Multiple sequence alignment - TraesCS1D01G072100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G072100 chr1D 100.000 5397 0 0 1 5397 52566805 52572201 0.000000e+00 9967
1 TraesCS1D01G072100 chr1D 90.286 175 14 3 2215 2388 9033990 9033818 5.440000e-55 226
2 TraesCS1D01G072100 chr1B 86.907 2276 162 62 3163 5377 83633205 83635405 0.000000e+00 2427
3 TraesCS1D01G072100 chr1B 89.296 1663 81 40 591 2219 83629515 83631114 0.000000e+00 1995
4 TraesCS1D01G072100 chr1B 95.485 443 20 0 2384 2826 83631114 83631556 0.000000e+00 708
5 TraesCS1D01G072100 chr1B 83.333 522 43 23 15 525 83629026 83629514 4.960000e-120 442
6 TraesCS1D01G072100 chr1B 88.169 355 30 10 2450 2796 486563993 486563643 3.890000e-111 412
7 TraesCS1D01G072100 chr1B 88.169 355 30 10 2450 2796 649994624 649994274 3.890000e-111 412
8 TraesCS1D01G072100 chr1B 87.637 364 32 11 2450 2805 643781104 643780746 1.400000e-110 411
9 TraesCS1D01G072100 chr1B 82.164 342 39 12 2855 3176 83631557 83631896 1.920000e-69 274
10 TraesCS1D01G072100 chr1B 84.232 241 20 13 2676 2901 83631610 83631847 9.100000e-53 219
11 TraesCS1D01G072100 chr1B 91.176 136 8 4 2910 3044 83631407 83631539 1.190000e-41 182
12 TraesCS1D01G072100 chr1A 88.427 1443 114 29 2677 4089 52230318 52231737 0.000000e+00 1690
13 TraesCS1D01G072100 chr1A 86.267 1653 110 47 432 2037 52228045 52229627 0.000000e+00 1687
14 TraesCS1D01G072100 chr1A 87.836 1340 96 33 4086 5397 52231764 52233064 0.000000e+00 1509
15 TraesCS1D01G072100 chr1A 92.466 730 44 6 2384 3111 52229797 52230517 0.000000e+00 1033
16 TraesCS1D01G072100 chr1A 83.589 457 21 25 1 428 52227305 52227736 3.950000e-101 379
17 TraesCS1D01G072100 chr3D 100.000 465 0 0 1300 1764 442750626 442750162 0.000000e+00 859
18 TraesCS1D01G072100 chr3B 88.761 347 29 9 2456 2796 174472379 174472721 3.010000e-112 416
19 TraesCS1D01G072100 chr3B 88.169 355 30 10 2450 2796 776607513 776607863 3.890000e-111 412
20 TraesCS1D01G072100 chr4A 87.606 355 32 10 2450 2796 649063582 649063232 8.420000e-108 401
21 TraesCS1D01G072100 chr4A 87.606 355 32 10 2450 2796 713459456 713459106 8.420000e-108 401
22 TraesCS1D01G072100 chr4A 88.571 175 17 3 2215 2388 456461741 456461569 5.480000e-50 209
23 TraesCS1D01G072100 chr2D 90.286 175 15 2 2215 2388 650034735 650034908 1.510000e-55 228
24 TraesCS1D01G072100 chr6B 90.173 173 16 1 2218 2389 118884638 118884466 1.960000e-54 224
25 TraesCS1D01G072100 chr7B 89.714 175 17 1 2215 2388 383794820 383794994 7.040000e-54 222
26 TraesCS1D01G072100 chr2B 89.714 175 17 1 2215 2388 107528966 107529140 7.040000e-54 222
27 TraesCS1D01G072100 chr6D 90.116 172 12 4 2214 2385 464735314 464735148 9.100000e-53 219
28 TraesCS1D01G072100 chr5B 88.827 179 18 2 2212 2388 216256596 216256418 9.100000e-53 219
29 TraesCS1D01G072100 chr4B 88.636 176 18 2 2214 2388 216967962 216967788 4.230000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G072100 chr1D 52566805 52572201 5396 False 9967.000000 9967 100.000000 1 5397 1 chr1D.!!$F1 5396
1 TraesCS1D01G072100 chr1B 83629026 83635405 6379 False 892.428571 2427 87.513286 15 5377 7 chr1B.!!$F1 5362
2 TraesCS1D01G072100 chr1A 52227305 52233064 5759 False 1259.600000 1690 87.717000 1 5397 5 chr1A.!!$F1 5396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 836 0.101399 CGAATCACTCAGTCGGGGAG 59.899 60.0 0.00 0.0 38.97 4.30 F
496 837 0.179097 GAATCACTCAGTCGGGGAGC 60.179 60.0 0.00 0.0 35.79 4.70 F
501 842 0.251653 ACTCAGTCGGGGAGCTTGTA 60.252 55.0 0.00 0.0 35.79 2.41 F
649 1000 0.380378 GAGCGTGCAACCAACAAAGA 59.620 50.0 0.00 0.0 0.00 2.52 F
744 1103 0.467384 CACTCATGGCAGACCCCTAG 59.533 60.0 0.00 0.0 33.59 3.02 F
2232 2691 0.741221 GCAGTGGCGGACCTAGAAAG 60.741 60.0 0.00 0.0 36.63 2.62 F
3518 5581 0.031585 TCGACACACCGTGGAAAGAG 59.968 55.0 3.03 0.0 37.94 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2213 2672 0.741221 CTTTCTAGGTCCGCCACTGC 60.741 60.000 0.00 0.00 37.19 4.40 R
2373 2832 0.828022 TTCATAGTGCGTACCCAGGG 59.172 55.000 2.85 2.85 0.00 4.45 R
2382 2841 1.061131 CGCCTGAACTTTCATAGTGCG 59.939 52.381 9.42 9.42 34.83 5.34 R
2642 3101 0.610687 AGCTCAGAACACTAGCCCAC 59.389 55.000 0.00 0.00 36.92 4.61 R
2740 3200 0.108585 ACTGTCCCAGCGATGTGTTT 59.891 50.000 0.00 0.00 34.37 2.83 R
3912 5977 0.179065 TCCTGCAGATGATTCGCCAG 60.179 55.000 17.39 0.00 0.00 4.85 R
4730 6871 0.038526 GTCGACGTGGTGATGACCTT 60.039 55.000 2.11 0.00 43.58 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 47 2.683933 AATCCCACCCGTCTCGCT 60.684 61.111 0.00 0.00 0.00 4.93
202 231 2.356794 GCTGTCGCGTAGTTGTACC 58.643 57.895 5.77 0.00 0.00 3.34
204 233 1.614385 CTGTCGCGTAGTTGTACCTG 58.386 55.000 5.77 0.00 0.00 4.00
205 234 0.953727 TGTCGCGTAGTTGTACCTGT 59.046 50.000 5.77 0.00 0.00 4.00
206 235 2.150390 TGTCGCGTAGTTGTACCTGTA 58.850 47.619 5.77 0.00 0.00 2.74
207 236 2.160219 TGTCGCGTAGTTGTACCTGTAG 59.840 50.000 5.77 0.00 0.00 2.74
208 237 1.739466 TCGCGTAGTTGTACCTGTAGG 59.261 52.381 5.77 0.00 42.17 3.18
209 238 1.739466 CGCGTAGTTGTACCTGTAGGA 59.261 52.381 4.64 0.00 38.94 2.94
210 239 2.223203 CGCGTAGTTGTACCTGTAGGAG 60.223 54.545 4.64 0.00 38.94 3.69
229 258 3.543884 TACGTTACGTACTCCCCGT 57.456 52.632 13.90 1.93 41.54 5.28
230 259 1.365699 TACGTTACGTACTCCCCGTC 58.634 55.000 13.90 0.00 41.54 4.79
272 301 4.749310 CAGCGCGTCTGCCCTCTT 62.749 66.667 15.60 0.00 38.08 2.85
273 302 4.749310 AGCGCGTCTGCCCTCTTG 62.749 66.667 8.43 0.00 38.08 3.02
276 305 2.359230 GCGTCTGCCCTCTTGCTT 60.359 61.111 0.00 0.00 33.98 3.91
282 311 2.030451 GTCTGCCCTCTTGCTTTTCTTG 60.030 50.000 0.00 0.00 0.00 3.02
287 316 2.029560 CCCTCTTGCTTTTCTTGCTTCC 60.030 50.000 0.00 0.00 0.00 3.46
334 364 1.152355 CCTGCCCCCAACTTTTCCA 60.152 57.895 0.00 0.00 0.00 3.53
384 415 0.251341 TTTGCCTCCTCAAAGCTCCC 60.251 55.000 0.00 0.00 32.69 4.30
428 460 8.624367 TTAATTCGGTTATGTCCTCTTTCAAA 57.376 30.769 0.00 0.00 0.00 2.69
429 461 6.743575 ATTCGGTTATGTCCTCTTTCAAAG 57.256 37.500 0.00 0.00 0.00 2.77
430 462 5.223449 TCGGTTATGTCCTCTTTCAAAGT 57.777 39.130 0.00 0.00 0.00 2.66
481 821 2.876550 AGGTTTTATTAGCGCCCGAATC 59.123 45.455 2.29 0.00 0.00 2.52
484 824 2.902705 TTATTAGCGCCCGAATCACT 57.097 45.000 2.29 0.00 0.00 3.41
493 834 4.814900 CGAATCACTCAGTCGGGG 57.185 61.111 0.00 0.00 38.97 5.73
