Multiple sequence alignment - TraesCS1D01G068700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G068700 chr1D 100.000 5738 0 0 1 5738 50007490 50013227 0.000000e+00 10597.0
1 TraesCS1D01G068700 chr1D 94.527 2010 47 22 3548 5537 50025908 50027874 0.000000e+00 3044.0
2 TraesCS1D01G068700 chr1D 88.527 2362 220 20 533 2851 50023267 50025620 0.000000e+00 2813.0
3 TraesCS1D01G068700 chr1D 89.871 1777 175 3 533 2305 50109261 50111036 0.000000e+00 2279.0
4 TraesCS1D01G068700 chr1D 89.243 1757 183 5 546 2299 49973920 49975673 0.000000e+00 2193.0
5 TraesCS1D01G068700 chr1D 86.876 1783 228 6 528 2307 49956941 49958720 0.000000e+00 1991.0
6 TraesCS1D01G068700 chr1D 93.934 544 32 1 3 546 50108637 50109179 0.000000e+00 821.0
7 TraesCS1D01G068700 chr1D 96.328 463 8 1 3093 3546 467110274 467109812 0.000000e+00 752.0
8 TraesCS1D01G068700 chr1D 85.900 539 66 7 13 546 50059273 50059806 3.000000e-157 566.0
9 TraesCS1D01G068700 chr1D 85.404 507 70 4 31 535 49956333 49956837 1.830000e-144 523.0
10 TraesCS1D01G068700 chr1D 83.364 535 81 7 15 546 49426294 49425765 6.680000e-134 488.0
11 TraesCS1D01G068700 chr1D 82.246 552 84 9 5 546 49617060 49617607 1.130000e-126 464.0
12 TraesCS1D01G068700 chr1D 93.810 210 11 2 2884 3093 50025699 50025906 1.200000e-81 315.0
13 TraesCS1D01G068700 chr1A 94.345 1963 74 9 1145 3093 49302448 49304387 0.000000e+00 2976.0
14 TraesCS1D01G068700 chr1A 89.509 1773 181 3 531 2299 49355468 49357239 0.000000e+00 2239.0
15 TraesCS1D01G068700 chr1A 88.721 1782 192 6 530 2305 49347433 49349211 0.000000e+00 2169.0
16 TraesCS1D01G068700 chr1A 86.917 1781 231 2 528 2307 49294062 49295841 0.000000e+00 1997.0
17 TraesCS1D01G068700 chr1A 91.636 538 43 2 9 546 49354834 49355369 0.000000e+00 743.0
18 TraesCS1D01G068700 chr1A 81.716 536 92 5 14 546 48999668 48999136 5.280000e-120 442.0
19 TraesCS1D01G068700 chr1A 84.471 425 22 10 3548 3957 49304389 49304784 4.200000e-101 379.0
20 TraesCS1D01G068700 chr1A 95.146 206 9 1 5534 5738 566605821 566605616 1.990000e-84 324.0
21 TraesCS1D01G068700 chr1B 89.643 1680 159 9 626 2298 70694934 70696605 0.000000e+00 2124.0
22 TraesCS1D01G068700 chr1B 93.028 545 38 0 2 546 70689951 70690495 0.000000e+00 797.0
23 TraesCS1D01G068700 chr1B 85.098 510 69 6 31 535 70333849 70334356 1.100000e-141 514.0
24 TraesCS1D01G068700 chr5D 95.238 462 13 1 3096 3548 550248557 550249018 0.000000e+00 723.0
25 TraesCS1D01G068700 chr5D 96.774 31 1 0 3519 3549 439258194 439258164 1.000000e-02 52.8
26 TraesCS1D01G068700 chr7B 94.218 467 18 4 3096 3553 567184743 567185209 0.000000e+00 704.0
27 TraesCS1D01G068700 chr7B 92.079 202 9 3 5537 5738 115542320 115542514 1.570000e-70 278.0
28 TraesCS1D01G068700 chr2B 94.481 453 15 2 3096 3539 494365450 494365901 0.000000e+00 689.0
29 TraesCS1D01G068700 chr2B 86.364 462 54 1 3094 3546 684812103 684812564 3.990000e-136 496.0
30 TraesCS1D01G068700 chr2B 84.746 472 63 3 3089 3551 682746304 682746775 1.130000e-126 464.0
31 TraesCS1D01G068700 chr7A 92.083 480 24 6 3079 3549 294696416 294695942 0.000000e+00 664.0
32 TraesCS1D01G068700 chr7A 93.204 206 13 1 5534 5738 486872477 486872272 9.340000e-78 302.0
33 TraesCS1D01G068700 chr5A 86.052 466 55 2 3094 3550 672513990 672513526 5.170000e-135 492.0
34 TraesCS1D01G068700 chr5A 95.610 205 9 0 5534 5738 653384850 653384646 4.290000e-86 329.0
35 TraesCS1D01G068700 chr2D 84.894 470 59 4 3092 3551 459912817 459913284 1.130000e-126 464.0
36 TraesCS1D01G068700 chr2D 93.171 205 14 0 5534 5738 381238377 381238173 9.340000e-78 302.0
37 TraesCS1D01G068700 chr7D 95.610 205 9 0 5534 5738 388132373 388132169 4.290000e-86 329.0
38 TraesCS1D01G068700 chr7D 94.608 204 11 0 5535 5738 64260395 64260192 3.340000e-82 316.0
39 TraesCS1D01G068700 chr7D 87.209 258 33 0 3096 3353 91554649 91554392 1.560000e-75 294.0
40 TraesCS1D01G068700 chr7D 86.567 201 27 0 3351 3551 91553758 91553558 7.480000e-54 222.0
41 TraesCS1D01G068700 chr3A 90.909 209 15 3 5534 5738 565791334 565791126 1.570000e-70 278.0
42 TraesCS1D01G068700 chr3D 88.725 204 20 2 5534 5734 575560307 575560104 4.440000e-61 246.0
43 TraesCS1D01G068700 chr4A 96.970 33 1 0 3519 3551 22925683 22925651 8.030000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G068700 chr1D 50007490 50013227 5737 False 10597.000000 10597 100.0000 1 5738 1 chr1D.!!$F3 5737
1 TraesCS1D01G068700 chr1D 49973920 49975673 1753 False 2193.000000 2193 89.2430 546 2299 1 chr1D.!!$F2 1753
2 TraesCS1D01G068700 chr1D 50023267 50027874 4607 False 2057.333333 3044 92.2880 533 5537 3 chr1D.!!$F6 5004
3 TraesCS1D01G068700 chr1D 50108637 50111036 2399 False 1550.000000 2279 91.9025 3 2305 2 chr1D.!!$F7 2302
4 TraesCS1D01G068700 chr1D 49956333 49958720 2387 False 1257.000000 1991 86.1400 31 2307 2 chr1D.!!$F5 2276
5 TraesCS1D01G068700 chr1D 50059273 50059806 533 False 566.000000 566 85.9000 13 546 1 chr1D.!!$F4 533
6 TraesCS1D01G068700 chr1D 49425765 49426294 529 True 488.000000 488 83.3640 15 546 1 chr1D.!!$R1 531
7 TraesCS1D01G068700 chr1D 49617060 49617607 547 False 464.000000 464 82.2460 5 546 1 chr1D.!!$F1 541
8 TraesCS1D01G068700 chr1A 49347433 49349211 1778 False 2169.000000 2169 88.7210 530 2305 1 chr1A.!!$F2 1775
9 TraesCS1D01G068700 chr1A 49294062 49295841 1779 False 1997.000000 1997 86.9170 528 2307 1 chr1A.!!$F1 1779
10 TraesCS1D01G068700 chr1A 49302448 49304784 2336 False 1677.500000 2976 89.4080 1145 3957 2 chr1A.!!$F3 2812
11 TraesCS1D01G068700 chr1A 49354834 49357239 2405 False 1491.000000 2239 90.5725 9 2299 2 chr1A.!!$F4 2290
12 TraesCS1D01G068700 chr1A 48999136 48999668 532 True 442.000000 442 81.7160 14 546 1 chr1A.!!$R1 532
13 TraesCS1D01G068700 chr1B 70694934 70696605 1671 False 2124.000000 2124 89.6430 626 2298 1 chr1B.!!$F3 1672
14 TraesCS1D01G068700 chr1B 70689951 70690495 544 False 797.000000 797 93.0280 2 546 1 chr1B.!!$F2 544
15 TraesCS1D01G068700 chr1B 70333849 70334356 507 False 514.000000 514 85.0980 31 535 1 chr1B.!!$F1 504
16 TraesCS1D01G068700 chr7D 91553558 91554649 1091 True 258.000000 294 86.8880 3096 3551 2 chr7D.!!$R3 455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
395 405 0.251121 TTCTTTGGGCGCATCCTCAA 60.251 50.0 10.83 2.41 34.39 3.02 F
449 460 0.251653 ACCGTCCTCAAGTGCCTCTA 60.252 55.0 0.00 0.00 0.00 2.43 F
2160 2407 0.644937 AGGGGGAGATAGTCAAGGCT 59.355 55.0 0.00 0.00 0.00 4.58 F
