Multiple sequence alignment - TraesCS1D01G070100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G070100 chr1D 100.000 2429 0 0 1 2429 50918012 50915584 0.000000e+00 4486
1 TraesCS1D01G070100 chr5B 87.766 1079 89 19 452 1507 45707752 45706694 0.000000e+00 1221
2 TraesCS1D01G070100 chr5B 88.889 621 54 9 1509 2125 45706596 45705987 0.000000e+00 750
3 TraesCS1D01G070100 chr5B 91.724 145 7 2 2290 2429 318284234 318284378 1.910000e-46 196
4 TraesCS1D01G070100 chr5B 95.946 74 3 0 255 328 45708110 45708037 1.180000e-23 121
5 TraesCS1D01G070100 chr1A 84.915 1180 83 32 480 1602 49973919 49972778 0.000000e+00 1105
6 TraesCS1D01G070100 chr1A 90.633 758 55 8 1681 2429 49972282 49971532 0.000000e+00 992
7 TraesCS1D01G070100 chr1A 93.254 252 17 0 4 255 551867639 551867388 2.950000e-99 372
8 TraesCS1D01G070100 chr1A 94.382 89 3 2 1601 1689 49972702 49972616 4.210000e-28 135
9 TraesCS1D01G070100 chr3D 96.899 258 8 0 1 258 590244578 590244321 1.330000e-117 433
10 TraesCS1D01G070100 chr6D 96.109 257 9 1 1 256 364107664 364107408 3.740000e-113 418
11 TraesCS1D01G070100 chr6D 95.312 256 11 1 1 255 14480695 14480440 2.910000e-109 405
12 TraesCS1D01G070100 chr4D 95.686 255 11 0 1 255 150431496 150431750 6.250000e-111 411
13 TraesCS1D01G070100 chr2B 95.312 256 11 1 1 255 786507103 786506848 2.910000e-109 405
14 TraesCS1D01G070100 chr7B 93.846 260 15 1 1 260 667874906 667874648 8.140000e-105 390
15 TraesCS1D01G070100 chr1B 94.141 256 14 1 1 255 136582864 136583119 2.930000e-104 388
16 TraesCS1D01G070100 chr1B 87.023 131 14 2 2164 2292 72014003 72014132 7.000000e-31 145
17 TraesCS1D01G070100 chr3B 92.337 261 20 0 1 261 507281656 507281916 2.950000e-99 372
18 TraesCS1D01G070100 chr5A 91.489 141 10 1 2289 2429 372155752 372155614 2.460000e-45 193
19 TraesCS1D01G070100 chr7A 87.857 140 13 2 2293 2429 637172531 637172669 6.950000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G070100 chr1D 50915584 50918012 2428 True 4486.000000 4486 100.000000 1 2429 1 chr1D.!!$R1 2428
1 TraesCS1D01G070100 chr5B 45705987 45708110 2123 True 697.333333 1221 90.867000 255 2125 3 chr5B.!!$R1 1870
2 TraesCS1D01G070100 chr1A 49971532 49973919 2387 True 744.000000 1105 89.976667 480 2429 3 chr1A.!!$R2 1949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.103208 AGCACGCTTTATCTCTCGGG 59.897 55.0 0.0 0.0 0.00 5.14 F
179 180 0.170339 GTCGCCATGTTTGGTTAGGC 59.830 55.0 0.0 0.0 45.57 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1408 1721 0.035820 TAGTTCCAACGGTCCATGCC 60.036 55.0 0.00 0.00 0.00 4.40 R
1987 2822 0.736636 GCTGCATGCTGCTGATTACA 59.263 50.0 34.29 4.66 45.31 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.650608 GACGACATCCAACAGCAAAAC 58.349 47.619 0.00 0.00 0.00 2.43
21 22 2.020720 ACGACATCCAACAGCAAAACA 58.979 42.857 0.00 0.00 0.00 2.83
22 23 2.425312 ACGACATCCAACAGCAAAACAA 59.575 40.909 0.00 0.00 0.00 2.83
23 24 3.119316 ACGACATCCAACAGCAAAACAAA 60.119 39.130 0.00 0.00 0.00 2.83
24 25 3.486841 CGACATCCAACAGCAAAACAAAG 59.513 43.478 0.00 0.00 0.00 2.77
25 26 3.795877 ACATCCAACAGCAAAACAAAGG 58.204 40.909 0.00 0.00 0.00 3.11
26 27 3.450457 ACATCCAACAGCAAAACAAAGGA 59.550 39.130 0.00 0.00 0.00 3.36
27 28 4.081198 ACATCCAACAGCAAAACAAAGGAA 60.081 37.500 0.00 0.00 0.00 3.36
28 29 4.122143 TCCAACAGCAAAACAAAGGAAG 57.878 40.909 0.00 0.00 0.00 3.46
29 30 2.609002 CCAACAGCAAAACAAAGGAAGC 59.391 45.455 0.00 0.00 0.00 3.86
30 31 3.524541 CAACAGCAAAACAAAGGAAGCT 58.475 40.909 0.00 0.00 0.00 3.74
31 32 4.441356 CCAACAGCAAAACAAAGGAAGCTA 60.441 41.667 0.00 0.00 0.00 3.32
32 33 4.307443 ACAGCAAAACAAAGGAAGCTAC 57.693 40.909 0.00 0.00 0.00 3.58
33 34 3.243068 ACAGCAAAACAAAGGAAGCTACG 60.243 43.478 0.00 0.00 0.00 3.51
34 35 2.293399 AGCAAAACAAAGGAAGCTACGG 59.707 45.455 0.00 0.00 0.00 4.02
35 36 2.607038 GCAAAACAAAGGAAGCTACGGG 60.607 50.000 0.00 0.00 0.00 5.28
36 37 1.905637 AAACAAAGGAAGCTACGGGG 58.094 50.000 0.00 0.00 0.00 5.73
37 38 0.608308 AACAAAGGAAGCTACGGGGC 60.608 55.000 0.00 0.00 0.00 5.80
38 39 1.002624 CAAAGGAAGCTACGGGGCA 60.003 57.895 4.81 0.00 34.17 5.36
39 40 0.608035 CAAAGGAAGCTACGGGGCAA 60.608 55.000 4.81 0.00 34.17 4.52
40 41 0.331616 AAAGGAAGCTACGGGGCAAT 59.668 50.000 4.81 0.00 34.17 3.56
41 42 0.331616 AAGGAAGCTACGGGGCAATT 59.668 50.000 4.81 0.00 34.17 2.32
42 43 0.394352 AGGAAGCTACGGGGCAATTG 60.394 55.000 0.00 0.00 34.17 2.32
43 44 1.433471 GAAGCTACGGGGCAATTGC 59.567 57.895 22.47 22.47 41.14 3.56
44 45 1.304052 AAGCTACGGGGCAATTGCA 60.304 52.632 30.32 9.89 44.36 4.08
45 46 1.595093 AAGCTACGGGGCAATTGCAC 61.595 55.000 30.32 27.77 45.53 4.57
54 55 2.975266 GGGCAATTGCACATGAAATCA 58.025 42.857 30.32 0.00 45.57 2.57
55 56 3.537580 GGGCAATTGCACATGAAATCAT 58.462 40.909 30.32 0.00 45.57 2.45
56 57 4.695396 GGGCAATTGCACATGAAATCATA 58.305 39.130 30.32 0.00 45.57 2.15
57 58 4.508861 GGGCAATTGCACATGAAATCATAC 59.491 41.667 30.32 8.68 45.57 2.39
58 59 5.110598 GGCAATTGCACATGAAATCATACA 58.889 37.500 30.32 0.00 44.36 2.29
59 60 5.581479 GGCAATTGCACATGAAATCATACAA 59.419 36.000 30.32 2.57 44.36 2.41
60 61 6.455913 GGCAATTGCACATGAAATCATACAAC 60.456 38.462 30.32 3.97 44.36 3.32
61 62 6.091034 GCAATTGCACATGAAATCATACAACA 59.909 34.615 25.36 0.00 41.59 3.33
62 63 7.201574 GCAATTGCACATGAAATCATACAACAT 60.202 33.333 25.36 0.00 41.59 2.71
63 64 9.303537 CAATTGCACATGAAATCATACAACATA 57.696 29.630 0.00 0.00 34.26 2.29
64 65 9.524106 AATTGCACATGAAATCATACAACATAG 57.476 29.630 0.00 0.00 34.26 2.23
65 66 7.030075 TGCACATGAAATCATACAACATAGG 57.970 36.000 0.00 0.00 34.26 2.57
66 67 6.602803 TGCACATGAAATCATACAACATAGGT 59.397 34.615 0.00 0.00 34.26 3.08
67 68 7.134815 GCACATGAAATCATACAACATAGGTC 58.865 38.462 0.00 0.00 34.26 3.85
68 69 7.012704 GCACATGAAATCATACAACATAGGTCT 59.987 37.037 0.00 0.00 34.26 3.85
69 70 8.340443 CACATGAAATCATACAACATAGGTCTG 58.660 37.037 0.00 0.00 34.26 3.51
70 71 8.267183 ACATGAAATCATACAACATAGGTCTGA 58.733 33.333 0.00 0.00 34.26 3.27
71 72 9.112725 CATGAAATCATACAACATAGGTCTGAA 57.887 33.333 0.00 0.00 34.26 3.02
72 73 9.857656 ATGAAATCATACAACATAGGTCTGAAT 57.142 29.630 0.00 0.00 34.26 2.57
73 74 9.685276 TGAAATCATACAACATAGGTCTGAATT 57.315 29.630 0.00 0.00 0.00 2.17
76 77 9.685276 AATCATACAACATAGGTCTGAATTTGA 57.315 29.630 0.00 0.00 0.00 2.69
77 78 8.722480 TCATACAACATAGGTCTGAATTTGAG 57.278 34.615 0.00 0.00 0.00 3.02
78 79 7.770433 TCATACAACATAGGTCTGAATTTGAGG 59.230 37.037 0.00 0.00 0.00 3.86
79 80 4.702131 ACAACATAGGTCTGAATTTGAGGC 59.298 41.667 0.00 0.00 0.00 4.70
80 81 4.851639 ACATAGGTCTGAATTTGAGGCT 57.148 40.909 0.00 0.00 0.00 4.58
