.260 37.500 0.00 0.00 0.00 2.24
677 680 4.036262 TCAGCAAAACATTTCGCAGTTAGT 59.964 37.500 0.00 0.00 0.00 2.24
678 681 4.536065 TCAGCAAAACATTTCGCAGTTAG 58.464 39.130 0.00 0.00 0.00 2.34
679 682 4.560136 TCAGCAAAACATTTCGCAGTTA 57.440 36.364 0.00 0.00 0.00 2.24
680 683 3.435105 TCAGCAAAACATTTCGCAGTT 57.565 38.095 0.00 0.00 0.00 3.16
681 684 3.115554 GTTCAGCAAAACATTTCGCAGT 58.884 40.909 0.00 0.00 0.00 4.40
682 685 2.472488 GGTTCAGCAAAACATTTCGCAG 59.528 45.455 3.98 0.00 0.00 5.18
683 686 2.100584 AGGTTCAGCAAAACATTTCGCA 59.899 40.909 3.98 0.00 0.00 5.10
684 687 2.742774 AGGTTCAGCAAAACATTTCGC 58.257 42.857 3.98 0.00 0.00 4.70
685 688 3.490526 CCAAGGTTCAGCAAAACATTTCG 59.509 43.478 3.98 0.00 31.32 3.46
686 689 4.507756 GTCCAAGGTTCAGCAAAACATTTC 59.492 41.667 3.98 0.00 31.32 2.17
687 690 4.081198 TGTCCAAGGTTCAGCAAAACATTT 60.081 37.500 3.98 0.00 31.32 2.32
688 691 3.450457 TGTCCAAGGTTCAGCAAAACATT 59.550 39.130 3.98 0.27 33.76 2.71
689 692 3.030291 TGTCCAAGGTTCAGCAAAACAT 58.970 40.909 3.98 0.00 0.00 2.71
690 693 2.426738 CTGTCCAAGGTTCAGCAAAACA 59.573 45.455 3.98 0.00 0.00 2.83
691 694 2.427095 ACTGTCCAAGGTTCAGCAAAAC 59.573 45.455 11.58 0.00 33.12 2.43
692 695 2.733956 ACTGTCCAAGGTTCAGCAAAA 58.266 42.857 11.58 0.00 33.12 2.44
693 696 2.435372 ACTGTCCAAGGTTCAGCAAA 57.565 45.000 11.58 0.00 33.12 3.68
694 697 2.435372 AACTGTCCAAGGTTCAGCAA 57.565 45.000 11.58 0.00 33.12 3.91
695 698 3.569194 TTAACTGTCCAAGGTTCAGCA 57.431 42.857 11.58 1.77 33.12 4.41
696 699 3.004419 GGTTTAACTGTCCAAGGTTCAGC 59.996 47.826 11.58 0.00 33.12 4.26
697 700 4.461198 AGGTTTAACTGTCCAAGGTTCAG 58.539 43.478 10.60 10.60 35.60 3.02
698 701 4.457466 GAGGTTTAACTGTCCAAGGTTCA 58.543 43.478 0.00 0.00 0.00 3.18
699 702 3.497262 CGAGGTTTAACTGTCCAAGGTTC 59.503 47.826 0.00 0.00 0.00 3.62
700 703 3.473625 CGAGGTTTAACTGTCCAAGGTT 58.526 45.455 0.00 0.00 0.00 3.50
701 704 2.224450 CCGAGGTTTAACTGTCCAAGGT 60.224 50.000 0.00 0.00 0.00 3.50
702 705 2.224450 ACCGAGGTTTAACTGTCCAAGG 60.224 50.000 0.00 0.00 0.00 3.61
703 706 3.121738 ACCGAGGTTTAACTGTCCAAG 57.878 47.619 0.00 0.00 0.00 3.61
704 707 3.118334 TGAACCGAGGTTTAACTGTCCAA 60.118 43.478 9.09 0.00 38.60 3.53
705 708 2.435069 TGAACCGAGGTTTAACTGTCCA 59.565 45.455 9.09 0.00 38.60 4.02
706 709 3.064931 CTGAACCGAGGTTTAACTGTCC 58.935 50.000 9.09 0.00 38.60 4.02
707 710 2.479275 GCTGAACCGAGGTTTAACTGTC 59.521 50.000 9.09 0.00 38.60 3.51
708 711 2.104281 AGCTGAACCGAGGTTTAACTGT 59.896 45.455 9.09 0.00 38.60 3.55
709 712 2.767505 AGCTGAACCGAGGTTTAACTG 58.232 47.619 9.09 2.45 38.60 3.16
710 713 4.820894 ATAGCTGAACCGAGGTTTAACT 57.179 40.909 9.09 8.26 38.60 2.24
711 714 4.807834 GGTATAGCTGAACCGAGGTTTAAC 59.192 45.833 9.09 0.58 38.60 2.01
712 715 4.467082 TGGTATAGCTGAACCGAGGTTTAA 59.533 41.667 9.09 0.54 38.60 1.52
713 716 4.025360 TGGTATAGCTGAACCGAGGTTTA 58.975 43.478 9.09 4.12 38.60 2.01
714 717 2.835764 TGGTATAGCTGAACCGAGGTTT 59.164 45.455 9.09 0.00 38.60 3.27
715 718 2.463752 TGGTATAGCTGAACCGAGGTT 58.536 47.619 7.30 7.30 41.54 3.50
716 719 2.154567 TGGTATAGCTGAACCGAGGT 57.845 50.000 12.98 0.00 38.70 3.85
717 720 2.167693 TGTTGGTATAGCTGAACCGAGG 59.832 50.000 12.98 0.00 38.70 4.63
718 721 3.520290 TGTTGGTATAGCTGAACCGAG 57.480 47.619 12.98 0.00 38.70 4.63
