Multiple sequence alignment - TraesCS1D01G068600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G068600 chr1D 100.000 3023 0 0 1 3023 50006422 50009444 0.000000e+00 5583.0
1 TraesCS1D01G068600 chr1D 90.774 1409 126 3 1614 3020 49973920 49975326 0.000000e+00 1879.0
2 TraesCS1D01G068600 chr1D 90.232 1423 136 1 1601 3020 50109261 50110683 0.000000e+00 1855.0
3 TraesCS1D01G068600 chr1D 88.959 1422 151 6 1601 3019 50023267 50024685 0.000000e+00 1751.0
4 TraesCS1D01G068600 chr1D 87.666 1427 172 4 1596 3020 49956941 49958365 0.000000e+00 1657.0
5 TraesCS1D01G068600 chr1D 92.614 704 39 5 911 1614 50108489 50109179 0.000000e+00 1000.0
6 TraesCS1D01G068600 chr1D 85.900 539 66 7 1081 1614 50059273 50059806 1.570000e-157 566.0
7 TraesCS1D01G068600 chr1D 82.405 682 83 21 927 1603 49956188 49956837 7.320000e-156 560.0
8 TraesCS1D01G068600 chr1D 81.127 710 108 19 921 1614 49616908 49617607 2.050000e-151 545.0
9 TraesCS1D01G068600 chr1D 82.403 591 84 13 1027 1614 49426338 49425765 5.820000e-137 497.0
10 TraesCS1D01G068600 chr1D 91.429 210 16 2 1 210 482339322 482339529 1.370000e-73 287.0
11 TraesCS1D01G068600 chr1D 95.349 129 5 1 736 863 315879256 315879128 1.420000e-48 204.0
12 TraesCS1D01G068600 chr1A 89.965 1425 140 1 1599 3020 49355468 49356892 0.000000e+00 1836.0
13 TraesCS1D01G068600 chr1A 89.216 1428 147 4 1598 3020 49347433 49348858 0.000000e+00 1777.0
14 TraesCS1D01G068600 chr1A 87.938 1426 170 2 1596 3020 49294062 49295486 0.000000e+00 1679.0
15 TraesCS1D01G068600 chr1A 90.603 713 48 6 905 1614 49354673 49355369 0.000000e+00 928.0
16 TraesCS1D01G068600 chr1A 84.615 507 74 4 1099 1603 49293454 49293958 4.500000e-138 501.0
17 TraesCS1D01G068600 chr1A 81.716 536 92 5 1082 1614 48999668 48999136 2.770000e-120 442.0
18 TraesCS1D01G068600 chr1A 75.000 404 74 18 204 597 52472723 52472337 8.670000e-36 161.0
19 TraesCS1D01G068600 chr1A 74.271 377 69 25 317 680 535727026 535727387 1.890000e-27 134.0
20 TraesCS1D01G068600 chr1A 81.618 136 23 2 581 715 56598881 56599015 8.860000e-21 111.0
21 TraesCS1D01G068600 chr1B 90.150 1330 124 2 1694 3020 70694934 70696259 0.000000e+00 1724.0
22 TraesCS1D01G068600 chr1B 87.868 1426 171 2 1596 3020 70334457 70335881 0.000000e+00 1674.0
23 TraesCS1D01G068600 chr1B 91.853 761 52 6 864 1614 70689735 70690495 0.000000e+00 1053.0
24 TraesCS1D01G068600 chr1B 81.625 751 105 21 861 1603 70333631 70334356 2.600000e-165 592.0
25 TraesCS1D01G068600 chr1B 84.615 117 16 2 565 679 676714012 676714128 6.850000e-22 115.0
26 TraesCS1D01G068600 chr4B 78.958 518 91 15 201 711 372265071 372264565 1.340000e-88 337.0
27 TraesCS1D01G068600 chr4B 91.429 210 18 0 1 210 37874844 37874635 3.810000e-74 289.0
28 TraesCS1D01G068600 chr4B 78.947 209 34 8 325 529 47032718 47032516 1.890000e-27 134.0
29 TraesCS1D01G068600 chr4B 87.379 103 12 1 580 681 590428588 590428690 1.900000e-22 117.0
30 TraesCS1D01G068600 chr5D 94.712 208 11 0 1 208 372466628 372466421 1.050000e-84 324.0
31 TraesCS1D01G068600 chr5D 79.141 489 70 23 233 711 526579526 526579992 2.930000e-80 309.0
32 TraesCS1D01G068600 chr5D 77.681 345 61 8 370 711 356122072 356122403 2.380000e-46 196.0
33 TraesCS1D01G068600 chr7D 93.810 210 13 0 1 210 529395107 529394898 1.750000e-82 316.0
34 TraesCS1D01G068600 chr4D 93.269 208 14 0 1 208 486341193 486341400 1.050000e-79 307.0
35 TraesCS1D01G068600 chr3D 92.857 210 15 0 1 210 575825231 575825022 3.790000e-79 305.0
36 TraesCS1D01G068600 chr3D 79.370 349 67 5 366 711 297599632 297599286 1.080000e-59 241.0
37 TraesCS1D01G068600 chr3D 96.748 123 4 0 741 863 359257840 359257718 3.950000e-49 206.0
38 TraesCS1D01G068600 chr3D 91.667 144 10 2 729 871 540108248 540108390 6.610000e-47 198.0
39 TraesCS1D01G068600 chr4A 92.788 208 15 0 1 208 472271176 472270969 4.900000e-78 302.0
40 TraesCS1D01G068600 chr4A 92.754 138 7 3 733 868 36352800 36352936 2.380000e-46 196.0
41 TraesCS1D01G068600 chr7A 92.788 208 14 1 1 208 719862578 719862372 1.760000e-77 300.0
42 TraesCS1D01G068600 chr7A 96.748 123 4 0 741 863 466311144 466311266 3.950000e-49 206.0
43 TraesCS1D01G068600 chr7A 93.478 138 7 1 727 864 486228183 486228318 1.420000e-48 204.0
44 TraesCS1D01G068600 chr7A 75.616 406 62 23 344 716 714028252 714028653 1.860000e-37 167.0
45 TraesCS1D01G068600 chr2B 91.429 210 18 0 1 210 116270041 116270250 3.810000e-74 289.0
46 TraesCS1D01G068600 chr2B 76.766 538 82 24 204 711 141565904 141565380 8.310000e-66 261.0
47 TraesCS1D01G068600 chr2B 79.545 220 38 7 319 534 154847639 154847423 1.880000e-32 150.0
48 TraesCS1D01G068600 chr5A 78.055 401 69 15 204 597 678078186 678078574 5.040000e-58 235.0
49 TraesCS1D01G068600 chr5A 97.581 124 3 0 740 863 577784192 577784069 2.360000e-51 213.0
50 TraesCS1D01G068600 chr5A 80.916 131 24 1 581 710 398785848 398785978 5.330000e-18 102.0