3380 4369 0.177373 CCTTACCTCACTAACGGGCC 59.823 60.0 0.00 0.00 0.00 5.80 F
3391 4380 0.611714 TAACGGGCCAACTTCTCTCC 59.388 55.0 4.39 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 2387 0.761802 GCCTTGACTATCTCCCCCTG 59.238 60.000 0.00 0.00 0.00 4.45 R
2348 2595 2.499289 CTCAACTGTACCCTCTGAGCAT 59.501 50.000 0.00 0.00 0.00 3.79 R
3508 4497 0.179153 GCCCAGCTTCGCAAAATCTC 60.179 55.000 0.00 0.00 0.00 2.75 R
4570 5577 1.131883 GAAAAGAGACGGGTCGATCGA 59.868 52.381 15.15 15.15 34.09 3.59 R
4955 5963 2.291217 GGGTCCTGGCTTTTGAGAATCT 60.291 50.000 0.00 0.00 34.92 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 107 2.265904 ACAGAGCGTGTACGAGCCA 61.266 57.895 8.82 0.00 43.02 4.75
195 202 1.640149 TCCCTTGATGGATTCCTTGCA 59.360 47.619 3.95 0.00 38.35 4.08
198 205 2.097036 CTTGATGGATTCCTTGCAGCA 58.903 47.619 3.95 0.00 40.55 4.41
288 295 4.082523 TGCCGAGAAGAAGCCGGG 62.083 66.667 2.18 0.00 43.17 5.73
293 303 1.221840 GAGAAGAAGCCGGGATGCA 59.778 57.895 2.18 0.00 0.00 3.96
395 405 0.251121 TTCTTTGGGCGCATCCTCAA 60.251 50.000 10.83 2.41 34.39 3.02
416 426 0.538287 GCTGGCCTGAAGACAAACCT 60.538 55.000 14.77 0.00 0.00 3.50
449 460 0.251653 ACCGTCCTCAAGTGCCTCTA 60.252 55.000 0.00 0.00 0.00 2.43
621 862 0.961019 TGATGCTGCAAGGGTTTGTC 59.039 50.000 6.36 0.00 36.65 3.18
644 885 5.428457 TCCCTGATGTGGTGACATATAACTT 59.572 40.000 0.00 0.00 42.81 2.66
699 940 3.072330 TGGACAATGCAGAGTTGTTCCTA 59.928 43.478 7.36 0.00 39.72 2.94
719 960 1.066430 ACGGCAGATGGTTGATAACGT 60.066 47.619 0.00 0.00 0.00 3.99
810 1051 4.499183 AGGCGACTAAAATGTTCAGAGAG 58.501 43.478 0.00 0.00 40.61 3.20
882 1123 0.901580 ACTCCCTTTGCAAGCATGGG 60.902 55.000 20.68 20.68 39.67 4.00
954 1195 6.460399 GCCATAAGCCTAATATCGTCTCCTAG 60.460 46.154 0.00 0.00 34.35 3.02
995 1236 1.619827 TGCCAATGAAGGAAGCTTTGG 59.380 47.619 0.00 3.28 41.16 3.28
1049 1290 2.544267 GCGATGGTATTGTAGCCAACTC 59.456 50.000 0.00 0.00 38.38 3.01
1050 1291 3.741388 GCGATGGTATTGTAGCCAACTCT 60.741 47.826 0.00 0.00 38.38 3.24
1051 1292 4.442706 CGATGGTATTGTAGCCAACTCTT 58.557 43.478 0.00 0.00 38.38 2.85
1183 1424 5.367937 ACCTATTCAACTCTGGTATCTGCAT 59.632 40.000 0.00 0.00 0.00 3.96
1534 1778 1.674962 GTGAGATGGAGAAAGCATGCC 59.325 52.381 15.66 0.00 0.00 4.40
1699 1946 3.006940 ACAACTGTTACATATGGCACCG 58.993 45.455 7.80 2.42 0.00 4.94
1723 1970 3.016736 CTGGATGGGTTATTTCGTGCTT 58.983 45.455 0.00 0.00 0.00 3.91
1793 2040 7.293073 AGTGGAATAATGGTGAGCATTTCTAT 58.707 34.615 15.51 0.22 0.00 1.98
1944 2191 7.120432 GCATTCTACAAGGTTCAAAGAAGAGAT 59.880 37.037 0.00 0.00 30.30 2.75
1962 2209 7.548780 AGAAGAGATGAAGCTAGTGATTTGTTC 59.451 37.037 0.00 0.00 0.00 3.18
2111 2358 2.668945 GTGCTCCTAGCTCTCGTTTTTC 59.331 50.000 0.00 0.00 42.97 2.29
2117 2364 6.241207 TCCTAGCTCTCGTTTTTCAAATTG 57.759 37.500 0.00 0.00 0.00 2.32
2140 2387 7.534085 TGTATCATCAGAACGTTATTGGAAC 57.466 36.000 0.00 0.00 0.00 3.62
2160 2407 0.644937 AGGGGGAGATAGTCAAGGCT 59.355 55.000 0.00 0.00 0.00 4.58
2163 2410 0.761802 GGGAGATAGTCAAGGCTGGG 59.238 60.000 0.00 0.00 0.00 4.45
2194 2441 6.187727 TGTCTAAAGTTGATGGGAAGACTT 57.812 37.500 0.00 0.00 34.41 3.01
2546 2816 9.638239 TTATCTAACTCAAATGGTTGCAATTTC 57.362 29.630 0.59 0.00 34.50 2.17
2600 2870 7.210873 GGAAGGTATCGATATGTGTTCTTTCT 58.789 38.462 8.66 0.00 0.00 2.52
2818 3104 1.338105 GCCACCTTTGAAAATGGAGCC 60.338 52.381 11.05 0.00 43.40 4.70
2833 3119 2.909577 GCCAGAGGCTGCAGATCT 59.090 61.111 20.43 16.75 46.69 2.75
2834 3120 1.524165 GCCAGAGGCTGCAGATCTG 60.524 63.158 29.08 29.08 46.69 2.90
2835 3121 1.969200 GCCAGAGGCTGCAGATCTGA 61.969 60.000 33.88 10.43 46.69 3.27
2836 3122 0.540454 CCAGAGGCTGCAGATCTGAA 59.460 55.000 33.88 15.81 42.48 3.02
2837 3123 1.654317 CAGAGGCTGCAGATCTGAAC 58.346 55.000 30.92 13.50 42.48 3.18
2838 3124 1.207570 CAGAGGCTGCAGATCTGAACT 59.792 52.381 30.92 16.27 42.48 3.01
2839 3125 2.429971 CAGAGGCTGCAGATCTGAACTA 59.570 50.000 30.92 7.93 42.48 2.24
2840 3126 3.102972 AGAGGCTGCAGATCTGAACTAA 58.897 45.455 27.04 4.78 0.00 2.24
2841 3127 3.132646 AGAGGCTGCAGATCTGAACTAAG 59.867 47.826 27.04 14.45 0.00 2.18
2842 3128 1.939255 GGCTGCAGATCTGAACTAAGC 59.061 52.381 27.04 21.81 0.00 3.09
2843 3129 2.625737 GCTGCAGATCTGAACTAAGCA 58.374 47.619 27.04 13.67 0.00 3.91
2844 3130 3.005554 GCTGCAGATCTGAACTAAGCAA 58.994 45.455 27.04 0.00 0.00 3.91
2845 3131 3.181512 GCTGCAGATCTGAACTAAGCAAC 60.182 47.826 27.04 6.74 0.00 4.17
2846 3132 3.999001 CTGCAGATCTGAACTAAGCAACA 59.001 43.478 27.04 9.26 0.00 3.33
2847 3133 4.388485 TGCAGATCTGAACTAAGCAACAA 58.612 39.130 27.04 0.00 0.00 2.83
2848 3134 4.453478 TGCAGATCTGAACTAAGCAACAAG 59.547 41.667 27.04 0.00 0.00 3.16
2849 3135 4.671250 GCAGATCTGAACTAAGCAACAAGC 60.671 45.833 27.04 0.63 46.19 4.01
2869 3155 4.596801 GCTGATCTGAACTAAACAGCAG 57.403 45.455 0.00 0.00 46.30 4.24
3059 3412 5.405269 GCAAACCTTTGTATAAGTTTGGCTG 59.595 40.000 14.26 0.00 45.77 4.85
3061 3414 7.653647 CAAACCTTTGTATAAGTTTGGCTGTA 58.346 34.615 6.58 0.00 43.29 2.74
3087 3440 6.458206 GCCATTTCGTAGCAGAATTTGATGTA 60.458 38.462 0.00 0.00 0.00 2.29
3093 3446 8.942338 TCGTAGCAGAATTTGATGTATAGTTT 57.058 30.769 0.00 0.00 0.00 2.66
3111 3464 1.648116 TTAAGGGCCTGTTCGGTAGT 58.352 50.000 6.92 0.00 34.25 2.73
3113 3466 0.323957 AAGGGCCTGTTCGGTAGTTC 59.676 55.000 6.92 0.00 34.25 3.01
3124 3477 1.006281 TCGGTAGTTCCCTAGCTTCCA 59.994 52.381 0.00 0.00 39.11 3.53
3125 3478 1.409427 CGGTAGTTCCCTAGCTTCCAG 59.591 57.143 0.00 0.00 39.11 3.86
3131 3484 1.794714 TCCCTAGCTTCCAGATCCAC 58.205 55.000 0.00 0.00 0.00 4.02
3132 3485 0.390860 CCCTAGCTTCCAGATCCACG 59.609 60.000 0.00 0.00 0.00 4.94
3140 3493 2.691409 TCCAGATCCACGAAATCCAC 57.309 50.000 0.00 0.00 0.00 4.02
3141 3494 1.134818 TCCAGATCCACGAAATCCACG 60.135 52.381 0.00 0.00 0.00 4.94
3142 3495 1.134818 CCAGATCCACGAAATCCACGA 60.135 52.381 0.00 0.00 34.70 4.35
3195 3548 2.103432 AGCTGGCTTCTCAGATCTGATG 59.897 50.000 25.30 18.23 39.13 3.07
3196 3549 2.485903 CTGGCTTCTCAGATCTGATGC 58.514 52.381 25.30 25.07 39.13 3.91
3207 3560 3.003378 CAGATCTGATGCGGTTCTACGTA 59.997 47.826 18.34 0.00 35.98 3.57
3214 3567 6.474427 TCTGATGCGGTTCTACGTATAAAAAG 59.526 38.462 0.00 0.00 39.25 2.27
3222 3575 5.333299 TCTACGTATAAAAAGCTGGAGCA 57.667 39.130 0.00 0.00 45.16 4.26
3266 3619 1.025812 ACGAGATCTGGAGTTAGCCG 58.974 55.000 12.14 2.45 0.00 5.52
3290 3643 2.495366 TACGAACGAATGCCACCGCT 62.495 55.000 0.14 0.00 35.36 5.52
3300 3653 1.805945 GCCACCGCTAAGTGACTCG 60.806 63.158 0.00 0.00 40.34 4.18