719 722 3.196901 ACATGTTGGTATAGCTGAACCGA 59.803 43.478 12.98 9.35 38.70 4.69
720 723 3.531538 ACATGTTGGTATAGCTGAACCG 58.468 45.455 12.98 3.24 38.70 4.44
721 724 4.770795 AGACATGTTGGTATAGCTGAACC 58.229 43.478 11.40 11.40 36.24 3.62
722 725 5.292101 GTGAGACATGTTGGTATAGCTGAAC 59.708 44.000 0.00 1.17 0.00 3.18
723 726 5.419542 GTGAGACATGTTGGTATAGCTGAA 58.580 41.667 0.00 0.00 0.00 3.02
724 727 4.141937 GGTGAGACATGTTGGTATAGCTGA 60.142 45.833 0.00 0.00 0.00 4.26
725 728 4.122776 GGTGAGACATGTTGGTATAGCTG 58.877 47.826 0.00 0.00 0.00 4.24
726 729 3.774766 TGGTGAGACATGTTGGTATAGCT 59.225 43.478 0.00 0.00 0.00 3.32
727 730 4.137116 TGGTGAGACATGTTGGTATAGC 57.863 45.455 0.00 0.00 0.00 2.97
728 731 4.984785 CGATGGTGAGACATGTTGGTATAG 59.015 45.833 0.00 0.00 0.00 1.31
729 732 4.404394 ACGATGGTGAGACATGTTGGTATA 59.596 41.667 0.00 0.00 0.00 1.47
730 733 3.197766 ACGATGGTGAGACATGTTGGTAT 59.802 43.478 0.00 0.00 0.00 2.73
731 734 2.565391 ACGATGGTGAGACATGTTGGTA 59.435 45.455 0.00 0.00 0.00 3.25
732 735 1.347707 ACGATGGTGAGACATGTTGGT 59.652 47.619 0.00 0.00 0.00 3.67
733 736 2.099141 ACGATGGTGAGACATGTTGG 57.901 50.000 0.00 0.00 0.00 3.77
741 744 7.841245 GCTTACTGCTTACACGATGGTGAGA 62.841 48.000 15.36 0.00 41.81 3.27
742 745 5.724390 GCTTACTGCTTACACGATGGTGAG 61.724 50.000 15.36 3.58 41.81 3.51
743 746 3.921411 GCTTACTGCTTACACGATGGTGA 60.921 47.826 15.36 0.00 41.81 4.02
744 747 2.348666 GCTTACTGCTTACACGATGGTG 59.651 50.000 6.28 6.28 43.47 4.17
745 748 2.028476 TGCTTACTGCTTACACGATGGT 60.028 45.455 0.00 0.00 43.37 3.55
746 749 2.604914 CTGCTTACTGCTTACACGATGG 59.395 50.000 0.00 0.00 43.37 3.51
747 750 3.254060 ACTGCTTACTGCTTACACGATG 58.746 45.455 0.00 0.00 43.37 3.84
748 751 3.594603 ACTGCTTACTGCTTACACGAT 57.405 42.857 0.00 0.00 43.37 3.73
749 752 3.504906 AGTACTGCTTACTGCTTACACGA 59.495 43.478 0.00 0.00 39.78 4.35
750 753 3.834610 AGTACTGCTTACTGCTTACACG 58.165 45.455 0.00 0.00 39.78 4.49
759 762 7.113658 AGCATAATGTACAGTACTGCTTACT 57.886 36.000 22.90 5.47 42.23 2.24
760 763 7.115095 GCTAGCATAATGTACAGTACTGCTTAC 59.885 40.741 28.27 17.71 39.12 2.34
761 764 7.014326 AGCTAGCATAATGTACAGTACTGCTTA 59.986 37.037 28.27 14.60 39.12 3.09
762 765 5.986135 GCTAGCATAATGTACAGTACTGCTT 59.014 40.000 28.27 19.07 39.12 3.91
763 766 5.303078 AGCTAGCATAATGTACAGTACTGCT 59.697 40.000 27.21 27.21 41.10 4.24
764 767 5.403766 CAGCTAGCATAATGTACAGTACTGC 59.596 44.000 22.90 20.34 0.00 4.40
765 768 6.507900 ACAGCTAGCATAATGTACAGTACTG 58.492 40.000 21.44 21.44 0.00 2.74
766 769 6.321435 TGACAGCTAGCATAATGTACAGTACT 59.679 38.462 18.83 2.13 0.00 2.73
767 770 6.418226 GTGACAGCTAGCATAATGTACAGTAC 59.582 42.308 18.83 3.49 0.00 2.73
768 771 6.321435 AGTGACAGCTAGCATAATGTACAGTA 59.679 38.462 18.83 5.37 0.00 2.74
769 772 5.127845 AGTGACAGCTAGCATAATGTACAGT 59.872 40.000 18.83 11.65 0.00 3.55
770 773 5.595885 AGTGACAGCTAGCATAATGTACAG 58.404 41.667 18.83 0.00 0.00 2.74
771 774 5.360999 AGAGTGACAGCTAGCATAATGTACA 59.639 40.000 18.83 9.55 0.00 2.90
772 775 5.837437 AGAGTGACAGCTAGCATAATGTAC 58.163 41.667 18.83 10.75 0.00 2.90
773 776 5.830457 AGAGAGTGACAGCTAGCATAATGTA 59.170 40.000 18.83 0.00 0.00 2.29
774 777 4.648762 AGAGAGTGACAGCTAGCATAATGT 59.351 41.667 18.83 12.44 0.00 2.71