51 TraesCS1D01G068600 chr6D 96.748 123 4 0 741 863 345490303 345490425 3.950000e-49 206.0
52 TraesCS1D01G068600 chr6D 75.102 490 86 25 204 680 97214420 97213954 2.380000e-46 196.0
53 TraesCS1D01G068600 chr3B 96.000 125 5 0 741 865 541059801 541059925 1.420000e-48 204.0
54 TraesCS1D01G068600 chrUn 75.188 399 61 27 346 715 118925044 118925433 1.450000e-33 154.0
55 TraesCS1D01G068600 chr2D 74.505 404 75 22 204 597 293798939 293798554 1.880000e-32 150.0
56 TraesCS1D01G068600 chr2D 74.384 406 65 26 204 597 578680412 578680790 1.460000e-28 137.0
57 TraesCS1D01G068600 chr2D 87.879 99 5 3 204 302 522561986 522562077 3.190000e-20 110.0
58 TraesCS1D01G068600 chr7B 74.710 431 61 29 325 711 38672958 38673384 6.750000e-32 148.0
59 TraesCS1D01G068600 chr5B 80.628 191 33 4 346 534 148990968 148990780 8.730000e-31 145.0
60 TraesCS1D01G068600 chr5B 79.412 136 26 2 581 715 636979926 636980060 8.920000e-16 95.3
61 TraesCS1D01G068600 chr2A 80.749 187 31 5 345 529 2353277 2353460 1.130000e-29 141.0
62 TraesCS1D01G068600 chr6B 78.744 207 38 5 325 529 570985324 570985122 1.890000e-27 134.0
63 TraesCS1D01G068600 chr6A 83.621 116 16 3 567 680 594737921 594738035 4.120000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G068600 chr1D 50006422 50009444 3022 False 5583.0 5583 100.0000 1 3023 1 chr1D.!!$F3 3022
1 TraesCS1D01G068600 chr1D 49973920 49975326 1406 False 1879.0 1879 90.7740 1614 3020 1 chr1D.!!$F2 1406
2 TraesCS1D01G068600 chr1D 50023267 50024685 1418 False 1751.0 1751 88.9590 1601 3019 1 chr1D.!!$F4 1418
3 TraesCS1D01G068600 chr1D 50108489 50110683 2194 False 1427.5 1855 91.4230 911 3020 2 chr1D.!!$F8 2109
4 TraesCS1D01G068600 chr1D 49956188 49958365 2177 False 1108.5 1657 85.0355 927 3020 2 chr1D.!!$F7 2093
5 TraesCS1D01G068600 chr1D 50059273 50059806 533 False 566.0 566 85.9000 1081 1614 1 chr1D.!!$F5 533
6 TraesCS1D01G068600 chr1D 49616908 49617607 699 False 545.0 545 81.1270 921 1614 1 chr1D.!!$F1 693
7 TraesCS1D01G068600 chr1D 49425765 49426338 573 True 497.0 497 82.4030 1027 1614 1 chr1D.!!$R1 587
8 TraesCS1D01G068600 chr1A 49347433 49348858 1425 False 1777.0 1777 89.2160 1598 3020 1 chr1A.!!$F1 1422
9 TraesCS1D01G068600 chr1A 49354673 49356892 2219 False 1382.0 1836 90.2840 905 3020 2 chr1A.!!$F5 2115
10 TraesCS1D01G068600 chr1A 49293454 49295486 2032 False 1090.0 1679 86.2765 1099 3020 2 chr1A.!!$F4 1921
11 TraesCS1D01G068600 chr1A 48999136 48999668 532 True 442.0 442 81.7160 1082 1614 1 chr1A.!!$R1 532
12 TraesCS1D01G068600 chr1B 70694934 70696259 1325 False 1724.0 1724 90.1500 1694 3020 1 chr1B.!!$F2 1326
13 TraesCS1D01G068600 chr1B 70333631 70335881 2250 False 1133.0 1674 84.7465 861 3020 2 chr1B.!!$F4 2159
14 TraesCS1D01G068600 chr1B 70689735 70690495 760 False 1053.0 1053 91.8530 864 1614 1 chr1B.!!$F1 750
15 TraesCS1D01G068600 chr4B 372264565 372265071 506 True 337.0 337 78.9580 201 711 1 chr4B.!!$R3 510
16 TraesCS1D01G068600 chr2B 141565380 141565904 524 True 261.0 261 76.7660 204 711 1 chr2B.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 330 0.026285 GAAAATGATCGTCGCGTGGG 59.974 55.0 5.77 0.0 0.0 4.61 F
568 575 0.036306 ACTCCTGTTTTACCTGGGCG 59.964 55.0 0.00 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 2228 0.250513 AAGGGAGTCCATGAACGAGC 59.749 55.0 12.3 0.0 34.83 5.03 R
2251 2560 2.603075 AGCCTACCCATTCTGCAAAA 57.397 45.0 0.0 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.755697 GCAAAACGAGCCAGAACTC 57.244 52.632 0.00 0.00 0.00 3.01
22 23 0.944386 GCAAAACGAGCCAGAACTCA 59.056 50.000 0.00 0.00 36.42 3.41
23 24 1.334149 GCAAAACGAGCCAGAACTCAC 60.334 52.381 0.00 0.00 36.42 3.51
24 25 1.264288 CAAAACGAGCCAGAACTCACC 59.736 52.381 0.00 0.00 36.42 4.02
25 26 0.759346 AAACGAGCCAGAACTCACCT 59.241 50.000 0.00 0.00 36.42 4.00
26 27 1.629043 AACGAGCCAGAACTCACCTA 58.371 50.000 0.00 0.00 36.42 3.08
27 28 0.889306 ACGAGCCAGAACTCACCTAC 59.111 55.000 0.00 0.00 36.42 3.18
28 29 0.173708 CGAGCCAGAACTCACCTACC 59.826 60.000 0.00 0.00 36.42 3.18
29 30 0.173708 GAGCCAGAACTCACCTACCG 59.826 60.000 0.00 0.00 36.65 4.02
30 31 1.448013 GCCAGAACTCACCTACCGC 60.448 63.158 0.00 0.00 0.00 5.68
31 32 1.153823 CCAGAACTCACCTACCGCG 60.154 63.158 0.00 0.00 0.00 6.46
32 33 1.153823 CAGAACTCACCTACCGCGG 60.154 63.158 26.86 26.86 0.00 6.46
33 34 2.508663 GAACTCACCTACCGCGGC 60.509 66.667 28.58 0.00 0.00 6.53
34 35 4.078516 AACTCACCTACCGCGGCC 62.079 66.667 28.58 0.00 0.00 6.13
36 37 4.208686 CTCACCTACCGCGGCCTC 62.209 72.222 28.58 0.00 0.00 4.70
47 48 4.161295 CGGCCTCGGATTCCAGCA 62.161 66.667 0.00 0.00 0.00 4.41
48 49 2.512896 GGCCTCGGATTCCAGCAT 59.487 61.111 3.09 0.00 0.00 3.79
49 50 1.599240 GGCCTCGGATTCCAGCATC 60.599 63.158 3.09 0.00 0.00 3.91
50 51 1.958205 GCCTCGGATTCCAGCATCG 60.958 63.158 3.09 0.00 0.00 3.84
51 52 1.443407 CCTCGGATTCCAGCATCGT 59.557 57.895 3.09 0.00 0.00 3.73
52 53 0.877649 CCTCGGATTCCAGCATCGTG 60.878 60.000 3.09 0.00 0.00 4.35