494 835 2.189833 CGAATCACTCAGTCGGGGA 58.810 57.895 0.00 0.00 38.97 4.81
495 836 0.101399 CGAATCACTCAGTCGGGGAG 59.899 60.000 0.00 0.00 38.97 4.30
496 837 0.179097 GAATCACTCAGTCGGGGAGC 60.179 60.000 0.00 0.00 35.79 4.70
498 839 0.616111 ATCACTCAGTCGGGGAGCTT 60.616 55.000 0.00 0.00 35.79 3.74
499 840 1.079543 CACTCAGTCGGGGAGCTTG 60.080 63.158 0.00 0.00 35.79 4.01
500 841 1.534235 ACTCAGTCGGGGAGCTTGT 60.534 57.895 0.00 0.00 35.79 3.16
501 842 0.251653 ACTCAGTCGGGGAGCTTGTA 60.252 55.000 0.00 0.00 35.79 2.41
502 843 1.115467 CTCAGTCGGGGAGCTTGTAT 58.885 55.000 0.00 0.00 0.00 2.29
504 845 1.115467 CAGTCGGGGAGCTTGTATCT 58.885 55.000 0.00 0.00 0.00 1.98
505 846 1.067821 CAGTCGGGGAGCTTGTATCTC 59.932 57.143 0.00 0.00 0.00 2.75
506 847 1.063567 AGTCGGGGAGCTTGTATCTCT 60.064 52.381 0.00 0.00 0.00 3.10
508 849 1.757118 TCGGGGAGCTTGTATCTCTTG 59.243 52.381 0.00 0.00 0.00 3.02
531 872 4.159135 GTCATCACAAGCTCCAAAATCCAT 59.841 41.667 0.00 0.00 0.00 3.41
535 876 2.901839 ACAAGCTCCAAAATCCATTGCT 59.098 40.909 0.00 0.00 0.00 3.91
554 895 1.375140 CGGCCTATGCGATCATGCT 60.375 57.895 0.00 0.00 38.85 3.79
559 909 2.486918 CCTATGCGATCATGCTCACAA 58.513 47.619 0.00 0.00 34.22 3.33
569 919 6.085573 CGATCATGCTCACAAACACATTTTA 58.914 36.000 0.00 0.00 0.00 1.52
595 946 2.629617 CAAAGTGGAGCAAGGTTCCAAT 59.370 45.455 3.28 0.00 45.79 3.16
625 976 7.013274 TCCACATTCTTCTTCAACGAAAGATTT 59.987 33.333 0.00 0.00 35.30 2.17
644 995 1.009675 CACTGAGCGTGCAACCAAC 60.010 57.895 0.00 0.00 36.72 3.77
645 996 1.451207 ACTGAGCGTGCAACCAACA 60.451 52.632 0.00 0.00 0.00 3.33
649 1000 0.380378 GAGCGTGCAACCAACAAAGA 59.620 50.000 0.00 0.00 0.00 2.52
650 1001 0.814457 AGCGTGCAACCAACAAAGAA 59.186 45.000 0.00 0.00 0.00 2.52
651 1002 1.199624 GCGTGCAACCAACAAAGAAG 58.800 50.000 0.00 0.00 0.00 2.85
653 1004 1.535860 CGTGCAACCAACAAAGAAGGG 60.536 52.381 0.00 0.00 0.00 3.95
654 1005 1.754226 GTGCAACCAACAAAGAAGGGA 59.246 47.619 0.00 0.00 0.00 4.20
655 1006 2.167487 GTGCAACCAACAAAGAAGGGAA 59.833 45.455 0.00 0.00 0.00 3.97
656 1007 2.167487 TGCAACCAACAAAGAAGGGAAC 59.833 45.455 0.00 0.00 0.00 3.62
657 1008 2.798145 GCAACCAACAAAGAAGGGAACG 60.798 50.000 0.00 0.00 0.00 3.95
658 1009 1.029681 ACCAACAAAGAAGGGAACGC 58.970 50.000 0.00 0.00 0.00 4.84
659 1010 1.028905 CCAACAAAGAAGGGAACGCA 58.971 50.000 0.00 0.00 0.00 5.24
660 1011 1.613437 CCAACAAAGAAGGGAACGCAT 59.387 47.619 0.00 0.00 0.00 4.73
661 1012 2.351738 CCAACAAAGAAGGGAACGCATC 60.352 50.000 0.00 0.00 0.00 3.91
683 1034 3.823330 GCACATGCTCAGCCTGGC 61.823 66.667 11.65 11.65 38.21 4.85
739 1094 0.826715 TAGCTCACTCATGGCAGACC 59.173 55.000 0.00 0.00 0.00 3.85
744 1103 0.467384 CACTCATGGCAGACCCCTAG 59.533 60.000 0.00 0.00 33.59 3.02
872 1236 6.096564 TCCCGTTACACAAAAGTGGTAAAAAT 59.903 34.615 0.38 0.00 0.00 1.82
873 1237 6.199342 CCCGTTACACAAAAGTGGTAAAAATG 59.801 38.462 0.38 0.00 0.00 2.32
874 1238 6.291902 CCGTTACACAAAAGTGGTAAAAATGC 60.292 38.462 0.38 0.00 0.00 3.56
875 1239 6.253727 CGTTACACAAAAGTGGTAAAAATGCA 59.746 34.615 0.00 0.00 0.00 3.96
876 1240 7.514435 CGTTACACAAAAGTGGTAAAAATGCAG 60.514 37.037 0.00 0.00 0.00 4.41
877 1241 4.570369 ACACAAAAGTGGTAAAAATGCAGC 59.430 37.500 0.00 0.00 0.00 5.25
878 1242 3.801594 ACAAAAGTGGTAAAAATGCAGCG 59.198 39.130 0.00 0.00 0.00 5.18
1199 1590 4.796231 GTCCATGCCGACGTCGCT 62.796 66.667 31.73 15.57 38.18 4.93
1252 1646 4.565850 GGAGGAGGAGGGGGCGAT 62.566 72.222 0.00 0.00 0.00 4.58
1565 1962 2.138601 CAGAAGCGACGACGACGAC 61.139 63.158 22.94 13.66 42.66 4.34
1573 1970 4.219846 CGACGACGACGCGGAGAT 62.220 66.667 12.47 0.00 43.96 2.75
1635 2038 1.302511 GCCAAGAAACAGAGGCGGA 60.303 57.895 0.00 0.00 37.41 5.54
1775 2181 4.742201 GTGCTGGAGGCGCGAGAA 62.742 66.667 12.10 0.00 45.43 2.87
1797 2203 2.436292 AGGAGGAGTCGTCGACGG 60.436 66.667 35.05 18.25 37.67 4.79
1940 2346 1.088340 CAAGCTGAGCGGGATCAGTG 61.088 60.000 14.62 3.44 46.93 3.66
1944 2350 1.364626 CTGAGCGGGATCAGTGCAAC 61.365 60.000 5.80 0.00 41.52 4.17
1980 2386 6.633856 GTGGCATTCACCTTCAGAAATAAAT 58.366 36.000 0.00 0.00 40.39 1.40
2082 2496 2.821307 GCATTCGCCTTCAGAAAGAG 57.179 50.000 0.00 0.00 34.14 2.85
2086 2505 4.320494 GCATTCGCCTTCAGAAAGAGAAAA 60.320 41.667 2.46 0.00 34.78 2.29
2090 2509 4.752101 TCGCCTTCAGAAAGAGAAAAAGAG 59.248 41.667 0.00 0.00 34.14 2.85
2143 2563 6.183347 AGAGATCAGTTAAAATTGGAGTGGG 58.817 40.000 0.00 0.00 0.00 4.61
2149 2569 6.953520 TCAGTTAAAATTGGAGTGGGATTCAT 59.046 34.615 0.00 0.00 0.00 2.57
2160 2580 5.256474 GAGTGGGATTCATTTTCAGAAGGA 58.744 41.667 0.00 0.00 0.00 3.36
2161 2581 5.644188 AGTGGGATTCATTTTCAGAAGGAA 58.356 37.500 0.00 0.00 0.00 3.36
2212 2671 9.988350 AAAAATCAGCTGTAATCAAATAGTACG 57.012 29.630 14.67 0.00 31.16 3.67
2213 2672 7.715265 AATCAGCTGTAATCAAATAGTACGG 57.285 36.000 14.67 0.00 37.94 4.02
2218 2677 6.274001 CTGTAATCAAATAGTACGGCAGTG 57.726 41.667 0.00 0.00 31.16 3.66
2219 2678 5.113383 TGTAATCAAATAGTACGGCAGTGG 58.887 41.667 0.00 0.00 31.16 4.00
2220 2679 2.018542 TCAAATAGTACGGCAGTGGC 57.981 50.000 6.62 6.62 40.13 5.01
2229 2688 3.075005 GGCAGTGGCGGACCTAGA 61.075 66.667 0.00 0.00 42.47 2.43
2230 2689 2.656069 GGCAGTGGCGGACCTAGAA 61.656 63.158 0.00 0.00 42.47 2.10
2231 2690 1.295423 GCAGTGGCGGACCTAGAAA 59.705 57.895 0.00 0.00 36.63 2.52
2232 2691 0.741221 GCAGTGGCGGACCTAGAAAG 60.741 60.000 0.00 0.00 36.63 2.62
2233 2692 0.895530 CAGTGGCGGACCTAGAAAGA 59.104 55.000 0.00 0.00 36.63 2.52
2234 2693 1.275291 CAGTGGCGGACCTAGAAAGAA 59.725 52.381 0.00 0.00 36.63 2.52
2235 2694 1.975680 AGTGGCGGACCTAGAAAGAAA 59.024 47.619 0.00 0.00 36.63 2.52
2236 2695 2.370849 AGTGGCGGACCTAGAAAGAAAA 59.629 45.455 0.00 0.00 36.63 2.29
2237 2696 2.483106 GTGGCGGACCTAGAAAGAAAAC 59.517 50.000 0.00 0.00 36.63 2.43
2238 2697 2.105134 TGGCGGACCTAGAAAGAAAACA 59.895 45.455 0.00 0.00 36.63 2.83
2239 2698 2.483106 GGCGGACCTAGAAAGAAAACAC 59.517 50.000 0.00 0.00 0.00 3.32
2240 2699 3.135994 GCGGACCTAGAAAGAAAACACA 58.864 45.455 0.00 0.00 0.00 3.72
2241 2700 3.562557 GCGGACCTAGAAAGAAAACACAA 59.437 43.478 0.00 0.00 0.00 3.33
2242 2701 4.319549 GCGGACCTAGAAAGAAAACACAAG 60.320 45.833 0.00 0.00 0.00 3.16
2243 2702 4.213482 CGGACCTAGAAAGAAAACACAAGG 59.787 45.833 0.00 0.00 0.00 3.61
2244 2703 5.131067 GGACCTAGAAAGAAAACACAAGGT 58.869 41.667 0.00 0.00 38.77 3.50