775 778 5.199024 AGAGAGTGACAGCTAGCATAATG 57.801 43.478 18.83 8.90 0.00 1.90
776 779 4.280677 GGAGAGAGTGACAGCTAGCATAAT 59.719 45.833 18.83 0.00 0.00 1.28
777 780 3.634448 GGAGAGAGTGACAGCTAGCATAA 59.366 47.826 18.83 0.00 0.00 1.90
778 781 3.117701 AGGAGAGAGTGACAGCTAGCATA 60.118 47.826 18.83 0.00 0.00 3.14
779 782 2.031120 GGAGAGAGTGACAGCTAGCAT 58.969 52.381 18.83 4.01 0.00 3.79
780 783 1.005332 AGGAGAGAGTGACAGCTAGCA 59.995 52.381 18.83 0.00 0.00 3.49
781 784 1.762708 AGGAGAGAGTGACAGCTAGC 58.237 55.000 6.62 6.62 0.00 3.42
782 785 2.687935 GGAAGGAGAGAGTGACAGCTAG 59.312 54.545 0.00 0.00 0.00 3.42
783 786 2.310349 AGGAAGGAGAGAGTGACAGCTA 59.690 50.000 0.00 0.00 0.00 3.32
784 787 1.077005 AGGAAGGAGAGAGTGACAGCT 59.923 52.381 0.00 0.00 0.00 4.24
785 788 1.476488 GAGGAAGGAGAGAGTGACAGC 59.524 57.143 0.00 0.00 0.00 4.40
786 789 2.099405 GGAGGAAGGAGAGAGTGACAG 58.901 57.143 0.00 0.00 0.00 3.51
787 790 1.429299 TGGAGGAAGGAGAGAGTGACA 59.571 52.381 0.00 0.00 0.00 3.58
788 791 2.223803 TGGAGGAAGGAGAGAGTGAC 57.776 55.000 0.00 0.00 0.00 3.67
789 792 2.584965 AGATGGAGGAAGGAGAGAGTGA 59.415 50.000 0.00 0.00 0.00 3.41
790 793 2.958355 GAGATGGAGGAAGGAGAGAGTG 59.042 54.545 0.00 0.00 0.00 3.51
791 794 2.091333 GGAGATGGAGGAAGGAGAGAGT 60.091 54.545 0.00 0.00 0.00 3.24
792 795 2.177669 AGGAGATGGAGGAAGGAGAGAG 59.822 54.545 0.00 0.00 0.00 3.20
793 796 2.176798 GAGGAGATGGAGGAAGGAGAGA 59.823 54.545 0.00 0.00 0.00 3.10
794 797 2.177669 AGAGGAGATGGAGGAAGGAGAG 59.822 54.545 0.00 0.00 0.00 3.20
795 798 2.222271 AGAGGAGATGGAGGAAGGAGA 58.778 52.381 0.00 0.00 0.00 3.71
796 799 2.773525 AGAGGAGATGGAGGAAGGAG 57.226 55.000 0.00 0.00 0.00 3.69
797 800 3.408183 TCTAGAGGAGATGGAGGAAGGA 58.592 50.000 0.00 0.00 0.00 3.36
798 801 3.893753 TCTAGAGGAGATGGAGGAAGG 57.106 52.381 0.00 0.00 0.00 3.46
799 802 5.660864 AGTTTTCTAGAGGAGATGGAGGAAG 59.339 44.000 0.00 0.00 32.88 3.46
800 803 5.594777 AGTTTTCTAGAGGAGATGGAGGAA 58.405 41.667 0.00 0.00 32.88 3.36
801 804 5.213868 AGTTTTCTAGAGGAGATGGAGGA 57.786 43.478 0.00 0.00 32.88 3.71
802 805 8.581578 GTTATAGTTTTCTAGAGGAGATGGAGG 58.418 40.741 0.00 0.00 35.72 4.30
803 806 8.581578 GGTTATAGTTTTCTAGAGGAGATGGAG 58.418 40.741 0.00 0.00 35.72 3.86
804 807 8.065627 TGGTTATAGTTTTCTAGAGGAGATGGA 58.934 37.037 0.00 0.00 35.72 3.41
805 808 8.251383 TGGTTATAGTTTTCTAGAGGAGATGG 57.749 38.462 0.00 0.00 35.72 3.51
806 809 9.535878 GTTGGTTATAGTTTTCTAGAGGAGATG 57.464 37.037 0.00 0.00 35.72 2.90
807 810 9.268282 TGTTGGTTATAGTTTTCTAGAGGAGAT 57.732 33.333 0.00 0.00 35.72 2.75
808 811 8.660295 TGTTGGTTATAGTTTTCTAGAGGAGA 57.340 34.615 0.00 0.00 35.72 3.71
821 824 9.582648 ACCTTTTGAGTTTATGTTGGTTATAGT 57.417 29.630 0.00 0.00 0.00 2.12
824 827 9.541143 CAAACCTTTTGAGTTTATGTTGGTTAT 57.459 29.630 0.00 0.00 35.71 1.89
825 828 7.492994 GCAAACCTTTTGAGTTTATGTTGGTTA 59.507 33.333 2.80 0.00 35.71 2.85
826 829 6.315144 GCAAACCTTTTGAGTTTATGTTGGTT 59.685 34.615 2.80 0.00 35.71 3.67
827 830 5.815222 GCAAACCTTTTGAGTTTATGTTGGT 59.185 36.000 2.80 0.00 35.71 3.67
828 831 5.814705 TGCAAACCTTTTGAGTTTATGTTGG 59.185 36.000 2.80 0.00 35.71 3.77
829 832 6.509997 GCTGCAAACCTTTTGAGTTTATGTTG 60.510 38.462 2.80 0.00 35.71 3.33
830 833 5.523552 GCTGCAAACCTTTTGAGTTTATGTT 59.476 36.000 2.80 0.00 35.71 2.71