53 54 0.179100 CTCGGATTCCAGCATCGTGT 60.179 55.000 3.09 0.00 0.00 4.49
54 55 0.249120 TCGGATTCCAGCATCGTGTT 59.751 50.000 3.09 0.00 0.00 3.32
55 56 0.374758 CGGATTCCAGCATCGTGTTG 59.625 55.000 3.09 0.00 0.00 3.33
56 57 1.453155 GGATTCCAGCATCGTGTTGT 58.547 50.000 0.00 0.00 0.00 3.32
57 58 1.398390 GGATTCCAGCATCGTGTTGTC 59.602 52.381 0.00 0.00 0.00 3.18
58 59 2.350522 GATTCCAGCATCGTGTTGTCT 58.649 47.619 0.00 0.00 0.00 3.41
59 60 1.795768 TTCCAGCATCGTGTTGTCTC 58.204 50.000 0.00 0.00 0.00 3.36
60 61 0.678950 TCCAGCATCGTGTTGTCTCA 59.321 50.000 0.00 0.00 0.00 3.27
61 62 1.276138 TCCAGCATCGTGTTGTCTCAT 59.724 47.619 0.00 0.00 0.00 2.90
62 63 1.662629 CCAGCATCGTGTTGTCTCATC 59.337 52.381 0.00 0.00 0.00 2.92
63 64 2.340337 CAGCATCGTGTTGTCTCATCA 58.660 47.619 0.00 0.00 0.00 3.07
64 65 2.093310 CAGCATCGTGTTGTCTCATCAC 59.907 50.000 0.00 0.00 32.62 3.06
65 66 2.068519 GCATCGTGTTGTCTCATCACA 58.931 47.619 10.23 0.00 34.78 3.58
66 67 2.159787 GCATCGTGTTGTCTCATCACAC 60.160 50.000 10.23 0.00 34.78 3.82
68 69 0.161658 CGTGTTGTCTCATCACACGC 59.838 55.000 10.74 0.00 45.41 5.34
69 70 1.217001 GTGTTGTCTCATCACACGCA 58.783 50.000 6.20 0.00 35.09 5.24
70 71 1.193203 GTGTTGTCTCATCACACGCAG 59.807 52.381 6.20 0.00 35.09 5.18
71 72 0.164647 GTTGTCTCATCACACGCAGC 59.835 55.000 0.00 0.00 0.00 5.25
72 73 0.249826 TTGTCTCATCACACGCAGCA 60.250 50.000 0.00 0.00 0.00 4.41
73 74 0.249826 TGTCTCATCACACGCAGCAA 60.250 50.000 0.00 0.00 0.00 3.91
74 75 0.164647 GTCTCATCACACGCAGCAAC 59.835 55.000 0.00 0.00 0.00 4.17
75 76 0.249826 TCTCATCACACGCAGCAACA 60.250 50.000 0.00 0.00 0.00 3.33
76 77 0.587768 CTCATCACACGCAGCAACAA 59.412 50.000 0.00 0.00 0.00 2.83
77 78 0.307453 TCATCACACGCAGCAACAAC 59.693 50.000 0.00 0.00 0.00 3.32
78 79 0.029167 CATCACACGCAGCAACAACA 59.971 50.000 0.00 0.00 0.00 3.33
79 80 0.737804 ATCACACGCAGCAACAACAA 59.262 45.000 0.00 0.00 0.00 2.83
80 81 0.179176 TCACACGCAGCAACAACAAC 60.179 50.000 0.00 0.00 0.00 3.32
81 82 1.226267 ACACGCAGCAACAACAACG 60.226 52.632 0.00 0.00 0.00 4.10
82 83 2.277884 ACGCAGCAACAACAACGC 60.278 55.556 0.00 0.00 0.00 4.84
83 84 2.024588 CGCAGCAACAACAACGCT 59.975 55.556 0.00 0.00 36.10 5.07
84 85 2.005537 CGCAGCAACAACAACGCTC 61.006 57.895 0.00 0.00 32.48 5.03
85 86 1.356624 GCAGCAACAACAACGCTCT 59.643 52.632 0.00 0.00 32.48 4.09
86 87 0.248621 GCAGCAACAACAACGCTCTT 60.249 50.000 0.00 0.00 32.48 2.85
87 88 1.469917 CAGCAACAACAACGCTCTTG 58.530 50.000 0.00 0.00 32.48 3.02
88 89 0.381801 AGCAACAACAACGCTCTTGG 59.618 50.000 0.00 0.00 0.00 3.61
89 90 0.594796 GCAACAACAACGCTCTTGGG 60.595 55.000 0.00 0.00 0.00 4.12
90 91 0.738389 CAACAACAACGCTCTTGGGT 59.262 50.000 0.00 0.00 41.29 4.51
91 92 0.738389 AACAACAACGCTCTTGGGTG 59.262 50.000 0.00 0.00 39.38 4.61
92 93 0.393808 ACAACAACGCTCTTGGGTGT 60.394 50.000 0.00 0.00 39.38 4.16
93 94 0.029300 CAACAACGCTCTTGGGTGTG 59.971 55.000 0.00 0.00 39.38 3.82
94 95 1.724582 AACAACGCTCTTGGGTGTGC 61.725 55.000 0.00 0.00 39.38 4.57
99 100 3.052082 CTCTTGGGTGTGCGGCAG 61.052 66.667 1.18 0.00 0.00 4.85
100 101 4.641645 TCTTGGGTGTGCGGCAGG 62.642 66.667 1.18 0.00 0.00 4.85
101 102 4.641645 CTTGGGTGTGCGGCAGGA 62.642 66.667 1.18 0.00 0.00 3.86
102 103 4.196778 TTGGGTGTGCGGCAGGAA 62.197 61.111 1.18 0.00 0.00 3.36
103 104 3.723097 TTGGGTGTGCGGCAGGAAA 62.723 57.895 1.18 0.00 0.00 3.13
104 105 2.676471 GGGTGTGCGGCAGGAAAT 60.676 61.111 1.18 0.00 0.00 2.17
105 106 2.700773 GGGTGTGCGGCAGGAAATC 61.701 63.158 1.18 0.00 0.00 2.17
106 107 1.971167 GGTGTGCGGCAGGAAATCA 60.971 57.895 1.18 0.00 0.00 2.57
107 108 1.210155 GTGTGCGGCAGGAAATCAC 59.790 57.895 1.18 2.85 0.00 3.06
108 109 2.324330 TGTGCGGCAGGAAATCACG 61.324 57.895 1.18 0.00 0.00 4.35
110 111 4.520846 GCGGCAGGAAATCACGCG 62.521 66.667 3.53 3.53 40.84 6.01
111 112 3.118454 CGGCAGGAAATCACGCGT 61.118 61.111 5.58 5.58 0.00 6.01
112 113 2.677003 CGGCAGGAAATCACGCGTT 61.677 57.895 10.22 0.00 0.00 4.84
113 114 1.154225 GGCAGGAAATCACGCGTTG 60.154 57.895 10.22 4.40 0.00 4.10
114 115 1.573829 GGCAGGAAATCACGCGTTGA 61.574 55.000 10.22 11.72 39.11 3.18
115 116 0.237235 GCAGGAAATCACGCGTTGAA 59.763 50.000 10.22 0.00 37.92 2.69
116 117 1.334599 GCAGGAAATCACGCGTTGAAA 60.335 47.619 10.22 0.00 37.92 2.69
117 118 2.668279 GCAGGAAATCACGCGTTGAAAT 60.668 45.455 10.22 4.24 37.92 2.17
118 119 3.163594 CAGGAAATCACGCGTTGAAATC 58.836 45.455 10.22 12.57 37.92 2.17
119 120 2.811431 AGGAAATCACGCGTTGAAATCA 59.189 40.909 10.22 0.00 37.92 2.57
120 121 3.120199 AGGAAATCACGCGTTGAAATCAG 60.120 43.478 10.22 0.00 37.92 2.90
121 122 2.247311 AATCACGCGTTGAAATCAGC 57.753 45.000 10.22 0.00 37.92 4.26
122 123 1.155889 ATCACGCGTTGAAATCAGCA 58.844 45.000 10.22 0.00 37.92 4.41
123 124 0.234625 TCACGCGTTGAAATCAGCAC 59.765 50.000 10.22 0.00 0.00 4.40
124 125 1.054348 CACGCGTTGAAATCAGCACG 61.054 55.000 10.22 6.20 38.32 5.34