81 82 5.184892 ACATAGGTCTGAATTTGAGGCTT 57.815 39.130 0.00 0.00 0.00 4.35
82 83 4.946157 ACATAGGTCTGAATTTGAGGCTTG 59.054 41.667 0.00 0.00 0.00 4.01
83 84 3.515602 AGGTCTGAATTTGAGGCTTGT 57.484 42.857 0.00 0.00 0.00 3.16
84 85 4.640771 AGGTCTGAATTTGAGGCTTGTA 57.359 40.909 0.00 0.00 0.00 2.41
85 86 4.985538 AGGTCTGAATTTGAGGCTTGTAA 58.014 39.130 0.00 0.00 0.00 2.41
86 87 5.574188 AGGTCTGAATTTGAGGCTTGTAAT 58.426 37.500 0.00 0.00 0.00 1.89
87 88 6.721318 AGGTCTGAATTTGAGGCTTGTAATA 58.279 36.000 0.00 0.00 0.00 0.98
88 89 7.349598 AGGTCTGAATTTGAGGCTTGTAATAT 58.650 34.615 0.00 0.00 0.00 1.28
89 90 8.494433 AGGTCTGAATTTGAGGCTTGTAATATA 58.506 33.333 0.00 0.00 0.00 0.86
90 91 8.560374 GGTCTGAATTTGAGGCTTGTAATATAC 58.440 37.037 0.00 0.00 0.00 1.47
91 92 9.331282 GTCTGAATTTGAGGCTTGTAATATACT 57.669 33.333 0.00 0.00 0.00 2.12
92 93 9.905713 TCTGAATTTGAGGCTTGTAATATACTT 57.094 29.630 0.00 0.00 0.00 2.24
94 95 9.679661 TGAATTTGAGGCTTGTAATATACTTCA 57.320 29.630 0.00 0.00 0.00 3.02
95 96 9.937175 GAATTTGAGGCTTGTAATATACTTCAC 57.063 33.333 0.00 0.00 0.00 3.18
96 97 7.534085 TTTGAGGCTTGTAATATACTTCACG 57.466 36.000 0.00 0.00 0.00 4.35
97 98 6.459670 TGAGGCTTGTAATATACTTCACGA 57.540 37.500 0.00 0.00 0.00 4.35
98 99 6.869695 TGAGGCTTGTAATATACTTCACGAA 58.130 36.000 0.00 0.00 0.00 3.85
99 100 7.497595 TGAGGCTTGTAATATACTTCACGAAT 58.502 34.615 0.00 0.00 0.00 3.34
100 101 7.985184 TGAGGCTTGTAATATACTTCACGAATT 59.015 33.333 0.00 0.00 0.00 2.17
101 102 8.732746 AGGCTTGTAATATACTTCACGAATTT 57.267 30.769 0.00 0.00 0.00 1.82
102 103 9.826574 AGGCTTGTAATATACTTCACGAATTTA 57.173 29.630 0.00 0.00 0.00 1.40
110 111 6.814076 ATACTTCACGAATTTAGAAGCTCG 57.186 37.500 12.57 0.00 41.80 5.03
111 112 4.806330 ACTTCACGAATTTAGAAGCTCGA 58.194 39.130 12.57 0.00 41.80 4.04
112 113 5.227908 ACTTCACGAATTTAGAAGCTCGAA 58.772 37.500 12.57 0.00 41.80 3.71
113 114 5.869888 ACTTCACGAATTTAGAAGCTCGAAT 59.130 36.000 12.57 0.00 41.80 3.34
114 115 7.033791 ACTTCACGAATTTAGAAGCTCGAATA 58.966 34.615 12.57 0.00 41.80 1.75
115 116 7.707035 ACTTCACGAATTTAGAAGCTCGAATAT 59.293 33.333 12.57 0.00 41.80 1.28
116 117 7.624706 TCACGAATTTAGAAGCTCGAATATC 57.375 36.000 0.00 0.00 35.34 1.63
117 118 6.359883 TCACGAATTTAGAAGCTCGAATATCG 59.640 38.462 0.00 0.00 42.10 2.92
128 129 3.793797 TCGAATATCGAGGCTCACAAA 57.206 42.857 15.95 0.00 44.82 2.83
129 130 3.444916 TCGAATATCGAGGCTCACAAAC 58.555 45.455 15.95 0.29 44.82 2.93
130 131 3.130516 TCGAATATCGAGGCTCACAAACT 59.869 43.478 15.95 0.00 44.82 2.66
131 132 4.337274 TCGAATATCGAGGCTCACAAACTA 59.663 41.667 15.95 0.00 44.82 2.24
132 133 4.677378 CGAATATCGAGGCTCACAAACTAG 59.323 45.833 15.95 0.00 43.74 2.57
133 134 2.969628 ATCGAGGCTCACAAACTAGG 57.030 50.000 15.95 0.00 0.00 3.02
134 135 1.919240 TCGAGGCTCACAAACTAGGA 58.081 50.000 15.95 0.00 0.00 2.94
135 136 2.244695 TCGAGGCTCACAAACTAGGAA 58.755 47.619 15.95 0.00 0.00 3.36
136 137 2.631062 TCGAGGCTCACAAACTAGGAAA 59.369 45.455 15.95 0.00 0.00 3.13
137 138 2.996621 CGAGGCTCACAAACTAGGAAAG 59.003 50.000 15.95 0.00 0.00 2.62
138 139 2.744741 GAGGCTCACAAACTAGGAAAGC 59.255 50.000 10.25 0.00 0.00 3.51
139 140 2.106511 AGGCTCACAAACTAGGAAAGCA 59.893 45.455 0.00 0.00 0.00 3.91
140 141 2.226674 GGCTCACAAACTAGGAAAGCAC 59.773 50.000 0.00 0.00 0.00 4.40
141 142 2.096218 GCTCACAAACTAGGAAAGCACG 60.096 50.000 0.00 0.00 0.00 5.34
142 143 1.871039 TCACAAACTAGGAAAGCACGC 59.129 47.619 0.00 0.00 0.00 5.34
143 144 1.873591 CACAAACTAGGAAAGCACGCT 59.126 47.619 0.00 0.00 0.00 5.07
144 145 2.290641 CACAAACTAGGAAAGCACGCTT 59.709 45.455 0.00 0.00 37.98 4.68
146 147 4.024387 CACAAACTAGGAAAGCACGCTTTA 60.024 41.667 16.56 1.48 45.16 1.85
147 148 4.760204 ACAAACTAGGAAAGCACGCTTTAT 59.240 37.500 16.56 11.06 45.16 1.40
148 149 5.106673 ACAAACTAGGAAAGCACGCTTTATC 60.107 40.000 16.56 11.88 45.16 1.75
149 150 4.473477 ACTAGGAAAGCACGCTTTATCT 57.527 40.909 16.56 17.39 45.16 1.98
150 151 4.434520 ACTAGGAAAGCACGCTTTATCTC 58.565 43.478 16.56 4.96 45.16 2.75
151 152 3.618690 AGGAAAGCACGCTTTATCTCT 57.381 42.857 16.56 9.40 45.16 3.10
152 153 3.526534 AGGAAAGCACGCTTTATCTCTC 58.473 45.455 16.56 3.92 45.16 3.20
153 154 2.282820 GGAAAGCACGCTTTATCTCTCG 59.717 50.000 16.56 0.00 45.16 4.04
154 155 1.927895 AAGCACGCTTTATCTCTCGG 58.072 50.000 0.00 0.00 31.29 4.63
155 156 0.103208 AGCACGCTTTATCTCTCGGG 59.897 55.000 0.00 0.00 0.00 5.14
156 157 0.876342 GCACGCTTTATCTCTCGGGG 60.876 60.000 0.00 0.00 0.00 5.73
157 158 0.460311 CACGCTTTATCTCTCGGGGT 59.540 55.000 0.00 0.00 0.00 4.95
158 159 1.134788 CACGCTTTATCTCTCGGGGTT 60.135 52.381 0.00 0.00 0.00 4.11
159 160 1.134788 ACGCTTTATCTCTCGGGGTTG 60.135 52.381 0.00 0.00 0.00 3.77
160 161 1.806623 CGCTTTATCTCTCGGGGTTGG 60.807 57.143 0.00 0.00 0.00 3.77
161 162 1.209747 GCTTTATCTCTCGGGGTTGGT 59.790 52.381 0.00 0.00 0.00 3.67
162 163 2.742204 GCTTTATCTCTCGGGGTTGGTC 60.742 54.545 0.00 0.00 0.00 4.02
163 164 1.108776 TTATCTCTCGGGGTTGGTCG 58.891 55.000 0.00 0.00 0.00 4.79
164 165 1.389609 TATCTCTCGGGGTTGGTCGC 61.390 60.000 0.00 0.00 0.00 5.19
165 166 4.452733 CTCTCGGGGTTGGTCGCC 62.453 72.222 0.00 0.00 44.44 5.54
170 171 2.282887 GGGGTTGGTCGCCATGTT 60.283 61.111 0.00 0.00 46.70 2.71
171 172 1.906333 GGGGTTGGTCGCCATGTTT 60.906 57.895 0.00 0.00 46.70 2.83
172 173 1.288752 GGGTTGGTCGCCATGTTTG 59.711 57.895 0.00 0.00 31.53 2.93
173 174 1.288752 GGTTGGTCGCCATGTTTGG 59.711 57.895 0.00 0.00 46.66 3.28
174 175 1.460273 GGTTGGTCGCCATGTTTGGT 61.460 55.000 0.00 0.00 45.57 3.67
175 176 0.387565 GTTGGTCGCCATGTTTGGTT 59.612 50.000 0.00 0.00 45.57 3.67
176 177 1.609555 GTTGGTCGCCATGTTTGGTTA 59.390 47.619 0.00 0.00 45.57 2.85
177 178 1.529226 TGGTCGCCATGTTTGGTTAG 58.471 50.000 0.00 0.00 45.57 2.34
178 179 0.808755 GGTCGCCATGTTTGGTTAGG 59.191 55.000 0.00 0.00 45.57 2.69
179 180 0.170339 GTCGCCATGTTTGGTTAGGC 59.830 55.000 0.00 0.00 45.57 3.93
180 181 0.963355 TCGCCATGTTTGGTTAGGCC 60.963 55.000 0.00 0.00 45.57 5.19
181 182 1.247419 CGCCATGTTTGGTTAGGCCA 61.247 55.000 5.01 0.00 45.57 5.36
188 189 2.438795 TGGTTAGGCCAGCCCAAC 59.561 61.111 11.03 11.03 43.61 3.77
189 190 2.438795 GGTTAGGCCAGCCCAACA 59.561 61.111 19.36 0.00 37.17 3.33
190 191 1.228737 GGTTAGGCCAGCCCAACAA 60.229 57.895 19.36 1.16 37.17 2.83
191 192 0.614697 GGTTAGGCCAGCCCAACAAT 60.615 55.000 19.36 0.00 37.17 2.71
192 193 0.817654 GTTAGGCCAGCCCAACAATC 59.182 55.000 14.07 0.00 36.58 2.67
193 194 0.704076 TTAGGCCAGCCCAACAATCT 59.296 50.000 5.01 0.00 36.58 2.40
194 195 0.704076 TAGGCCAGCCCAACAATCTT 59.296 50.000 5.01 0.00 36.58 2.40
195 196 0.901580 AGGCCAGCCCAACAATCTTG 60.902 55.000 5.01 0.00 36.58 3.02
196 197 0.899717 GGCCAGCCCAACAATCTTGA 60.900 55.000 0.00 0.00 0.00 3.02