831 834 5.049828 GCTGCAAACCTTTTGAGTTTATGT 58.950 37.500 2.80 0.00 35.71 2.29
832 835 4.148696 CGCTGCAAACCTTTTGAGTTTATG 59.851 41.667 0.00 0.00 35.71 1.90
833 836 4.037446 TCGCTGCAAACCTTTTGAGTTTAT 59.963 37.500 0.00 0.00 35.71 1.40
834 837 3.378742 TCGCTGCAAACCTTTTGAGTTTA 59.621 39.130 0.00 0.00 35.71 2.01
835 838 2.165437 TCGCTGCAAACCTTTTGAGTTT 59.835 40.909 0.00 0.00 37.93 2.66
836 839 1.748493 TCGCTGCAAACCTTTTGAGTT 59.252 42.857 0.00 0.00 0.00 3.01
837 840 1.334869 CTCGCTGCAAACCTTTTGAGT 59.665 47.619 0.00 0.00 0.00 3.41
838 841 1.334869 ACTCGCTGCAAACCTTTTGAG 59.665 47.619 0.00 0.00 0.00 3.02
839 842 1.388547 ACTCGCTGCAAACCTTTTGA 58.611 45.000 0.00 0.00 0.00 2.69
840 843 3.559238 ATACTCGCTGCAAACCTTTTG 57.441 42.857 0.00 0.00 0.00 2.44
841 844 4.941263 TCATATACTCGCTGCAAACCTTTT 59.059 37.500 0.00 0.00 0.00 2.27
842 845 4.513442 TCATATACTCGCTGCAAACCTTT 58.487 39.130 0.00 0.00 0.00 3.11
843 846 4.122776 CTCATATACTCGCTGCAAACCTT 58.877 43.478 0.00 0.00 0.00 3.50
844 847 3.722147 CTCATATACTCGCTGCAAACCT 58.278 45.455 0.00 0.00 0.00 3.50
845 848 2.221981 GCTCATATACTCGCTGCAAACC 59.778 50.000 0.00 0.00 0.00 3.27
846 849 2.097202 CGCTCATATACTCGCTGCAAAC 60.097 50.000 0.00 0.00 0.00 2.93
847 850 2.127251 CGCTCATATACTCGCTGCAAA 58.873 47.619 0.00 0.00 0.00 3.68
848 851 1.067060 ACGCTCATATACTCGCTGCAA 59.933 47.619 0.00 0.00 0.00 4.08
849 852 0.668535 ACGCTCATATACTCGCTGCA 59.331 50.000 0.00 0.00 0.00 4.41
850 853 1.716581 GAACGCTCATATACTCGCTGC 59.283 52.381 0.00 0.00 0.00 5.25
851 854 2.976509 CAGAACGCTCATATACTCGCTG 59.023 50.000 0.00 0.00 0.00 5.18
852 855 2.605823 GCAGAACGCTCATATACTCGCT 60.606 50.000 0.00 0.00 37.77 4.93
853 856 1.716581 GCAGAACGCTCATATACTCGC 59.283 52.381 0.00 0.00 37.77 5.03
854 857 2.320367 GGCAGAACGCTCATATACTCG 58.680 52.381 0.00 0.00 41.91 4.18
855 858 2.031069 TCGGCAGAACGCTCATATACTC 60.031 50.000 0.00 0.00 41.91 2.59
856 859 1.954382 TCGGCAGAACGCTCATATACT 59.046 47.619 0.00 0.00 41.91 2.12
857 860 2.417339 TCGGCAGAACGCTCATATAC 57.583 50.000 0.00 0.00 41.91 1.47
858 861 2.556622 TGATCGGCAGAACGCTCATATA 59.443 45.455 0.00 0.00 41.91 0.86
859 862 1.341209 TGATCGGCAGAACGCTCATAT 59.659 47.619 0.00 0.00 41.91 1.78
860 863 0.744281 TGATCGGCAGAACGCTCATA 59.256 50.000 0.00 0.00 41.91 2.15
861 864 1.517361 TGATCGGCAGAACGCTCAT 59.483 52.632 0.00 0.00 41.91 2.90
862 865 2.969827 TGATCGGCAGAACGCTCA 59.030 55.556 0.00 0.00 41.91 4.26
871 874 5.056480 CCAAATATACTGAACTGATCGGCA 58.944 41.667 0.00 0.00 38.03 5.69
872 875 5.297547 TCCAAATATACTGAACTGATCGGC 58.702 41.667 0.00 0.00 38.03 5.54
873 876 5.928839 CCTCCAAATATACTGAACTGATCGG 59.071 44.000 0.00 0.00 40.53 4.18
874 877 5.406780 GCCTCCAAATATACTGAACTGATCG 59.593 44.000 0.00 0.00 0.00 3.69
875 878 6.529220 AGCCTCCAAATATACTGAACTGATC 58.471 40.000 0.00 0.00 0.00 2.92
876 879 6.506538 AGCCTCCAAATATACTGAACTGAT 57.493 37.500 0.00 0.00 0.00 2.90
877 880 5.451937 CGAGCCTCCAAATATACTGAACTGA 60.452 44.000 0.00 0.00 0.00 3.41
878 881 4.747108 CGAGCCTCCAAATATACTGAACTG 59.253 45.833 0.00 0.00 0.00 3.16
879 882 4.406003 ACGAGCCTCCAAATATACTGAACT 59.594 41.667 0.00 0.00 0.00 3.01
880 883 4.694339 ACGAGCCTCCAAATATACTGAAC 58.306 43.478 0.00 0.00 0.00 3.18
881 884 4.202223 GGACGAGCCTCCAAATATACTGAA 60.202 45.833 0.00 0.00 0.00 3.02