3307 3660 1.605058 GCTAAGTGACTCGAGGGGCA 61.605 60.000 18.41 9.05 0.00 5.36
3309 3662 0.541063 TAAGTGACTCGAGGGGCACA 60.541 55.000 26.28 13.37 33.85 4.57
3320 3673 2.266689 GGGCACATACCGGTTCGT 59.733 61.111 15.04 7.75 0.00 3.85
3323 3676 1.473788 GGGCACATACCGGTTCGTTAT 60.474 52.381 15.04 0.00 0.00 1.89
3327 3680 4.084223 GGCACATACCGGTTCGTTATATTG 60.084 45.833 15.04 1.54 0.00 1.90
3332 3685 4.050852 ACCGGTTCGTTATATTGTCTCC 57.949 45.455 0.00 0.00 0.00 3.71
3333 3686 3.181472 ACCGGTTCGTTATATTGTCTCCC 60.181 47.826 0.00 0.00 0.00 4.30
3335 3688 3.181473 CGGTTCGTTATATTGTCTCCCCA 60.181 47.826 0.00 0.00 0.00 4.96
3343 3696 0.621862 ATTGTCTCCCCACTCTCCCC 60.622 60.000 0.00 0.00 0.00 4.81
3370 4359 0.623723 GAATGGGCCACCTTACCTCA 59.376 55.000 9.28 0.00 37.76 3.86
3371 4360 0.331616 AATGGGCCACCTTACCTCAC 59.668 55.000 9.28 0.00 37.76 3.51
3374 4363 1.282382 GGGCCACCTTACCTCACTAA 58.718 55.000 4.39 0.00 0.00 2.24
3375 4364 1.065636 GGGCCACCTTACCTCACTAAC 60.066 57.143 4.39 0.00 0.00 2.34
3380 4369 0.177373 CCTTACCTCACTAACGGGCC 59.823 60.000 0.00 0.00 0.00 5.80
3387 4376 1.002087 CTCACTAACGGGCCAACTTCT 59.998 52.381 4.39 0.00 0.00 2.85
3391 4380 0.611714 TAACGGGCCAACTTCTCTCC 59.388 55.000 4.39 0.00 0.00 3.71
3395 4384 0.988063 GGGCCAACTTCTCTCCTTCT 59.012 55.000 4.39 0.00 0.00 2.85
3397 4386 2.431454 GGCCAACTTCTCTCCTTCTTG 58.569 52.381 0.00 0.00 0.00 3.02
3400 4389 2.431454 CAACTTCTCTCCTTCTTGGGC 58.569 52.381 0.00 0.00 36.20 5.36
3403 4392 1.905215 CTTCTCTCCTTCTTGGGCTGA 59.095 52.381 0.00 0.00 36.20 4.26
3438 4427 4.608948 AAAATAGAAGCCGGATCGATCT 57.391 40.909 23.96 0.34 0.00 2.75
3455 4444 3.612860 CGATCTCACCGAACGATTTTCTT 59.387 43.478 0.00 0.00 39.95 2.52
3456 4445 4.796830 CGATCTCACCGAACGATTTTCTTA 59.203 41.667 0.00 0.00 39.95 2.10
3463 4452 3.272567 CGAACGATTTTCTTAGCGATGC 58.727 45.455 0.00 0.00 0.00 3.91
3465 4454 4.509891 GAACGATTTTCTTAGCGATGCTC 58.490 43.478 0.00 0.00 40.44 4.26
3480 4469 3.148279 CTCCGGCCGGTAGAAGCT 61.148 66.667 41.57 0.00 36.47 3.74
3566 4555 7.092716 GCCCTTAGTGCATCATTTAATTATGG 58.907 38.462 0.00 0.00 0.00 2.74
3634 4623 5.705441 TCTCTTGGCAATGTTTACCTGTAAG 59.295 40.000 0.00 0.00 0.00 2.34
3635 4624 5.626142 TCTTGGCAATGTTTACCTGTAAGA 58.374 37.500 0.00 0.00 34.07 2.10
3673 4663 9.619316 TGTAGTAATTTGACATTGTTTGCATAC 57.381 29.630 0.00 0.00 0.00 2.39
3691 4681 4.728882 GCATACGAATGGTTGCAGAAGAAG 60.729 45.833 0.00 0.00 34.72 2.85
3715 4705 5.675575 GCATGATAGCAGGTTTCTCTTGTTG 60.676 44.000 0.00 0.00 0.00 3.33
3717 4707 1.322442 AGCAGGTTTCTCTTGTTGCC 58.678 50.000 0.00 0.00 32.21 4.52
3718 4708 1.032014 GCAGGTTTCTCTTGTTGCCA 58.968 50.000 0.00 0.00 0.00 4.92
3719 4709 1.408702 GCAGGTTTCTCTTGTTGCCAA 59.591 47.619 0.00 0.00 0.00 4.52
3720 4710 2.799562 GCAGGTTTCTCTTGTTGCCAAC 60.800 50.000 0.00 0.00 0.00 3.77
3721 4711 2.031870 AGGTTTCTCTTGTTGCCAACC 58.968 47.619 4.90 0.00 34.95 3.77
3722 4712 2.031870 GGTTTCTCTTGTTGCCAACCT 58.968 47.619 4.90 0.00 32.47 3.50
3723 4713 2.223805 GGTTTCTCTTGTTGCCAACCTG 60.224 50.000 4.90 0.00 32.47 4.00
3724 4714 2.427095 GTTTCTCTTGTTGCCAACCTGT 59.573 45.455 4.90 0.00 0.00 4.00
3725 4715 3.569194 TTCTCTTGTTGCCAACCTGTA 57.431 42.857 4.90 0.00 0.00 2.74
3726 4716 3.126001 TCTCTTGTTGCCAACCTGTAG 57.874 47.619 4.90 0.00 0.00 2.74
3727 4717 2.438021 TCTCTTGTTGCCAACCTGTAGT 59.562 45.455 4.90 0.00 0.00 2.73
3728 4718 3.118038 TCTCTTGTTGCCAACCTGTAGTT 60.118 43.478 4.90 0.00 40.16 2.24
3729 4719 4.101898 TCTCTTGTTGCCAACCTGTAGTTA 59.898 41.667 4.90 0.00 36.18 2.24
3730 4720 4.385825 TCTTGTTGCCAACCTGTAGTTAG 58.614 43.478 4.90 0.00 36.18 2.34
3731 4721 2.500229 TGTTGCCAACCTGTAGTTAGC 58.500 47.619 4.90 0.00 42.68 3.09
3735 4725 2.779506 GCCAACCTGTAGTTAGCAACT 58.220 47.619 6.74 6.74 42.04 3.16
3736 4726 3.146847 GCCAACCTGTAGTTAGCAACTT 58.853 45.455 6.82 0.00 42.04 2.66
3737 4727 4.320870 GCCAACCTGTAGTTAGCAACTTA 58.679 43.478 6.82 0.00 42.04 2.24
3738 4728 4.941873 GCCAACCTGTAGTTAGCAACTTAT 59.058 41.667 6.82 0.00 42.04 1.73
3739 4729 5.414765 GCCAACCTGTAGTTAGCAACTTATT 59.585 40.000 6.82 0.00 42.04 1.40
3740 4730 6.622896 GCCAACCTGTAGTTAGCAACTTATTG 60.623 42.308 6.82 5.67 42.04 1.90
3775 4766 7.168219 TGTTTGCTACAGATTTAGAGGTCATT 58.832 34.615 0.00 0.00 31.68 2.57
3798 4789 5.985911 TCTGTTGCTAGTTATAAGGGGTTC 58.014 41.667 0.00 0.00 0.00 3.62
3804 4795 7.685849 TGCTAGTTATAAGGGGTTCAGTATT 57.314 36.000 0.00 0.00 0.00 1.89
3805 4796 8.097791 TGCTAGTTATAAGGGGTTCAGTATTT 57.902 34.615 0.00 0.00 0.00 1.40
3878 4876 3.118261 AGCAGACAGTTACATGTATGGGG 60.118 47.826 6.36 0.00 41.58 4.96
3888 4893 9.567776 CAGTTACATGTATGGGGAAATAACATA 57.432 33.333 6.36 0.00 0.00 2.29
3953 4958 9.672086 CGAAATTACTTTACCATTGTGAAGAAA 57.328 29.630 8.26 0.00 39.72 2.52
3959 4964 6.770785 ACTTTACCATTGTGAAGAAAGTAGCA 59.229 34.615 8.26 0.00 39.72 3.49
3960 4965 7.284489 ACTTTACCATTGTGAAGAAAGTAGCAA 59.716 33.333 8.26 0.00 39.72 3.91
3974 4979 9.672673 AAGAAAGTAGCAATATAAAGCTTCAGA 57.327 29.630 0.00 0.00 42.05 3.27
3989 4994 8.985315 AAAGCTTCAGATGATGATGGTATTAA 57.015 30.769 0.00 0.00 41.45 1.40
4002 5007 6.759272 TGATGGTATTAAGCACTGATCTACC 58.241 40.000 0.00 0.00 35.57 3.18
4003 5008 6.554982 TGATGGTATTAAGCACTGATCTACCT 59.445 38.462 0.00 0.00 35.57 3.08
4016 5021 5.044105 ACTGATCTACCTTAGCCCCAAATTT 60.044 40.000 0.00 0.00 0.00 1.82
4070 5075 3.140144 TCCTCTCCAGGACACCAAATTTT 59.860 43.478 0.00 0.00 44.75 1.82
4082 5087 6.293027 GGACACCAAATTTTCATTGAAGCAAG 60.293 38.462 0.00 0.00 0.00 4.01
4120 5125 4.141482 TGTCTTCTGCCAAGTTCTAACCTT 60.141 41.667 0.00 0.00 0.00 3.50
4231 5238 4.023622 GTCTTTTGAGAGCCAGAAAAGTCC 60.024 45.833 0.00 0.00 37.74 3.85
4304 5311 6.476053 AGCGAACTTTAAATGTAGTAGCTAGC 59.524 38.462 6.62 6.62 37.00 3.42
4350 5357 2.124011 GCAACATGGTGCAATATCGG 57.876 50.000 30.55 0.00 44.29 4.18
4570 5577 2.034687 GGTGCTGGTGTGCTCCAT 59.965 61.111 0.00 0.00 43.67 3.41
4573 5580 2.265739 GCTGGTGTGCTCCATCGA 59.734 61.111 0.00 0.00 36.84 3.59
4576 5583 0.873312 CTGGTGTGCTCCATCGATCG 60.873 60.000 9.36 9.36 36.84 3.69
4714 5721 3.003480 GGTTGGCTACAGAAGTGATGAC 58.997 50.000 0.80 0.00 0.00 3.06
4937 5945 6.072728 GCACCTCATTGTGTCTGTACATAAAA 60.073 38.462 0.00 0.00 39.72 1.52
4954 5962 6.186957 ACATAAAAGTGCATGAGGTTGGATA 58.813 36.000 0.00 0.00 0.00 2.59
4955 5963 6.663093 ACATAAAAGTGCATGAGGTTGGATAA 59.337 34.615 0.00 0.00 0.00 1.75
4995 6003 1.081892 CAGTTGGCTGATCGGAGTTG 58.918 55.000 5.48 0.00 45.28 3.16