197 198 1.188863 GCCAGCCCAACAATCTTGAT 58.811 50.000 0.00 0.00 0.00 2.57
198 199 1.551883 GCCAGCCCAACAATCTTGATT 59.448 47.619 0.00 0.00 0.00 2.57
199 200 2.027837 GCCAGCCCAACAATCTTGATTT 60.028 45.455 0.00 0.00 0.00 2.17
200 201 3.853475 CCAGCCCAACAATCTTGATTTC 58.147 45.455 0.00 0.00 0.00 2.17
201 202 3.504863 CAGCCCAACAATCTTGATTTCG 58.495 45.455 0.00 0.00 0.00 3.46
202 203 3.057315 CAGCCCAACAATCTTGATTTCGT 60.057 43.478 0.00 0.00 0.00 3.85
203 204 3.191371 AGCCCAACAATCTTGATTTCGTC 59.809 43.478 0.00 0.00 0.00 4.20
204 205 3.673323 GCCCAACAATCTTGATTTCGTCC 60.673 47.826 0.00 0.00 0.00 4.79
205 206 3.119495 CCCAACAATCTTGATTTCGTCCC 60.119 47.826 0.00 0.00 0.00 4.46
206 207 3.758554 CCAACAATCTTGATTTCGTCCCT 59.241 43.478 0.00 0.00 0.00 4.20
207 208 4.379813 CCAACAATCTTGATTTCGTCCCTG 60.380 45.833 0.00 0.00 0.00 4.45
208 209 4.021102 ACAATCTTGATTTCGTCCCTGT 57.979 40.909 0.00 0.00 0.00 4.00
209 210 5.160607 ACAATCTTGATTTCGTCCCTGTA 57.839 39.130 0.00 0.00 0.00 2.74
210 211 5.556915 ACAATCTTGATTTCGTCCCTGTAA 58.443 37.500 0.00 0.00 0.00 2.41
211 212 6.001460 ACAATCTTGATTTCGTCCCTGTAAA 58.999 36.000 0.00 0.00 0.00 2.01
212 213 6.072673 ACAATCTTGATTTCGTCCCTGTAAAC 60.073 38.462 0.00 0.00 0.00 2.01
213 214 4.963373 TCTTGATTTCGTCCCTGTAAACA 58.037 39.130 0.00 0.00 0.00 2.83
214 215 5.556915 TCTTGATTTCGTCCCTGTAAACAT 58.443 37.500 0.00 0.00 0.00 2.71
215 216 6.001460 TCTTGATTTCGTCCCTGTAAACATT 58.999 36.000 0.00 0.00 0.00 2.71
216 217 5.621197 TGATTTCGTCCCTGTAAACATTG 57.379 39.130 0.00 0.00 0.00 2.82
217 218 5.067273 TGATTTCGTCCCTGTAAACATTGT 58.933 37.500 0.00 0.00 0.00 2.71
218 219 4.822036 TTTCGTCCCTGTAAACATTGTG 57.178 40.909 0.00 0.00 0.00 3.33
219 220 3.755112 TCGTCCCTGTAAACATTGTGA 57.245 42.857 0.00 0.00 0.00 3.58
220 221 3.395639 TCGTCCCTGTAAACATTGTGAC 58.604 45.455 0.00 0.00 0.00 3.67
221 222 2.156891 CGTCCCTGTAAACATTGTGACG 59.843 50.000 8.54 8.54 38.42 4.35
222 223 3.395639 GTCCCTGTAAACATTGTGACGA 58.604 45.455 0.00 0.00 0.00 4.20
223 224 4.000988 GTCCCTGTAAACATTGTGACGAT 58.999 43.478 0.00 0.00 0.00 3.73
224 225 4.000325 TCCCTGTAAACATTGTGACGATG 59.000 43.478 11.19 11.19 0.00 3.84
225 226 3.751175 CCCTGTAAACATTGTGACGATGT 59.249 43.478 12.58 12.58 39.31 3.06
226 227 4.932799 CCCTGTAAACATTGTGACGATGTA 59.067 41.667 18.17 1.69 36.76 2.29
227 228 5.410132 CCCTGTAAACATTGTGACGATGTAA 59.590 40.000 18.17 7.70 36.76 2.41
228 229 6.093495 CCCTGTAAACATTGTGACGATGTAAT 59.907 38.462 18.17 12.73 36.76 1.89
229 230 7.279090 CCCTGTAAACATTGTGACGATGTAATA 59.721 37.037 18.17 11.84 36.76 0.98
230 231 8.661257 CCTGTAAACATTGTGACGATGTAATAA 58.339 33.333 18.17 5.29 36.76 1.40
233 234 8.995906 GTAAACATTGTGACGATGTAATAAAGC 58.004 33.333 18.17 2.79 36.76 3.51
234 235 6.985188 ACATTGTGACGATGTAATAAAGCT 57.015 33.333 16.52 0.00 36.04 3.74
235 236 7.377766 ACATTGTGACGATGTAATAAAGCTT 57.622 32.000 16.52 0.00 36.04 3.74
236 237 7.816640 ACATTGTGACGATGTAATAAAGCTTT 58.183 30.769 16.52 17.30 36.04 3.51
237 238 7.750458 ACATTGTGACGATGTAATAAAGCTTTG 59.250 33.333 22.02 4.70 36.04 2.77
238 239 5.627172 TGTGACGATGTAATAAAGCTTTGC 58.373 37.500 22.02 9.47 0.00 3.68
239 240 5.180304 TGTGACGATGTAATAAAGCTTTGCA 59.820 36.000 22.02 14.37 0.00 4.08
240 241 5.734498 GTGACGATGTAATAAAGCTTTGCAG 59.266 40.000 22.02 6.78 0.00 4.41
241 242 5.411361 TGACGATGTAATAAAGCTTTGCAGT 59.589 36.000 22.02 4.53 0.00 4.40
242 243 6.072728 TGACGATGTAATAAAGCTTTGCAGTT 60.073 34.615 22.02 12.67 0.00 3.16
243 244 6.677913 ACGATGTAATAAAGCTTTGCAGTTT 58.322 32.000 22.02 9.51 0.00 2.66
244 245 6.582295 ACGATGTAATAAAGCTTTGCAGTTTG 59.418 34.615 22.02 7.83 0.00 2.93
245 246 6.582295 CGATGTAATAAAGCTTTGCAGTTTGT 59.418 34.615 22.02 1.12 0.00 2.83
246 247 7.201266 CGATGTAATAAAGCTTTGCAGTTTGTC 60.201 37.037 22.02 9.01 0.00 3.18
247 248 7.038154 TGTAATAAAGCTTTGCAGTTTGTCT 57.962 32.000 22.02 0.00 0.00 3.41
248 249 8.160521 TGTAATAAAGCTTTGCAGTTTGTCTA 57.839 30.769 22.02 0.00 0.00 2.59
249 250 8.625651 TGTAATAAAGCTTTGCAGTTTGTCTAA 58.374 29.630 22.02 0.00 0.00 2.10
250 251 9.458374 GTAATAAAGCTTTGCAGTTTGTCTAAA 57.542 29.630 22.02 0.00 0.00 1.85
251 252 8.940768 AATAAAGCTTTGCAGTTTGTCTAAAA 57.059 26.923 22.02 0.00 0.00 1.52
252 253 8.940768 ATAAAGCTTTGCAGTTTGTCTAAAAA 57.059 26.923 22.02 0.00 0.00 1.94
270 271 2.951457 AAAACAAATTATCGCCGGGG 57.049 45.000 13.31 13.31 0.00 5.73
312 313 0.250597 ACGGGTTTGGTAAGAGCACC 60.251 55.000 0.00 0.00 39.20 5.01
328 329 0.839277 CACCCCATCTCCTGCACATA 59.161 55.000 0.00 0.00 0.00 2.29
329 330 1.212688 CACCCCATCTCCTGCACATAA 59.787 52.381 0.00 0.00 0.00 1.90
330 331 1.922447 ACCCCATCTCCTGCACATAAA 59.078 47.619 0.00 0.00 0.00 1.40
331 332 2.092212 ACCCCATCTCCTGCACATAAAG 60.092 50.000 0.00 0.00 0.00 1.85
332 333 1.952296 CCCATCTCCTGCACATAAAGC 59.048 52.381 0.00 0.00 0.00 3.51
333 334 2.646930 CCATCTCCTGCACATAAAGCA 58.353 47.619 0.00 0.00 40.19 3.91
334 335 3.018856 CCATCTCCTGCACATAAAGCAA 58.981 45.455 0.00 0.00 42.17 3.91
335 336 3.444742 CCATCTCCTGCACATAAAGCAAA 59.555 43.478 0.00 0.00 42.17 3.68
336 337 4.418392 CATCTCCTGCACATAAAGCAAAC 58.582 43.478 0.00 0.00 42.17 2.93
337 338 3.485394 TCTCCTGCACATAAAGCAAACA 58.515 40.909 0.00 0.00 42.17 2.83
338 339 3.888323 TCTCCTGCACATAAAGCAAACAA 59.112 39.130 0.00 0.00 42.17 2.83
339 340 4.022935 TCTCCTGCACATAAAGCAAACAAG 60.023 41.667 0.00 0.00 42.17 3.16
340 341 2.733026 CCTGCACATAAAGCAAACAAGC 59.267 45.455 0.00 0.00 42.17 4.01
341 342 2.733026 CTGCACATAAAGCAAACAAGCC 59.267 45.455 0.00 0.00 42.17 4.35
342 343 2.102084 TGCACATAAAGCAAACAAGCCA 59.898 40.909 0.00 0.00 39.39 4.75
343 344 3.129871 GCACATAAAGCAAACAAGCCAA 58.870 40.909 0.00 0.00 34.23 4.52
344 345 3.747529 GCACATAAAGCAAACAAGCCAAT 59.252 39.130 0.00 0.00 34.23 3.16
345 346 4.377635 GCACATAAAGCAAACAAGCCAATG 60.378 41.667 0.00 0.00 34.23 2.82
346 347 3.747529 ACATAAAGCAAACAAGCCAATGC 59.252 39.130 0.00 0.00 39.06 3.56
356 357 4.342427 GCCAATGCTGATGGGTGA 57.658 55.556 5.38 0.00 38.44 4.02
357 358 2.816746 GCCAATGCTGATGGGTGAT 58.183 52.632 5.38 0.00 38.44 3.06
358 359 0.387929 GCCAATGCTGATGGGTGATG 59.612 55.000 5.38 0.00 38.44 3.07
359 360 1.037493 CCAATGCTGATGGGTGATGG 58.963 55.000 0.00 0.00 34.15 3.51
360 361 0.387929 CAATGCTGATGGGTGATGGC 59.612 55.000 0.00 0.00 0.00 4.40
361 362 0.260816 AATGCTGATGGGTGATGGCT 59.739 50.000 0.00 0.00 0.00 4.75
362 363 1.142936 ATGCTGATGGGTGATGGCTA 58.857 50.000 0.00 0.00 0.00 3.93
375 376 3.248043 TGGCTATCCAACACTGTGC 57.752 52.632 7.90 0.00 39.99 4.57
397 398 5.105554 TGCTGCAGAAGAAAAACTTTACCAA 60.106 36.000 20.43 0.00 39.13 3.67