125 126 2.139811 CGCGTTGAAATCAGCACGC 61.140 57.895 18.00 18.00 46.54 5.34
126 127 1.797537 GCGTTGAAATCAGCACGCC 60.798 57.895 17.44 4.61 45.20 5.68
127 128 1.868997 CGTTGAAATCAGCACGCCT 59.131 52.632 0.00 0.00 0.00 5.52
128 129 0.453282 CGTTGAAATCAGCACGCCTG 60.453 55.000 0.00 0.00 43.17 4.85
134 135 2.821685 TCAGCACGCCTGAGTGTT 59.178 55.556 2.54 0.00 45.44 3.32
135 136 2.941333 CAGCACGCCTGAGTGTTG 59.059 61.111 3.80 3.80 44.64 3.33
136 137 1.889105 CAGCACGCCTGAGTGTTGT 60.889 57.895 9.13 0.00 44.64 3.32
137 138 1.153168 AGCACGCCTGAGTGTTGTT 60.153 52.632 3.05 0.00 43.61 2.83
138 139 1.009675 GCACGCCTGAGTGTTGTTG 60.010 57.895 3.05 0.00 43.61 3.33
139 140 1.009675 CACGCCTGAGTGTTGTTGC 60.010 57.895 0.00 0.00 37.35 4.17
140 141 1.153168 ACGCCTGAGTGTTGTTGCT 60.153 52.632 0.00 0.00 30.76 3.91
141 142 0.748005 ACGCCTGAGTGTTGTTGCTT 60.748 50.000 0.00 0.00 30.76 3.91
142 143 0.040958 CGCCTGAGTGTTGTTGCTTC 60.041 55.000 0.00 0.00 0.00 3.86
143 144 0.040958 GCCTGAGTGTTGTTGCTTCG 60.041 55.000 0.00 0.00 0.00 3.79
144 145 0.588252 CCTGAGTGTTGTTGCTTCGG 59.412 55.000 0.00 0.00 0.00 4.30
145 146 0.040958 CTGAGTGTTGTTGCTTCGGC 60.041 55.000 0.00 0.00 42.19 5.54
146 147 0.463654 TGAGTGTTGTTGCTTCGGCT 60.464 50.000 0.00 0.00 42.37 5.52
147 148 0.040958 GAGTGTTGTTGCTTCGGCTG 60.041 55.000 0.00 0.00 42.37 4.85
148 149 0.748005 AGTGTTGTTGCTTCGGCTGT 60.748 50.000 0.00 0.00 42.37 4.40
149 150 0.941542 GTGTTGTTGCTTCGGCTGTA 59.058 50.000 0.00 0.00 42.37 2.74
150 151 1.069906 GTGTTGTTGCTTCGGCTGTAG 60.070 52.381 0.00 0.00 42.37 2.74
151 152 0.110192 GTTGTTGCTTCGGCTGTAGC 60.110 55.000 16.62 16.62 42.37 3.58
152 153 0.533978 TTGTTGCTTCGGCTGTAGCA 60.534 50.000 21.54 21.54 45.35 3.49
156 157 1.939974 TGCTTCGGCTGTAGCAATAG 58.060 50.000 22.91 0.81 44.27 1.73
157 158 1.480545 TGCTTCGGCTGTAGCAATAGA 59.519 47.619 22.91 0.74 44.27 1.98
158 159 1.861575 GCTTCGGCTGTAGCAATAGAC 59.138 52.381 18.33 0.00 44.36 2.59
159 160 2.120232 CTTCGGCTGTAGCAATAGACG 58.880 52.381 6.18 3.32 46.01 4.18
160 161 0.384309 TCGGCTGTAGCAATAGACGG 59.616 55.000 6.18 0.00 44.84 4.79
161 162 0.384309 CGGCTGTAGCAATAGACGGA 59.616 55.000 6.18 0.00 41.34 4.69
162 163 1.202371 CGGCTGTAGCAATAGACGGAA 60.202 52.381 6.18 0.00 41.34 4.30
163 164 2.474816 GGCTGTAGCAATAGACGGAAG 58.525 52.381 6.18 0.00 44.36 3.46
164 165 1.861575 GCTGTAGCAATAGACGGAAGC 59.138 52.381 0.00 0.00 41.59 3.86
165 166 2.120232 CTGTAGCAATAGACGGAAGCG 58.880 52.381 0.00 0.00 0.00 4.68
166 167 1.202371 TGTAGCAATAGACGGAAGCGG 60.202 52.381 0.00 0.00 0.00 5.52
167 168 0.387929 TAGCAATAGACGGAAGCGGG 59.612 55.000 0.00 0.00 0.00 6.13
168 169 1.143183 GCAATAGACGGAAGCGGGA 59.857 57.895 0.00 0.00 0.00 5.14
169 170 0.461339 GCAATAGACGGAAGCGGGAA 60.461 55.000 0.00 0.00 0.00 3.97
170 171 1.810412 GCAATAGACGGAAGCGGGAAT 60.810 52.381 0.00 0.00 0.00 3.01
171 172 2.135933 CAATAGACGGAAGCGGGAATC 58.864 52.381 0.00 0.00 0.00 2.52
172 173 1.410004 ATAGACGGAAGCGGGAATCA 58.590 50.000 0.00 0.00 0.00 2.57
173 174 0.458669 TAGACGGAAGCGGGAATCAC 59.541 55.000 0.00 0.00 0.00 3.06
174 175 2.125673 ACGGAAGCGGGAATCACG 60.126 61.111 0.00 0.00 0.00 4.35
192 193 2.494059 ACGCAGTGCTTTAATCAGTGT 58.506 42.857 14.33 0.00 42.51 3.55
193 194 2.480419 ACGCAGTGCTTTAATCAGTGTC 59.520 45.455 14.33 0.00 42.51 3.67
194 195 2.472886 CGCAGTGCTTTAATCAGTGTCG 60.473 50.000 14.33 5.99 37.25 4.35
195 196 2.480419 GCAGTGCTTTAATCAGTGTCGT 59.520 45.455 8.18 0.00 37.25 4.34
196 197 3.423645 GCAGTGCTTTAATCAGTGTCGTC 60.424 47.826 8.18 0.00 37.25 4.20
197 198 3.990469 CAGTGCTTTAATCAGTGTCGTCT 59.010 43.478 0.00 0.00 31.91 4.18
198 199 5.161358 CAGTGCTTTAATCAGTGTCGTCTA 58.839 41.667 0.00 0.00 31.91 2.59
199 200 5.061064 CAGTGCTTTAATCAGTGTCGTCTAC 59.939 44.000 0.00 0.00 31.91 2.59
200 201 4.030306 GTGCTTTAATCAGTGTCGTCTACG 59.970 45.833 0.00 0.00 41.45 3.51
201 202 4.164294 GCTTTAATCAGTGTCGTCTACGT 58.836 43.478 2.02 0.00 40.80 3.57
202 203 5.106594 TGCTTTAATCAGTGTCGTCTACGTA 60.107 40.000 2.02 0.00 40.80 3.57
210 211 4.005650 AGTGTCGTCTACGTAGGAATCAA 58.994 43.478 22.01 0.00 40.80 2.57
310 317 0.100503 GATTCCCGCCCGTGAAAATG 59.899 55.000 0.00 0.00 0.00 2.32
311 318 0.322997 ATTCCCGCCCGTGAAAATGA 60.323 50.000 0.00 0.00 0.00 2.57
314 321 1.351707 CCGCCCGTGAAAATGATCG 59.648 57.895 0.00 0.00 0.00 3.69
315 322 1.366111 CCGCCCGTGAAAATGATCGT 61.366 55.000 0.00 0.00 0.00 3.73
323 330 0.026285 GAAAATGATCGTCGCGTGGG 59.974 55.000 5.77 0.00 0.00 4.61
327 334 0.597637 ATGATCGTCGCGTGGGAATC 60.598 55.000 5.77 4.52 0.00 2.52
329 336 1.209275 GATCGTCGCGTGGGAATCAG 61.209 60.000 5.77 0.00 0.00 2.90
350 357 3.257561 CGTCTGCGCGGGAATCAG 61.258 66.667 17.88 6.26 0.00 2.90
351 358 2.125512 GTCTGCGCGGGAATCAGT 60.126 61.111 17.88 0.00 0.00 3.41
352 359 2.125552 TCTGCGCGGGAATCAGTG 60.126 61.111 17.88 0.00 0.00 3.66
353 360 3.869272 CTGCGCGGGAATCAGTGC 61.869 66.667 8.83 6.56 43.46 4.40