5277 6285 3.253188 TGGTCAGTGAGTTTATTGCAAGC 59.747 43.478 4.94 0.00 0.00 4.01
5402 6410 8.023706 TCTTCGTACTTGTGATGCATCTATATC 58.976 37.037 26.32 12.29 0.00 1.63
5558 6567 4.993705 TTTTAGGAAAGGGAGAGCTTCA 57.006 40.909 0.00 0.00 0.00 3.02
5559 6568 5.520748 TTTTAGGAAAGGGAGAGCTTCAT 57.479 39.130 0.00 0.00 0.00 2.57
5560 6569 5.520748 TTTAGGAAAGGGAGAGCTTCATT 57.479 39.130 0.00 0.00 0.00 2.57
5561 6570 3.643199 AGGAAAGGGAGAGCTTCATTC 57.357 47.619 0.00 0.00 0.00 2.67
5562 6571 2.915604 AGGAAAGGGAGAGCTTCATTCA 59.084 45.455 0.00 0.00 0.00 2.57
5563 6572 3.526841 AGGAAAGGGAGAGCTTCATTCAT 59.473 43.478 0.00 0.00 0.00 2.57
5564 6573 4.723789 AGGAAAGGGAGAGCTTCATTCATA 59.276 41.667 0.00 0.00 0.00 2.15
5565 6574 5.372066 AGGAAAGGGAGAGCTTCATTCATAT 59.628 40.000 0.00 0.00 0.00 1.78
5566 6575 5.704978 GGAAAGGGAGAGCTTCATTCATATC 59.295 44.000 0.00 0.00 0.00 1.63
5567 6576 5.901413 AAGGGAGAGCTTCATTCATATCA 57.099 39.130 0.00 0.00 0.00 2.15
5568 6577 5.486735 AGGGAGAGCTTCATTCATATCAG 57.513 43.478 0.00 0.00 0.00 2.90
5569 6578 4.906664 AGGGAGAGCTTCATTCATATCAGT 59.093 41.667 0.00 0.00 0.00 3.41
5570 6579 6.080682 AGGGAGAGCTTCATTCATATCAGTA 58.919 40.000 0.00 0.00 0.00 2.74
5571 6580 6.556495 AGGGAGAGCTTCATTCATATCAGTAA 59.444 38.462 0.00 0.00 0.00 2.24
5572 6581 6.873076 GGGAGAGCTTCATTCATATCAGTAAG 59.127 42.308 0.00 0.00 0.00 2.34
5573 6582 7.441017 GGAGAGCTTCATTCATATCAGTAAGT 58.559 38.462 0.00 0.00 0.00 2.24
5574 6583 7.598493 GGAGAGCTTCATTCATATCAGTAAGTC 59.402 40.741 0.00 0.00 0.00 3.01
5575 6584 8.248904 AGAGCTTCATTCATATCAGTAAGTCT 57.751 34.615 0.00 0.00 0.00 3.24
5576 6585 8.143193 AGAGCTTCATTCATATCAGTAAGTCTG 58.857 37.037 0.00 0.00 44.85 3.51
5599 6608 8.932945 CTGAGTTACTATCAGAAGCAATTACA 57.067 34.615 0.00 0.00 45.80 2.41
5600 6609 9.539825 CTGAGTTACTATCAGAAGCAATTACAT 57.460 33.333 0.00 0.00 45.80 2.29
5601 6610 9.317936 TGAGTTACTATCAGAAGCAATTACATG 57.682 33.333 0.00 0.00 0.00 3.21
5602 6611 8.147642 AGTTACTATCAGAAGCAATTACATGC 57.852 34.615 0.00 0.00 46.78 4.06
5620 6629 2.320215 CTTCGAAGCTTGTGGCACA 58.680 52.632 17.96 17.96 44.79 4.57
5621 6630 0.877071 CTTCGAAGCTTGTGGCACAT 59.123 50.000 22.73 6.09 44.52 3.21
5622 6631 0.874390 TTCGAAGCTTGTGGCACATC 59.126 50.000 22.73 14.70 44.52 3.06
5623 6632 0.250252 TCGAAGCTTGTGGCACATCA 60.250 50.000 22.73 6.49 44.52 3.07
5624 6633 0.167470 CGAAGCTTGTGGCACATCAG 59.833 55.000 22.73 17.63 44.52 2.90
5625 6634 0.109412 GAAGCTTGTGGCACATCAGC 60.109 55.000 28.46 28.46 44.52 4.26
5626 6635 3.677527 GCTTGTGGCACATCAGCT 58.322 55.556 28.41 0.00 44.52 4.24
5627 6636 2.858622 GCTTGTGGCACATCAGCTA 58.141 52.632 28.41 11.36 44.52 3.32
5628 6637 1.167851 GCTTGTGGCACATCAGCTAA 58.832 50.000 28.41 10.70 44.52 3.09
5629 6638 1.747355 GCTTGTGGCACATCAGCTAAT 59.253 47.619 28.41 0.00 44.52 1.73
5630 6639 2.945008 GCTTGTGGCACATCAGCTAATA 59.055 45.455 28.41 9.38 44.52 0.98
5631 6640 3.003068 GCTTGTGGCACATCAGCTAATAG 59.997 47.826 28.41 17.99 44.52 1.73
5632 6641 4.445453 CTTGTGGCACATCAGCTAATAGA 58.555 43.478 22.73 0.19 44.52 1.98
5633 6642 4.486125 TGTGGCACATCAGCTAATAGAA 57.514 40.909 17.96 0.00 44.52 2.10
5634 6643 4.842574 TGTGGCACATCAGCTAATAGAAA 58.157 39.130 17.96 0.00 44.52 2.52
5635 6644 4.877823 TGTGGCACATCAGCTAATAGAAAG 59.122 41.667 17.96 0.00 44.52 2.62
5636 6645 5.118990 GTGGCACATCAGCTAATAGAAAGA 58.881 41.667 13.86 0.00 44.52 2.52
5637 6646 5.586243 GTGGCACATCAGCTAATAGAAAGAA 59.414 40.000 13.86 0.00 44.52 2.52
5638 6647 6.094048 GTGGCACATCAGCTAATAGAAAGAAA 59.906 38.462 13.86 0.00 44.52 2.52
5639 6648 6.830324 TGGCACATCAGCTAATAGAAAGAAAT 59.170 34.615 0.00 0.00 34.17 2.17
5640 6649 7.012704 TGGCACATCAGCTAATAGAAAGAAATC 59.987 37.037 0.00 0.00 34.17 2.17
5641 6650 7.358830 GCACATCAGCTAATAGAAAGAAATCC 58.641 38.462 0.00 0.00 0.00 3.01
5642 6651 7.521261 GCACATCAGCTAATAGAAAGAAATCCC 60.521 40.741 0.00 0.00 0.00 3.85
5643 6652 7.001073 ACATCAGCTAATAGAAAGAAATCCCC 58.999 38.462 0.00 0.00 0.00 4.81
5644 6653 6.575244 TCAGCTAATAGAAAGAAATCCCCA 57.425 37.500 0.00 0.00 0.00 4.96
5645 6654 7.154191 TCAGCTAATAGAAAGAAATCCCCAT 57.846 36.000 0.00 0.00 0.00 4.00
5646 6655 7.586349 TCAGCTAATAGAAAGAAATCCCCATT 58.414 34.615 0.00 0.00 0.00 3.16
5647 6656 7.721399 TCAGCTAATAGAAAGAAATCCCCATTC 59.279 37.037 0.00 0.00 0.00 2.67
5648 6657 7.503566 CAGCTAATAGAAAGAAATCCCCATTCA 59.496 37.037 0.00 0.00 0.00 2.57
5649 6658 7.503902 AGCTAATAGAAAGAAATCCCCATTCAC 59.496 37.037 0.00 0.00 0.00 3.18
5650 6659 7.503902 GCTAATAGAAAGAAATCCCCATTCACT 59.496 37.037 0.00 0.00 0.00 3.41
5651 6660 7.888250 AATAGAAAGAAATCCCCATTCACTC 57.112 36.000 0.00 0.00 0.00 3.51
5652 6661 5.527026 AGAAAGAAATCCCCATTCACTCT 57.473 39.130 0.00 0.00 0.00 3.24
5653 6662 6.642733 AGAAAGAAATCCCCATTCACTCTA 57.357 37.500 0.00 0.00 0.00 2.43
5654 6663 6.657875 AGAAAGAAATCCCCATTCACTCTAG 58.342 40.000 0.00 0.00 0.00 2.43
5655 6664 4.429854 AGAAATCCCCATTCACTCTAGC 57.570 45.455 0.00 0.00 0.00 3.42
5656 6665 3.782523 AGAAATCCCCATTCACTCTAGCA 59.217 43.478 0.00 0.00 0.00 3.49
5657 6666 4.414846 AGAAATCCCCATTCACTCTAGCAT 59.585 41.667 0.00 0.00 0.00 3.79
5658 6667 5.608437 AGAAATCCCCATTCACTCTAGCATA 59.392 40.000 0.00 0.00 0.00 3.14
5659 6668 5.495926 AATCCCCATTCACTCTAGCATAG 57.504 43.478 0.00 0.00 41.04 2.23
5660 6669 3.242867 TCCCCATTCACTCTAGCATAGG 58.757 50.000 0.00 0.00 39.78 2.57
5661 6670 2.289945 CCCCATTCACTCTAGCATAGGC 60.290 54.545 0.00 0.00 39.78 3.93
5662 6671 2.369860 CCCATTCACTCTAGCATAGGCA 59.630 50.000 0.67 0.00 44.61 4.75
5663 6672 3.556633 CCCATTCACTCTAGCATAGGCAG 60.557 52.174 0.67 0.00 44.61 4.85
5664 6673 2.898729 TTCACTCTAGCATAGGCAGC 57.101 50.000 0.67 0.00 44.61 5.25
5665 6674 1.780503 TCACTCTAGCATAGGCAGCA 58.219 50.000 0.67 0.00 44.61 4.41
5666 6675 2.110578 TCACTCTAGCATAGGCAGCAA 58.889 47.619 0.67 0.00 44.61 3.91
5667 6676 2.102084 TCACTCTAGCATAGGCAGCAAG 59.898 50.000 0.67 0.00 44.61 4.01
5668 6677 1.202627 ACTCTAGCATAGGCAGCAAGC 60.203 52.381 0.67 0.00 44.61 4.01
5669 6678 1.070445 CTCTAGCATAGGCAGCAAGCT 59.930 52.381 0.67 0.00 44.61 3.74
5670 6679 1.069823 TCTAGCATAGGCAGCAAGCTC 59.930 52.381 0.67 0.00 44.61 4.09
5671 6680 0.832626 TAGCATAGGCAGCAAGCTCA 59.167 50.000 0.67 0.00 44.61 4.26
5672 6681 0.183014 AGCATAGGCAGCAAGCTCAT 59.817 50.000 0.67 0.00 44.61 2.90
5673 6682 0.311165 GCATAGGCAGCAAGCTCATG 59.689 55.000 0.00 6.25 44.79 3.07
5674 6683 0.311165 CATAGGCAGCAAGCTCATGC 59.689 55.000 1.95 1.95 46.78 4.06