398 399 5.810074 GCTGCAGAAGAAAAACTTTACCAAA 59.190 36.000 20.43 0.00 39.13 3.28
399 400 6.312672 GCTGCAGAAGAAAAACTTTACCAAAA 59.687 34.615 20.43 0.00 39.13 2.44
400 401 7.148490 GCTGCAGAAGAAAAACTTTACCAAAAA 60.148 33.333 20.43 0.00 39.13 1.94
401 402 8.250538 TGCAGAAGAAAAACTTTACCAAAAAG 57.749 30.769 0.00 0.00 39.13 2.27
402 403 7.333174 TGCAGAAGAAAAACTTTACCAAAAAGG 59.667 33.333 2.86 0.00 40.45 3.11
403 404 7.547722 GCAGAAGAAAAACTTTACCAAAAAGGA 59.452 33.333 2.86 0.00 38.19 3.36
404 405 9.087424 CAGAAGAAAAACTTTACCAAAAAGGAG 57.913 33.333 2.86 0.00 38.19 3.69
405 406 8.258007 AGAAGAAAAACTTTACCAAAAAGGAGG 58.742 33.333 2.86 0.00 38.19 4.30
406 407 6.346096 AGAAAAACTTTACCAAAAAGGAGGC 58.654 36.000 2.86 0.00 41.22 4.70
407 408 4.316205 AAACTTTACCAAAAAGGAGGCG 57.684 40.909 2.86 0.00 41.22 5.52
408 409 2.940158 ACTTTACCAAAAAGGAGGCGT 58.060 42.857 2.86 0.00 41.22 5.68
409 410 3.293337 ACTTTACCAAAAAGGAGGCGTT 58.707 40.909 2.86 0.00 41.22 4.84
410 411 4.463070 ACTTTACCAAAAAGGAGGCGTTA 58.537 39.130 2.86 0.00 41.22 3.18
411 412 4.276678 ACTTTACCAAAAAGGAGGCGTTAC 59.723 41.667 2.86 0.00 41.22 2.50
412 413 2.351706 ACCAAAAAGGAGGCGTTACA 57.648 45.000 0.00 0.00 41.22 2.41
413 414 2.227194 ACCAAAAAGGAGGCGTTACAG 58.773 47.619 0.00 0.00 41.22 2.74
414 415 2.158726 ACCAAAAAGGAGGCGTTACAGA 60.159 45.455 0.00 0.00 41.22 3.41
415 416 2.882137 CCAAAAAGGAGGCGTTACAGAA 59.118 45.455 0.00 0.00 41.22 3.02
416 417 3.058224 CCAAAAAGGAGGCGTTACAGAAG 60.058 47.826 0.00 0.00 41.22 2.85
417 418 3.764237 AAAAGGAGGCGTTACAGAAGA 57.236 42.857 0.00 0.00 0.00 2.87
418 419 3.983044 AAAGGAGGCGTTACAGAAGAT 57.017 42.857 0.00 0.00 0.00 2.40
419 420 3.528597 AAGGAGGCGTTACAGAAGATC 57.471 47.619 0.00 0.00 0.00 2.75
420 421 2.457598 AGGAGGCGTTACAGAAGATCA 58.542 47.619 0.00 0.00 0.00 2.92
421 422 2.832129 AGGAGGCGTTACAGAAGATCAA 59.168 45.455 0.00 0.00 0.00 2.57
422 423 3.260884 AGGAGGCGTTACAGAAGATCAAA 59.739 43.478 0.00 0.00 0.00 2.69
423 424 3.619038 GGAGGCGTTACAGAAGATCAAAG 59.381 47.826 0.00 0.00 0.00 2.77
424 425 4.246458 GAGGCGTTACAGAAGATCAAAGT 58.754 43.478 0.00 0.00 0.00 2.66
425 426 3.997021 AGGCGTTACAGAAGATCAAAGTG 59.003 43.478 0.00 0.00 0.00 3.16
426 427 3.994392 GGCGTTACAGAAGATCAAAGTGA 59.006 43.478 0.00 0.00 0.00 3.41
427 428 4.631813 GGCGTTACAGAAGATCAAAGTGAT 59.368 41.667 0.00 0.00 40.34 3.06
428 429 5.810587 GGCGTTACAGAAGATCAAAGTGATA 59.189 40.000 0.00 0.00 37.20 2.15
429 430 6.480320 GGCGTTACAGAAGATCAAAGTGATAT 59.520 38.462 0.00 0.00 37.20 1.63
430 431 7.652105 GGCGTTACAGAAGATCAAAGTGATATA 59.348 37.037 0.00 0.00 37.20 0.86
431 432 8.695284 GCGTTACAGAAGATCAAAGTGATATAG 58.305 37.037 0.00 0.00 37.20 1.31
432 433 9.737427 CGTTACAGAAGATCAAAGTGATATAGT 57.263 33.333 0.00 0.00 37.20 2.12
436 437 8.904834 ACAGAAGATCAAAGTGATATAGTACGT 58.095 33.333 0.00 0.00 37.20 3.57
454 455 6.183347 AGTACGTACTTCCACTTACAGGTAT 58.817 40.000 22.45 0.00 31.13 2.73
469 709 5.514500 ACAGGTATGTGGATAGGTTGTTT 57.486 39.130 0.00 0.00 38.57 2.83
476 716 4.394729 TGTGGATAGGTTGTTTCAGGTTC 58.605 43.478 0.00 0.00 0.00 3.62
477 717 4.141367 TGTGGATAGGTTGTTTCAGGTTCA 60.141 41.667 0.00 0.00 0.00 3.18
478 718 4.825085 GTGGATAGGTTGTTTCAGGTTCAA 59.175 41.667 0.00 0.00 0.00 2.69
482 722 6.183360 GGATAGGTTGTTTCAGGTTCAACAAA 60.183 38.462 8.98 0.00 42.92 2.83
594 835 1.202746 GCTTCCCTATCCAAGGCAGAG 60.203 57.143 0.00 0.00 45.03 3.35
609 850 5.065704 AGGCAGAGCATATAACGTAGATG 57.934 43.478 0.00 0.00 0.00 2.90
614 855 6.625362 CAGAGCATATAACGTAGATGATGGT 58.375 40.000 8.09 4.81 29.09 3.55
615 856 7.093354 CAGAGCATATAACGTAGATGATGGTT 58.907 38.462 8.09 0.00 29.09 3.67
616 857 8.244113 CAGAGCATATAACGTAGATGATGGTTA 58.756 37.037 8.09 0.00 29.09 2.85
617 858 8.803235 AGAGCATATAACGTAGATGATGGTTAA 58.197 33.333 8.09 0.00 29.09 2.01
618 859 9.419297 GAGCATATAACGTAGATGATGGTTAAA 57.581 33.333 8.09 0.00 29.09 1.52
619 860 9.424319 AGCATATAACGTAGATGATGGTTAAAG 57.576 33.333 8.09 0.00 29.09 1.85
620 861 9.204570 GCATATAACGTAGATGATGGTTAAAGT 57.795 33.333 8.09 0.00 29.09 2.66
624 865 7.596749 AACGTAGATGATGGTTAAAGTCTTG 57.403 36.000 0.00 0.00 0.00 3.02
642 890 2.636647 TGAAGACAGACACCATGCAA 57.363 45.000 0.00 0.00 0.00 4.08
661 911 0.388659 AATTGCAAGCTTCCAACGCA 59.611 45.000 4.59 4.50 0.00 5.24
662 912 0.318955 ATTGCAAGCTTCCAACGCAC 60.319 50.000 4.59 0.00 31.10 5.34
729 993 2.156917 ACACATGACAACTCCATGCTG 58.843 47.619 0.00 0.00 43.76 4.41
753 1017 0.179062 AGCCAATCCATGCTCTCGAC 60.179 55.000 0.00 0.00 30.33 4.20
796 1060 3.056536 ACGCACTGTTGAGATGACACTAT 60.057 43.478 0.00 0.00 0.00 2.12
797 1061 3.305361 CGCACTGTTGAGATGACACTATG 59.695 47.826 0.00 0.00 0.00 2.23
823 1087 1.276421 ACAGTTGATTGTCCTCCCTCG 59.724 52.381 0.00 0.00 0.00 4.63
1044 1336 3.373439 GGATGACAAGCAGTTTAGCTCAG 59.627 47.826 0.00 0.00 45.89 3.35
1158 1465 3.829044 CGCACCATCGACCCCGTA 61.829 66.667 0.00 0.00 37.05 4.02
1161 1468 1.436336 CACCATCGACCCCGTAGTC 59.564 63.158 0.00 0.00 37.05 2.59
1234 1541 1.271543 CCAAGACCATGAAGAGGTGCA 60.272 52.381 0.00 0.00 40.09 4.57
1236 1543 1.059098 AGACCATGAAGAGGTGCACA 58.941 50.000 20.43 0.00 40.09 4.57
1346 1659 4.003788 CTTCCACCAGACCGCGGT 62.004 66.667 34.89 34.89 37.16 5.68
1366 1679 1.474879 TGTCGATGATCAACGGCTACA 59.525 47.619 26.80 19.29 35.13 2.74
1389 1702 4.424711 GGCGTGCCATCCTTGGGA 62.425 66.667 5.89 0.00 43.84 4.37
1407 1720 2.899339 GCTTCTGAGCCCGGCATC 60.899 66.667 13.15 7.03 43.29 3.91
1408 1721 2.587194 CTTCTGAGCCCGGCATCG 60.587 66.667 13.15 0.00 0.00 3.84
1437 1750 3.189287 ACCGTTGGAACTAGTGTACGTAG 59.811 47.826 0.00 1.44 0.00 3.51
1442 1755 2.357323 GGAACTAGTGTACGTAGGCCTC 59.643 54.545 9.68 0.00 0.00 4.70
1461 1774 3.060363 CCTCGTTAAAAGGTCGATTGACG 59.940 47.826 7.01 7.29 46.49 4.35
1484 1801 2.361610 CTGCACCGGCCCATTTCT 60.362 61.111 0.00 0.00 40.13 2.52
1500 1817 5.507315 CCCATTTCTGGTGTTGTTTGAGTAC 60.507 44.000 0.00 0.00 41.37 2.73
1581 1993 5.163301 TGTTTGTGCTGGGCCTTTAATTTTA 60.163 36.000 4.53 0.00 0.00 1.52
1707 2537 0.881118 TCGCCTTTTTCCTGCATGAC 59.119 50.000 0.00 0.00 0.00 3.06
1716 2546 4.350368 TTTCCTGCATGACTGTGTCTAA 57.650 40.909 0.00 0.00 33.15 2.10
1718 2548 4.558226 TCCTGCATGACTGTGTCTAATT 57.442 40.909 0.00 0.00 33.15 1.40
1758 2591 9.155975 GAAGTGGGTATAGCATAACAAGATATG 57.844 37.037 4.02 0.00 36.55 1.78
1792 2625 7.879070 AAGATAAACTTAAAAACCGGAAGGAC 58.121 34.615 9.46 0.00 45.92 3.85
1814 2648 4.141620 ACTGTGACAGGACAAAGTCAGAAT 60.142 41.667 17.92 0.00 44.62 2.40
1889 2723 1.405526 GCACTACCGAAGCCAAGATGA 60.406 52.381 0.00 0.00 0.00 2.92
1915 2749 2.157085 GGAGTTTAAGAAGCGTGAACGG 59.843 50.000 4.84 0.00 40.23 4.44