2245 2704 5.008712 GGACCTAGAAAGAAAACACAAGGTG 59.991 44.000 0.00 0.00 36.26 4.00
2256 2715 2.652941 CACAAGGTGTGCACACTTTT 57.347 45.000 40.20 31.77 42.42 2.27
2257 2716 3.773860 CACAAGGTGTGCACACTTTTA 57.226 42.857 40.20 9.13 42.42 1.52
2258 2717 4.103365 CACAAGGTGTGCACACTTTTAA 57.897 40.909 40.20 8.35 42.42 1.52
2259 2718 4.489810 CACAAGGTGTGCACACTTTTAAA 58.510 39.130 40.20 7.56 42.42 1.52
2260 2719 4.926238 CACAAGGTGTGCACACTTTTAAAA 59.074 37.500 40.20 6.78 42.42 1.52
2261 2720 5.406780 CACAAGGTGTGCACACTTTTAAAAA 59.593 36.000 40.20 6.00 42.42 1.94
2286 2745 9.696917 AAACTGAGGTTTATTTCAATTAGCTTG 57.303 29.630 0.00 0.00 43.00 4.01
2287 2746 7.315890 ACTGAGGTTTATTTCAATTAGCTTGC 58.684 34.615 0.00 0.00 34.66 4.01
2288 2747 7.039784 ACTGAGGTTTATTTCAATTAGCTTGCA 60.040 33.333 0.00 0.00 34.66 4.08
2289 2748 7.839907 TGAGGTTTATTTCAATTAGCTTGCAT 58.160 30.769 0.00 0.00 34.66 3.96
2290 2749 7.760794 TGAGGTTTATTTCAATTAGCTTGCATG 59.239 33.333 0.00 0.00 34.66 4.06
2291 2750 7.043565 AGGTTTATTTCAATTAGCTTGCATGG 58.956 34.615 0.00 0.00 34.66 3.66
2292 2751 6.258507 GGTTTATTTCAATTAGCTTGCATGGG 59.741 38.462 0.00 0.00 34.66 4.00
2293 2752 2.965572 TTCAATTAGCTTGCATGGGC 57.034 45.000 0.00 0.34 41.68 5.36
2294 2753 1.113788 TCAATTAGCTTGCATGGGCC 58.886 50.000 0.00 0.00 40.13 5.80
2295 2754 1.117150 CAATTAGCTTGCATGGGCCT 58.883 50.000 4.53 0.00 40.13 5.19
2296 2755 1.483415 CAATTAGCTTGCATGGGCCTT 59.517 47.619 4.53 0.00 40.13 4.35
2297 2756 2.694628 CAATTAGCTTGCATGGGCCTTA 59.305 45.455 4.53 0.00 40.13 2.69
2298 2757 2.523325 TTAGCTTGCATGGGCCTTAA 57.477 45.000 4.53 0.00 40.13 1.85
2299 2758 2.523325 TAGCTTGCATGGGCCTTAAA 57.477 45.000 4.53 0.00 40.13 1.52
2300 2759 1.643310 AGCTTGCATGGGCCTTAAAA 58.357 45.000 4.53 0.00 40.13 1.52
2301 2760 1.977129 AGCTTGCATGGGCCTTAAAAA 59.023 42.857 4.53 0.00 40.13 1.94
2302 2761 2.573009 AGCTTGCATGGGCCTTAAAAAT 59.427 40.909 4.53 0.00 40.13 1.82
2303 2762 2.938451 GCTTGCATGGGCCTTAAAAATC 59.062 45.455 4.53 0.00 40.13 2.17
2304 2763 3.369787 GCTTGCATGGGCCTTAAAAATCT 60.370 43.478 4.53 0.00 40.13 2.40
2305 2764 3.891422 TGCATGGGCCTTAAAAATCTG 57.109 42.857 4.53 0.00 40.13 2.90
2306 2765 2.093553 TGCATGGGCCTTAAAAATCTGC 60.094 45.455 4.53 0.00 40.13 4.26
2307 2766 2.169144 GCATGGGCCTTAAAAATCTGCT 59.831 45.455 4.53 0.00 0.00 4.24
2308 2767 3.384467 GCATGGGCCTTAAAAATCTGCTA 59.616 43.478 4.53 0.00 0.00 3.49
2309 2768 4.141959 GCATGGGCCTTAAAAATCTGCTAA 60.142 41.667 4.53 0.00 0.00 3.09
2310 2769 5.453762 GCATGGGCCTTAAAAATCTGCTAAT 60.454 40.000 4.53 0.00 0.00 1.73
2311 2770 6.585416 CATGGGCCTTAAAAATCTGCTAATT 58.415 36.000 4.53 0.00 0.00 1.40
2312 2771 6.619329 TGGGCCTTAAAAATCTGCTAATTT 57.381 33.333 4.53 0.00 0.00 1.82
2313 2772 7.014988 TGGGCCTTAAAAATCTGCTAATTTT 57.985 32.000 4.53 4.42 39.83 1.82
2314 2773 7.457561 TGGGCCTTAAAAATCTGCTAATTTTT 58.542 30.769 19.28 19.28 45.79 1.94
2315 2774 8.598041 TGGGCCTTAAAAATCTGCTAATTTTTA 58.402 29.630 17.89 17.89 43.51 1.52
2316 2775 8.879759 GGGCCTTAAAAATCTGCTAATTTTTAC 58.120 33.333 19.93 13.18 44.58 2.01
2317 2776 9.430623 GGCCTTAAAAATCTGCTAATTTTTACA 57.569 29.630 19.93 13.88 44.58 2.41
2323 2782 9.995003 AAAAATCTGCTAATTTTTACATGGTGA 57.005 25.926 15.96 0.00 43.51 4.02
2324 2783 9.995003 AAAATCTGCTAATTTTTACATGGTGAA 57.005 25.926 0.00 0.00 35.78 3.18
2325 2784 9.995003 AAATCTGCTAATTTTTACATGGTGAAA 57.005 25.926 0.00 0.00 0.00 2.69
2326 2785 9.995003 AATCTGCTAATTTTTACATGGTGAAAA 57.005 25.926 0.00 1.77 35.95 2.29
2351 2810 9.927668 AATATGTTTTCTAAAAATCTGGGTGTG 57.072 29.630 0.00 0.00 0.00 3.82
2352 2811 5.596845 TGTTTTCTAAAAATCTGGGTGTGC 58.403 37.500 0.00 0.00 0.00 4.57
2353 2812 4.864704 TTTCTAAAAATCTGGGTGTGCC 57.135 40.909 0.00 0.00 0.00 5.01
2354 2813 3.517296 TCTAAAAATCTGGGTGTGCCA 57.483 42.857 0.00 0.00 36.17 4.92
2355 2814 4.046286 TCTAAAAATCTGGGTGTGCCAT 57.954 40.909 0.00 0.00 36.17 4.40
2356 2815 3.763360 TCTAAAAATCTGGGTGTGCCATG 59.237 43.478 0.00 0.00 36.17 3.66
2357 2816 1.269012 AAAATCTGGGTGTGCCATGG 58.731 50.000 7.63 7.63 36.17 3.66
2358 2817 1.259840 AAATCTGGGTGTGCCATGGC 61.260 55.000 30.54 30.54 42.35 4.40
2375 2834 4.974721 CACACCTGGCACACCCCC 62.975 72.222 0.00 0.00 33.59 5.40
2377 2836 4.666253 CACCTGGCACACCCCCTG 62.666 72.222 0.00 0.00 33.59 4.45
2470 2929 1.561643 TGCAACAAAGGGACCAACAA 58.438 45.000 0.00 0.00 0.00 2.83
2481 2940 4.142038 AGGGACCAACAACAAGTGATTAC 58.858 43.478 0.00 0.00 0.00 1.89
2565 3024 2.397549 GGCATCAACAGTTTCAACAGC 58.602 47.619 0.00 0.00 0.00 4.40
2642 3101 3.247648 CAGTACCTGGTGTTCAAAAGTCG 59.752 47.826 10.23 0.00 0.00 4.18
2644 3103 2.014128 ACCTGGTGTTCAAAAGTCGTG 58.986 47.619 0.00 0.00 0.00 4.35
2740 3200 1.072806 ACAAGCTCTGGTGCAGATTGA 59.927 47.619 7.75 0.00 39.92 2.57
2749 3209 2.226200 TGGTGCAGATTGAAACACATCG 59.774 45.455 0.00 0.00 34.69 3.84
2770 3232 2.472695 TGGGACAGTTAGATGCACAC 57.527 50.000 0.00 0.00 0.00 3.82
2774 3236 3.758554 GGGACAGTTAGATGCACACAAAT 59.241 43.478 0.00 0.00 0.00 2.32
2777 3239 5.391310 GGACAGTTAGATGCACACAAATCTG 60.391 44.000 0.00 0.00 34.91 2.90
2842 3304 5.380043 CCCCATCTGAATTATTAGCACAGT 58.620 41.667 0.00 0.00 0.00 3.55
3013 3483 5.573146 GCAGTTAGATGCACATAAACCTTC 58.427 41.667 0.00 0.00 45.77 3.46
3082 3554 6.980978 TCTGAATTATTAGCACAGTGACTAGC 59.019 38.462 4.15 1.44 0.00 3.42
3100 3574 6.889722 TGACTAGCAAAAGGCCATAGTTTAAT 59.110 34.615 5.01 0.00 46.50 1.40
3111 3585 5.368989 GCCATAGTTTAATAGTGACAGGCT 58.631 41.667 0.00 0.00 34.59 4.58
3113 3587 6.990349 GCCATAGTTTAATAGTGACAGGCTAA 59.010 38.462 0.00 0.00 34.59 3.09
3114 3588 7.497909 GCCATAGTTTAATAGTGACAGGCTAAA 59.502 37.037 0.00 0.00 34.59 1.85
3115 3589 9.391006 CCATAGTTTAATAGTGACAGGCTAAAA 57.609 33.333 0.00 0.00 0.00 1.52
3119 3593 8.784043 AGTTTAATAGTGACAGGCTAAAAGTTG 58.216 33.333 0.00 0.00 0.00 3.16
3121 3595 8.911918 TTAATAGTGACAGGCTAAAAGTTGAA 57.088 30.769 0.00 0.00 0.00 2.69
3122 3596 7.817418 AATAGTGACAGGCTAAAAGTTGAAA 57.183 32.000 0.00 0.00 0.00 2.69
3123 3597 5.500645 AGTGACAGGCTAAAAGTTGAAAC 57.499 39.130 0.00 0.00 0.00 2.78
3124 3598 5.193679 AGTGACAGGCTAAAAGTTGAAACT 58.806 37.500 0.00 0.00 42.04 2.66
3125 3599 6.354130 AGTGACAGGCTAAAAGTTGAAACTA 58.646 36.000 0.00 0.00 38.57 2.24
3126 3600 6.826741 AGTGACAGGCTAAAAGTTGAAACTAA 59.173 34.615 0.00 0.00 38.57 2.24