5691 6700 2.789917 CGCAGCCACATTGCTCTC 59.210 61.111 0.00 0.00 40.32 3.20
5692 6701 2.758089 CGCAGCCACATTGCTCTCC 61.758 63.158 0.00 0.00 40.32 3.71
5693 6702 2.413142 GCAGCCACATTGCTCTCCC 61.413 63.158 0.00 0.00 40.32 4.30
5694 6703 1.302285 CAGCCACATTGCTCTCCCT 59.698 57.895 0.00 0.00 40.32 4.20
5695 6704 0.543277 CAGCCACATTGCTCTCCCTA 59.457 55.000 0.00 0.00 40.32 3.53
5696 6705 1.142465 CAGCCACATTGCTCTCCCTAT 59.858 52.381 0.00 0.00 40.32 2.57
5697 6706 1.142465 AGCCACATTGCTCTCCCTATG 59.858 52.381 0.00 0.00 36.75 2.23
5698 6707 1.816961 GCCACATTGCTCTCCCTATGG 60.817 57.143 0.00 0.00 0.00 2.74
5699 6708 1.770658 CCACATTGCTCTCCCTATGGA 59.229 52.381 0.00 0.00 38.75 3.41
5700 6709 2.486191 CCACATTGCTCTCCCTATGGAC 60.486 54.545 0.00 0.00 35.03 4.02
5701 6710 2.437281 CACATTGCTCTCCCTATGGACT 59.563 50.000 0.00 0.00 35.03 3.85
5702 6711 3.118112 CACATTGCTCTCCCTATGGACTT 60.118 47.826 0.00 0.00 35.03 3.01
5703 6712 3.525199 ACATTGCTCTCCCTATGGACTTT 59.475 43.478 0.00 0.00 35.03 2.66
5704 6713 3.634397 TTGCTCTCCCTATGGACTTTG 57.366 47.619 0.00 0.00 35.03 2.77
5705 6714 1.839994 TGCTCTCCCTATGGACTTTGG 59.160 52.381 0.00 0.00 35.03 3.28
5706 6715 2.119495 GCTCTCCCTATGGACTTTGGA 58.881 52.381 0.00 0.00 35.03 3.53
5707 6716 2.505819 GCTCTCCCTATGGACTTTGGAA 59.494 50.000 0.00 0.00 35.03 3.53
5708 6717 3.054361 GCTCTCCCTATGGACTTTGGAAA 60.054 47.826 0.00 0.00 35.03 3.13
5709 6718 4.518249 CTCTCCCTATGGACTTTGGAAAC 58.482 47.826 0.00 0.00 35.03 2.78
5710 6719 3.913799 TCTCCCTATGGACTTTGGAAACA 59.086 43.478 0.00 0.00 35.03 2.83
5711 6720 4.019321 TCTCCCTATGGACTTTGGAAACAG 60.019 45.833 0.00 0.00 37.42 3.16
5712 6721 3.913799 TCCCTATGGACTTTGGAAACAGA 59.086 43.478 0.00 0.00 37.42 3.41
5713 6722 4.352595 TCCCTATGGACTTTGGAAACAGAA 59.647 41.667 0.00 0.00 37.42 3.02
5714 6723 4.459337 CCCTATGGACTTTGGAAACAGAAC 59.541 45.833 0.00 0.00 44.54 3.01
5715 6724 5.070001 CCTATGGACTTTGGAAACAGAACA 58.930 41.667 0.00 0.00 44.54 3.18
5716 6725 5.534654 CCTATGGACTTTGGAAACAGAACAA 59.465 40.000 0.00 0.00 44.54 2.83
5717 6726 4.981806 TGGACTTTGGAAACAGAACAAG 57.018 40.909 0.00 0.00 44.54 3.16
5718 6727 3.130340 TGGACTTTGGAAACAGAACAAGC 59.870 43.478 0.00 0.00 44.54 4.01
5719 6728 3.381590 GGACTTTGGAAACAGAACAAGCT 59.618 43.478 0.00 0.00 44.54 3.74
5720 6729 4.498177 GGACTTTGGAAACAGAACAAGCTC 60.498 45.833 0.00 0.00 44.54 4.09
5721 6730 3.381590 ACTTTGGAAACAGAACAAGCTCC 59.618 43.478 0.00 0.00 44.54 4.70
5722 6731 2.727123 TGGAAACAGAACAAGCTCCA 57.273 45.000 0.00 0.00 35.01 3.86
5723 6732 3.011566 TGGAAACAGAACAAGCTCCAA 57.988 42.857 0.00 0.00 35.01 3.53
5724 6733 3.360867 TGGAAACAGAACAAGCTCCAAA 58.639 40.909 0.00 0.00 35.01 3.28
5725 6734 3.130340 TGGAAACAGAACAAGCTCCAAAC 59.870 43.478 0.00 0.00 35.01 2.93
5726 6735 3.381590 GGAAACAGAACAAGCTCCAAACT 59.618 43.478 0.00 0.00 0.00 2.66
5727 6736 4.498177 GGAAACAGAACAAGCTCCAAACTC 60.498 45.833 0.00 0.00 0.00 3.01
5728 6737 2.576615 ACAGAACAAGCTCCAAACTCC 58.423 47.619 0.00 0.00 0.00 3.85
5729 6738 2.173569 ACAGAACAAGCTCCAAACTCCT 59.826 45.455 0.00 0.00 0.00 3.69
5730 6739 3.217626 CAGAACAAGCTCCAAACTCCTT 58.782 45.455 0.00 0.00 0.00 3.36
5731 6740 3.004106 CAGAACAAGCTCCAAACTCCTTG 59.996 47.826 0.00 0.00 40.26 3.61
5732 6741 3.117888 AGAACAAGCTCCAAACTCCTTGA 60.118 43.478 6.27 0.00 38.37 3.02
5733 6742 3.515602 ACAAGCTCCAAACTCCTTGAT 57.484 42.857 6.27 0.00 38.37 2.57
5734 6743 3.416156 ACAAGCTCCAAACTCCTTGATC 58.584 45.455 6.27 0.00 38.37 2.92
5735 6744 3.181440 ACAAGCTCCAAACTCCTTGATCA 60.181 43.478 6.27 0.00 38.37 2.92
5736 6745 4.015084 CAAGCTCCAAACTCCTTGATCAT 58.985 43.478 0.00 0.00 37.46 2.45
5737 6746 5.188434 CAAGCTCCAAACTCCTTGATCATA 58.812 41.667 0.00 0.00 37.46 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.324014 TGGAGAAGGAGGAGGAGGAT 58.676 55.000 0.00 0.00 0.00 3.24
299 309 3.645660 TGAAGATGGTGGGCGGCA 61.646 61.111 12.47 0.00 0.00 5.69
350 360 2.042831 CCTAGGTCCGGACGACGTT 61.043 63.158 27.68 12.94 42.99 3.99
416 426 2.358125 CGGTGTTGGCGGTGATCA 60.358 61.111 0.00 0.00 0.00 2.92
449 460 0.515564 GTCGGTATGTTTTGCGCAGT 59.484 50.000 11.31 0.00 0.00 4.40
621 862 5.296151 AGTTATATGTCACCACATCAGGG 57.704 43.478 0.00 0.00 42.66 4.45
644 885 5.412640 CCTTGCACAATGCTTCAATAATCA 58.587 37.500 2.02 0.00 45.31 2.57
654 895 3.376078 CGGGCCTTGCACAATGCT 61.376 61.111 0.84 0.00 45.31 3.79
699 940 1.066430 ACGTTATCAACCATCTGCCGT 60.066 47.619 0.00 0.00 0.00 5.68
719 960 3.181453 TGTCACTTTATCCGGTGGAACAA 60.181 43.478 0.00 0.00 44.16 2.83
810 1051 3.567478 ATAAGACCCCTGCTTGTCATC 57.433 47.619 0.00 0.00 33.89 2.92
834 1075 5.276461 ACGAGCTCCATGTGACAATATTA 57.724 39.130 8.47 0.00 0.00 0.98
846 1087 1.137872 GAGTCCATGAACGAGCTCCAT 59.862 52.381 8.47 2.94 0.00 3.41
851 1092 0.250513 AAGGGAGTCCATGAACGAGC 59.749 55.000 12.30 0.00 34.83 5.03
882 1123 3.360249 TCTGCAGCTTCTTTGCTTTTC 57.640 42.857 9.47 0.00 41.98 2.29
954 1195 4.457257 GCATACCCATGAAGAAGAATAGCC 59.543 45.833 0.00 0.00 33.67 3.93
1072 1313 6.309357 TCATTCCTCCTTTAGCATATGCATT 58.691 36.000 28.62 12.35 45.16 3.56
1087 1328 3.505480 AGCTTCATCCATCATTCCTCC 57.495 47.619 0.00 0.00 0.00 4.30
1183 1424 2.603075 AGCCTACCCATTCTGCAAAA 57.397 45.000 0.00 0.00 0.00 2.44
1534 1778 4.996758 TGATACCATGGCATCAAATACTCG 59.003 41.667 23.05 0.00 0.00 4.18
1605 1849 7.494625 TCATCGATCCTTCCACTTTTACAATAC 59.505 37.037 0.00 0.00 0.00 1.89
1699 1946 3.311596 GCACGAAATAACCCATCCAGTAC 59.688 47.826 0.00 0.00 0.00 2.73
1944 2191 3.433274 CAGCGAACAAATCACTAGCTTCA 59.567 43.478 0.00 0.00 0.00 3.02
1962 2209 1.746615 ACTGGCTGGTAATGCAGCG 60.747 57.895 0.00 0.00 44.75 5.18
2111 2358 9.225201 CCAATAACGTTCTGATGATACAATTTG 57.775 33.333 2.82 0.00 0.00 2.32
2117 2364 7.254455 CCTGTTCCAATAACGTTCTGATGATAC 60.254 40.741 2.82 2.85 0.00 2.24
2140 2387 0.761802 GCCTTGACTATCTCCCCCTG 59.238 60.000 0.00 0.00 0.00 4.45
2160 2407 9.573166 CCATCAACTTTAGACATATATTTCCCA 57.427 33.333 0.00 0.00 0.00 4.37
2194 2441 6.207691 AGTAGTTGAAGCTTCAAGCAAAAA 57.792 33.333 36.07 15.54 46.80 1.94
2348 2595 2.499289 CTCAACTGTACCCTCTGAGCAT 59.501 50.000 0.00 0.00 0.00 3.79
2357 2604 2.927028 ACCAACAACTCAACTGTACCC 58.073 47.619 0.00 0.00 0.00 3.69
2546 2816 3.428534 GCAAGCAAAAACCGTTATTCCAG 59.571 43.478 0.00 0.00 0.00 3.86
2600 2870 6.735678 TTTGTATTCATTGCGCTTCTTCTA 57.264 33.333 9.73 0.00 0.00 2.10
2642 2912 8.411991 TCCCTACAGATTTCGGTTAAAAATTT 57.588 30.769 0.00 0.00 0.00 1.82