359 366 3.578456 GGGAATCAGTGCCGTGTG 58.422 61.111 0.00 0.00 0.00 3.82
360 367 2.690778 GGGAATCAGTGCCGTGTGC 61.691 63.158 0.00 0.00 41.77 4.57
370 377 1.082104 GCCGTGTGCAAACTGTAGC 60.082 57.895 5.28 0.00 40.77 3.58
371 378 1.204062 CCGTGTGCAAACTGTAGCG 59.796 57.895 5.28 0.00 0.00 4.26
372 379 1.438710 CGTGTGCAAACTGTAGCGC 60.439 57.895 5.28 0.00 41.40 5.92
373 380 1.438710 GTGTGCAAACTGTAGCGCG 60.439 57.895 0.00 0.00 43.81 6.86
374 381 1.885388 TGTGCAAACTGTAGCGCGT 60.885 52.632 8.43 0.00 43.81 6.01
375 382 1.438710 GTGCAAACTGTAGCGCGTG 60.439 57.895 8.43 0.00 0.00 5.34
376 383 2.499732 GCAAACTGTAGCGCGTGC 60.500 61.111 14.39 14.39 43.24 5.34
377 384 2.935191 CAAACTGTAGCGCGTGCA 59.065 55.556 24.79 6.35 46.23 4.57
378 385 1.154599 CAAACTGTAGCGCGTGCAG 60.155 57.895 24.79 21.17 46.23 4.41
381 388 3.680525 CTGTAGCGCGTGCAGTAG 58.319 61.111 24.79 13.35 46.23 2.57
382 389 2.506217 TGTAGCGCGTGCAGTAGC 60.506 61.111 24.79 8.37 46.23 3.58
394 401 2.003196 GCAGTAGCAACAGAGGAGTC 57.997 55.000 0.00 0.00 41.58 3.36
395 402 1.734047 GCAGTAGCAACAGAGGAGTCG 60.734 57.143 0.00 0.00 41.58 4.18
396 403 0.528470 AGTAGCAACAGAGGAGTCGC 59.472 55.000 0.00 0.00 0.00 5.19
397 404 0.528470 GTAGCAACAGAGGAGTCGCT 59.472 55.000 0.00 0.00 0.00 4.93
398 405 1.067495 GTAGCAACAGAGGAGTCGCTT 60.067 52.381 0.00 0.00 0.00 4.68
399 406 0.320247 AGCAACAGAGGAGTCGCTTG 60.320 55.000 0.00 0.00 0.00 4.01
400 407 1.905922 GCAACAGAGGAGTCGCTTGC 61.906 60.000 0.00 0.00 0.00 4.01
401 408 0.320247 CAACAGAGGAGTCGCTTGCT 60.320 55.000 0.00 0.00 0.00 3.91
402 409 0.320247 AACAGAGGAGTCGCTTGCTG 60.320 55.000 0.00 0.00 0.00 4.41
403 410 1.291588 CAGAGGAGTCGCTTGCTGT 59.708 57.895 0.00 0.00 0.00 4.40
404 411 1.013005 CAGAGGAGTCGCTTGCTGTG 61.013 60.000 0.00 0.00 0.00 3.66
405 412 1.739562 GAGGAGTCGCTTGCTGTGG 60.740 63.158 0.00 0.00 0.00 4.17
406 413 2.031163 GGAGTCGCTTGCTGTGGT 59.969 61.111 0.00 0.00 0.00 4.16
407 414 2.320587 GGAGTCGCTTGCTGTGGTG 61.321 63.158 0.00 0.00 0.00 4.17
408 415 2.281070 AGTCGCTTGCTGTGGTGG 60.281 61.111 0.00 0.00 0.00 4.61
409 416 4.030452 GTCGCTTGCTGTGGTGGC 62.030 66.667 0.00 0.00 0.00 5.01
458 465 3.972227 CAAGACTTGCCGGTCTGG 58.028 61.111 1.90 3.33 44.67 3.86
459 466 1.672356 CAAGACTTGCCGGTCTGGG 60.672 63.158 1.90 2.73 44.67 4.45
460 467 1.841556 AAGACTTGCCGGTCTGGGA 60.842 57.895 1.90 0.00 44.67 4.37
461 468 1.831652 AAGACTTGCCGGTCTGGGAG 61.832 60.000 1.90 0.00 44.67 4.30
462 469 3.959991 GACTTGCCGGTCTGGGAGC 62.960 68.421 1.90 0.00 40.31 4.70
491 498 4.124351 CGTTGGCCGCCTCGTCTA 62.124 66.667 11.61 0.00 0.00 2.59
492 499 2.202756 GTTGGCCGCCTCGTCTAG 60.203 66.667 11.61 0.00 0.00 2.43
493 500 2.678934 TTGGCCGCCTCGTCTAGT 60.679 61.111 11.61 0.00 0.00 2.57
494 501 3.001902 TTGGCCGCCTCGTCTAGTG 62.002 63.158 11.61 0.00 0.00 2.74
495 502 4.208686 GGCCGCCTCGTCTAGTGG 62.209 72.222 0.71 0.00 36.61 4.00
500 507 3.449227 CCTCGTCTAGTGGCGGCA 61.449 66.667 7.97 7.97 0.00 5.69
501 508 2.103143 CTCGTCTAGTGGCGGCAG 59.897 66.667 13.91 0.00 0.00 4.85
502 509 3.417275 CTCGTCTAGTGGCGGCAGG 62.417 68.421 13.91 6.02 0.00 4.85
503 510 4.514577 CGTCTAGTGGCGGCAGGG 62.515 72.222 13.91 5.61 0.00 4.45
504 511 3.391382 GTCTAGTGGCGGCAGGGT 61.391 66.667 13.91 2.26 0.00 4.34
505 512 3.075005 TCTAGTGGCGGCAGGGTC 61.075 66.667 13.91 0.00 0.00 4.46
506 513 4.162690 CTAGTGGCGGCAGGGTCC 62.163 72.222 13.91 0.00 0.00 4.46
532 539 4.430765 CGACCCGTTCCGTCCCAG 62.431 72.222 0.00 0.00 0.00 4.45
533 540 4.754667 GACCCGTTCCGTCCCAGC 62.755 72.222 0.00 0.00 0.00 4.85
537 544 4.351938 CGTTCCGTCCCAGCGTGA 62.352 66.667 0.00 0.00 0.00 4.35
538 545 2.432628 GTTCCGTCCCAGCGTGAG 60.433 66.667 0.00 0.00 0.00 3.51
539 546 3.691342 TTCCGTCCCAGCGTGAGG 61.691 66.667 0.00 0.00 0.00 3.86
550 557 2.809601 CGTGAGGCGCTGTACCAC 60.810 66.667 7.64 7.65 0.00 4.16
551 558 2.657237 GTGAGGCGCTGTACCACT 59.343 61.111 7.64 0.00 0.00 4.00
552 559 1.446272 GTGAGGCGCTGTACCACTC 60.446 63.158 7.64 3.76 0.00 3.51
553 560 2.184579 GAGGCGCTGTACCACTCC 59.815 66.667 7.64 0.00 0.00 3.85
554 561 2.283966 AGGCGCTGTACCACTCCT 60.284 61.111 7.64 0.00 0.00 3.69
555 562 2.125512 GGCGCTGTACCACTCCTG 60.126 66.667 7.64 0.00 0.00 3.86
556 563 2.657237 GCGCTGTACCACTCCTGT 59.343 61.111 0.00 0.00 0.00 4.00
557 564 1.004918 GCGCTGTACCACTCCTGTT 60.005 57.895 0.00 0.00 0.00 3.16
558 565 0.602905 GCGCTGTACCACTCCTGTTT 60.603 55.000 0.00 0.00 0.00 2.83
559 566 1.878953 CGCTGTACCACTCCTGTTTT 58.121 50.000 0.00 0.00 0.00 2.43
560 567 2.868839 GCGCTGTACCACTCCTGTTTTA 60.869 50.000 0.00 0.00 0.00 1.52
561 568 2.735134 CGCTGTACCACTCCTGTTTTAC 59.265 50.000 0.00 0.00 0.00 2.01
562 569 3.072211 GCTGTACCACTCCTGTTTTACC 58.928 50.000 0.00 0.00 0.00 2.85
563 570 3.244457 GCTGTACCACTCCTGTTTTACCT 60.244 47.826 0.00 0.00 0.00 3.08
564 571 4.315803 CTGTACCACTCCTGTTTTACCTG 58.684 47.826 0.00 0.00 0.00 4.00
565 572 2.951229 ACCACTCCTGTTTTACCTGG 57.049 50.000 0.00 0.00 0.00 4.45