3130 3846 8.063200 ACAGGCTAAAAGTTGAAACTAAAAGT 57.937 30.769 0.00 0.00 38.57 2.66
3142 3858 7.817418 TGAAACTAAAAGTCACCAGCTAAAT 57.183 32.000 0.00 0.00 0.00 1.40
3145 3861 7.582667 AACTAAAAGTCACCAGCTAAATGTT 57.417 32.000 0.00 0.00 0.00 2.71
3222 5260 8.735692 TCCCTAAAGTCGAAACTAAAAGAAAA 57.264 30.769 0.00 0.00 33.48 2.29
3224 5262 9.394477 CCCTAAAGTCGAAACTAAAAGAAAATG 57.606 33.333 0.00 0.00 33.48 2.32
3234 5272 9.249457 GAAACTAAAAGAAAATGACCAGGAAAG 57.751 33.333 0.00 0.00 0.00 2.62
3286 5324 3.450457 AGTTGCAACAGGGACAAATTTCA 59.550 39.130 30.11 0.00 0.00 2.69
3298 5336 5.714047 GGACAAATTTCATGGTCCTTCTTC 58.286 41.667 14.99 0.00 44.99 2.87
3319 5379 7.179966 TCTTCAGTAACCTATTCCAGTGTCTA 58.820 38.462 0.00 0.00 0.00 2.59
3334 5394 5.875359 CCAGTGTCTAAACCAGATTTAGTCC 59.125 44.000 6.37 1.14 46.84 3.85
3430 5490 0.725686 CCAGCTCTCTGATTGCAACG 59.274 55.000 0.00 0.00 42.95 4.10
3438 5498 1.733912 TCTGATTGCAACGCATCACTC 59.266 47.619 0.00 0.00 38.76 3.51
3446 5506 2.202987 CGCATCACTCAGGCCTCC 60.203 66.667 0.00 0.00 0.00 4.30
3477 5537 6.752351 CACATACTGTAGCTAGTAACCACTTG 59.248 42.308 0.00 0.00 36.78 3.16
3518 5581 0.031585 TCGACACACCGTGGAAAGAG 59.968 55.000 3.03 0.00 37.94 2.85
3603 5666 5.040635 AGTTTTCTGTTTTATGCACCAACG 58.959 37.500 0.00 0.00 0.00 4.10
3633 5696 1.189524 ACCCTGCCGTGTACTGCTTA 61.190 55.000 0.00 0.00 0.00 3.09
3634 5697 0.739813 CCCTGCCGTGTACTGCTTAC 60.740 60.000 0.00 0.00 0.00 2.34
3635 5698 0.246635 CCTGCCGTGTACTGCTTACT 59.753 55.000 0.00 0.00 0.00 2.24
3781 5846 0.169009 GCAAGCCAACTCCGACAATC 59.831 55.000 0.00 0.00 0.00 2.67
3822 5887 4.275781 GCAGCTAGCTCCTCCTCT 57.724 61.111 16.15 0.00 41.15 3.69
3847 5912 3.320826 TGTCTCGAAATGTTCAGACAGGA 59.679 43.478 14.07 0.00 40.01 3.86
3888 5953 1.165907 TGAACAACAAGGCAGAGGCG 61.166 55.000 0.00 0.00 42.47 5.52
3972 6037 1.742761 GCATCAAGTGGCAAGCTAGA 58.257 50.000 0.00 0.00 0.00 2.43
4083 6148 4.332819 GTGGTCTGAATAACTGTACATGGC 59.667 45.833 0.00 0.00 0.00 4.40
4092 6187 1.066430 ACTGTACATGGCTACCCAACG 60.066 52.381 0.00 0.00 46.14 4.10
4099 6213 2.668212 GCTACCCAACGTGCTGCA 60.668 61.111 0.00 0.00 0.00 4.41
4179 6293 3.808728 TCTTGTTACAGAAGCTGCTGTT 58.191 40.909 32.19 16.22 46.42 3.16
4180 6294 3.561310 TCTTGTTACAGAAGCTGCTGTTG 59.439 43.478 32.19 16.51 46.42 3.33
4202 6316 0.376152 GCTGATGACGATGCCAACAG 59.624 55.000 0.00 0.00 37.45 3.16
4228 6342 7.255381 GCATGAAGTGAATATCCAAGCATTACT 60.255 37.037 0.00 0.00 0.00 2.24
4238 6352 5.894298 TCCAAGCATTACTGTGGAGATAT 57.106 39.130 0.00 0.00 33.38 1.63
4290 6405 3.711704 TGAAGGTCTGAAGAACCTGAACT 59.288 43.478 0.00 0.00 34.17 3.01
4294 6409 3.070302 GGTCTGAAGAACCTGAACTCTGT 59.930 47.826 0.00 0.00 0.00 3.41
4304 6419 2.634940 CCTGAACTCTGTTCCTCTCCAA 59.365 50.000 7.81 0.00 0.00 3.53
4305 6420 3.306641 CCTGAACTCTGTTCCTCTCCAAG 60.307 52.174 7.81 0.00 0.00 3.61
4306 6421 3.309296 TGAACTCTGTTCCTCTCCAAGT 58.691 45.455 7.81 0.00 0.00 3.16
4307 6422 3.322254 TGAACTCTGTTCCTCTCCAAGTC 59.678 47.826 7.81 0.00 0.00 3.01
4308 6423 3.252554 ACTCTGTTCCTCTCCAAGTCT 57.747 47.619 0.00 0.00 0.00 3.24
4309 6424 3.161866 ACTCTGTTCCTCTCCAAGTCTC 58.838 50.000 0.00 0.00 0.00 3.36
4310 6425 2.495669 CTCTGTTCCTCTCCAAGTCTCC 59.504 54.545 0.00 0.00 0.00 3.71
4311 6426 2.158310 TCTGTTCCTCTCCAAGTCTCCA 60.158 50.000 0.00 0.00 0.00 3.86
4312 6427 2.634940 CTGTTCCTCTCCAAGTCTCCAA 59.365 50.000 0.00 0.00 0.00 3.53
4353 6474 6.180472 ACTGTACATGTTTTTCCTCCCTATG 58.820 40.000 2.30 0.00 0.00 2.23
4359 6480 3.017442 GTTTTTCCTCCCTATGTCAGCC 58.983 50.000 0.00 0.00 0.00 4.85
4367 6495 1.072331 CCCTATGTCAGCCCCATGTAC 59.928 57.143 0.00 0.00 0.00 2.90
4426 6555 8.399425 AGTACGAGTTAGTTGACATAATCTCTG 58.601 37.037 0.00 0.00 0.00 3.35
4427 6556 7.159322 ACGAGTTAGTTGACATAATCTCTGT 57.841 36.000 0.00 0.00 0.00 3.41
4428 6557 8.277490 ACGAGTTAGTTGACATAATCTCTGTA 57.723 34.615 0.00 0.00 0.00 2.74
4429 6558 8.182881 ACGAGTTAGTTGACATAATCTCTGTAC 58.817 37.037 0.00 0.00 0.00 2.90
4430 6559 8.399425 CGAGTTAGTTGACATAATCTCTGTACT 58.601 37.037 0.00 0.00 0.00 2.73
4442 6574 6.936968 AATCTCTGTACTAAACCTTGTCCT 57.063 37.500 0.00 0.00 0.00 3.85
4443 6575 5.723672 TCTCTGTACTAAACCTTGTCCTG 57.276 43.478 0.00 0.00 0.00 3.86
4450 6582 0.755327 AAACCTTGTCCTGTGGTGCC 60.755 55.000 0.00 0.00 33.89 5.01
4451 6583 2.282462 CCTTGTCCTGTGGTGCCC 60.282 66.667 0.00 0.00 0.00 5.36
4453 6585 1.152777 CTTGTCCTGTGGTGCCCAA 60.153 57.895 0.00 0.00 34.18 4.12
4455 6587 0.105760 TTGTCCTGTGGTGCCCAATT 60.106 50.000 0.00 0.00 34.18 2.32
4456 6588 0.105760 TGTCCTGTGGTGCCCAATTT 60.106 50.000 0.00 0.00 34.18 1.82
4457 6589 0.603065 GTCCTGTGGTGCCCAATTTC 59.397 55.000 0.00 0.00 34.18 2.17
4458 6590 0.482446 TCCTGTGGTGCCCAATTTCT 59.518 50.000 0.00 0.00 34.18 2.52
4459 6591 0.890683 CCTGTGGTGCCCAATTTCTC 59.109 55.000 0.00 0.00 34.18 2.87
4460 6592 1.619654 CTGTGGTGCCCAATTTCTCA 58.380 50.000 0.00 0.00 34.18 3.27
4462 6594 2.165030 CTGTGGTGCCCAATTTCTCATC 59.835 50.000 0.00 0.00 34.18 2.92
4463 6595 2.170166 GTGGTGCCCAATTTCTCATCA 58.830 47.619 0.00 0.00 34.18 3.07
4464 6596 2.094545 GTGGTGCCCAATTTCTCATCAC 60.095 50.000 0.00 0.00 34.18 3.06
4465 6597 2.225091 TGGTGCCCAATTTCTCATCACT 60.225 45.455 0.00 0.00 0.00 3.41
4466 6598 2.424956 GGTGCCCAATTTCTCATCACTC 59.575 50.000 0.00 0.00 0.00 3.51
4468 6600 3.084039 TGCCCAATTTCTCATCACTCAC 58.916 45.455 0.00 0.00 0.00 3.51
4469 6601 3.245016 TGCCCAATTTCTCATCACTCACT 60.245 43.478 0.00 0.00 0.00 3.41
4471 6603 3.128242 CCCAATTTCTCATCACTCACTGC 59.872 47.826 0.00 0.00 0.00 4.40
4480 6612 3.070878 TCATCACTCACTGCACTAAACCA 59.929 43.478 0.00 0.00 0.00 3.67
4533 6665 7.814264 ATTTCTTGATCCTGCGAGATTTATT 57.186 32.000 0.00 0.00 0.00 1.40
4600 6732 1.694150 CTGATAAGAAGATGCCGGGGA 59.306 52.381 2.18 0.00 0.00 4.81
4651 6787 3.423154 CTCCGCCGCCACAAGAAC 61.423 66.667 0.00 0.00 0.00 3.01
4673 6809 4.055360 CCCAAAACCCAGAAAACGATTTC 58.945 43.478 9.93 9.93 44.34 2.17
4711 6847 3.118112 GGAGATGAGGTCAATGATGTGGT 60.118 47.826 0.00 0.00 0.00 4.16
4714 6850 3.057969 TGAGGTCAATGATGTGGTCAC 57.942 47.619 0.00 0.00 40.28 3.67
4727 6868 5.251932 TGATGTGGTCACCCCTATAAGAAAA 59.748 40.000 0.00 0.00 0.00 2.29
4728 6869 5.174037 TGTGGTCACCCCTATAAGAAAAG 57.826 43.478 0.00 0.00 0.00 2.27
4729 6870 4.847512 TGTGGTCACCCCTATAAGAAAAGA 59.152 41.667 0.00 0.00 0.00 2.52