882 885 3.321111 GGACGAGCCTCCAAATATACTGA 59.679 47.826 0.00 0.00 0.00 3.41
883 886 3.069586 TGGACGAGCCTCCAAATATACTG 59.930 47.826 0.00 0.00 37.39 2.74
884 887 3.305720 TGGACGAGCCTCCAAATATACT 58.694 45.455 0.00 0.00 37.39 2.12
885 888 3.321111 TCTGGACGAGCCTCCAAATATAC 59.679 47.826 0.00 0.00 39.97 1.47
886 889 3.572642 TCTGGACGAGCCTCCAAATATA 58.427 45.455 0.00 0.00 39.97 0.86
887 890 2.398588 TCTGGACGAGCCTCCAAATAT 58.601 47.619 0.00 0.00 39.97 1.28
888 891 1.860641 TCTGGACGAGCCTCCAAATA 58.139 50.000 0.00 0.00 39.97 1.40
889 892 0.984230 TTCTGGACGAGCCTCCAAAT 59.016 50.000 0.00 0.00 39.97 2.32
890 893 0.321671 CTTCTGGACGAGCCTCCAAA 59.678 55.000 0.00 0.00 39.97 3.28
891 894 0.541998 TCTTCTGGACGAGCCTCCAA 60.542 55.000 0.00 0.00 39.97 3.53
892 895 0.541998 TTCTTCTGGACGAGCCTCCA 60.542 55.000 0.00 0.00 38.05 3.86
893 896 0.608640 TTTCTTCTGGACGAGCCTCC 59.391 55.000 0.00 0.00 37.63 4.30
894 897 2.457366 TTTTCTTCTGGACGAGCCTC 57.543 50.000 0.00 0.00 37.63 4.70
895 898 2.368875 TCTTTTTCTTCTGGACGAGCCT 59.631 45.455 0.00 0.00 37.63 4.58
896 899 2.767505 TCTTTTTCTTCTGGACGAGCC 58.232 47.619 0.00 0.00 37.10 4.70
897 900 6.402658 CCTTAATCTTTTTCTTCTGGACGAGC 60.403 42.308 0.00 0.00 0.00 5.03
898 901 6.874134 TCCTTAATCTTTTTCTTCTGGACGAG 59.126 38.462 0.00 0.00 0.00 4.18
899 902 6.649557 GTCCTTAATCTTTTTCTTCTGGACGA 59.350 38.462 0.00 0.00 32.39 4.20
900 903 6.128254 GGTCCTTAATCTTTTTCTTCTGGACG 60.128 42.308 0.00 0.00 40.55 4.79
901 904 6.943146 AGGTCCTTAATCTTTTTCTTCTGGAC 59.057 38.462 0.00 0.00 39.37 4.02
902 905 7.091533 AGGTCCTTAATCTTTTTCTTCTGGA 57.908 36.000 0.00 0.00 0.00 3.86
903 906 7.767250 AAGGTCCTTAATCTTTTTCTTCTGG 57.233 36.000 0.93 0.00 0.00 3.86
904 907 8.454894 GCTAAGGTCCTTAATCTTTTTCTTCTG 58.545 37.037 12.50 0.00 0.00 3.02
905 908 7.612244 GGCTAAGGTCCTTAATCTTTTTCTTCT 59.388 37.037 12.50 0.00 0.00 2.85
906 909 7.414208 CGGCTAAGGTCCTTAATCTTTTTCTTC 60.414 40.741 12.50 0.00 0.00 2.87
907 910 6.374613 CGGCTAAGGTCCTTAATCTTTTTCTT 59.625 38.462 12.50 0.00 0.00 2.52
908 911 5.880887 CGGCTAAGGTCCTTAATCTTTTTCT 59.119 40.000 12.50 0.00 0.00 2.52
909 912 5.448768 GCGGCTAAGGTCCTTAATCTTTTTC 60.449 44.000 12.50 0.00 0.00 2.29
910 913 4.398358 GCGGCTAAGGTCCTTAATCTTTTT 59.602 41.667 12.50 0.00 0.00 1.94
911 914 3.945921 GCGGCTAAGGTCCTTAATCTTTT 59.054 43.478 12.50 0.00 0.00 2.27
912 915 3.200165 AGCGGCTAAGGTCCTTAATCTTT 59.800 43.478 12.50 0.00 0.00 2.52
913 916 2.772515 AGCGGCTAAGGTCCTTAATCTT 59.227 45.455 12.50 0.00 0.00 2.40
914 917 2.365941 GAGCGGCTAAGGTCCTTAATCT 59.634 50.000 12.50 6.97 32.92 2.40
915 918 2.756829 GAGCGGCTAAGGTCCTTAATC 58.243 52.381 12.50 7.28 32.92 1.75
916 919 2.912690 GAGCGGCTAAGGTCCTTAAT 57.087 50.000 12.50 0.00 32.92 1.40
922 925 1.740332 GAGGAGGAGCGGCTAAGGTC 61.740 65.000 0.60 0.00 37.86 3.85
923 926 1.758906 GAGGAGGAGCGGCTAAGGT 60.759 63.158 0.60 0.00 0.00 3.50
924 927 2.503382 GGAGGAGGAGCGGCTAAGG 61.503 68.421 0.60 0.00 0.00 2.69
925 928 1.456705 AGGAGGAGGAGCGGCTAAG 60.457 63.158 0.60 0.00 0.00 2.18
926 929 1.455959 GAGGAGGAGGAGCGGCTAA 60.456 63.158 0.60 0.00 0.00 3.09
927 930 1.939082 AAGAGGAGGAGGAGCGGCTA 61.939 60.000 0.60 0.00 0.00 3.93
928 931 3.310035 AAGAGGAGGAGGAGCGGCT 62.310 63.158 0.00 0.00 0.00 5.52