2818 3104 1.207570 AGTTCAGATCTGCAGCCTCTG 59.792 52.381 27.32 27.32 38.18 3.35
2840 3126 9.115598 CTGTTTAGTTCAGATCAGCTTGTTGCT 62.116 40.741 0.00 0.00 42.94 3.91
2841 3127 5.149977 GTTTAGTTCAGATCAGCTTGTTGC 58.850 41.667 0.00 0.00 43.29 4.17
2842 3128 6.304356 TGTTTAGTTCAGATCAGCTTGTTG 57.696 37.500 0.00 0.00 0.00 3.33
2843 3129 5.049129 GCTGTTTAGTTCAGATCAGCTTGTT 60.049 40.000 7.56 0.00 42.98 2.83
2844 3130 4.453819 GCTGTTTAGTTCAGATCAGCTTGT 59.546 41.667 7.56 0.00 42.98 3.16
2845 3131 4.453478 TGCTGTTTAGTTCAGATCAGCTTG 59.547 41.667 14.34 0.00 45.39 4.01
2846 3132 4.645535 TGCTGTTTAGTTCAGATCAGCTT 58.354 39.130 14.34 0.00 45.39 3.74
2847 3133 4.252073 CTGCTGTTTAGTTCAGATCAGCT 58.748 43.478 14.34 0.00 45.39 4.24
2848 3134 3.373439 CCTGCTGTTTAGTTCAGATCAGC 59.627 47.826 7.83 7.83 45.39 4.26
2849 3135 3.373439 GCCTGCTGTTTAGTTCAGATCAG 59.627 47.826 0.00 0.00 35.20 2.90
2850 3136 3.008375 AGCCTGCTGTTTAGTTCAGATCA 59.992 43.478 0.00 0.00 35.20 2.92
2869 3155 0.874390 TCAAGCGATGTGTTCAAGCC 59.126 50.000 0.00 0.00 33.84 4.35
3059 3412 5.064707 TCAAATTCTGCTACGAAATGGCTAC 59.935 40.000 0.00 0.00 35.37 3.58
3061 3414 4.009675 TCAAATTCTGCTACGAAATGGCT 58.990 39.130 0.00 0.00 35.37 4.75
3087 3440 2.574824 ACCGAACAGGCCCTTAAACTAT 59.425 45.455 0.00 0.00 46.52 2.12
3093 3446 1.551883 GAACTACCGAACAGGCCCTTA 59.448 52.381 0.00 0.00 46.52 2.69
3094 3447 0.323957 GAACTACCGAACAGGCCCTT 59.676 55.000 0.00 0.00 46.52 3.95
3111 3464 2.119495 GTGGATCTGGAAGCTAGGGAA 58.881 52.381 0.00 0.00 0.00 3.97
3113 3466 0.390860 CGTGGATCTGGAAGCTAGGG 59.609 60.000 0.00 0.00 0.00 3.53
3124 3477 2.483714 CCATCGTGGATTTCGTGGATCT 60.484 50.000 0.00 0.00 40.96 2.75
3125 3478 1.867233 CCATCGTGGATTTCGTGGATC 59.133 52.381 0.00 0.00 40.96 3.36
3140 3493 1.665679 CTGTTCGGTCCAAATCCATCG 59.334 52.381 0.00 0.00 0.00 3.84
3141 3494 2.678336 GACTGTTCGGTCCAAATCCATC 59.322 50.000 0.71 0.00 0.00 3.51
3142 3495 2.711542 GACTGTTCGGTCCAAATCCAT 58.288 47.619 0.71 0.00 0.00 3.41
3184 3537 2.033424 CGTAGAACCGCATCAGATCTGA 59.967 50.000 27.03 27.03 44.59 3.27
3186 3539 2.025155 ACGTAGAACCGCATCAGATCT 58.975 47.619 0.00 0.00 0.00 2.75
3190 3543 6.578020 TTTTTATACGTAGAACCGCATCAG 57.422 37.500 1.33 0.00 0.00 2.90
3195 3548 4.260091 CCAGCTTTTTATACGTAGAACCGC 60.260 45.833 1.33 5.77 0.00 5.68
3196 3549 5.104374 TCCAGCTTTTTATACGTAGAACCG 58.896 41.667 1.33 0.00 0.00 4.44
3266 3619 3.422655 GGTGGCATTCGTTCGTAAATTC 58.577 45.455 0.00 0.00 0.00 2.17
3290 3643 0.541063 TGTGCCCCTCGAGTCACTTA 60.541 55.000 21.92 7.86 0.00 2.24
3300 3653 1.153229 GAACCGGTATGTGCCCCTC 60.153 63.158 8.00 0.00 0.00 4.30
3307 3660 6.152932 AGACAATATAACGAACCGGTATGT 57.847 37.500 8.00 6.68 40.14 2.29
3309 3662 5.279156 GGGAGACAATATAACGAACCGGTAT 60.279 44.000 8.00 0.00 42.60 2.73
3320 3673 4.232091 GGGAGAGTGGGGAGACAATATAA 58.768 47.826 0.00 0.00 0.00 0.98
3323 3676 1.344087 GGGGAGAGTGGGGAGACAATA 60.344 57.143 0.00 0.00 0.00 1.90
3327 3680 0.264955 TATGGGGAGAGTGGGGAGAC 59.735 60.000 0.00 0.00 0.00 3.36
3332 3685 2.126882 TCAACATATGGGGAGAGTGGG 58.873 52.381 7.80 0.00 0.00 4.61
3333 3686 3.931907 TTCAACATATGGGGAGAGTGG 57.068 47.619 7.80 0.00 0.00 4.00
3335 3688 4.443978 CCATTCAACATATGGGGAGAGT 57.556 45.455 7.80 0.00 39.11 3.24
3343 3696 2.669781 AGGTGGCCCATTCAACATATG 58.330 47.619 0.00 0.00 0.00 1.78
3370 4359 1.275573 GAGAGAAGTTGGCCCGTTAGT 59.724 52.381 0.00 0.00 0.00 2.24
3371 4360 1.405661 GGAGAGAAGTTGGCCCGTTAG 60.406 57.143 0.00 0.00 0.00 2.34
3374 4363 1.128188 AAGGAGAGAAGTTGGCCCGT 61.128 55.000 0.00 0.00 0.00 5.28
3375 4364 0.391793 GAAGGAGAGAAGTTGGCCCG 60.392 60.000 0.00 0.00 0.00 6.13
3380 4369 2.039613 AGCCCAAGAAGGAGAGAAGTTG 59.960 50.000 0.00 0.00 41.22 3.16
3387 4376 1.544825 CCGTCAGCCCAAGAAGGAGA 61.545 60.000 0.00 0.00 41.22 3.71
3419 4408 3.057174 GTGAGATCGATCCGGCTTCTATT 60.057 47.826 21.66 0.00 0.00 1.73
3420 4409 2.490115 GTGAGATCGATCCGGCTTCTAT 59.510 50.000 21.66 0.00 0.00 1.98
3427 4416 0.317938 GTTCGGTGAGATCGATCCGG 60.318 60.000 21.66 10.90 42.71 5.14
3428 4417 0.657659 CGTTCGGTGAGATCGATCCG 60.658 60.000 21.66 18.13 42.84 4.18
3437 4426 3.241678 CGCTAAGAAAATCGTTCGGTGAG 60.242 47.826 0.00 0.00 0.00 3.51
3438 4427 2.664568 CGCTAAGAAAATCGTTCGGTGA 59.335 45.455 0.00 0.00 0.00 4.02
3465 4454 4.530857 CCAGCTTCTACCGGCCGG 62.531 72.222 42.17 42.17 42.03 6.13
3480 4469 3.982316 CTCCGCATGCCAGCTTCCA 62.982 63.158 13.15 0.00 0.00 3.53
3500 4489 1.821216 TCGCAAAATCTCCAACTCCC 58.179 50.000 0.00 0.00 0.00 4.30
3505 4494 1.541147 CCAGCTTCGCAAAATCTCCAA 59.459 47.619 0.00 0.00 0.00 3.53
3508 4497 0.179153 GCCCAGCTTCGCAAAATCTC 60.179 55.000 0.00 0.00 0.00 2.75
3605 4594 5.539955 AGGTAAACATTGCCAAGAGAAACAT 59.460 36.000 0.14 0.00 37.96 2.71
3663 4653 2.294512 TGCAACCATTCGTATGCAAACA 59.705 40.909 0.00 0.00 45.04 2.83
3673 4663 1.536766 TGCTTCTTCTGCAACCATTCG 59.463 47.619 0.00 0.00 37.51 3.34
3691 4681 3.944015 ACAAGAGAAACCTGCTATCATGC 59.056 43.478 0.00 0.00 0.00 4.06
3731 4721 6.586751 CAAACAGAGCATTTGCAATAAGTTG 58.413 36.000 0.00 0.00 45.16 3.16
3732 4722 6.774354 CAAACAGAGCATTTGCAATAAGTT 57.226 33.333 0.00 0.00 45.16 2.66
3775 4766 5.486063 TGAACCCCTTATAACTAGCAACAGA 59.514 40.000 0.00 0.00 0.00 3.41
3888 4893 4.785376 AGAATAGGAACAGAACATGGGTCT 59.215 41.667 0.00 0.00 0.00 3.85
3937 4942 7.759489 ATTGCTACTTTCTTCACAATGGTAA 57.241 32.000 0.00 0.00 0.00 2.85
3953 4958 9.217278 CATCATCTGAAGCTTTATATTGCTACT 57.783 33.333 0.00 0.00 38.75 2.57
3974 4979 7.687388 AGATCAGTGCTTAATACCATCATCAT 58.313 34.615 0.00 0.00 0.00 2.45
3987 4992 3.641906 GGGCTAAGGTAGATCAGTGCTTA 59.358 47.826 0.00 0.00 0.00 3.09
3989 4994 2.043227 GGGCTAAGGTAGATCAGTGCT 58.957 52.381 0.00 0.00 0.00 4.40
4002 5007 5.745312 AAAGGAAGAAATTTGGGGCTAAG 57.255 39.130 0.00 0.00 0.00 2.18
4003 5008 6.126623 ACAAAAAGGAAGAAATTTGGGGCTAA 60.127 34.615 0.00 0.00 37.15 3.09
4016 5021 5.393866 AGCATTCCCTTACAAAAAGGAAGA 58.606 37.500 5.35 0.00 41.50 2.87
4070 5075 9.797556 CAAGATCAATAATTCTTGCTTCAATGA 57.202 29.630 0.00 0.00 41.53 2.57
4082 5087 7.148188 TGGCAGAAGACACAAGATCAATAATTC 60.148 37.037 0.00 0.00 0.00 2.17
4120 5125 8.598764 TGGATATATTTCCCCCTTTTTAGGTA 57.401 34.615 9.44 0.00 34.67 3.08
4208 5215 4.023622 GGACTTTTCTGGCTCTCAAAAGAC 60.024 45.833 9.72 4.40 38.77 3.01
4213 5220 2.439507 ACTGGACTTTTCTGGCTCTCAA 59.560 45.455 0.00 0.00 0.00 3.02
4231 5238 5.163663 TGTTGAGGAACAAAAGTAGCAACTG 60.164 40.000 0.00 0.00 39.20 3.16