1954 2788 9.267084 GTTCAGATTTTGGTTTTTAAGCCATAA 57.733 29.630 0.00 1.88 39.13 1.90
2033 2871 6.579666 ATGAAGCAAGCTGTTATTCTTGAA 57.420 33.333 6.20 0.00 41.50 2.69
2035 2873 6.208644 TGAAGCAAGCTGTTATTCTTGAAAC 58.791 36.000 6.20 0.00 41.50 2.78
2097 2938 7.927048 TCAGATGTATGAAATTCAGAAGCATG 58.073 34.615 1.10 0.00 0.00 4.06
2118 2959 3.255395 TGTAATGGACACTGCATGTTTGG 59.745 43.478 0.00 0.00 43.56 3.28
2141 2982 6.326323 TGGTAGCATCTTGGTATTACAGATCA 59.674 38.462 0.00 0.00 32.57 2.92
2147 2988 8.715998 GCATCTTGGTATTACAGATCAAGTATG 58.284 37.037 0.00 10.95 36.94 2.39
2150 2991 8.432013 TCTTGGTATTACAGATCAAGTATGCAT 58.568 33.333 3.79 3.79 36.94 3.96
2171 3012 9.895138 ATGCATACATTAGCTATATGAACATGA 57.105 29.630 14.37 8.84 30.07 3.07
2201 3042 7.798801 CGTTCAACGCAATACCCAATTATATA 58.201 34.615 0.00 0.00 33.65 0.86
2233 3074 5.808540 CACCACAGGCAAAAGATTGATAATG 59.191 40.000 0.00 0.00 38.94 1.90
2253 3094 4.142609 TGAAGGCAGACCACATTATCTC 57.857 45.455 0.00 0.00 39.06 2.75
2265 3106 5.544176 ACCACATTATCTCGGTAATCCTGAT 59.456 40.000 0.00 0.00 0.00 2.90
2266 3107 6.043243 ACCACATTATCTCGGTAATCCTGATT 59.957 38.462 0.00 0.00 34.93 2.57
2284 3125 7.282585 TCCTGATTGATCCAACGAATAGAAAT 58.717 34.615 0.00 0.00 0.00 2.17
2285 3126 7.227314 TCCTGATTGATCCAACGAATAGAAATG 59.773 37.037 0.00 0.00 0.00 2.32
2413 3254 9.871299 GAAGACTTTTCACTAAATGAGTTCTTC 57.129 33.333 0.00 0.00 38.99 2.87
2414 3255 8.077836 AGACTTTTCACTAAATGAGTTCTTCG 57.922 34.615 0.00 0.00 38.99 3.79
2415 3256 6.659776 ACTTTTCACTAAATGAGTTCTTCGC 58.340 36.000 0.00 0.00 38.99 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.032799 TGTTTTGCTGTTGGATGTCGTC 59.967 45.455 0.00 0.00 0.00 4.20
1 2 2.020720 TGTTTTGCTGTTGGATGTCGT 58.979 42.857 0.00 0.00 0.00 4.34
2 3 2.772568 TGTTTTGCTGTTGGATGTCG 57.227 45.000 0.00 0.00 0.00 4.35
3 4 3.803778 CCTTTGTTTTGCTGTTGGATGTC 59.196 43.478 0.00 0.00 0.00 3.06
4 5 3.450457 TCCTTTGTTTTGCTGTTGGATGT 59.550 39.130 0.00 0.00 0.00 3.06
5 6 4.057406 TCCTTTGTTTTGCTGTTGGATG 57.943 40.909 0.00 0.00 0.00 3.51
6 7 4.696455 CTTCCTTTGTTTTGCTGTTGGAT 58.304 39.130 0.00 0.00 0.00 3.41
7 8 3.678529 GCTTCCTTTGTTTTGCTGTTGGA 60.679 43.478 0.00 0.00 0.00 3.53
8 9 2.609002 GCTTCCTTTGTTTTGCTGTTGG 59.391 45.455 0.00 0.00 0.00 3.77
9 10 3.524541 AGCTTCCTTTGTTTTGCTGTTG 58.475 40.909 0.00 0.00 0.00 3.33
10 11 3.893326 AGCTTCCTTTGTTTTGCTGTT 57.107 38.095 0.00 0.00 0.00 3.16
11 12 3.243068 CGTAGCTTCCTTTGTTTTGCTGT 60.243 43.478 0.00 0.00 32.72 4.40
12 13 3.300009 CGTAGCTTCCTTTGTTTTGCTG 58.700 45.455 0.00 0.00 32.72 4.41
13 14 2.293399 CCGTAGCTTCCTTTGTTTTGCT 59.707 45.455 0.00 0.00 34.92 3.91
14 15 2.607038 CCCGTAGCTTCCTTTGTTTTGC 60.607 50.000 0.00 0.00 0.00 3.68
15 16 2.030274 CCCCGTAGCTTCCTTTGTTTTG 60.030 50.000 0.00 0.00 0.00 2.44
16 17 2.235891 CCCCGTAGCTTCCTTTGTTTT 58.764 47.619 0.00 0.00 0.00 2.43
17 18 1.905637 CCCCGTAGCTTCCTTTGTTT 58.094 50.000 0.00 0.00 0.00 2.83
18 19 0.608308 GCCCCGTAGCTTCCTTTGTT 60.608 55.000 0.00 0.00 0.00 2.83
19 20 1.002502 GCCCCGTAGCTTCCTTTGT 60.003 57.895 0.00 0.00 0.00 2.83
20 21 0.608035 TTGCCCCGTAGCTTCCTTTG 60.608 55.000 0.00 0.00 0.00 2.77
21 22 0.331616 ATTGCCCCGTAGCTTCCTTT 59.668 50.000 0.00 0.00 0.00 3.11
22 23 0.331616 AATTGCCCCGTAGCTTCCTT 59.668 50.000 0.00 0.00 0.00 3.36
23 24 0.394352 CAATTGCCCCGTAGCTTCCT 60.394 55.000 0.00 0.00 0.00 3.36
24 25 2.004808 GCAATTGCCCCGTAGCTTCC 62.005 60.000 20.06 0.00 34.31 3.46
25 26 1.312371 TGCAATTGCCCCGTAGCTTC 61.312 55.000 26.94 0.00 41.18 3.86
26 27 1.304052 TGCAATTGCCCCGTAGCTT 60.304 52.632 26.94 0.00 41.18 3.74
27 28 2.046285 GTGCAATTGCCCCGTAGCT 61.046 57.895 26.94 0.00 41.18 3.32
28 29 1.666209 ATGTGCAATTGCCCCGTAGC 61.666 55.000 26.94 9.16 41.18 3.58
29 30 0.101040 CATGTGCAATTGCCCCGTAG 59.899 55.000 26.94 8.87 41.18 3.51
30 31 0.322906 TCATGTGCAATTGCCCCGTA 60.323 50.000 26.94 5.58 41.18 4.02
31 32 1.184322 TTCATGTGCAATTGCCCCGT 61.184 50.000 26.94 15.78 41.18 5.28
32 33 0.037512 TTTCATGTGCAATTGCCCCG 60.038 50.000 26.94 13.06 41.18 5.73
33 34 2.282407 GATTTCATGTGCAATTGCCCC 58.718 47.619 26.94 17.61 41.18 5.80
34 35 2.975266 TGATTTCATGTGCAATTGCCC 58.025 42.857 26.94 17.13 41.18 5.36
35 36 5.110598 TGTATGATTTCATGTGCAATTGCC 58.889 37.500 26.94 18.11 37.42 4.52
36 37 6.091034 TGTTGTATGATTTCATGTGCAATTGC 59.909 34.615 23.69 23.69 37.15 3.56
37 38 7.583860 TGTTGTATGATTTCATGTGCAATTG 57.416 32.000 0.00 0.00 37.15 2.32
38 39 9.524106 CTATGTTGTATGATTTCATGTGCAATT 57.476 29.630 3.30 2.55 37.15 2.32
39 40 8.139350 CCTATGTTGTATGATTTCATGTGCAAT 58.861 33.333 3.30 0.00 37.15 3.56
40 41 7.122501 ACCTATGTTGTATGATTTCATGTGCAA 59.877 33.333 3.30 3.85 37.15 4.08
41 42 6.602803 ACCTATGTTGTATGATTTCATGTGCA 59.397 34.615 3.30 0.00 37.15 4.57
42 43 7.012704 AGACCTATGTTGTATGATTTCATGTGC 59.987 37.037 3.30 0.00 37.15 4.57
43 44 8.340443 CAGACCTATGTTGTATGATTTCATGTG 58.660 37.037 3.30 0.00 37.15 3.21
44 45 8.267183 TCAGACCTATGTTGTATGATTTCATGT 58.733 33.333 3.30 0.00 37.15 3.21
45 46 8.667076 TCAGACCTATGTTGTATGATTTCATG 57.333 34.615 3.30 0.00 37.15 3.07
46 47 9.857656 ATTCAGACCTATGTTGTATGATTTCAT 57.142 29.630 0.00 0.00 34.28 2.57
47 48 9.685276 AATTCAGACCTATGTTGTATGATTTCA 57.315 29.630 0.00 0.00 34.28 2.69
50 51 9.685276 TCAAATTCAGACCTATGTTGTATGATT 57.315 29.630 0.00 0.00 34.28 2.57
51 52 9.334947 CTCAAATTCAGACCTATGTTGTATGAT 57.665 33.333 0.00 0.00 34.28 2.45
52 53 7.770433 CCTCAAATTCAGACCTATGTTGTATGA 59.230 37.037 0.00 0.00 32.53 2.15
53 54 7.467811 GCCTCAAATTCAGACCTATGTTGTATG 60.468 40.741 0.00 0.00 0.00 2.39
54 55 6.543831 GCCTCAAATTCAGACCTATGTTGTAT 59.456 38.462 0.00 0.00 0.00 2.29
55 56 5.880332 GCCTCAAATTCAGACCTATGTTGTA 59.120 40.000 0.00 0.00 0.00 2.41
56 57 4.702131 GCCTCAAATTCAGACCTATGTTGT 59.298 41.667 0.00 0.00 0.00 3.32
57 58 4.946157 AGCCTCAAATTCAGACCTATGTTG 59.054 41.667 0.00 0.00 0.00 3.33
58 59 5.184892 AGCCTCAAATTCAGACCTATGTT 57.815 39.130 0.00 0.00 0.00 2.71
59 60 4.851639 AGCCTCAAATTCAGACCTATGT 57.148 40.909 0.00 0.00 0.00 2.29
60 61 4.946157 ACAAGCCTCAAATTCAGACCTATG 59.054 41.667 0.00 0.00 0.00 2.23
61 62 5.184892 ACAAGCCTCAAATTCAGACCTAT 57.815 39.130 0.00 0.00 0.00 2.57
62 63 4.640771 ACAAGCCTCAAATTCAGACCTA 57.359 40.909 0.00 0.00 0.00 3.08
63 64 3.515602 ACAAGCCTCAAATTCAGACCT 57.484 42.857 0.00 0.00 0.00 3.85
64 65 5.904362 ATTACAAGCCTCAAATTCAGACC 57.096 39.130 0.00 0.00 0.00 3.85
65 66 9.331282 AGTATATTACAAGCCTCAAATTCAGAC 57.669 33.333 0.00 0.00 0.00 3.51
66 67 9.905713 AAGTATATTACAAGCCTCAAATTCAGA 57.094 29.630 0.00 0.00 0.00 3.27
68 69 9.679661 TGAAGTATATTACAAGCCTCAAATTCA 57.320 29.630 0.00 0.00 0.00 2.57
69 70 9.937175 GTGAAGTATATTACAAGCCTCAAATTC 57.063 33.333 0.00 0.00 0.00 2.17