929 932 2.762043 AAGAGGAGGAGGAGCGGC 60.762 66.667 0.00 0.00 0.00 6.53
930 933 2.131067 GGAAGAGGAGGAGGAGCGG 61.131 68.421 0.00 0.00 0.00 5.52
931 934 2.131067 GGGAAGAGGAGGAGGAGCG 61.131 68.421 0.00 0.00 0.00 5.03
932 935 0.326143 AAGGGAAGAGGAGGAGGAGC 60.326 60.000 0.00 0.00 0.00 4.70
933 936 1.691163 GGAAGGGAAGAGGAGGAGGAG 60.691 61.905 0.00 0.00 0.00 3.69
934 937 0.340208 GGAAGGGAAGAGGAGGAGGA 59.660 60.000 0.00 0.00 0.00 3.71
935 938 0.341609 AGGAAGGGAAGAGGAGGAGG 59.658 60.000 0.00 0.00 0.00 4.30
936 939 1.788229 GAGGAAGGGAAGAGGAGGAG 58.212 60.000 0.00 0.00 0.00 3.69
940 943 1.686110 GGCGAGGAAGGGAAGAGGA 60.686 63.158 0.00 0.00 0.00 3.71
1180 1183 1.153823 GCTAGATCGTGTGCACCGT 60.154 57.895 21.61 12.53 0.00 4.83
1264 1268 0.750850 GCGCCTCCTGTATAGAACCA 59.249 55.000 0.00 0.00 0.00 3.67
1537 1550 3.792736 GATAGGGCCGCACCACCA 61.793 66.667 0.00 0.00 42.05 4.17
1570 1583 0.911769 TCCATCTCCAAGCAACGGAT 59.088 50.000 0.00 0.00 0.00 4.18
1600 1613 2.504244 GCCAGACGACGACCTTCG 60.504 66.667 0.00 0.00 46.93 3.79
1659 1672 1.203994 CAAACGACGACCTCCACCTAT 59.796 52.381 0.00 0.00 0.00 2.57
1741 1755 0.393537 GCCATCTTCCACTGGTCCAG 60.394 60.000 17.88 17.88 37.52 3.86
1847 1864 2.158143 ACCCAGACCTCTCACCTAAACT 60.158 50.000 0.00 0.00 0.00 2.66
1879 1896 2.564062 CAAATGATGAAGGGGTGCAAGT 59.436 45.455 0.00 0.00 0.00 3.16
1924 1954 7.759489 AAGTAGAACAACAATATGCCTGAAA 57.241 32.000 0.00 0.00 0.00 2.69
2035 2077 8.272866 AGCTGCAAAAACGAATATAAACAAAAC 58.727 29.630 1.02 0.00 0.00 2.43
2036 2078 8.359060 AGCTGCAAAAACGAATATAAACAAAA 57.641 26.923 1.02 0.00 0.00 2.44
2037 2079 7.938563 AGCTGCAAAAACGAATATAAACAAA 57.061 28.000 1.02 0.00 0.00 2.83
2038 2080 7.938563 AAGCTGCAAAAACGAATATAAACAA 57.061 28.000 1.02 0.00 0.00 2.83
2039 2081 7.272515 GCTAAGCTGCAAAAACGAATATAAACA 59.727 33.333 1.02 0.00 0.00 2.83
2040 2082 7.484959 AGCTAAGCTGCAAAAACGAATATAAAC 59.515 33.333 1.02 0.00 37.57 2.01
2041 2083 7.535139 AGCTAAGCTGCAAAAACGAATATAAA 58.465 30.769 1.02 0.00 37.57 1.40
2042 2084 7.083875 AGCTAAGCTGCAAAAACGAATATAA 57.916 32.000 1.02 0.00 37.57 0.98
2043 2085 6.677781 AGCTAAGCTGCAAAAACGAATATA 57.322 33.333 1.02 0.00 37.57 0.86
2044 2086 5.567138 AGCTAAGCTGCAAAAACGAATAT 57.433 34.783 1.02 0.00 37.57 1.28
2045 2087 6.489127 TTAGCTAAGCTGCAAAAACGAATA 57.511 33.333 0.86 0.00 40.10 1.75
2046 2088 3.923017 AGCTAAGCTGCAAAAACGAAT 57.077 38.095 1.02 0.00 37.57 3.34
2047 2089 4.822036 TTAGCTAAGCTGCAAAAACGAA 57.178 36.364 0.86 0.00 40.10 3.85
2048 2090 4.533222 GTTTAGCTAAGCTGCAAAAACGA 58.467 39.130 12.62 0.00 40.10 3.85
2049 2091 3.668656 GGTTTAGCTAAGCTGCAAAAACG 59.331 43.478 18.31 0.00 40.10 3.60
2050 2092 4.871513 AGGTTTAGCTAAGCTGCAAAAAC 58.128 39.130 18.31 13.90 42.75 2.43
2051 2093 5.768164 ACTAGGTTTAGCTAAGCTGCAAAAA 59.232 36.000 18.31 0.00 44.03 1.94
2052 2094 5.313712 ACTAGGTTTAGCTAAGCTGCAAAA 58.686 37.500 18.31 0.00 44.03 2.44
2053 2095 4.906618 ACTAGGTTTAGCTAAGCTGCAAA 58.093 39.130 18.31 0.00 44.03 3.68
2054 2096 4.553330 ACTAGGTTTAGCTAAGCTGCAA 57.447 40.909 18.31 0.00 44.03 4.08
2055 2097 4.553330 AACTAGGTTTAGCTAAGCTGCA 57.447 40.909 18.31 4.99 44.03 4.41
2056 2098 4.935808 TGAAACTAGGTTTAGCTAAGCTGC 59.064 41.667 18.31 4.66 44.03 5.25