4436 5443 7.093988 ACCTGCAACAGCAATACAATTATACAA 60.094 33.333 0.00 0.00 37.91 2.41
4437 5444 6.376864 ACCTGCAACAGCAATACAATTATACA 59.623 34.615 0.00 0.00 37.91 2.29
4438 5445 6.692681 CACCTGCAACAGCAATACAATTATAC 59.307 38.462 0.00 0.00 37.91 1.47
4439 5446 6.183360 CCACCTGCAACAGCAATACAATTATA 60.183 38.462 0.00 0.00 37.91 0.98
4440 5447 5.394443 CCACCTGCAACAGCAATACAATTAT 60.394 40.000 0.00 0.00 37.91 1.28
4441 5448 4.082300 CCACCTGCAACAGCAATACAATTA 60.082 41.667 0.00 0.00 37.91 1.40
4442 5449 3.306225 CCACCTGCAACAGCAATACAATT 60.306 43.478 0.00 0.00 37.91 2.32
4443 5450 2.231964 CCACCTGCAACAGCAATACAAT 59.768 45.455 0.00 0.00 37.91 2.71
4570 5577 1.131883 GAAAAGAGACGGGTCGATCGA 59.868 52.381 15.15 15.15 34.09 3.59
4573 5580 2.424246 GAGAGAAAAGAGACGGGTCGAT 59.576 50.000 0.00 0.00 34.09 3.59
4576 5583 3.086282 AGAGAGAGAAAAGAGACGGGTC 58.914 50.000 0.00 0.00 0.00 4.46
4659 5666 8.682936 AACCATTTATCTCTGCTAGTAATTGG 57.317 34.615 0.00 0.56 33.74 3.16
4714 5721 6.279123 ACGGCATTGCTAGATCTATATCATG 58.721 40.000 8.82 5.19 34.28 3.07
4937 5945 4.785346 ATCTTATCCAACCTCATGCACT 57.215 40.909 0.00 0.00 0.00 4.40
4954 5962 3.425659 GGTCCTGGCTTTTGAGAATCTT 58.574 45.455 0.00 0.00 34.92 2.40
4955 5963 2.291217 GGGTCCTGGCTTTTGAGAATCT 60.291 50.000 0.00 0.00 34.92 2.40
4995 6003 2.523015 CTTGATGGTGAAGCAATTCGC 58.477 47.619 0.00 0.00 42.91 4.70
5277 6285 8.980481 AAGTATTACTTGGATAACATTCCTGG 57.020 34.615 8.27 0.00 37.00 4.45
5402 6410 1.627943 CGATTGCTCTCGCTTCACG 59.372 57.895 0.00 0.00 45.62 4.35
5492 6501 3.857038 TCGATACCCCGCTTGGCC 61.857 66.667 0.00 0.00 0.00 5.36
5503 6512 9.503399 AAATATAAGATGGAAAAGGGTCGATAC 57.497 33.333 0.00 0.00 0.00 2.24
5537 6546 4.993705 TGAAGCTCTCCCTTTCCTAAAA 57.006 40.909 0.00 0.00 0.00 1.52
5538 6547 5.014123 TGAATGAAGCTCTCCCTTTCCTAAA 59.986 40.000 0.00 0.00 0.00 1.85
5539 6548 4.536090 TGAATGAAGCTCTCCCTTTCCTAA 59.464 41.667 0.00 0.00 0.00 2.69
5540 6549 4.104086 TGAATGAAGCTCTCCCTTTCCTA 58.896 43.478 0.00 0.00 0.00 2.94
5541 6550 2.915604 TGAATGAAGCTCTCCCTTTCCT 59.084 45.455 0.00 0.00 0.00 3.36
5542 6551 3.356529 TGAATGAAGCTCTCCCTTTCC 57.643 47.619 0.00 0.00 0.00 3.13
5543 6552 6.294473 TGATATGAATGAAGCTCTCCCTTTC 58.706 40.000 0.00 0.00 0.00 2.62
5544 6553 6.126536 ACTGATATGAATGAAGCTCTCCCTTT 60.127 38.462 0.00 0.00 0.00 3.11
5545 6554 5.369110 ACTGATATGAATGAAGCTCTCCCTT 59.631 40.000 0.00 0.00 0.00 3.95
5546 6555 4.906664 ACTGATATGAATGAAGCTCTCCCT 59.093 41.667 0.00 0.00 0.00 4.20
5547 6556 5.226194 ACTGATATGAATGAAGCTCTCCC 57.774 43.478 0.00 0.00 0.00 4.30
5548 6557 7.441017 ACTTACTGATATGAATGAAGCTCTCC 58.559 38.462 0.00 0.00 0.00 3.71
5549 6558 8.359642 AGACTTACTGATATGAATGAAGCTCTC 58.640 37.037 0.00 0.00 0.00 3.20
5550 6559 8.248904 AGACTTACTGATATGAATGAAGCTCT 57.751 34.615 0.00 0.00 0.00 4.09
5566 6575 7.913297 GCTTCTGATAGTAACTCAGACTTACTG 59.087 40.741 11.02 0.00 46.58 2.74
5567 6576 7.612244 TGCTTCTGATAGTAACTCAGACTTACT 59.388 37.037 3.41 7.42 46.58 2.24
5568 6577 7.763356 TGCTTCTGATAGTAACTCAGACTTAC 58.237 38.462 3.41 0.00 46.58 2.34
5569 6578 7.939784 TGCTTCTGATAGTAACTCAGACTTA 57.060 36.000 3.41 0.00 46.58 2.24
5570 6579 6.842437 TGCTTCTGATAGTAACTCAGACTT 57.158 37.500 3.41 0.00 46.58 3.01
5571 6580 6.842437 TTGCTTCTGATAGTAACTCAGACT 57.158 37.500 3.41 0.00 46.58 3.24
5572 6581 9.026074 GTAATTGCTTCTGATAGTAACTCAGAC 57.974 37.037 3.41 0.00 46.58 3.51
5573 6582 8.749354 TGTAATTGCTTCTGATAGTAACTCAGA 58.251 33.333 0.18 0.18 45.58 3.27
5574 6583 8.932945 TGTAATTGCTTCTGATAGTAACTCAG 57.067 34.615 0.00 0.00 41.23 3.35
5575 6584 9.317936 CATGTAATTGCTTCTGATAGTAACTCA 57.682 33.333 0.00 0.00 0.00 3.41
5576 6585 8.279103 GCATGTAATTGCTTCTGATAGTAACTC 58.721 37.037 0.00 0.00 39.57 3.01
5577 6586 8.147642 GCATGTAATTGCTTCTGATAGTAACT 57.852 34.615 0.00 0.00 39.57 2.24
5602 6611 0.877071 ATGTGCCACAAGCTTCGAAG 59.123 50.000 21.02 21.02 44.23 3.79
5603 6612 0.874390 GATGTGCCACAAGCTTCGAA 59.126 50.000 0.00 0.00 44.23 3.71
5604 6613 0.250252 TGATGTGCCACAAGCTTCGA 60.250 50.000 0.00 0.00 44.23 3.71
5605 6614 0.167470 CTGATGTGCCACAAGCTTCG 59.833 55.000 0.00 0.00 44.23 3.79
5606 6615 0.109412 GCTGATGTGCCACAAGCTTC 60.109 55.000 13.06 2.12 44.23 3.86
5607 6616 0.538977 AGCTGATGTGCCACAAGCTT 60.539 50.000 16.40 0.00 44.23 3.74
5608 6617 0.325933 TAGCTGATGTGCCACAAGCT 59.674 50.000 23.33 23.33 44.23 3.74
5609 6618 1.167851 TTAGCTGATGTGCCACAAGC 58.832 50.000 12.55 12.55 44.14 4.01
5610 6619 4.445453 TCTATTAGCTGATGTGCCACAAG 58.555 43.478 0.00 0.00 0.00 3.16
5611 6620 4.486125 TCTATTAGCTGATGTGCCACAA 57.514 40.909 0.00 0.00 0.00 3.33
5612 6621 4.486125 TTCTATTAGCTGATGTGCCACA 57.514 40.909 0.00 0.00 0.00 4.17
5613 6622 5.118990 TCTTTCTATTAGCTGATGTGCCAC 58.881 41.667 0.32 0.00 0.00 5.01
5614 6623 5.357742 TCTTTCTATTAGCTGATGTGCCA 57.642 39.130 0.32 0.00 0.00 4.92
5615 6624 6.683974 TTTCTTTCTATTAGCTGATGTGCC 57.316 37.500 0.32 0.00 0.00 5.01
5616 6625 7.358830 GGATTTCTTTCTATTAGCTGATGTGC 58.641 38.462 0.32 0.00 0.00 4.57
5617 6626 7.040823 GGGGATTTCTTTCTATTAGCTGATGTG 60.041 40.741 0.32 0.00 0.00 3.21
5618 6627 7.001073 GGGGATTTCTTTCTATTAGCTGATGT 58.999 38.462 0.32 0.00 0.00 3.06
5619 6628 7.000472 TGGGGATTTCTTTCTATTAGCTGATG 59.000 38.462 0.32 0.00 0.00 3.07
5620 6629 7.154191 TGGGGATTTCTTTCTATTAGCTGAT 57.846 36.000 0.00 0.00 0.00 2.90
5621 6630 6.575244 TGGGGATTTCTTTCTATTAGCTGA 57.425 37.500 0.00 0.00 0.00 4.26
5622 6631 7.503566 TGAATGGGGATTTCTTTCTATTAGCTG 59.496 37.037 0.00 0.00 0.00 4.24
5623 6632 7.503902 GTGAATGGGGATTTCTTTCTATTAGCT 59.496 37.037 0.00 0.00 0.00 3.32
5624 6633 7.503902 AGTGAATGGGGATTTCTTTCTATTAGC 59.496 37.037 0.00 0.00 0.00 3.09
5625 6634 8.986929 AGTGAATGGGGATTTCTTTCTATTAG 57.013 34.615 0.00 0.00 0.00 1.73
5626 6635 8.781951 AGAGTGAATGGGGATTTCTTTCTATTA 58.218 33.333 0.00 0.00 0.00 0.98
5627 6636 7.646884 AGAGTGAATGGGGATTTCTTTCTATT 58.353 34.615 0.00 0.00 0.00 1.73
5628 6637 7.218314 AGAGTGAATGGGGATTTCTTTCTAT 57.782 36.000 0.00 0.00 0.00 1.98
5629 6638 6.642733 AGAGTGAATGGGGATTTCTTTCTA 57.357 37.500 0.00 0.00 0.00 2.10
5630 6639 5.527026 AGAGTGAATGGGGATTTCTTTCT 57.473 39.130 0.00 0.00 0.00 2.52
5631 6640 5.298026 GCTAGAGTGAATGGGGATTTCTTTC 59.702 44.000 0.00 0.00 0.00 2.62
5632 6641 5.196695 GCTAGAGTGAATGGGGATTTCTTT 58.803 41.667 0.00 0.00 0.00 2.52
5633 6642 4.228210 TGCTAGAGTGAATGGGGATTTCTT 59.772 41.667 0.00 0.00 0.00 2.52