70 71 8.612619 CGTGAAGTATATTACAAGCCTCAAATT 58.387 33.333 0.00 0.00 0.00 1.82
71 72 7.985184 TCGTGAAGTATATTACAAGCCTCAAAT 59.015 33.333 0.00 0.00 0.00 2.32
72 73 7.324935 TCGTGAAGTATATTACAAGCCTCAAA 58.675 34.615 0.00 0.00 0.00 2.69
73 74 6.869695 TCGTGAAGTATATTACAAGCCTCAA 58.130 36.000 0.00 0.00 0.00 3.02
74 75 6.459670 TCGTGAAGTATATTACAAGCCTCA 57.540 37.500 0.00 0.00 0.00 3.86
75 76 7.948278 ATTCGTGAAGTATATTACAAGCCTC 57.052 36.000 0.00 0.00 0.00 4.70
76 77 8.732746 AAATTCGTGAAGTATATTACAAGCCT 57.267 30.769 0.00 0.00 0.00 4.58
84 85 8.969267 CGAGCTTCTAAATTCGTGAAGTATATT 58.031 33.333 13.10 0.00 39.30 1.28
85 86 8.350722 TCGAGCTTCTAAATTCGTGAAGTATAT 58.649 33.333 13.10 0.00 39.30 0.86
86 87 7.700505 TCGAGCTTCTAAATTCGTGAAGTATA 58.299 34.615 13.10 0.00 39.30 1.47
87 88 6.561614 TCGAGCTTCTAAATTCGTGAAGTAT 58.438 36.000 13.10 6.07 39.30 2.12
88 89 5.946298 TCGAGCTTCTAAATTCGTGAAGTA 58.054 37.500 13.10 0.00 39.30 2.24
89 90 4.806330 TCGAGCTTCTAAATTCGTGAAGT 58.194 39.130 13.10 0.00 39.30 3.01
90 91 5.763444 TTCGAGCTTCTAAATTCGTGAAG 57.237 39.130 9.37 9.37 39.88 3.02
91 92 7.096599 CGATATTCGAGCTTCTAAATTCGTGAA 60.097 37.037 0.00 0.00 43.74 3.18
92 93 6.359883 CGATATTCGAGCTTCTAAATTCGTGA 59.640 38.462 0.00 0.00 43.74 4.35
93 94 6.359883 TCGATATTCGAGCTTCTAAATTCGTG 59.640 38.462 0.00 0.00 44.82 4.35
94 95 6.436261 TCGATATTCGAGCTTCTAAATTCGT 58.564 36.000 0.00 0.00 44.82 3.85
95 96 6.913121 TCGATATTCGAGCTTCTAAATTCG 57.087 37.500 0.00 0.00 44.82 3.34
109 110 3.448686 AGTTTGTGAGCCTCGATATTCG 58.551 45.455 0.00 0.00 42.10 3.34
110 111 4.985409 CCTAGTTTGTGAGCCTCGATATTC 59.015 45.833 0.00 0.00 0.00 1.75
111 112 4.649674 TCCTAGTTTGTGAGCCTCGATATT 59.350 41.667 0.00 0.00 0.00 1.28
112 113 4.215908 TCCTAGTTTGTGAGCCTCGATAT 58.784 43.478 0.00 0.00 0.00 1.63
113 114 3.628008 TCCTAGTTTGTGAGCCTCGATA 58.372 45.455 0.00 0.00 0.00 2.92
114 115 2.457598 TCCTAGTTTGTGAGCCTCGAT 58.542 47.619 0.00 0.00 0.00 3.59
115 116 1.919240 TCCTAGTTTGTGAGCCTCGA 58.081 50.000 0.00 0.00 0.00 4.04
116 117 2.743636 TTCCTAGTTTGTGAGCCTCG 57.256 50.000 0.00 0.00 0.00 4.63
117 118 2.744741 GCTTTCCTAGTTTGTGAGCCTC 59.255 50.000 0.00 0.00 0.00 4.70
118 119 2.106511 TGCTTTCCTAGTTTGTGAGCCT 59.893 45.455 0.00 0.00 0.00 4.58
119 120 2.226674 GTGCTTTCCTAGTTTGTGAGCC 59.773 50.000 0.00 0.00 0.00 4.70
120 121 2.096218 CGTGCTTTCCTAGTTTGTGAGC 60.096 50.000 0.00 0.00 0.00 4.26
121 122 2.096218 GCGTGCTTTCCTAGTTTGTGAG 60.096 50.000 0.00 0.00 0.00 3.51
122 123 1.871039 GCGTGCTTTCCTAGTTTGTGA 59.129 47.619 0.00 0.00 0.00 3.58
123 124 1.873591 AGCGTGCTTTCCTAGTTTGTG 59.126 47.619 0.00 0.00 0.00 3.33
124 125 2.256117 AGCGTGCTTTCCTAGTTTGT 57.744 45.000 0.00 0.00 0.00 2.83
125 126 3.626028 AAAGCGTGCTTTCCTAGTTTG 57.374 42.857 13.79 0.00 41.91 2.93
126 127 5.246307 AGATAAAGCGTGCTTTCCTAGTTT 58.754 37.500 21.97 0.00 44.17 2.66
127 128 4.833390 AGATAAAGCGTGCTTTCCTAGTT 58.167 39.130 21.97 0.72 44.17 2.24
128 129 4.160626 AGAGATAAAGCGTGCTTTCCTAGT 59.839 41.667 21.97 9.58 44.17 2.57
129 130 4.688021 AGAGATAAAGCGTGCTTTCCTAG 58.312 43.478 21.97 0.00 44.17 3.02
130 131 4.683832 GAGAGATAAAGCGTGCTTTCCTA 58.316 43.478 21.97 6.90 44.17 2.94
131 132 3.526534 GAGAGATAAAGCGTGCTTTCCT 58.473 45.455 21.97 18.95 44.17 3.36
132 133 2.282820 CGAGAGATAAAGCGTGCTTTCC 59.717 50.000 21.97 15.11 44.17 3.13
133 134 2.282820 CCGAGAGATAAAGCGTGCTTTC 59.717 50.000 21.97 10.25 44.17 2.62
134 135 2.271800 CCGAGAGATAAAGCGTGCTTT 58.728 47.619 21.99 21.99 46.56 3.51
135 136 1.471676 CCCGAGAGATAAAGCGTGCTT 60.472 52.381 0.24 0.24 37.98 3.91
136 137 0.103208 CCCGAGAGATAAAGCGTGCT 59.897 55.000 0.00 0.00 0.00 4.40
137 138 0.876342 CCCCGAGAGATAAAGCGTGC 60.876 60.000 0.00 0.00 0.00 5.34
138 139 0.460311 ACCCCGAGAGATAAAGCGTG 59.540 55.000 0.00 0.00 0.00 5.34
139 140 1.134788 CAACCCCGAGAGATAAAGCGT 60.135 52.381 0.00 0.00 0.00 5.07
140 141 1.571919 CAACCCCGAGAGATAAAGCG 58.428 55.000 0.00 0.00 0.00 4.68
141 142 1.209747 ACCAACCCCGAGAGATAAAGC 59.790 52.381 0.00 0.00 0.00 3.51
142 143 2.481449 CGACCAACCCCGAGAGATAAAG 60.481 54.545 0.00 0.00 0.00 1.85
143 144 1.479323 CGACCAACCCCGAGAGATAAA 59.521 52.381 0.00 0.00 0.00 1.40
144 145 1.108776 CGACCAACCCCGAGAGATAA 58.891 55.000 0.00 0.00 0.00 1.75
145 146 1.389609 GCGACCAACCCCGAGAGATA 61.390 60.000 0.00 0.00 0.00 1.98
146 147 2.722201 GCGACCAACCCCGAGAGAT 61.722 63.158 0.00 0.00 0.00 2.75
147 148 3.379445 GCGACCAACCCCGAGAGA 61.379 66.667 0.00 0.00 0.00 3.10
148 149 4.452733 GGCGACCAACCCCGAGAG 62.453 72.222 0.00 0.00 0.00 3.20
150 151 4.096003 ATGGCGACCAACCCCGAG 62.096 66.667 2.68 0.00 36.95 4.63
151 152 4.402528 CATGGCGACCAACCCCGA 62.403 66.667 2.68 0.00 36.95 5.14
152 153 4.715523 ACATGGCGACCAACCCCG 62.716 66.667 0.00 0.00 36.95 5.73
153 154 1.906333 AAACATGGCGACCAACCCC 60.906 57.895 0.00 0.00 36.95 4.95
154 155 1.288752 CAAACATGGCGACCAACCC 59.711 57.895 0.00 0.00 36.95 4.11
155 156 1.288752 CCAAACATGGCGACCAACC 59.711 57.895 0.00 0.00 36.95 3.77
156 157 0.387565 AACCAAACATGGCGACCAAC 59.612 50.000 0.00 0.00 36.95 3.77
157 158 1.883275 CTAACCAAACATGGCGACCAA 59.117 47.619 0.00 0.00 36.95 3.67
158 159 1.529226 CTAACCAAACATGGCGACCA 58.471 50.000 0.00 1.01 38.19 4.02
159 160 0.808755 CCTAACCAAACATGGCGACC 59.191 55.000 0.00 0.00 0.00 4.79
160 161 0.170339 GCCTAACCAAACATGGCGAC 59.830 55.000 0.00 0.00 33.96 5.19
161 162 0.963355 GGCCTAACCAAACATGGCGA 60.963 55.000 0.00 0.00 44.07 5.54
162 163 1.510844 GGCCTAACCAAACATGGCG 59.489 57.895 0.00 0.00 44.07 5.69
174 175 0.704076 AGATTGTTGGGCTGGCCTAA 59.296 50.000 21.72 10.80 34.10 2.69
175 176 0.704076 AAGATTGTTGGGCTGGCCTA 59.296 50.000 21.72 11.39 36.10 3.93
176 177 0.901580 CAAGATTGTTGGGCTGGCCT 60.902 55.000 21.72 0.00 36.10 5.19
177 178 0.899717 TCAAGATTGTTGGGCTGGCC 60.900 55.000 14.23 14.23 0.00 5.36
178 179 1.188863 ATCAAGATTGTTGGGCTGGC 58.811 50.000 0.00 0.00 0.00 4.85
179 180 3.674138 CGAAATCAAGATTGTTGGGCTGG 60.674 47.826 0.00 0.00 0.00 4.85
180 181 3.057315 ACGAAATCAAGATTGTTGGGCTG 60.057 43.478 0.00 0.00 0.00 4.85
181 182 3.157087 ACGAAATCAAGATTGTTGGGCT 58.843 40.909 0.00 0.00 0.00 5.19
182 183 3.501950 GACGAAATCAAGATTGTTGGGC 58.498 45.455 0.00 0.00 0.00 5.36
183 184 3.119495 GGGACGAAATCAAGATTGTTGGG 60.119 47.826 0.00 0.00 0.00 4.12
184 185 3.758554 AGGGACGAAATCAAGATTGTTGG 59.241 43.478 0.00 0.00 0.00 3.77
185 186 4.216257 ACAGGGACGAAATCAAGATTGTTG 59.784 41.667 0.00 0.00 0.00 3.33
186 187 4.398319 ACAGGGACGAAATCAAGATTGTT 58.602 39.130 0.00 0.00 0.00 2.83
187 188 4.021102 ACAGGGACGAAATCAAGATTGT 57.979 40.909 0.00 0.00 0.00 2.71