566 573 1.423921 ACCACTCCTGTTTTACCTGGG 59.576 52.381 0.00 0.00 0.00 4.45
567 574 1.534729 CACTCCTGTTTTACCTGGGC 58.465 55.000 0.00 0.00 0.00 5.36
568 575 0.036306 ACTCCTGTTTTACCTGGGCG 59.964 55.000 0.00 0.00 0.00 6.13
569 576 0.676782 CTCCTGTTTTACCTGGGCGG 60.677 60.000 0.00 0.00 39.35 6.13
570 577 2.340328 CCTGTTTTACCTGGGCGGC 61.340 63.158 0.00 0.00 35.61 6.53
571 578 2.282603 TGTTTTACCTGGGCGGCC 60.283 61.111 23.42 23.42 35.61 6.13
572 579 3.436924 GTTTTACCTGGGCGGCCG 61.437 66.667 24.05 24.05 35.61 6.13
605 612 4.107051 GCAGGTGCCATGTGTCGC 62.107 66.667 0.00 0.00 34.31 5.19
606 613 3.434319 CAGGTGCCATGTGTCGCC 61.434 66.667 0.00 0.00 0.00 5.54
607 614 3.640407 AGGTGCCATGTGTCGCCT 61.640 61.111 6.24 6.24 38.30 5.52
608 615 2.267642 GGTGCCATGTGTCGCCTA 59.732 61.111 0.00 0.00 0.00 3.93
609 616 2.106683 GGTGCCATGTGTCGCCTAC 61.107 63.158 0.00 0.00 0.00 3.18
610 617 2.106683 GTGCCATGTGTCGCCTACC 61.107 63.158 0.00 0.00 0.00 3.18
611 618 2.267642 GCCATGTGTCGCCTACCA 59.732 61.111 0.00 0.00 0.00 3.25
612 619 2.106683 GCCATGTGTCGCCTACCAC 61.107 63.158 0.00 0.00 0.00 4.16
613 620 1.809619 CCATGTGTCGCCTACCACG 60.810 63.158 0.00 0.00 34.28 4.94
614 621 2.125673 ATGTGTCGCCTACCACGC 60.126 61.111 0.00 0.00 34.28 5.34
615 622 3.659089 ATGTGTCGCCTACCACGCC 62.659 63.158 0.00 0.00 34.28 5.68
616 623 4.065281 GTGTCGCCTACCACGCCT 62.065 66.667 0.00 0.00 0.00 5.52
617 624 4.063967 TGTCGCCTACCACGCCTG 62.064 66.667 0.00 0.00 0.00 4.85
638 645 4.410400 CCACGGCTGAGGGGGTTC 62.410 72.222 0.00 0.00 0.00 3.62
639 646 3.322466 CACGGCTGAGGGGGTTCT 61.322 66.667 0.00 0.00 0.00 3.01
640 647 2.529389 ACGGCTGAGGGGGTTCTT 60.529 61.111 0.00 0.00 0.00 2.52
641 648 2.154074 ACGGCTGAGGGGGTTCTTT 61.154 57.895 0.00 0.00 0.00 2.52
642 649 1.074951 CGGCTGAGGGGGTTCTTTT 59.925 57.895 0.00 0.00 0.00 2.27
643 650 0.539669 CGGCTGAGGGGGTTCTTTTT 60.540 55.000 0.00 0.00 0.00 1.94
644 651 1.271707 CGGCTGAGGGGGTTCTTTTTA 60.272 52.381 0.00 0.00 0.00 1.52
645 652 2.620627 CGGCTGAGGGGGTTCTTTTTAT 60.621 50.000 0.00 0.00 0.00 1.40
646 653 3.024547 GGCTGAGGGGGTTCTTTTTATC 58.975 50.000 0.00 0.00 0.00 1.75
647 654 3.563479 GGCTGAGGGGGTTCTTTTTATCA 60.563 47.826 0.00 0.00 0.00 2.15
648 655 4.086457 GCTGAGGGGGTTCTTTTTATCAA 58.914 43.478 0.00 0.00 0.00 2.57
649 656 4.711846 GCTGAGGGGGTTCTTTTTATCAAT 59.288 41.667 0.00 0.00 0.00 2.57
650 657 5.187772 GCTGAGGGGGTTCTTTTTATCAATT 59.812 40.000 0.00 0.00 0.00 2.32
651 658 6.295859 GCTGAGGGGGTTCTTTTTATCAATTT 60.296 38.462 0.00 0.00 0.00 1.82
652 659 7.239763 TGAGGGGGTTCTTTTTATCAATTTC 57.760 36.000 0.00 0.00 0.00 2.17
653 660 6.071616 TGAGGGGGTTCTTTTTATCAATTTCG 60.072 38.462 0.00 0.00 0.00 3.46
654 661 5.778241 AGGGGGTTCTTTTTATCAATTTCGT 59.222 36.000 0.00 0.00 0.00 3.85
655 662 6.071560 AGGGGGTTCTTTTTATCAATTTCGTC 60.072 38.462 0.00 0.00 0.00 4.20
656 663 6.097356 GGGGTTCTTTTTATCAATTTCGTCC 58.903 40.000 0.00 0.00 0.00 4.79
657 664 6.294843 GGGGTTCTTTTTATCAATTTCGTCCA 60.295 38.462 0.00 0.00 0.00 4.02
658 665 6.584942 GGGTTCTTTTTATCAATTTCGTCCAC 59.415 38.462 0.00 0.00 0.00 4.02
659 666 7.142680 GGTTCTTTTTATCAATTTCGTCCACA 58.857 34.615 0.00 0.00 0.00 4.17
660 667 7.326063 GGTTCTTTTTATCAATTTCGTCCACAG 59.674 37.037 0.00 0.00 0.00 3.66
661 668 6.908825 TCTTTTTATCAATTTCGTCCACAGG 58.091 36.000 0.00 0.00 0.00 4.00
662 669 5.637006 TTTTATCAATTTCGTCCACAGGG 57.363 39.130 0.00 0.00 0.00 4.45
663 670 2.128771 ATCAATTTCGTCCACAGGGG 57.871 50.000 0.00 0.00 38.37 4.79
664 671 0.768622 TCAATTTCGTCCACAGGGGT 59.231 50.000 0.00 0.00 38.11 4.95
665 672 1.165270 CAATTTCGTCCACAGGGGTC 58.835 55.000 0.00 0.00 38.11 4.46
666 673 1.064825 AATTTCGTCCACAGGGGTCT 58.935 50.000 0.00 0.00 38.11 3.85
667 674 0.613777 ATTTCGTCCACAGGGGTCTC 59.386 55.000 0.00 0.00 38.11 3.36
668 675 0.471211 TTTCGTCCACAGGGGTCTCT 60.471 55.000 0.00 0.00 38.11 3.10
669 676 0.471211 TTCGTCCACAGGGGTCTCTT 60.471 55.000 0.00 0.00 38.11 2.85
670 677 0.471211 TCGTCCACAGGGGTCTCTTT 60.471 55.000 0.00 0.00 38.11 2.52
671 678 0.396811 CGTCCACAGGGGTCTCTTTT 59.603 55.000 0.00 0.00 38.11 2.27
672 679 1.878102 CGTCCACAGGGGTCTCTTTTG 60.878 57.143 0.00 0.00 38.11 2.44
673 680 1.420138 GTCCACAGGGGTCTCTTTTGA 59.580 52.381 0.00 0.00 38.11 2.69
674 681 1.420138 TCCACAGGGGTCTCTTTTGAC 59.580 52.381 0.00 0.00 38.11 3.18
675 682 1.142870 CCACAGGGGTCTCTTTTGACA 59.857 52.381 0.00 0.00 38.61 3.58
676 683 2.422803 CCACAGGGGTCTCTTTTGACAA 60.423 50.000 0.00 0.00 38.61 3.18
677 684 3.490348 CACAGGGGTCTCTTTTGACAAT 58.510 45.455 0.00 0.00 38.61 2.71
678 685 3.891366 CACAGGGGTCTCTTTTGACAATT 59.109 43.478 0.00 0.00 38.61 2.32
679 686 4.022849 CACAGGGGTCTCTTTTGACAATTC 60.023 45.833 0.00 0.00 38.61 2.17
680 687 3.507622 CAGGGGTCTCTTTTGACAATTCC 59.492 47.826 0.00 0.00 38.61 3.01
681 688 3.140144 AGGGGTCTCTTTTGACAATTCCA 59.860 43.478 0.00 0.00 38.61 3.53
682 689 3.507622 GGGGTCTCTTTTGACAATTCCAG 59.492 47.826 0.00 0.00 38.61 3.86