4730 6871 5.311121 TGTGGTCACCCCTATAAGAAAAGAA 59.689 40.000 0.00 0.00 0.00 2.52
4731 6872 6.183361 TGTGGTCACCCCTATAAGAAAAGAAA 60.183 38.462 0.00 0.00 0.00 2.52
4811 6952 2.873649 GCAGGAGAGGTCCAGTTTTCTG 60.874 54.545 0.00 0.00 46.80 3.02
4815 6956 3.833070 GGAGAGGTCCAGTTTTCTGTCTA 59.167 47.826 0.00 0.00 45.68 2.59
4816 6957 4.283722 GGAGAGGTCCAGTTTTCTGTCTAA 59.716 45.833 0.00 0.00 45.68 2.10
4817 6958 5.046231 GGAGAGGTCCAGTTTTCTGTCTAAT 60.046 44.000 0.00 0.00 45.68 1.73
4818 6959 6.441088 AGAGGTCCAGTTTTCTGTCTAATT 57.559 37.500 0.00 0.00 45.68 1.40
4819 6960 6.468543 AGAGGTCCAGTTTTCTGTCTAATTC 58.531 40.000 0.00 0.00 45.68 2.17
4820 6961 6.271159 AGAGGTCCAGTTTTCTGTCTAATTCT 59.729 38.462 0.00 0.00 45.68 2.40
4825 6966 6.872020 TCCAGTTTTCTGTCTAATTCTAACCG 59.128 38.462 0.00 0.00 45.68 4.44
4831 6972 3.036091 TGTCTAATTCTAACCGAGGGGG 58.964 50.000 0.00 0.00 43.62 5.40
4974 7116 6.758416 GTCGAACCGATTAAAACTAGGGTTAT 59.242 38.462 0.00 0.00 37.85 1.89
5037 7185 1.971167 GACCGAATTGCAGCCACCA 60.971 57.895 0.00 0.00 0.00 4.17
5039 7187 1.973281 CCGAATTGCAGCCACCAGT 60.973 57.895 0.00 0.00 0.00 4.00
5088 7236 8.396390 TGACGCAAACATGTTTTTAGTTTACTA 58.604 29.630 21.10 5.24 34.03 1.82
5089 7237 8.551122 ACGCAAACATGTTTTTAGTTTACTAC 57.449 30.769 21.10 0.00 34.03 2.73
5091 7239 9.866936 CGCAAACATGTTTTTAGTTTACTACTA 57.133 29.630 21.10 0.00 38.33 1.82
5169 7317 2.557924 GACAATGGTTTGACTGCATCCA 59.442 45.455 0.00 0.00 36.64 3.41
5172 7320 2.291209 TGGTTTGACTGCATCCATGT 57.709 45.000 0.00 0.00 0.00 3.21
5174 7322 2.296752 TGGTTTGACTGCATCCATGTTG 59.703 45.455 0.00 0.00 0.00 3.33
5177 7325 1.456296 TGACTGCATCCATGTTGAGC 58.544 50.000 0.00 0.00 0.00 4.26
5235 7383 6.071728 AGGCTACATGGATGCTTAAATTATGC 60.072 38.462 0.00 4.19 0.00 3.14
5260 7408 6.375455 CAGGTTGGCTCAATCATTAAGTAGTT 59.625 38.462 1.78 0.00 0.00 2.24
5291 7439 2.446435 GTGTTGCCCATCTGGTTACAT 58.554 47.619 0.00 0.00 33.86 2.29
5328 7476 6.398095 CCTCAAATGGGTGAAGGAAATAAAC 58.602 40.000 0.00 0.00 0.00 2.01
5379 7530 6.403200 GGCAGATACGAAGCAAGAAAACATAA 60.403 38.462 0.00 0.00 0.00 1.90
5380 7531 7.189512 GCAGATACGAAGCAAGAAAACATAAT 58.810 34.615 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 72 2.646175 CGTCTTCTGCCCCTTCCGA 61.646 63.158 0.00 0.00 0.00 4.55
159 188 0.179179 GCAATCGCCTTTGCTCTGTC 60.179 55.000 10.22 0.00 46.66 3.51
160 189 1.878775 GCAATCGCCTTTGCTCTGT 59.121 52.632 10.22 0.00 46.66 3.41
161 190 4.779819 GCAATCGCCTTTGCTCTG 57.220 55.556 10.22 0.00 46.66 3.35
260 289 0.519077 GAAAAGCAAGAGGGCAGACG 59.481 55.000 0.00 0.00 35.83 4.18
266 295 2.029560 GGAAGCAAGAAAAGCAAGAGGG 60.030 50.000 0.00 0.00 0.00 4.30
334 364 2.019984 GTACTACGTCCGGACAAGGAT 58.980 52.381 32.80 16.52 43.04 3.24
379 410 1.751437 AAGCGAGGTTAATTGGGAGC 58.249 50.000 0.00 0.00 0.00 4.70
428 460 7.632721 TCGAAATTTGAAAACGCTACTTAACT 58.367 30.769 0.00 0.00 0.00 2.24
429 461 7.825627 TCGAAATTTGAAAACGCTACTTAAC 57.174 32.000 0.00 0.00 0.00 2.01
430 462 9.453325 AATTCGAAATTTGAAAACGCTACTTAA 57.547 25.926 0.00 0.00 0.00 1.85
466 806 1.684450 TGAGTGATTCGGGCGCTAATA 59.316 47.619 7.64 0.00 0.00 0.98
467 807 0.464036 TGAGTGATTCGGGCGCTAAT 59.536 50.000 7.64 5.04 0.00 1.73
468 808 0.179111 CTGAGTGATTCGGGCGCTAA 60.179 55.000 7.64 0.00 0.00 3.09
469 809 1.320344 ACTGAGTGATTCGGGCGCTA 61.320 55.000 7.64 0.00 36.43 4.26
481 821 1.079543 CAAGCTCCCCGACTGAGTG 60.080 63.158 0.00 0.00 32.31 3.51
484 824 1.112113 GATACAAGCTCCCCGACTGA 58.888 55.000 0.00 0.00 0.00 3.41
493 834 5.414360 TGTGATGACAAGAGATACAAGCTC 58.586 41.667 0.00 0.00 0.00 4.09
494 835 5.411831 TGTGATGACAAGAGATACAAGCT 57.588 39.130 0.00 0.00 0.00 3.74
506 847 4.022068 GGATTTTGGAGCTTGTGATGACAA 60.022 41.667 0.00 0.00 39.88 3.18
508 849 3.507233 TGGATTTTGGAGCTTGTGATGAC 59.493 43.478 0.00 0.00 0.00 3.06
531 872 1.300931 GATCGCATAGGCCGAGCAA 60.301 57.895 15.61 0.00 36.38 3.91
535 876 1.374631 GCATGATCGCATAGGCCGA 60.375 57.895 0.00 0.00 36.38 5.54
554 895 8.920665 CACTTTGTTTCTAAAATGTGTTTGTGA 58.079 29.630 0.00 0.00 0.00 3.58
559 909 6.756542 GCTCCACTTTGTTTCTAAAATGTGTT 59.243 34.615 0.00 0.00 0.00 3.32
569 919 3.018423 ACCTTGCTCCACTTTGTTTCT 57.982 42.857 0.00 0.00 0.00 2.52
595 946 3.250762 CGTTGAAGAAGAATGTGGAGCAA 59.749 43.478 0.00 0.00 0.00 3.91
644 995 1.200020 GTGGATGCGTTCCCTTCTTTG 59.800 52.381 3.26 0.00 44.77 2.77
645 996 1.534729 GTGGATGCGTTCCCTTCTTT 58.465 50.000 3.26 0.00 44.77 2.52
649 1000 2.046314 CGGTGGATGCGTTCCCTT 60.046 61.111 3.26 0.00 44.77 3.95
650 1001 4.778143 GCGGTGGATGCGTTCCCT 62.778 66.667 3.26 0.00 44.77 4.20
653 1004 2.398554 ATGTGCGGTGGATGCGTTC 61.399 57.895 0.00 0.00 34.24 3.95
654 1005 2.359850 ATGTGCGGTGGATGCGTT 60.360 55.556 0.00 0.00 34.24 4.84
655 1006 3.126879 CATGTGCGGTGGATGCGT 61.127 61.111 0.00 0.00 34.24 5.24
656 1007 4.541482 GCATGTGCGGTGGATGCG 62.541 66.667 0.00 0.00 33.67 4.73
669 1020 1.807886 GAAAGCCAGGCTGAGCATG 59.192 57.895 17.05 12.76 39.62 4.06
872 1236 0.804364 CCTGCATTTTACTCGCTGCA 59.196 50.000 0.00 0.00 41.98 4.41
873 1237 1.063174 CTCCTGCATTTTACTCGCTGC 59.937 52.381 0.00 0.00 35.21 5.25
874 1238 2.350522 ACTCCTGCATTTTACTCGCTG 58.649 47.619 0.00 0.00 0.00 5.18
875 1239 2.770164 ACTCCTGCATTTTACTCGCT 57.230 45.000 0.00 0.00 0.00 4.93
876 1240 4.939509 TTTACTCCTGCATTTTACTCGC 57.060 40.909 0.00 0.00 0.00 5.03
877 1241 6.073222 ACTGTTTTACTCCTGCATTTTACTCG 60.073 38.462 0.00 0.00 0.00 4.18
878 1242 7.078228 CACTGTTTTACTCCTGCATTTTACTC 58.922 38.462 0.00 0.00 0.00 2.59
1173 1564 2.282180 GGCATGGACGGTGTTGGT 60.282 61.111 0.00 0.00 0.00 3.67
1230 1621 2.787866 CCCCTCCTCCTCCTTGGA 59.212 66.667 0.00 0.00 43.86 3.53
1231 1622 2.367512 CCCCCTCCTCCTCCTTGG 60.368 72.222 0.00 0.00 37.10 3.61
1232 1623 3.093172 GCCCCCTCCTCCTCCTTG 61.093 72.222 0.00 0.00 0.00 3.61
1449 1846 4.143333 CCTCAGGTACGTGGGCCG 62.143 72.222 15.15 0.00 44.03 6.13
1568 1965 4.247380 CTGCTCCCGGCCATCTCC 62.247 72.222 2.24 0.00 40.92 3.71
1569 1966 4.247380 CCTGCTCCCGGCCATCTC 62.247 72.222 2.24 0.00 40.92 2.75
1635 2038 3.775654 CGGGAGCCTTCTTCGCCT 61.776 66.667 0.00 0.00 0.00 5.52
1676 2082 3.121030 CCAGGCTTTGACTCCGCG 61.121 66.667 0.00 0.00 0.00 6.46
1685 2091 4.729918 CTGCTCCGGCCAGGCTTT 62.730 66.667 12.43 0.00 40.77 3.51