188 189 6.072728 TGTTTACAGGGACGAAATCAAGATTG 60.073 38.462 0.00 0.00 0.00 2.67
189 190 6.001460 TGTTTACAGGGACGAAATCAAGATT 58.999 36.000 0.00 0.00 0.00 2.40
190 191 5.556915 TGTTTACAGGGACGAAATCAAGAT 58.443 37.500 0.00 0.00 0.00 2.40
191 192 4.963373 TGTTTACAGGGACGAAATCAAGA 58.037 39.130 0.00 0.00 0.00 3.02
192 193 5.880054 ATGTTTACAGGGACGAAATCAAG 57.120 39.130 0.00 0.00 0.00 3.02
193 194 5.533154 ACAATGTTTACAGGGACGAAATCAA 59.467 36.000 0.00 0.00 0.00 2.57
194 195 5.049060 CACAATGTTTACAGGGACGAAATCA 60.049 40.000 0.00 0.00 0.00 2.57
195 196 5.180492 TCACAATGTTTACAGGGACGAAATC 59.820 40.000 0.00 0.00 0.00 2.17
196 197 5.048991 GTCACAATGTTTACAGGGACGAAAT 60.049 40.000 0.00 0.00 0.00 2.17
197 198 4.273969 GTCACAATGTTTACAGGGACGAAA 59.726 41.667 0.00 0.00 0.00 3.46
198 199 3.810941 GTCACAATGTTTACAGGGACGAA 59.189 43.478 0.00 0.00 0.00 3.85
199 200 3.395639 GTCACAATGTTTACAGGGACGA 58.604 45.455 0.00 0.00 0.00 4.20
200 201 2.156891 CGTCACAATGTTTACAGGGACG 59.843 50.000 11.00 11.00 40.45 4.79
201 202 3.395639 TCGTCACAATGTTTACAGGGAC 58.604 45.455 0.00 0.00 0.00 4.46
202 203 3.755112 TCGTCACAATGTTTACAGGGA 57.245 42.857 0.00 0.00 0.00 4.20
203 204 3.751175 ACATCGTCACAATGTTTACAGGG 59.249 43.478 0.00 0.00 33.62 4.45
204 205 6.474819 TTACATCGTCACAATGTTTACAGG 57.525 37.500 0.00 0.00 38.31 4.00
207 208 8.995906 GCTTTATTACATCGTCACAATGTTTAC 58.004 33.333 0.00 0.00 38.31 2.01
208 209 8.941977 AGCTTTATTACATCGTCACAATGTTTA 58.058 29.630 0.00 0.00 38.31 2.01
209 210 7.816640 AGCTTTATTACATCGTCACAATGTTT 58.183 30.769 0.00 0.00 38.31 2.83
210 211 7.377766 AGCTTTATTACATCGTCACAATGTT 57.622 32.000 0.00 0.00 38.31 2.71
211 212 6.985188 AGCTTTATTACATCGTCACAATGT 57.015 33.333 0.00 0.00 40.37 2.71
212 213 7.253420 GCAAAGCTTTATTACATCGTCACAATG 60.253 37.037 12.25 0.00 0.00 2.82
213 214 6.747280 GCAAAGCTTTATTACATCGTCACAAT 59.253 34.615 12.25 0.00 0.00 2.71
214 215 6.083630 GCAAAGCTTTATTACATCGTCACAA 58.916 36.000 12.25 0.00 0.00 3.33
215 216 5.180304 TGCAAAGCTTTATTACATCGTCACA 59.820 36.000 12.25 0.00 0.00 3.58
216 217 5.627172 TGCAAAGCTTTATTACATCGTCAC 58.373 37.500 12.25 0.00 0.00 3.67
217 218 5.411361 ACTGCAAAGCTTTATTACATCGTCA 59.589 36.000 12.25 0.00 0.00 4.35
218 219 5.869350 ACTGCAAAGCTTTATTACATCGTC 58.131 37.500 12.25 0.00 0.00 4.20
219 220 5.880054 ACTGCAAAGCTTTATTACATCGT 57.120 34.783 12.25 1.38 0.00 3.73
220 221 6.582295 ACAAACTGCAAAGCTTTATTACATCG 59.418 34.615 12.25 0.00 0.00 3.84
221 222 7.809806 AGACAAACTGCAAAGCTTTATTACATC 59.190 33.333 12.25 3.72 0.00 3.06
222 223 7.661040 AGACAAACTGCAAAGCTTTATTACAT 58.339 30.769 12.25 0.00 0.00 2.29
223 224 7.038154 AGACAAACTGCAAAGCTTTATTACA 57.962 32.000 12.25 7.23 0.00 2.41
224 225 9.458374 TTTAGACAAACTGCAAAGCTTTATTAC 57.542 29.630 12.25 2.69 0.00 1.89
226 227 8.940768 TTTTAGACAAACTGCAAAGCTTTATT 57.059 26.923 12.25 1.51 0.00 1.40
227 228 8.940768 TTTTTAGACAAACTGCAAAGCTTTAT 57.059 26.923 12.25 0.00 0.00 1.40
250 251 2.093921 CCCCCGGCGATAATTTGTTTTT 60.094 45.455 9.30 0.00 0.00 1.94
251 252 1.478916 CCCCCGGCGATAATTTGTTTT 59.521 47.619 9.30 0.00 0.00 2.43
252 253 1.107945 CCCCCGGCGATAATTTGTTT 58.892 50.000 9.30 0.00 0.00 2.83
253 254 0.256464 TCCCCCGGCGATAATTTGTT 59.744 50.000 9.30 0.00 0.00 2.83
267 268 2.576648 AGAGTAGTTTGTTCCATCCCCC 59.423 50.000 0.00 0.00 0.00 5.40
270 271 5.181433 GTGGAAAGAGTAGTTTGTTCCATCC 59.819 44.000 6.70 0.00 46.91 3.51
312 313 1.952296 GCTTTATGTGCAGGAGATGGG 59.048 52.381 0.00 0.00 0.00 4.00
339 340 0.387929 CATCACCCATCAGCATTGGC 59.612 55.000 0.00 0.00 41.61 4.52
340 341 1.037493 CCATCACCCATCAGCATTGG 58.963 55.000 0.00 0.00 0.00 3.16
341 342 0.387929 GCCATCACCCATCAGCATTG 59.612 55.000 0.00 0.00 0.00 2.82
342 343 0.260816 AGCCATCACCCATCAGCATT 59.739 50.000 0.00 0.00 0.00 3.56
343 344 1.142936 TAGCCATCACCCATCAGCAT 58.857 50.000 0.00 0.00 0.00 3.79
344 345 1.072806 GATAGCCATCACCCATCAGCA 59.927 52.381 0.00 0.00 0.00 4.41
345 346 1.612726 GGATAGCCATCACCCATCAGC 60.613 57.143 0.00 0.00 32.32 4.26
346 347 1.701292 TGGATAGCCATCACCCATCAG 59.299 52.381 0.00 0.00 39.92 2.90
347 348 1.818419 TGGATAGCCATCACCCATCA 58.182 50.000 0.00 0.00 39.92 3.07
348 349 2.158623 TGTTGGATAGCCATCACCCATC 60.159 50.000 6.68 0.00 45.46 3.51
349 350 1.852309 TGTTGGATAGCCATCACCCAT 59.148 47.619 6.68 0.00 45.46 4.00
350 351 1.294041 TGTTGGATAGCCATCACCCA 58.706 50.000 6.68 0.00 45.46 4.51
354 355 2.940971 GCACAGTGTTGGATAGCCATCA 60.941 50.000 6.68 6.68 45.46 3.07
355 356 1.672881 GCACAGTGTTGGATAGCCATC 59.327 52.381 0.00 0.00 45.46 3.51
356 357 1.283029 AGCACAGTGTTGGATAGCCAT 59.717 47.619 0.00 0.00 45.46 4.40
357 358 0.692476 AGCACAGTGTTGGATAGCCA 59.308 50.000 0.00 0.00 44.17 4.75
358 359 1.089920 CAGCACAGTGTTGGATAGCC 58.910 55.000 9.49 0.00 0.00 3.93
359 360 0.449388 GCAGCACAGTGTTGGATAGC 59.551 55.000 18.11 0.47 0.00 2.97
360 361 1.736126 CTGCAGCACAGTGTTGGATAG 59.264 52.381 18.11 2.03 41.86 2.08
361 362 1.812235 CTGCAGCACAGTGTTGGATA 58.188 50.000 18.11 0.00 41.86 2.59
362 363 2.637521 CTGCAGCACAGTGTTGGAT 58.362 52.632 18.11 0.00 41.86 3.41
375 376 7.826260 TTTTGGTAAAGTTTTTCTTCTGCAG 57.174 32.000 7.63 7.63 35.02 4.41
380 381 7.011109 GCCTCCTTTTTGGTAAAGTTTTTCTTC 59.989 37.037 0.00 0.00 34.56 2.87
385 386 4.160814 ACGCCTCCTTTTTGGTAAAGTTTT 59.839 37.500 0.00 0.00 37.07 2.43
397 398 3.764237 TCTTCTGTAACGCCTCCTTTT 57.236 42.857 0.00 0.00 0.00 2.27
398 399 3.260884 TGATCTTCTGTAACGCCTCCTTT 59.739 43.478 0.00 0.00 0.00 3.11
399 400 2.832129 TGATCTTCTGTAACGCCTCCTT 59.168 45.455 0.00 0.00 0.00 3.36
400 401 2.457598 TGATCTTCTGTAACGCCTCCT 58.542 47.619 0.00 0.00 0.00 3.69
401 402 2.961526 TGATCTTCTGTAACGCCTCC 57.038 50.000 0.00 0.00 0.00 4.30
402 403 4.092091 CACTTTGATCTTCTGTAACGCCTC 59.908 45.833 0.00 0.00 0.00 4.70
403 404 3.997021 CACTTTGATCTTCTGTAACGCCT 59.003 43.478 0.00 0.00 0.00 5.52
404 405 3.994392 TCACTTTGATCTTCTGTAACGCC 59.006 43.478 0.00 0.00 0.00 5.68
405 406 5.786401 ATCACTTTGATCTTCTGTAACGC 57.214 39.130 0.00 0.00 29.59 4.84
406 407 9.737427 ACTATATCACTTTGATCTTCTGTAACG 57.263 33.333 0.00 0.00 38.26 3.18
410 411 8.904834 ACGTACTATATCACTTTGATCTTCTGT 58.095 33.333 0.00 0.00 38.26 3.41
416 417 9.609950 GGAAGTACGTACTATATCACTTTGATC 57.390 37.037 27.59 15.80 35.48 2.92
417 418 9.128404 TGGAAGTACGTACTATATCACTTTGAT 57.872 33.333 27.59 7.99 36.89 2.57
418 419 8.400947 GTGGAAGTACGTACTATATCACTTTGA 58.599 37.037 27.59 0.78 34.99 2.69
419 420 8.404000 AGTGGAAGTACGTACTATATCACTTTG 58.596 37.037 27.59 0.00 34.99 2.77
420 421 8.517062 AGTGGAAGTACGTACTATATCACTTT 57.483 34.615 27.59 9.48 34.99 2.66
421 422 8.517062 AAGTGGAAGTACGTACTATATCACTT 57.483 34.615 32.10 32.10 37.36 3.16