5634 6643 3.782523 TGCTAGAGTGAATGGGGATTTCT 59.217 43.478 0.00 0.00 0.00 2.52
5635 6644 4.156455 TGCTAGAGTGAATGGGGATTTC 57.844 45.455 0.00 0.00 0.00 2.17
5636 6645 4.803329 ATGCTAGAGTGAATGGGGATTT 57.197 40.909 0.00 0.00 0.00 2.17
5637 6646 4.288105 CCTATGCTAGAGTGAATGGGGATT 59.712 45.833 0.00 0.00 0.00 3.01
5638 6647 3.843027 CCTATGCTAGAGTGAATGGGGAT 59.157 47.826 0.00 0.00 0.00 3.85
5639 6648 3.242867 CCTATGCTAGAGTGAATGGGGA 58.757 50.000 0.00 0.00 0.00 4.81
5640 6649 2.289945 GCCTATGCTAGAGTGAATGGGG 60.290 54.545 0.00 0.00 33.53 4.96
5641 6650 2.369860 TGCCTATGCTAGAGTGAATGGG 59.630 50.000 0.00 0.00 38.71 4.00
5642 6651 3.661944 CTGCCTATGCTAGAGTGAATGG 58.338 50.000 0.00 0.00 38.71 3.16
5643 6652 3.065655 GCTGCCTATGCTAGAGTGAATG 58.934 50.000 0.00 0.00 38.71 2.67
5644 6653 2.702478 TGCTGCCTATGCTAGAGTGAAT 59.298 45.455 0.00 0.00 38.71 2.57
5645 6654 2.110578 TGCTGCCTATGCTAGAGTGAA 58.889 47.619 0.00 0.00 38.71 3.18
5646 6655 1.780503 TGCTGCCTATGCTAGAGTGA 58.219 50.000 0.00 0.00 38.71 3.41
5647 6656 2.481854 CTTGCTGCCTATGCTAGAGTG 58.518 52.381 0.00 0.00 35.83 3.51
5648 6657 1.202627 GCTTGCTGCCTATGCTAGAGT 60.203 52.381 0.00 0.00 35.83 3.24
5649 6658 1.070445 AGCTTGCTGCCTATGCTAGAG 59.930 52.381 0.00 0.00 44.23 2.43
5650 6659 1.069823 GAGCTTGCTGCCTATGCTAGA 59.930 52.381 0.00 0.00 44.23 2.43
5651 6660 1.202615 TGAGCTTGCTGCCTATGCTAG 60.203 52.381 0.00 0.00 44.23 3.42
5652 6661 0.832626 TGAGCTTGCTGCCTATGCTA 59.167 50.000 0.00 0.00 44.23 3.49
5653 6662 0.183014 ATGAGCTTGCTGCCTATGCT 59.817 50.000 0.00 1.16 44.23 3.79
5654 6663 0.311165 CATGAGCTTGCTGCCTATGC 59.689 55.000 0.00 0.00 44.23 3.14
5655 6664 0.311165 GCATGAGCTTGCTGCCTATG 59.689 55.000 3.04 1.33 44.23 2.23
5656 6665 1.164662 CGCATGAGCTTGCTGCCTAT 61.165 55.000 8.67 0.00 44.23 2.57
5657 6666 1.816679 CGCATGAGCTTGCTGCCTA 60.817 57.895 8.67 0.00 44.23 3.93
5658 6667 3.132139 CGCATGAGCTTGCTGCCT 61.132 61.111 8.67 0.00 44.23 4.75
5659 6668 4.849329 GCGCATGAGCTTGCTGCC 62.849 66.667 14.75 0.37 44.23 4.85
5660 6669 4.111016 TGCGCATGAGCTTGCTGC 62.111 61.111 22.25 15.59 40.54 5.25
5661 6670 2.100410 CTGCGCATGAGCTTGCTG 59.900 61.111 22.25 5.14 40.54 4.41
5662 6671 3.812019 GCTGCGCATGAGCTTGCT 61.812 61.111 22.25 0.00 40.54 3.91
5663 6672 4.849329 GGCTGCGCATGAGCTTGC 62.849 66.667 22.25 22.82 39.10 4.01
5664 6673 3.436924 TGGCTGCGCATGAGCTTG 61.437 61.111 22.25 15.27 39.10 4.01
5665 6674 3.437795 GTGGCTGCGCATGAGCTT 61.438 61.111 22.25 0.00 39.10 3.74
5666 6675 3.989838 ATGTGGCTGCGCATGAGCT 62.990 57.895 22.25 0.00 39.10 4.09
5667 6676 3.060020 AATGTGGCTGCGCATGAGC 62.060 57.895 12.24 15.17 35.57 4.26
5668 6677 1.226575 CAATGTGGCTGCGCATGAG 60.227 57.895 12.24 0.00 0.00 2.90
5669 6678 2.879168 CAATGTGGCTGCGCATGA 59.121 55.556 12.24 0.00 0.00 3.07
5670 6679 2.883730 GCAATGTGGCTGCGCATG 60.884 61.111 12.24 5.37 0.00 4.06
5671 6680 3.060020 GAGCAATGTGGCTGCGCAT 62.060 57.895 12.24 0.00 45.99 4.73
5672 6681 3.740397 GAGCAATGTGGCTGCGCA 61.740 61.111 10.98 10.98 45.99 6.09
5673 6682 3.392595 GAGAGCAATGTGGCTGCGC 62.393 63.158 0.00 0.00 45.99 6.09
5674 6683 2.758089 GGAGAGCAATGTGGCTGCG 61.758 63.158 0.00 0.00 45.99 5.18
5675 6684 2.413142 GGGAGAGCAATGTGGCTGC 61.413 63.158 0.00 0.00 45.99 5.25
5676 6685 0.543277 TAGGGAGAGCAATGTGGCTG 59.457 55.000 0.00 0.00 45.99 4.85
5677 6686 4.146137 CCATAGGGAGAGCAATGTGGCT 62.146 54.545 0.00 0.00 41.68 4.75
5678 6687 1.602311 CATAGGGAGAGCAATGTGGC 58.398 55.000 0.00 0.00 0.00 5.01
5679 6688 1.770658 TCCATAGGGAGAGCAATGTGG 59.229 52.381 0.00 0.00 38.64 4.17
5680 6689 2.437281 AGTCCATAGGGAGAGCAATGTG 59.563 50.000 0.00 0.00 46.12 3.21
5681 6690 2.769209 AGTCCATAGGGAGAGCAATGT 58.231 47.619 0.00 0.00 46.12 2.71
5682 6691 3.853355 AAGTCCATAGGGAGAGCAATG 57.147 47.619 0.00 0.00 46.12 2.82
5683 6692 3.117738 CCAAAGTCCATAGGGAGAGCAAT 60.118 47.826 0.00 0.00 46.12 3.56
5684 6693 2.239654 CCAAAGTCCATAGGGAGAGCAA 59.760 50.000 0.00 0.00 46.12 3.91
5685 6694 1.839994 CCAAAGTCCATAGGGAGAGCA 59.160 52.381 0.00 0.00 46.12 4.26
5686 6695 2.119495 TCCAAAGTCCATAGGGAGAGC 58.881 52.381 0.00 0.00 46.12 4.09
5687 6696 4.019321 TGTTTCCAAAGTCCATAGGGAGAG 60.019 45.833 0.00 0.00 46.12 3.20
5688 6697 3.913799 TGTTTCCAAAGTCCATAGGGAGA 59.086 43.478 0.00 0.00 46.12 3.71
5689 6698 4.019321 TCTGTTTCCAAAGTCCATAGGGAG 60.019 45.833 0.00 0.00 46.12 4.30
5690 6699 3.913799 TCTGTTTCCAAAGTCCATAGGGA 59.086 43.478 0.00 0.00 42.29 4.20
5691 6700 4.301072 TCTGTTTCCAAAGTCCATAGGG 57.699 45.455 0.00 0.00 0.00 3.53
5692 6701 5.070001 TGTTCTGTTTCCAAAGTCCATAGG 58.930 41.667 0.00 0.00 0.00 2.57
5693 6702 6.633500 TTGTTCTGTTTCCAAAGTCCATAG 57.367 37.500 0.00 0.00 0.00 2.23
5694 6703 5.009610 GCTTGTTCTGTTTCCAAAGTCCATA 59.990 40.000 0.00 0.00 0.00 2.74
5695 6704 4.202151 GCTTGTTCTGTTTCCAAAGTCCAT 60.202 41.667 0.00 0.00 0.00 3.41
5696 6705 3.130340 GCTTGTTCTGTTTCCAAAGTCCA 59.870 43.478 0.00 0.00 0.00 4.02
5697 6706 3.381590 AGCTTGTTCTGTTTCCAAAGTCC 59.618 43.478 0.00 0.00 0.00 3.85
5698 6707 4.498177 GGAGCTTGTTCTGTTTCCAAAGTC 60.498 45.833 0.00 0.00 0.00 3.01
5699 6708 3.381590 GGAGCTTGTTCTGTTTCCAAAGT 59.618 43.478 0.00 0.00 0.00 2.66
5700 6709 3.381272 TGGAGCTTGTTCTGTTTCCAAAG 59.619 43.478 0.00 0.00 32.15 2.77
5701 6710 3.360867 TGGAGCTTGTTCTGTTTCCAAA 58.639 40.909 0.00 0.00 32.15 3.28
5702 6711 3.011566 TGGAGCTTGTTCTGTTTCCAA 57.988 42.857 0.00 0.00 32.15 3.53
5703 6712 2.727123 TGGAGCTTGTTCTGTTTCCA 57.273 45.000 0.00 0.00 32.62 3.53
5704 6713 3.381590 AGTTTGGAGCTTGTTCTGTTTCC 59.618 43.478 0.00 0.00 0.00 3.13
5705 6714 4.498177 GGAGTTTGGAGCTTGTTCTGTTTC 60.498 45.833 0.00 0.00 0.00 2.78
5706 6715 3.381590 GGAGTTTGGAGCTTGTTCTGTTT 59.618 43.478 0.00 0.00 0.00 2.83
5707 6716 2.952310 GGAGTTTGGAGCTTGTTCTGTT 59.048 45.455 0.00 0.00 0.00 3.16
5708 6717 2.173569 AGGAGTTTGGAGCTTGTTCTGT 59.826 45.455 0.00 0.00 0.00 3.41
5709 6718 2.856222 AGGAGTTTGGAGCTTGTTCTG 58.144 47.619 0.00 0.00 0.00 3.02
5710 6719 3.117888 TCAAGGAGTTTGGAGCTTGTTCT 60.118 43.478 0.00 0.00 37.39 3.01
5711 6720 3.214328 TCAAGGAGTTTGGAGCTTGTTC 58.786 45.455 0.00 0.00 37.39 3.18
5712 6721 3.297134 TCAAGGAGTTTGGAGCTTGTT 57.703 42.857 0.00 0.00 37.39 2.83
5713 6722 3.181440 TGATCAAGGAGTTTGGAGCTTGT 60.181 43.478 0.00 0.00 37.39 3.16
5714 6723 3.415212 TGATCAAGGAGTTTGGAGCTTG 58.585 45.455 0.00 0.00 37.39 4.01
5715 6724 3.795688 TGATCAAGGAGTTTGGAGCTT 57.204 42.857 0.00 0.00 37.39 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.