2057 2099 6.398918 TCTGAAACTAGGTTTAGCTAAGCTG 58.601 40.000 18.31 11.84 44.03 4.24
2058 2100 6.607004 TCTGAAACTAGGTTTAGCTAAGCT 57.393 37.500 18.31 14.16 45.96 3.74
2059 2101 7.388224 ACTTTCTGAAACTAGGTTTAGCTAAGC 59.612 37.037 18.49 11.57 35.77 3.09
2060 2102 8.834749 ACTTTCTGAAACTAGGTTTAGCTAAG 57.165 34.615 17.65 17.65 35.77 2.18
2061 2103 9.269453 GAACTTTCTGAAACTAGGTTTAGCTAA 57.731 33.333 7.42 0.86 35.77 3.09
2062 2104 8.648693 AGAACTTTCTGAAACTAGGTTTAGCTA 58.351 33.333 7.42 0.00 35.77 3.32
2063 2105 7.510407 AGAACTTTCTGAAACTAGGTTTAGCT 58.490 34.615 7.42 0.00 35.77 3.32
2064 2106 7.731882 AGAACTTTCTGAAACTAGGTTTAGC 57.268 36.000 7.42 0.00 35.77 3.09
2065 2107 9.937175 CAAAGAACTTTCTGAAACTAGGTTTAG 57.063 33.333 5.96 5.96 37.65 1.85
2066 2108 8.403236 GCAAAGAACTTTCTGAAACTAGGTTTA 58.597 33.333 0.00 0.00 37.65 2.01
2067 2109 7.093945 TGCAAAGAACTTTCTGAAACTAGGTTT 60.094 33.333 0.00 0.00 37.65 3.27
2068 2110 6.377146 TGCAAAGAACTTTCTGAAACTAGGTT 59.623 34.615 0.00 0.00 37.65 3.50
2069 2111 5.885912 TGCAAAGAACTTTCTGAAACTAGGT 59.114 36.000 0.00 0.00 37.65 3.08
2070 2112 6.183360 TGTGCAAAGAACTTTCTGAAACTAGG 60.183 38.462 0.00 0.00 37.65 3.02
2071 2113 6.785191 TGTGCAAAGAACTTTCTGAAACTAG 58.215 36.000 0.00 0.00 37.65 2.57
2072 2114 6.751514 TGTGCAAAGAACTTTCTGAAACTA 57.248 33.333 0.00 0.00 37.65 2.24
2073 2115 5.643379 TGTGCAAAGAACTTTCTGAAACT 57.357 34.783 0.00 0.00 37.65 2.66
2074 2116 6.268566 AGATGTGCAAAGAACTTTCTGAAAC 58.731 36.000 0.00 0.00 37.65 2.78
2075 2117 6.455360 AGATGTGCAAAGAACTTTCTGAAA 57.545 33.333 2.44 2.44 37.65 2.69
2076 2118 6.095300 TCAAGATGTGCAAAGAACTTTCTGAA 59.905 34.615 0.00 0.00 37.65 3.02
2077 2119 5.589855 TCAAGATGTGCAAAGAACTTTCTGA 59.410 36.000 0.00 0.00 37.65 3.27
2078 2120 5.684626 GTCAAGATGTGCAAAGAACTTTCTG 59.315 40.000 0.00 0.00 37.65 3.02
2079 2121 5.357878 TGTCAAGATGTGCAAAGAACTTTCT 59.642 36.000 0.00 0.00 39.74 2.52
2080 2122 5.581605 TGTCAAGATGTGCAAAGAACTTTC 58.418 37.500 0.00 0.00 0.00 2.62
2081 2123 5.581126 TGTCAAGATGTGCAAAGAACTTT 57.419 34.783 0.00 0.00 0.00 2.66
2082 2124 5.779529 ATGTCAAGATGTGCAAAGAACTT 57.220 34.783 0.00 0.00 0.00 2.66
2083 2125 5.779529 AATGTCAAGATGTGCAAAGAACT 57.220 34.783 0.00 0.00 0.00 3.01
2084 2126 6.256321 ACAAAATGTCAAGATGTGCAAAGAAC 59.744 34.615 0.00 0.00 0.00 3.01
2085 2127 6.339730 ACAAAATGTCAAGATGTGCAAAGAA 58.660 32.000 0.00 0.00 0.00 2.52
2086 2128 5.904941 ACAAAATGTCAAGATGTGCAAAGA 58.095 33.333 0.00 0.00 0.00 2.52
2087 2129 6.206600 GACAAAATGTCAAGATGTGCAAAG 57.793 37.500 5.65 0.00 46.22 2.77
2102 2144 4.990426 GGTGAACATTTCTGGGACAAAATG 59.010 41.667 6.34 6.34 44.37 2.32
2103 2145 4.653341 TGGTGAACATTTCTGGGACAAAAT 59.347 37.500 0.00 0.00 38.70 1.82
2104 2146 4.026744 TGGTGAACATTTCTGGGACAAAA 58.973 39.130 0.00 0.00 38.70 2.44
2105 2147 3.383185 GTGGTGAACATTTCTGGGACAAA 59.617 43.478 0.00 0.00 38.70 2.83
2106 2148 2.955660 GTGGTGAACATTTCTGGGACAA 59.044 45.455 0.00 0.00 38.70 3.18
2107 2149 2.582052 GTGGTGAACATTTCTGGGACA 58.418 47.619 0.00 0.00 0.00 4.02
2108 2150 1.886542 GGTGGTGAACATTTCTGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
2109 2151 1.496857 TGGTGGTGAACATTTCTGGGA 59.503 47.619 0.00 0.00 0.00 4.37
2110 2152 1.993956 TGGTGGTGAACATTTCTGGG 58.006 50.000 0.00 0.00 0.00 4.45