422 423 9.050601 GTAAGTGGAAGTACGTACTATATCACT 57.949 37.037 27.59 27.86 35.65 3.41
423 424 8.830580 TGTAAGTGGAAGTACGTACTATATCAC 58.169 37.037 27.59 26.50 36.76 3.06
424 425 8.962884 TGTAAGTGGAAGTACGTACTATATCA 57.037 34.615 27.59 18.86 36.76 2.15
425 426 8.502387 CCTGTAAGTGGAAGTACGTACTATATC 58.498 40.741 27.59 20.47 36.76 1.63
426 427 7.995488 ACCTGTAAGTGGAAGTACGTACTATAT 59.005 37.037 27.59 13.27 36.76 0.86
427 428 7.338710 ACCTGTAAGTGGAAGTACGTACTATA 58.661 38.462 27.59 14.32 36.76 1.31
428 429 6.183347 ACCTGTAAGTGGAAGTACGTACTAT 58.817 40.000 27.59 17.42 36.76 2.12
429 430 5.560724 ACCTGTAAGTGGAAGTACGTACTA 58.439 41.667 27.59 10.58 36.76 1.82
430 431 4.401925 ACCTGTAAGTGGAAGTACGTACT 58.598 43.478 22.45 22.45 36.76 2.73
431 432 4.773323 ACCTGTAAGTGGAAGTACGTAC 57.227 45.455 18.10 18.10 36.49 3.67
432 433 5.945784 ACATACCTGTAAGTGGAAGTACGTA 59.054 40.000 0.00 0.00 32.49 3.57
433 434 4.768968 ACATACCTGTAAGTGGAAGTACGT 59.231 41.667 0.00 0.00 32.49 3.57
434 435 5.100259 CACATACCTGTAAGTGGAAGTACG 58.900 45.833 5.08 0.00 32.82 3.67
454 455 4.141367 TGAACCTGAAACAACCTATCCACA 60.141 41.667 0.00 0.00 0.00 4.17
463 703 5.004345 CACGATTTGTTGAACCTGAAACAAC 59.996 40.000 0.00 0.00 43.86 3.32
469 709 3.275143 ACACACGATTTGTTGAACCTGA 58.725 40.909 0.00 0.00 35.67 3.86
476 716 3.551439 GTGCAAACACACGATTTGTTG 57.449 42.857 0.00 0.00 46.61 3.33
569 810 1.123928 CTTGGATAGGGAAGCCGTCT 58.876 55.000 0.00 0.00 0.00 4.18
594 835 9.204570 ACTTTAACCATCATCTACGTTATATGC 57.795 33.333 0.00 0.00 0.00 3.14
609 850 6.706270 TGTCTGTCTTCAAGACTTTAACCATC 59.294 38.462 18.49 0.80 45.27 3.51
614 855 5.984725 TGGTGTCTGTCTTCAAGACTTTAA 58.015 37.500 18.49 0.00 45.27 1.52
615 856 5.607939 TGGTGTCTGTCTTCAAGACTTTA 57.392 39.130 18.49 1.35 45.27 1.85
616 857 4.487714 TGGTGTCTGTCTTCAAGACTTT 57.512 40.909 18.49 0.00 45.27 2.66
617 858 4.384056 CATGGTGTCTGTCTTCAAGACTT 58.616 43.478 18.49 0.00 45.27 3.01
618 859 3.805108 GCATGGTGTCTGTCTTCAAGACT 60.805 47.826 18.49 0.00 45.27 3.24
619 860 2.481952 GCATGGTGTCTGTCTTCAAGAC 59.518 50.000 10.92 10.92 45.26 3.01
620 861 2.104622 TGCATGGTGTCTGTCTTCAAGA 59.895 45.455 0.00 0.00 0.00 3.02
621 862 2.497138 TGCATGGTGTCTGTCTTCAAG 58.503 47.619 0.00 0.00 0.00 3.02
624 865 4.232221 CAATTTGCATGGTGTCTGTCTTC 58.768 43.478 0.00 0.00 0.00 2.87
642 890 0.388659 TGCGTTGGAAGCTTGCAATT 59.611 45.000 32.02 0.00 40.59 2.32
656 906 1.202770 AGCTAAAGGTGAAGGTGCGTT 60.203 47.619 0.00 0.00 0.00 4.84
657 907 0.396811 AGCTAAAGGTGAAGGTGCGT 59.603 50.000 0.00 0.00 0.00 5.24
661 911 3.876309 TGGAAAGCTAAAGGTGAAGGT 57.124 42.857 0.00 0.00 0.00 3.50
662 912 5.243730 TGAAATGGAAAGCTAAAGGTGAAGG 59.756 40.000 0.00 0.00 0.00 3.46
702 966 4.578871 TGGAGTTGTCATGTGTCATTAGG 58.421 43.478 0.00 0.00 0.00 2.69
753 1017 9.039500 GTGCGTTGCAATAAAAATATTCTTTTG 57.961 29.630 0.59 0.00 41.47 2.44
796 1060 5.279809 GGGAGGACAATCAACTGTAGTTACA 60.280 44.000 0.00 0.00 36.32 2.41
797 1061 5.046520 AGGGAGGACAATCAACTGTAGTTAC 60.047 44.000 0.00 0.00 36.32 2.50
823 1087 0.600255 ACTGCTACGTGTGTTCTGGC 60.600 55.000 0.00 0.00 0.00 4.85
871 1138 0.179108 ATAGTCCGTCCGCTTCTTGC 60.179 55.000 0.00 0.00 38.57 4.01
872 1139 3.644884 ATATAGTCCGTCCGCTTCTTG 57.355 47.619 0.00 0.00 0.00 3.02
879 1146 3.116300 GCATGCATATATAGTCCGTCCG 58.884 50.000 14.21 0.00 0.00 4.79
880 1147 3.865745 GTGCATGCATATATAGTCCGTCC 59.134 47.826 25.64 1.11 0.00 4.79
1044 1336 2.203365 TCGGCTCGAGAGGATCCC 60.203 66.667 18.75 5.45 33.66 3.85
1234 1541 3.498774 AGATGACTTCCTTGTGCTTGT 57.501 42.857 0.00 0.00 0.00 3.16
1287 1597 2.511600 CGGCGGGTCCTGATGTTC 60.512 66.667 0.31 0.00 0.00 3.18
1309 1622 2.818274 GGGTGTCGCGATTGGACC 60.818 66.667 14.06 15.85 33.46 4.46
1346 1659 1.474879 TGTAGCCGTTGATCATCGACA 59.525 47.619 24.19 17.86 30.06 4.35
1408 1721 0.035820 TAGTTCCAACGGTCCATGCC 60.036 55.000 0.00 0.00 0.00 4.40
1409 1722 1.338769 ACTAGTTCCAACGGTCCATGC 60.339 52.381 0.00 0.00 0.00 4.06
1410 1723 2.289444 ACACTAGTTCCAACGGTCCATG 60.289 50.000 0.00 0.00 0.00 3.66
1411 1724 1.975680 ACACTAGTTCCAACGGTCCAT 59.024 47.619 0.00 0.00 0.00 3.41
1412 1725 1.416243 ACACTAGTTCCAACGGTCCA 58.584 50.000 0.00 0.00 0.00 4.02
1437 1750 2.019948 ATCGACCTTTTAACGAGGCC 57.980 50.000 0.00 0.00 39.31 5.19
1442 1755 2.093152 CCCGTCAATCGACCTTTTAACG 59.907 50.000 0.00 0.00 42.86 3.18
1479 1796 5.885912 ACTGTACTCAAACAACACCAGAAAT 59.114 36.000 0.00 0.00 0.00 2.17
1484 1801 5.968528 AAAACTGTACTCAAACAACACCA 57.031 34.783 0.00 0.00 0.00 4.17
1551 1963 1.735360 CCCAGCACAAACACCACAG 59.265 57.895 0.00 0.00 0.00 3.66
1707 2537 3.393800 CCCGGAGCATAATTAGACACAG 58.606 50.000 0.73 0.00 0.00 3.66
1716 2546 2.127708 ACTTCTTCCCCGGAGCATAAT 58.872 47.619 0.73 0.00 0.00 1.28
1718 2548 0.830648 CACTTCTTCCCCGGAGCATA 59.169 55.000 0.73 0.00 0.00 3.14
1775 2608 4.024302 GTCACAGTCCTTCCGGTTTTTAAG 60.024 45.833 0.00 0.00 0.00 1.85
1792 2625 3.459232 TCTGACTTTGTCCTGTCACAG 57.541 47.619 0.00 0.00 38.15 3.66
1794 2627 4.380531 TCATTCTGACTTTGTCCTGTCAC 58.619 43.478 0.00 0.00 38.15 3.67
1814 2648 4.646945 CAGTAGCTTTCTCTACCATCCTCA 59.353 45.833 0.00 0.00 39.71 3.86
1889 2723 6.206498 GTTCACGCTTCTTAAACTCCAAAAT 58.794 36.000 0.00 0.00 0.00 1.82
1915 2749 6.587608 CCAAAATCTGAACCAAATAGCAGTTC 59.412 38.462 0.00 0.00 40.23 3.01
1954 2788 1.404035 GCCAAAACCAGACGTGTCTTT 59.596 47.619 0.00 0.00 37.98 2.52
1987 2822 0.736636 GCTGCATGCTGCTGATTACA 59.263 50.000 34.29 4.66 45.31 2.41
1988 2823 3.546407 GCTGCATGCTGCTGATTAC 57.454 52.632 34.29 10.63 45.31 1.89
2011 2848 6.039717 AGTTTCAAGAATAACAGCTTGCTTCA 59.960 34.615 0.00 0.00 40.89 3.02
2015 2852 4.383948 GCAGTTTCAAGAATAACAGCTTGC 59.616 41.667 0.00 0.00 40.89 4.01
2065 2903 7.226128 TCTGAATTTCATACATCTGATCTGCAC 59.774 37.037 0.00 0.00 0.00 4.57
2097 2938 3.255642 ACCAAACATGCAGTGTCCATTAC 59.744 43.478 0.00 0.00 41.14 1.89
2118 2959 7.928706 ACTTGATCTGTAATACCAAGATGCTAC 59.071 37.037 12.01 0.00 38.02 3.58
2201 3042 2.356665 TTGCCTGTGGTGTTGTATGT 57.643 45.000 0.00 0.00 0.00 2.29
2233 3074 3.126831 CGAGATAATGTGGTCTGCCTTC 58.873 50.000 0.00 0.00 35.27 3.46
2251 3092 4.607293 TGGATCAATCAGGATTACCGAG 57.393 45.455 0.00 0.00 41.83 4.63
2253 3094 3.494626 CGTTGGATCAATCAGGATTACCG 59.505 47.826 0.00 0.00 41.83 4.02
2265 3106 7.880160 AATCCATTTCTATTCGTTGGATCAA 57.120 32.000 3.42 0.00 44.41 2.57
2266 3107 7.880160 AAATCCATTTCTATTCGTTGGATCA 57.120 32.000 3.42 0.00 44.41 2.92
2375 3216 7.060421 AGTGAAAAGTCTTCTATGTTTTGGGA 58.940 34.615 0.00 0.00 0.00 4.37
2403 3244 1.827969 ACAGCCTAGCGAAGAACTCAT 59.172 47.619 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.