683 690 4.145052 GGGTCTCTTTTGACAATTCCAGT 58.855 43.478 0.00 0.00 38.61 4.00
684 691 4.022849 GGGTCTCTTTTGACAATTCCAGTG 60.023 45.833 0.00 0.00 38.61 3.66
685 692 4.022849 GGTCTCTTTTGACAATTCCAGTGG 60.023 45.833 1.40 1.40 38.61 4.00
686 693 4.022849 GTCTCTTTTGACAATTCCAGTGGG 60.023 45.833 9.92 0.00 36.97 4.61
687 694 2.627699 TCTTTTGACAATTCCAGTGGGC 59.372 45.455 9.92 0.00 0.00 5.36
688 695 2.079170 TTTGACAATTCCAGTGGGCA 57.921 45.000 9.92 0.00 0.00 5.36
689 696 1.619654 TTGACAATTCCAGTGGGCAG 58.380 50.000 9.92 0.00 0.00 4.85
690 697 0.770499 TGACAATTCCAGTGGGCAGA 59.230 50.000 9.92 0.00 0.00 4.26
691 698 1.144708 TGACAATTCCAGTGGGCAGAA 59.855 47.619 9.92 0.00 0.00 3.02
692 699 1.815003 GACAATTCCAGTGGGCAGAAG 59.185 52.381 9.92 0.00 0.00 2.85
693 700 1.180029 CAATTCCAGTGGGCAGAAGG 58.820 55.000 9.92 0.00 0.00 3.46
694 701 0.779997 AATTCCAGTGGGCAGAAGGT 59.220 50.000 9.92 0.00 0.00 3.50
695 702 0.329596 ATTCCAGTGGGCAGAAGGTC 59.670 55.000 9.92 0.00 0.00 3.85
696 703 0.768221 TTCCAGTGGGCAGAAGGTCT 60.768 55.000 9.92 0.00 0.00 3.85
697 704 1.194781 TCCAGTGGGCAGAAGGTCTC 61.195 60.000 9.92 0.00 0.00 3.36
698 705 1.079543 CAGTGGGCAGAAGGTCTCG 60.080 63.158 0.00 0.00 0.00 4.04
699 706 1.534235 AGTGGGCAGAAGGTCTCGT 60.534 57.895 0.00 0.00 0.00 4.18
700 707 1.122019 AGTGGGCAGAAGGTCTCGTT 61.122 55.000 0.00 0.00 0.00 3.85
701 708 0.670854 GTGGGCAGAAGGTCTCGTTC 60.671 60.000 0.00 0.00 0.00 3.95
702 709 1.446272 GGGCAGAAGGTCTCGTTCG 60.446 63.158 0.00 0.00 34.07 3.95
703 710 1.585006 GGCAGAAGGTCTCGTTCGA 59.415 57.895 0.00 0.00 34.07 3.71
704 711 0.733223 GGCAGAAGGTCTCGTTCGAC 60.733 60.000 0.00 0.00 34.07 4.20
705 712 0.039437 GCAGAAGGTCTCGTTCGACA 60.039 55.000 0.00 0.00 35.63 4.35
706 713 1.602165 GCAGAAGGTCTCGTTCGACAA 60.602 52.381 0.00 0.00 35.63 3.18
707 714 2.739292 CAGAAGGTCTCGTTCGACAAA 58.261 47.619 0.00 0.00 35.63 2.83
708 715 3.120792 CAGAAGGTCTCGTTCGACAAAA 58.879 45.455 0.00 0.00 35.63 2.44
709 716 3.554324 CAGAAGGTCTCGTTCGACAAAAA 59.446 43.478 0.00 0.00 35.63 1.94
726 733 0.598065 AAAAATCCAGCTCACACGCC 59.402 50.000 0.00 0.00 0.00 5.68
727 734 1.244019 AAAATCCAGCTCACACGCCC 61.244 55.000 0.00 0.00 0.00 6.13
728 735 2.129555 AAATCCAGCTCACACGCCCT 62.130 55.000 0.00 0.00 0.00 5.19
729 736 2.809861 AATCCAGCTCACACGCCCTG 62.810 60.000 0.00 0.00 0.00 4.45
730 737 4.320456 CCAGCTCACACGCCCTGT 62.320 66.667 0.00 0.00 0.00 4.00
731 738 2.740055 CAGCTCACACGCCCTGTC 60.740 66.667 0.00 0.00 0.00 3.51
732 739 4.008933 AGCTCACACGCCCTGTCC 62.009 66.667 0.00 0.00 0.00 4.02
733 740 4.008933 GCTCACACGCCCTGTCCT 62.009 66.667 0.00 0.00 0.00 3.85
734 741 2.262915 CTCACACGCCCTGTCCTC 59.737 66.667 0.00 0.00 0.00 3.71
735 742 2.203640 TCACACGCCCTGTCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
736 743 2.047844 CACACGCCCTGTCCTCTG 60.048 66.667 0.00 0.00 0.00 3.35
737 744 4.008933 ACACGCCCTGTCCTCTGC 62.009 66.667 0.00 0.00 0.00 4.26
741 748 4.767255 GCCCTGTCCTCTGCGTGG 62.767 72.222 0.00 0.00 0.00 4.94
742 749 2.997315 CCCTGTCCTCTGCGTGGA 60.997 66.667 0.00 0.00 0.00 4.02
755 762 3.414700 GTGGACGCAGCTTCGGTG 61.415 66.667 11.19 0.00 0.00 4.94
764 771 0.804989 CAGCTTCGGTGCCTTAAAGG 59.195 55.000 0.00 0.00 38.80 3.11
781 788 2.203480 GCACCTGCCTTTGGGTCA 60.203 61.111 0.00 0.00 32.95 4.02
782 789 2.564721 GCACCTGCCTTTGGGTCAC 61.565 63.158 0.00 0.00 32.95 3.67
783 790 1.152777 CACCTGCCTTTGGGTCACA 60.153 57.895 0.00 0.00 32.95 3.58
784 791 1.151450 ACCTGCCTTTGGGTCACAG 59.849 57.895 0.00 0.00 34.45 3.66
785 792 1.352622 ACCTGCCTTTGGGTCACAGA 61.353 55.000 0.00 0.00 34.45 3.41
786 793 0.890996 CCTGCCTTTGGGTCACAGAC 60.891 60.000 0.00 0.00 34.45 3.51
787 794 0.179020 CTGCCTTTGGGTCACAGACA 60.179 55.000 0.00 0.00 33.68 3.41
788 795 0.478072 TGCCTTTGGGTCACAGACAT 59.522 50.000 0.00 0.00 33.68 3.06
789 796 0.883833 GCCTTTGGGTCACAGACATG 59.116 55.000 0.00 0.00 33.68 3.21
790 797 1.819305 GCCTTTGGGTCACAGACATGT 60.819 52.381 0.00 0.00 35.87 3.21
798 805 2.034687 ACAGACATGTGGGCCAGC 59.965 61.111 6.40 2.28 38.57 4.85
799 806 2.753043 CAGACATGTGGGCCAGCC 60.753 66.667 6.40 0.00 0.00 4.85
800 807 3.259314 AGACATGTGGGCCAGCCA 61.259 61.111 6.40 1.84 37.98 4.75
801 808 3.064324 GACATGTGGGCCAGCCAC 61.064 66.667 6.40 4.05 37.98 5.01
802 809 4.684134 ACATGTGGGCCAGCCACC 62.684 66.667 6.40 0.00 37.38 4.61
803 810 4.371417 CATGTGGGCCAGCCACCT 62.371 66.667 6.40 0.00 37.38 4.00
804 811 4.371417 ATGTGGGCCAGCCACCTG 62.371 66.667 6.40 0.00 37.38 4.00
806 813 4.603535 GTGGGCCAGCCACCTGTT 62.604 66.667 6.40 0.00 37.38 3.16
807 814 4.601794 TGGGCCAGCCACCTGTTG 62.602 66.667 11.50 0.00 37.38 3.33
817 824 2.644887 CACCTGTTGGACCCACATG 58.355 57.895 0.00 0.00 37.04 3.21
818 825 0.178992 CACCTGTTGGACCCACATGT 60.179 55.000 0.00 0.00 37.04 3.21
819 826 0.110486 ACCTGTTGGACCCACATGTC 59.890 55.000 0.00 0.00 37.04 3.06