1775 2181 3.444805 GACGACTCCTCCTGCGCT 61.445 66.667 9.73 0.00 0.00 5.92
1777 2183 3.125573 TCGACGACTCCTCCTGCG 61.126 66.667 0.00 0.00 0.00 5.18
1797 2203 4.980805 TGACGAAGCGGTGGTGGC 62.981 66.667 0.00 0.00 0.00 5.01
1806 2212 2.370281 TCCACTGAAGATGACGAAGC 57.630 50.000 0.00 0.00 0.00 3.86
1932 2338 7.965107 CACTCTAATTTAAAGTTGCACTGATCC 59.035 37.037 0.00 0.00 0.00 3.36
1940 2346 7.062255 GTGAATGCCACTCTAATTTAAAGTTGC 59.938 37.037 0.00 0.24 42.44 4.17
1944 2350 7.396540 AGGTGAATGCCACTCTAATTTAAAG 57.603 36.000 0.00 0.00 45.03 1.85
1947 2353 6.480763 TGAAGGTGAATGCCACTCTAATTTA 58.519 36.000 0.00 0.00 45.03 1.40
1974 2380 9.768215 TCCCTCTGAAGGTGATTTTTATTTATT 57.232 29.630 0.00 0.00 41.59 1.40
1975 2381 9.768215 TTCCCTCTGAAGGTGATTTTTATTTAT 57.232 29.630 0.00 0.00 41.59 1.40
1976 2382 9.594936 TTTCCCTCTGAAGGTGATTTTTATTTA 57.405 29.630 0.00 0.00 41.59 1.40
1977 2383 8.491045 TTTCCCTCTGAAGGTGATTTTTATTT 57.509 30.769 0.00 0.00 41.59 1.40
1980 2386 7.906199 TTTTTCCCTCTGAAGGTGATTTTTA 57.094 32.000 0.00 0.00 41.59 1.52
2012 2426 9.436957 TTCCACTCTAATTTTAACTGATGTCTC 57.563 33.333 0.00 0.00 0.00 3.36
2063 2477 2.350522 TCTCTTTCTGAAGGCGAATGC 58.649 47.619 0.00 0.00 41.71 3.56
2114 2533 8.257306 ACTCCAATTTTAACTGATCTCTCTCTC 58.743 37.037 0.00 0.00 0.00 3.20
2198 2657 4.124238 GCCACTGCCGTACTATTTGATTA 58.876 43.478 0.00 0.00 0.00 1.75
2212 2671 2.180159 TTTCTAGGTCCGCCACTGCC 62.180 60.000 0.00 0.00 37.19 4.85
2213 2672 0.741221 CTTTCTAGGTCCGCCACTGC 60.741 60.000 0.00 0.00 37.19 4.40
2218 2677 2.483106 GTGTTTTCTTTCTAGGTCCGCC 59.517 50.000 0.00 0.00 0.00 6.13
2219 2678 3.135994 TGTGTTTTCTTTCTAGGTCCGC 58.864 45.455 0.00 0.00 0.00 5.54
2220 2679 4.213482 CCTTGTGTTTTCTTTCTAGGTCCG 59.787 45.833 0.00 0.00 0.00 4.79
2221 2680 5.008712 CACCTTGTGTTTTCTTTCTAGGTCC 59.991 44.000 0.00 0.00 34.85 4.46
2222 2681 5.589050 ACACCTTGTGTTTTCTTTCTAGGTC 59.411 40.000 0.00 0.00 45.08 3.85
2223 2682 5.357032 CACACCTTGTGTTTTCTTTCTAGGT 59.643 40.000 0.00 0.00 45.08 3.08
2224 2683 5.821204 CACACCTTGTGTTTTCTTTCTAGG 58.179 41.667 0.00 0.00 45.08 3.02
2260 2719 9.696917 CAAGCTAATTGAAATAAACCTCAGTTT 57.303 29.630 0.00 0.00 44.01 2.66
2261 2720 7.814587 GCAAGCTAATTGAAATAAACCTCAGTT 59.185 33.333 0.00 0.00 41.83 3.16
2262 2721 7.039784 TGCAAGCTAATTGAAATAAACCTCAGT 60.040 33.333 0.00 0.00 41.83 3.41
2263 2722 7.315142 TGCAAGCTAATTGAAATAAACCTCAG 58.685 34.615 0.00 0.00 41.83 3.35
2264 2723 7.225784 TGCAAGCTAATTGAAATAAACCTCA 57.774 32.000 0.00 0.00 41.83 3.86
2265 2724 7.223387 CCATGCAAGCTAATTGAAATAAACCTC 59.777 37.037 0.00 0.00 41.83 3.85
2266 2725 7.043565 CCATGCAAGCTAATTGAAATAAACCT 58.956 34.615 0.00 0.00 41.83 3.50
2267 2726 6.258507 CCCATGCAAGCTAATTGAAATAAACC 59.741 38.462 0.00 0.00 41.83 3.27
2268 2727 6.238184 GCCCATGCAAGCTAATTGAAATAAAC 60.238 38.462 0.00 0.00 41.83 2.01
2269 2728 5.816777 GCCCATGCAAGCTAATTGAAATAAA 59.183 36.000 0.00 0.00 41.83 1.40
2270 2729 5.358922 GCCCATGCAAGCTAATTGAAATAA 58.641 37.500 0.00 0.00 41.83 1.40
2271 2730 4.202243 GGCCCATGCAAGCTAATTGAAATA 60.202 41.667 0.00 0.00 41.83 1.40
2272 2731 3.432608 GGCCCATGCAAGCTAATTGAAAT 60.433 43.478 0.00 0.00 41.83 2.17
2273 2732 2.093553 GGCCCATGCAAGCTAATTGAAA 60.094 45.455 0.00 0.00 41.83 2.69
2274 2733 1.481772 GGCCCATGCAAGCTAATTGAA 59.518 47.619 0.00 0.00 41.83 2.69
2275 2734 1.113788 GGCCCATGCAAGCTAATTGA 58.886 50.000 0.00 0.00 41.83 2.57
2276 2735 1.117150 AGGCCCATGCAAGCTAATTG 58.883 50.000 0.00 0.00 42.20 2.32
2277 2736 1.870064 AAGGCCCATGCAAGCTAATT 58.130 45.000 0.00 0.00 40.13 1.40
2278 2737 2.754012 TAAGGCCCATGCAAGCTAAT 57.246 45.000 0.00 0.00 40.13 1.73
2279 2738 2.523325 TTAAGGCCCATGCAAGCTAA 57.477 45.000 0.00 0.00 40.13 3.09
2280 2739 2.523325 TTTAAGGCCCATGCAAGCTA 57.477 45.000 0.00 0.00 40.13 3.32
2281 2740 1.643310 TTTTAAGGCCCATGCAAGCT 58.357 45.000 0.00 0.00 40.13 3.74
2282 2741 2.470983 TTTTTAAGGCCCATGCAAGC 57.529 45.000 0.00 0.00 40.13 4.01
2283 2742 4.186159 CAGATTTTTAAGGCCCATGCAAG 58.814 43.478 0.00 0.00 40.13 4.01
2284 2743 3.619487 GCAGATTTTTAAGGCCCATGCAA 60.619 43.478 0.00 0.00 40.13 4.08
2285 2744 2.093553 GCAGATTTTTAAGGCCCATGCA 60.094 45.455 0.00 0.00 40.13 3.96
2286 2745 2.169144 AGCAGATTTTTAAGGCCCATGC 59.831 45.455 0.00 0.00 0.00 4.06
2287 2746 5.596836 TTAGCAGATTTTTAAGGCCCATG 57.403 39.130 0.00 0.00 0.00 3.66
2288 2747 6.813293 AATTAGCAGATTTTTAAGGCCCAT 57.187 33.333 0.00 0.00 0.00 4.00
2289 2748 6.619329 AAATTAGCAGATTTTTAAGGCCCA 57.381 33.333 0.00 0.00 0.00 5.36
2290 2749 7.921786 AAAAATTAGCAGATTTTTAAGGCCC 57.078 32.000 16.44 0.00 43.61 5.80
2291 2750 9.430623 TGTAAAAATTAGCAGATTTTTAAGGCC 57.569 29.630 21.47 0.00 45.56 5.19
2297 2756 9.995003 TCACCATGTAAAAATTAGCAGATTTTT 57.005 25.926 19.78 19.78 45.84 1.94
2298 2757 9.995003 TTCACCATGTAAAAATTAGCAGATTTT 57.005 25.926 4.72 4.72 40.06 1.82
2299 2758 9.995003 TTTCACCATGTAAAAATTAGCAGATTT 57.005 25.926 0.00 0.00 0.00 2.17
2300 2759 9.995003 TTTTCACCATGTAAAAATTAGCAGATT 57.005 25.926 0.00 0.00 0.00 2.40
2325 2784 9.927668 CACACCCAGATTTTTAGAAAACATATT 57.072 29.630 0.00 0.00 0.00 1.28
2326 2785 8.034804 GCACACCCAGATTTTTAGAAAACATAT 58.965 33.333 0.00 0.00 0.00 1.78
2327 2786 7.375053 GCACACCCAGATTTTTAGAAAACATA 58.625 34.615 0.00 0.00 0.00 2.29
2328 2787 6.223120 GCACACCCAGATTTTTAGAAAACAT 58.777 36.000 0.00 0.00 0.00 2.71
2329 2788 5.452636 GGCACACCCAGATTTTTAGAAAACA 60.453 40.000 0.00 0.00 0.00 2.83
2330 2789 4.988540 GGCACACCCAGATTTTTAGAAAAC 59.011 41.667 0.00 0.00 0.00 2.43
2331 2790 4.651503 TGGCACACCCAGATTTTTAGAAAA 59.348 37.500 0.00 0.00 39.18 2.29
2332 2791 4.219115 TGGCACACCCAGATTTTTAGAAA 58.781 39.130 0.00 0.00 39.18 2.52
2333 2792 3.838565 TGGCACACCCAGATTTTTAGAA 58.161 40.909 0.00 0.00 39.18 2.10
2334 2793 3.517296 TGGCACACCCAGATTTTTAGA 57.483 42.857 0.00 0.00 39.18 2.10
2352 2811 3.376078 GTGCCAGGTGTGCCATGG 61.376 66.667 7.63 7.63 36.65 3.66
2353 2812 2.598099 TGTGCCAGGTGTGCCATG 60.598 61.111 0.00 0.00 37.19 3.66
2354 2813 2.598394 GTGTGCCAGGTGTGCCAT 60.598 61.111 0.00 0.00 37.19 4.40
2355 2814 4.892965 GGTGTGCCAGGTGTGCCA 62.893 66.667 0.00 0.00 37.19 4.92
2358 2817 4.974721 GGGGGTGTGCCAGGTGTG 62.975 72.222 0.00 0.00 36.17 3.82
2360 2819 4.666253 CAGGGGGTGTGCCAGGTG 62.666 72.222 0.00 0.00 36.17 4.00
2372 2831 1.046472 TCATAGTGCGTACCCAGGGG 61.046 60.000 11.37 6.87 42.03 4.79