2111 2153 4.605640 AAATGGTGGTGAACATTTCTGG 57.394 40.909 0.00 0.00 41.94 3.86
2112 2154 5.920273 GTGTAAATGGTGGTGAACATTTCTG 59.080 40.000 5.97 0.00 43.86 3.02
2113 2155 5.278266 CGTGTAAATGGTGGTGAACATTTCT 60.278 40.000 5.97 0.00 43.86 2.52
2114 2156 4.915085 CGTGTAAATGGTGGTGAACATTTC 59.085 41.667 5.97 1.04 43.86 2.17
2115 2157 4.580995 TCGTGTAAATGGTGGTGAACATTT 59.419 37.500 7.63 7.63 45.96 2.32
2116 2158 4.138290 TCGTGTAAATGGTGGTGAACATT 58.862 39.130 0.00 0.00 38.85 2.71
2117 2159 3.745799 TCGTGTAAATGGTGGTGAACAT 58.254 40.909 0.00 0.00 0.00 2.71
2118 2160 3.195471 TCGTGTAAATGGTGGTGAACA 57.805 42.857 0.00 0.00 0.00 3.18
2119 2161 3.304190 GGTTCGTGTAAATGGTGGTGAAC 60.304 47.826 0.00 0.00 35.07 3.18
2120 2162 2.879646 GGTTCGTGTAAATGGTGGTGAA 59.120 45.455 0.00 0.00 0.00 3.18
2121 2163 2.158798 TGGTTCGTGTAAATGGTGGTGA 60.159 45.455 0.00 0.00 0.00 4.02
2122 2164 2.222886 TGGTTCGTGTAAATGGTGGTG 58.777 47.619 0.00 0.00 0.00 4.17
2123 2165 2.642154 TGGTTCGTGTAAATGGTGGT 57.358 45.000 0.00 0.00 0.00 4.16
2124 2166 3.254657 ACATTGGTTCGTGTAAATGGTGG 59.745 43.478 0.00 0.00 34.92 4.61
2125 2167 4.497473 ACATTGGTTCGTGTAAATGGTG 57.503 40.909 0.00 0.00 34.92 4.17
2126 2168 5.285651 CAAACATTGGTTCGTGTAAATGGT 58.714 37.500 0.00 0.00 35.82 3.55
2127 2169 4.683781 CCAAACATTGGTTCGTGTAAATGG 59.316 41.667 0.87 0.00 45.93 3.16
2128 2170 5.820926 CCAAACATTGGTTCGTGTAAATG 57.179 39.130 0.87 0.00 45.93 2.32
2141 2183 6.150307 TGCTGTTAGTATACCACCAAACATTG 59.850 38.462 0.00 0.00 34.67 2.82
2142 2184 6.242396 TGCTGTTAGTATACCACCAAACATT 58.758 36.000 0.00 0.00 34.67 2.71
2143 2185 5.811190 TGCTGTTAGTATACCACCAAACAT 58.189 37.500 0.00 0.00 34.67 2.71
2144 2186 5.221762 ACTGCTGTTAGTATACCACCAAACA 60.222 40.000 0.00 2.86 34.25 2.83
2145 2187 5.243207 ACTGCTGTTAGTATACCACCAAAC 58.757 41.667 0.00 0.00 0.00 2.93
2146 2188 5.492855 ACTGCTGTTAGTATACCACCAAA 57.507 39.130 0.00 0.00 0.00 3.28
2147 2189 5.718130 AGTACTGCTGTTAGTATACCACCAA 59.282 40.000 0.09 0.00 35.75 3.67
2148 2190 5.266788 AGTACTGCTGTTAGTATACCACCA 58.733 41.667 0.09 0.00 35.75 4.17
2149 2191 5.848833 AGTACTGCTGTTAGTATACCACC 57.151 43.478 0.09 0.00 35.75 4.61
2150 2192 8.218338 TCTTAGTACTGCTGTTAGTATACCAC 57.782 38.462 5.39 0.00 35.75 4.16
2151 2193 8.847196 CATCTTAGTACTGCTGTTAGTATACCA 58.153 37.037 5.39 0.00 35.75 3.25
2152 2194 9.064706 TCATCTTAGTACTGCTGTTAGTATACC 57.935 37.037 5.39 0.00 35.75 2.73
2155 2197 8.982091 TCTCATCTTAGTACTGCTGTTAGTAT 57.018 34.615 5.39 0.00 35.75 2.12
2156 2198 8.841300 CATCTCATCTTAGTACTGCTGTTAGTA 58.159 37.037 5.39 0.00 32.19 1.82
2157 2199 7.683222 GCATCTCATCTTAGTACTGCTGTTAGT 60.683 40.741 5.39 0.00 34.71 2.24
2158 2200 6.640499 GCATCTCATCTTAGTACTGCTGTTAG 59.360 42.308 5.39 0.00 0.00 2.34
2159 2201 6.096846 TGCATCTCATCTTAGTACTGCTGTTA 59.903 38.462 5.39 0.00 0.00 2.41
2160 2202 5.105187 TGCATCTCATCTTAGTACTGCTGTT 60.105 40.000 5.39 0.00 0.00 3.16
2161 2203 4.403752 TGCATCTCATCTTAGTACTGCTGT 59.596 41.667 5.39 0.66 0.00 4.40
2162 2204 4.941657 TGCATCTCATCTTAGTACTGCTG 58.058 43.478 5.39 0.00 0.00 4.41
2163 2205 5.604758 TTGCATCTCATCTTAGTACTGCT 57.395 39.130 5.39 0.00 0.00 4.24
2164 2206 6.668541 TTTTGCATCTCATCTTAGTACTGC 57.331 37.500 5.39 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.