2373 2832 0.828022 TTCATAGTGCGTACCCAGGG 59.172 55.000 2.85 2.85 0.00 4.45
2374 2833 2.093658 ACTTTCATAGTGCGTACCCAGG 60.094 50.000 0.00 0.00 35.19 4.45
2375 2834 3.247006 ACTTTCATAGTGCGTACCCAG 57.753 47.619 0.00 0.00 35.19 4.45
2376 2835 3.007074 TGAACTTTCATAGTGCGTACCCA 59.993 43.478 0.00 0.00 34.83 4.51
2377 2836 3.592059 TGAACTTTCATAGTGCGTACCC 58.408 45.455 0.00 0.00 34.83 3.69
2378 2837 3.617263 CCTGAACTTTCATAGTGCGTACC 59.383 47.826 0.00 0.00 34.83 3.34
2379 2838 3.062234 GCCTGAACTTTCATAGTGCGTAC 59.938 47.826 0.00 0.00 34.83 3.67
2380 2839 3.259064 GCCTGAACTTTCATAGTGCGTA 58.741 45.455 0.00 0.00 34.83 4.42
2381 2840 2.076863 GCCTGAACTTTCATAGTGCGT 58.923 47.619 0.00 0.00 34.83 5.24
2382 2841 1.061131 CGCCTGAACTTTCATAGTGCG 59.939 52.381 9.42 9.42 34.83 5.34
2565 3024 2.755836 CAAGGACCACAAACTTGTCG 57.244 50.000 0.00 0.00 39.91 4.35
2642 3101 0.610687 AGCTCAGAACACTAGCCCAC 59.389 55.000 0.00 0.00 36.92 4.61
2644 3103 1.552792 AGAAGCTCAGAACACTAGCCC 59.447 52.381 0.00 0.00 36.92 5.19
2740 3200 0.108585 ACTGTCCCAGCGATGTGTTT 59.891 50.000 0.00 0.00 34.37 2.83
2749 3209 1.339055 TGTGCATCTAACTGTCCCAGC 60.339 52.381 0.00 0.00 34.37 4.85
2770 3232 8.048534 TCTCCTTATCTTTTTCTGCAGATTTG 57.951 34.615 19.04 8.57 31.89 2.32
2774 3236 6.365970 ACTCTCCTTATCTTTTTCTGCAGA 57.634 37.500 13.74 13.74 0.00 4.26
2777 3239 7.440523 TTCAACTCTCCTTATCTTTTTCTGC 57.559 36.000 0.00 0.00 0.00 4.26
2842 3304 9.796180 TGTTAAACTATGGCCTTTTTCTAGTTA 57.204 29.630 3.32 0.00 32.87 2.24
2849 3311 6.322712 TGTCACTGTTAAACTATGGCCTTTTT 59.677 34.615 3.32 0.00 0.00 1.94
2990 3460 5.123820 TGAAGGTTTATGTGCATCTAACTGC 59.876 40.000 0.00 0.00 42.62 4.40
3013 3483 6.966435 TTCAACTTTCTTTTCCTTTTGCTG 57.034 33.333 0.00 0.00 0.00 4.41
3029 3499 6.643360 GGTAACGGTAATTGCAAATTCAACTT 59.357 34.615 1.71 0.00 0.00 2.66
3082 3554 8.050778 TGTCACTATTAAACTATGGCCTTTTG 57.949 34.615 3.32 0.00 0.00 2.44
3100 3574 6.354130 AGTTTCAACTTTTAGCCTGTCACTA 58.646 36.000 0.00 0.00 35.21 2.74
3111 3585 7.971722 GCTGGTGACTTTTAGTTTCAACTTTTA 59.028 33.333 0.00 0.00 40.37 1.52
3113 3587 6.152831 AGCTGGTGACTTTTAGTTTCAACTTT 59.847 34.615 0.00 0.00 40.37 2.66
3114 3588 5.652452 AGCTGGTGACTTTTAGTTTCAACTT 59.348 36.000 0.00 0.00 40.37 2.66
3115 3589 5.193679 AGCTGGTGACTTTTAGTTTCAACT 58.806 37.500 0.00 0.00 42.91 3.16
3116 3590 5.500645 AGCTGGTGACTTTTAGTTTCAAC 57.499 39.130 0.00 0.00 0.00 3.18
3117 3591 7.633193 TTTAGCTGGTGACTTTTAGTTTCAA 57.367 32.000 0.00 0.00 0.00 2.69
3119 3593 7.649057 ACATTTAGCTGGTGACTTTTAGTTTC 58.351 34.615 0.00 0.00 0.00 2.78
3121 3595 7.068226 ACAACATTTAGCTGGTGACTTTTAGTT 59.932 33.333 0.00 0.00 37.29 2.24
3122 3596 6.546034 ACAACATTTAGCTGGTGACTTTTAGT 59.454 34.615 0.00 0.00 37.29 2.24
3123 3597 6.970484 ACAACATTTAGCTGGTGACTTTTAG 58.030 36.000 0.00 0.00 37.29 1.85
3124 3598 6.952773 ACAACATTTAGCTGGTGACTTTTA 57.047 33.333 0.00 0.00 37.29 1.52
3125 3599 5.852282 ACAACATTTAGCTGGTGACTTTT 57.148 34.783 0.00 0.00 37.29 2.27
3126 3600 6.062095 ACTACAACATTTAGCTGGTGACTTT 58.938 36.000 0.00 0.00 37.29 2.66
3130 3846 6.204688 CAGAAACTACAACATTTAGCTGGTGA 59.795 38.462 0.00 0.00 37.29 4.02
3142 3858 8.289618 GCACATAAATTCTCAGAAACTACAACA 58.710 33.333 0.00 0.00 0.00 3.33
3145 3861 9.151471 GTAGCACATAAATTCTCAGAAACTACA 57.849 33.333 0.00 0.00 0.00 2.74
3197 5235 8.735692 TTTTCTTTTAGTTTCGACTTTAGGGA 57.264 30.769 0.00 0.00 0.00 4.20
3286 5324 6.126739 GGAATAGGTTACTGAAGAAGGACCAT 60.127 42.308 0.00 0.00 38.21 3.55
3293 5331 6.497259 AGACACTGGAATAGGTTACTGAAGAA 59.503 38.462 0.00 0.00 0.00 2.52
3295 5333 6.287589 AGACACTGGAATAGGTTACTGAAG 57.712 41.667 0.00 0.00 0.00 3.02
3298 5336 6.817140 GGTTTAGACACTGGAATAGGTTACTG 59.183 42.308 0.00 0.00 0.00 2.74
3319 5379 5.474876 CAGAAGCTTGGACTAAATCTGGTTT 59.525 40.000 2.10 0.00 31.50 3.27
3334 5394 1.000283 AGACGAGGTCACAGAAGCTTG 60.000 52.381 2.10 0.00 34.60 4.01
3430 5490 1.153208 CTGGAGGCCTGAGTGATGC 60.153 63.158 12.00 0.00 0.00 3.91
3438 5498 2.437281 AGTATGTGAATCTGGAGGCCTG 59.563 50.000 12.00 0.00 0.00 4.85
3477 5537 5.801947 CGAAATGATTTTGATGACCAAGTCC 59.198 40.000 0.00 0.00 35.94 3.85
3527 5590 0.311165 CGACCACTCGATTATCGCCT 59.689 55.000 10.02 0.00 43.06 5.52
3529 5592 1.396644 GACGACCACTCGATTATCGC 58.603 55.000 10.02 0.00 43.06 4.58
3546 5609 6.198687 TGTTTTCAGACACAAATTGATCGAC 58.801 36.000 0.00 0.00 0.00 4.20
3586 5649 3.896648 ACTCGTTGGTGCATAAAACAG 57.103 42.857 0.00 0.00 0.00 3.16
3587 5650 3.628032 TGAACTCGTTGGTGCATAAAACA 59.372 39.130 0.00 0.00 0.00 2.83
3588 5651 3.972502 GTGAACTCGTTGGTGCATAAAAC 59.027 43.478 0.00 0.00 0.00 2.43
3589 5652 3.003897 GGTGAACTCGTTGGTGCATAAAA 59.996 43.478 0.00 0.00 0.00 1.52
3590 5653 2.550606 GGTGAACTCGTTGGTGCATAAA 59.449 45.455 0.00 0.00 0.00 1.40
3591 5654 2.147958 GGTGAACTCGTTGGTGCATAA 58.852 47.619 0.00 0.00 0.00 1.90
3592 5655 1.609580 GGGTGAACTCGTTGGTGCATA 60.610 52.381 0.00 0.00 0.00 3.14
3603 5666 1.603739 GGCAGGGTTGGGTGAACTC 60.604 63.158 0.00 0.00 34.90 3.01
3633 5696 8.721478 CAAGCAAACTGATTAACATGTACTAGT 58.279 33.333 0.00 0.00 0.00 2.57
3634 5697 8.721478 ACAAGCAAACTGATTAACATGTACTAG 58.279 33.333 0.00 0.00 0.00 2.57
3635 5698 8.615878 ACAAGCAAACTGATTAACATGTACTA 57.384 30.769 0.00 0.00 0.00 1.82
3656 5719 4.256110 TGCCTCATCAGTACATGAACAAG 58.744 43.478 0.00 0.00 42.53 3.16
3810 5875 2.729194 GAGACACAAGAGGAGGAGCTA 58.271 52.381 0.00 0.00 0.00 3.32
3822 5887 4.438148 TGTCTGAACATTTCGAGACACAA 58.562 39.130 12.92 0.00 40.01 3.33
3847 5912 2.359781 CCACTCTCCTGTCCCTCCTATT 60.360 54.545 0.00 0.00 0.00 1.73
3912 5977 0.179065 TCCTGCAGATGATTCGCCAG 60.179 55.000 17.39 0.00 0.00 4.85
3972 6037 2.672996 GCAATGTCGCCACCACCT 60.673 61.111 0.00 0.00 0.00 4.00
3995 6060 1.069823 CAAGGATCTCTGACCCCATCG 59.930 57.143 0.00 0.00 0.00 3.84
4083 6148 0.665835 TTTTGCAGCACGTTGGGTAG 59.334 50.000 0.00 0.00 0.00 3.18
4092 6187 6.307318 CAGTATTCTGAAGATTTTTGCAGCAC 59.693 38.462 0.00 0.00 43.76 4.40
4178 6292 1.371337 GGCATCGTCATCAGCAGCAA 61.371 55.000 0.00 0.00 0.00 3.91
4179 6293 1.816679 GGCATCGTCATCAGCAGCA 60.817 57.895 0.00 0.00 0.00 4.41
4180 6294 1.371337 TTGGCATCGTCATCAGCAGC 61.371 55.000 0.00 0.00 0.00 5.25
4184 6298 0.376152 GCTGTTGGCATCGTCATCAG 59.624 55.000 2.95 2.95 37.83 2.90
4202 6316 4.906065 TGCTTGGATATTCACTTCATGC 57.094 40.909 0.00 0.00 0.00 4.06
4244 6358 6.018098 CAGCCTCAAGATTCACTGAACATATC 60.018 42.308 0.00 0.00 0.00 1.63
4258 6372 2.544721 TCAGACCTTCAGCCTCAAGAT 58.455 47.619 0.00 0.00 0.00 2.40
4265 6379 1.349357 AGGTTCTTCAGACCTTCAGCC 59.651 52.381 0.00 0.00 0.00 4.85
4290 6405 2.158310 TGGAGACTTGGAGAGGAACAGA 60.158 50.000 0.00 0.00 0.00 3.41
4294 6409 3.045634 TGTTTGGAGACTTGGAGAGGAA 58.954 45.455 0.00 0.00 0.00 3.36
4304 6419 0.403271 AGCATGGCTGTTTGGAGACT 59.597 50.000 0.00 0.00 37.57 3.24
4305 6420 2.113860 TAGCATGGCTGTTTGGAGAC 57.886 50.000 0.07 0.00 40.10 3.36
4306 6421 2.239402 TCATAGCATGGCTGTTTGGAGA 59.761 45.455 0.07 0.00 40.10 3.71
4307 6422 2.646930 TCATAGCATGGCTGTTTGGAG 58.353 47.619 0.07 0.00 40.10 3.86
4308 6423 2.804986 TCATAGCATGGCTGTTTGGA 57.195 45.000 0.07 0.00 40.10 3.53
4309 6424 3.194116 AGTTTCATAGCATGGCTGTTTGG 59.806 43.478 0.07 0.00 40.10 3.28
4310 6425 4.171005 CAGTTTCATAGCATGGCTGTTTG 58.829 43.478 0.07 0.00 40.10 2.93
4311 6426 3.828451 ACAGTTTCATAGCATGGCTGTTT 59.172 39.130 0.07 0.00 40.10 2.83
4312 6427 3.424703 ACAGTTTCATAGCATGGCTGTT 58.575 40.909 0.07 0.00 40.10 3.16
4353 6474 0.106894 GGCTAGTACATGGGGCTGAC 59.893 60.000 0.00 0.00 0.00 3.51
4359 6480 1.507140 TTCAGGGGCTAGTACATGGG 58.493 55.000 0.00 0.00 0.00 4.00
4367 6495 4.713792 AGGTTATTCATTCAGGGGCTAG 57.286 45.455 0.00 0.00 0.00 3.42
4401 6529 8.182881 ACAGAGATTATGTCAACTAACTCGTAC 58.817 37.037 0.00 0.00 0.00 3.67
4404 6533 8.399425 AGTACAGAGATTATGTCAACTAACTCG 58.601 37.037 0.00 0.00 32.02 4.18
4426 6555 4.062991 CACCACAGGACAAGGTTTAGTAC 58.937 47.826 0.00 0.00 32.15 2.73
4427 6556 3.495453 GCACCACAGGACAAGGTTTAGTA 60.495 47.826 0.00 0.00 32.15 1.82
4428 6557 2.748465 GCACCACAGGACAAGGTTTAGT 60.748 50.000 0.00 0.00 32.15 2.24
4429 6558 1.880027 GCACCACAGGACAAGGTTTAG 59.120 52.381 0.00 0.00 32.15 1.85
4430 6559 1.477923 GGCACCACAGGACAAGGTTTA 60.478 52.381 0.00 0.00 32.15 2.01
4431 6560 0.755327 GGCACCACAGGACAAGGTTT 60.755 55.000 0.00 0.00 32.15 3.27
4450 6582 3.754850 TGCAGTGAGTGATGAGAAATTGG 59.245 43.478 0.00 0.00 0.00 3.16
4451 6583 4.454847 AGTGCAGTGAGTGATGAGAAATTG 59.545 41.667 0.00 0.00 0.00 2.32
4453 6585 4.283363 AGTGCAGTGAGTGATGAGAAAT 57.717 40.909 0.00 0.00 0.00 2.17
4455 6587 4.871933 TTAGTGCAGTGAGTGATGAGAA 57.128 40.909 3.69 0.00 0.00 2.87
4456 6588 4.560128 GTTTAGTGCAGTGAGTGATGAGA 58.440 43.478 3.69 0.00 0.00 3.27
4457 6589 3.681897 GGTTTAGTGCAGTGAGTGATGAG 59.318 47.826 3.69 0.00 0.00 2.90
4458 6590 3.070878 TGGTTTAGTGCAGTGAGTGATGA 59.929 43.478 3.69 0.00 0.00 2.92
4459 6591 3.402110 TGGTTTAGTGCAGTGAGTGATG 58.598 45.455 3.69 0.00 0.00 3.07
4460 6592 3.769739 TGGTTTAGTGCAGTGAGTGAT 57.230 42.857 3.69 0.00 0.00 3.06
4462 6594 3.206150 ACTTGGTTTAGTGCAGTGAGTG 58.794 45.455 3.69 0.00 0.00 3.51
4463 6595 3.467803 GACTTGGTTTAGTGCAGTGAGT 58.532 45.455 3.69 0.00 0.00 3.41
4464 6596 2.808543 GGACTTGGTTTAGTGCAGTGAG 59.191 50.000 3.69 0.00 36.59 3.51
4465 6597 2.438021 AGGACTTGGTTTAGTGCAGTGA 59.562 45.455 3.69 0.00 38.77 3.41
4466 6598 2.549754 CAGGACTTGGTTTAGTGCAGTG 59.450 50.000 3.69 0.00 38.77 3.66
4468 6600 3.126001 TCAGGACTTGGTTTAGTGCAG 57.874 47.619 0.00 0.00 38.77 4.41
4469 6601 3.072330 TGATCAGGACTTGGTTTAGTGCA 59.928 43.478 0.00 0.00 38.77 4.57
4508 6640 7.814264 ATAAATCTCGCAGGATCAAGAAATT 57.186 32.000 0.00 0.00 0.00 1.82
4514 6646 5.034852 TCCAATAAATCTCGCAGGATCAA 57.965 39.130 0.00 0.00 0.00 2.57
4533 6665 3.920031 CGATCCACGGAGTCTCCA 58.080 61.111 19.15 0.00 41.61 3.86
4600 6732 1.145119 GTCCCACCTCCCTGAAAGTTT 59.855 52.381 0.00 0.00 0.00 2.66
4651 6787 3.744238 AATCGTTTTCTGGGTTTTGGG 57.256 42.857 0.00 0.00 0.00 4.12
4711 6847 6.273730 TGACCTTTCTTTTCTTATAGGGGTGA 59.726 38.462 0.00 0.00 0.00 4.02
4714 6850 7.283354 GTGATGACCTTTCTTTTCTTATAGGGG 59.717 40.741 0.00 0.00 0.00 4.79
4727 6868 1.336887 CGACGTGGTGATGACCTTTCT 60.337 52.381 2.11 0.00 43.58 2.52
4728 6869 1.068474 CGACGTGGTGATGACCTTTC 58.932 55.000 2.11 0.00 43.58 2.62
4729 6870 0.677288 TCGACGTGGTGATGACCTTT 59.323 50.000 2.11 0.00 43.58 3.11
4730 6871 0.038526 GTCGACGTGGTGATGACCTT 60.039 55.000 2.11 0.00 43.58 3.50
4731 6872 1.585006 GTCGACGTGGTGATGACCT 59.415 57.895 2.11 0.00 43.58 3.85
4773 6914 2.187946 CTCACCGGCCTGATCACC 59.812 66.667 0.00 0.00 0.00 4.02
4811 6952 3.303049 TCCCCCTCGGTTAGAATTAGAC 58.697 50.000 0.00 0.00 0.00 2.59
4815 6956 1.508256 CCTCCCCCTCGGTTAGAATT 58.492 55.000 0.00 0.00 0.00 2.17
4816 6957 0.400093 CCCTCCCCCTCGGTTAGAAT 60.400 60.000 0.00 0.00 0.00 2.40
4817 6958 1.002533 CCCTCCCCCTCGGTTAGAA 59.997 63.158 0.00 0.00 0.00 2.10
4818 6959 1.937528 TCCCTCCCCCTCGGTTAGA 60.938 63.158 0.00 0.00 0.00 2.10
4819 6960 1.457831 CTCCCTCCCCCTCGGTTAG 60.458 68.421 0.00 0.00 0.00 2.34
4820 6961 2.694305 CTCCCTCCCCCTCGGTTA 59.306 66.667 0.00 0.00 0.00 2.85
4825 6966 1.694525 CCTTTCCTCCCTCCCCCTC 60.695 68.421 0.00 0.00 0.00 4.30
4831 6972 1.483004 GTAGAGCACCTTTCCTCCCTC 59.517 57.143 0.00 0.00 0.00 4.30
4974 7116 0.401738 CCTCCCTCTGAAAGCAACCA 59.598 55.000 0.00 0.00 0.00 3.67
5037 7185 2.354805 GGAGGTTTGATTACGGCTGACT 60.355 50.000 0.00 0.00 0.00 3.41
5039 7187 1.906574 AGGAGGTTTGATTACGGCTGA 59.093 47.619 0.00 0.00 0.00 4.26
5091 7239 7.554835 TGCCCAAACGATATAAAACAATCTAGT 59.445 33.333 0.00 0.00 0.00 2.57
5092 7240 7.925993 TGCCCAAACGATATAAAACAATCTAG 58.074 34.615 0.00 0.00 0.00 2.43
5093 7241 7.867305 TGCCCAAACGATATAAAACAATCTA 57.133 32.000 0.00 0.00 0.00 1.98
5094 7242 6.767524 TGCCCAAACGATATAAAACAATCT 57.232 33.333 0.00 0.00 0.00 2.40
5095 7243 6.978080 ACATGCCCAAACGATATAAAACAATC 59.022 34.615 0.00 0.00 0.00 2.67
5096 7244 6.872920 ACATGCCCAAACGATATAAAACAAT 58.127 32.000 0.00 0.00 0.00 2.71
5169 7317 1.821136 GCTTGCTTAAGGGCTCAACAT 59.179 47.619 4.29 0.00 0.00 2.71
5172 7320 1.820519 CATGCTTGCTTAAGGGCTCAA 59.179 47.619 4.29 0.00 0.00 3.02
5174 7322 1.755179 TCATGCTTGCTTAAGGGCTC 58.245 50.000 4.29 0.00 0.00 4.70
5177 7325 3.548770 TCAGATCATGCTTGCTTAAGGG 58.451 45.455 4.29 0.00 0.00 3.95
5235 7383 5.882557 ACTACTTAATGATTGAGCCAACCTG 59.117 40.000 0.00 0.00 0.00 4.00
5260 7408 1.448922 GGGCAACACGCTGTTTACCA 61.449 55.000 15.34 0.00 38.77 3.25
5291 7439 4.563168 CCCATTTGAGGCTGCAATTTACAA 60.563 41.667 0.50 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.