820 827 0.110295 CCTGTTGGACCCACATGTCA 59.890 55.000 0.00 0.00 36.97 3.58
821 828 1.272092 CCTGTTGGACCCACATGTCAT 60.272 52.381 0.00 0.00 36.97 3.06
822 829 2.026356 CCTGTTGGACCCACATGTCATA 60.026 50.000 0.00 0.00 36.97 2.15
823 830 3.273434 CTGTTGGACCCACATGTCATAG 58.727 50.000 0.00 0.00 36.97 2.23
824 831 2.909662 TGTTGGACCCACATGTCATAGA 59.090 45.455 0.00 0.00 36.97 1.98
825 832 3.270877 GTTGGACCCACATGTCATAGAC 58.729 50.000 0.00 0.00 36.97 2.59
826 833 2.545810 TGGACCCACATGTCATAGACA 58.454 47.619 0.00 1.95 46.90 3.41
827 834 2.236146 TGGACCCACATGTCATAGACAC 59.764 50.000 0.00 0.00 45.65 3.67
828 835 2.236146 GGACCCACATGTCATAGACACA 59.764 50.000 0.00 0.00 45.65 3.72
829 836 3.307410 GGACCCACATGTCATAGACACAA 60.307 47.826 0.00 0.00 45.65 3.33
830 837 4.323417 GACCCACATGTCATAGACACAAA 58.677 43.478 0.00 0.00 45.65 2.83
831 838 4.326826 ACCCACATGTCATAGACACAAAG 58.673 43.478 0.00 0.00 45.65 2.77
832 839 3.691118 CCCACATGTCATAGACACAAAGG 59.309 47.826 0.00 3.02 45.65 3.11
833 840 4.326826 CCACATGTCATAGACACAAAGGT 58.673 43.478 0.00 0.00 45.65 3.50
834 841 5.487433 CCACATGTCATAGACACAAAGGTA 58.513 41.667 0.00 0.00 45.65 3.08
835 842 5.582269 CCACATGTCATAGACACAAAGGTAG 59.418 44.000 0.00 0.00 45.65 3.18
836 843 5.582269 CACATGTCATAGACACAAAGGTAGG 59.418 44.000 0.00 0.00 45.65 3.18
837 844 5.248477 ACATGTCATAGACACAAAGGTAGGT 59.752 40.000 1.43 0.00 45.65 3.08
838 845 5.147330 TGTCATAGACACAAAGGTAGGTG 57.853 43.478 0.00 0.00 37.67 4.00
839 846 3.933332 GTCATAGACACAAAGGTAGGTGC 59.067 47.826 0.00 0.00 38.57 5.01
840 847 3.055385 TCATAGACACAAAGGTAGGTGCC 60.055 47.826 0.00 0.00 38.57 5.01
841 848 1.435256 AGACACAAAGGTAGGTGCCT 58.565 50.000 0.00 0.00 41.41 4.75
842 849 8.698451 GTCATAGACACAAAGGTAGGTGCCTT 62.698 46.154 0.00 0.00 40.22 4.35
843 850 9.411999 GTCATAGACACAAAGGTAGGTGCCTTA 62.412 44.444 0.00 0.00 38.91 2.69
855 862 2.179764 TGCCTTAATGCACGGAAGC 58.820 52.632 0.82 0.00 36.04 3.86
862 869 2.434185 TGCACGGAAGCATCGTCC 60.434 61.111 0.00 0.00 40.11 4.79
866 873 2.107141 CGGAAGCATCGTCCCCTC 59.893 66.667 0.00 0.00 0.00 4.30
940 962 2.329399 ACCCTCCTCCTCCTCCTCC 61.329 68.421 0.00 0.00 0.00 4.30
941 963 2.018086 CCCTCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
942 964 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
943 965 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
944 966 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
945 967 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1168 1216 2.265904 ACAGAGCGTGTACGAGCCA 61.266 57.895 8.82 0.00 43.02 4.75
1263 1311 1.640149 TCCCTTGATGGATTCCTTGCA 59.360 47.619 3.95 0.00 38.35 4.08
1266 1314 2.097036 CTTGATGGATTCCTTGCAGCA 58.903 47.619 3.95 0.00 40.55 4.41
1356 1404 4.082523 TGCCGAGAAGAAGCCGGG 62.083 66.667 2.18 0.00 43.17 5.73
1361 1412 1.221840 GAGAAGAAGCCGGGATGCA 59.778 57.895 2.18 0.00 0.00 3.96
1463 1544 0.251121 TTCTTTGGGCGCATCCTCAA 60.251 50.000 10.83 2.41 34.39 3.02
1484 1565 0.538287 GCTGGCCTGAAGACAAACCT 60.538 55.000 14.77 0.00 0.00 3.50
1517 1599 0.251653 ACCGTCCTCAAGTGCCTCTA 60.252 55.000 0.00 0.00 0.00 2.43
1689 1893 0.961019 TGATGCTGCAAGGGTTTGTC 59.039 50.000 6.36 0.00 36.65 3.18
1712 1916 5.428457 TCCCTGATGTGGTGACATATAACTT 59.572 40.000 0.00 0.00 42.81 2.66
1767 2076 3.072330 TGGACAATGCAGAGTTGTTCCTA 59.928 43.478 7.36 0.00 39.72 2.94
1787 2096 1.066430 ACGGCAGATGGTTGATAACGT 60.066 47.619 0.00 0.00 0.00 3.99
1878 2187 4.499183 AGGCGACTAAAATGTTCAGAGAG 58.501 43.478 0.00 0.00 40.61 3.20
1950 2259 0.901580 ACTCCCTTTGCAAGCATGGG 60.902 55.000 20.68 20.68 39.67 4.00
2022 2331 6.460399 GCCATAAGCCTAATATCGTCTCCTAG 60.460 46.154 0.00 0.00 34.35 3.02
2063 2372 1.619827 TGCCAATGAAGGAAGCTTTGG 59.380 47.619 0.00 3.28 41.16 3.28
2117 2426 2.544267 GCGATGGTATTGTAGCCAACTC 59.456 50.000 0.00 0.00 38.38 3.01
2118 2427 3.741388 GCGATGGTATTGTAGCCAACTCT 60.741 47.826 0.00 0.00 38.38 3.24
2119 2428 4.442706 CGATGGTATTGTAGCCAACTCTT 58.557 43.478 0.00 0.00 38.38 2.85
2251 2560 5.367937 ACCTATTCAACTCTGGTATCTGCAT 59.632 40.000 0.00 0.00 0.00 3.96
2602 2914 1.674962 GTGAGATGGAGAAAGCATGCC 59.325 52.381 15.66 0.00 0.00 4.40
2608 2920 1.486310 TGGAGAAAGCATGCCGAGTAT 59.514 47.619 15.66 0.00 0.00 2.12
2762 3077 9.444600 AGTTAAACCTACAACTGTTACATATGG 57.555 33.333 7.80 0.00 33.78 2.74
2767 3082 3.006940 ACAACTGTTACATATGGCACCG 58.993 45.455 7.80 2.42 0.00 4.94
2791 3106 3.016736 CTGGATGGGTTATTTCGTGCTT 58.983 45.455 0.00 0.00 0.00 3.91
2797 3112 3.279434 GGGTTATTTCGTGCTTGGAGAT 58.721 45.455 0.00 0.00 0.00 2.75
2861 3176 7.293073 AGTGGAATAATGGTGAGCATTTCTAT 58.707 34.615 15.51 0.22 0.00 1.98
2934 3249 4.084328 GCGATCGTCCTATTCCAGAAATTG 60.084 45.833 17.81 0.00 0.00 2.32
2935 3250 5.050490 CGATCGTCCTATTCCAGAAATTGT 58.950 41.667 7.03 0.00 0.00 2.71
2980 3295 8.562052 TCAATATCACAACACTCAATATCATGC 58.438 33.333 0.00 0.00 0.00 4.06
3012 3327 7.120432 GCATTCTACAAGGTTCAAAGAAGAGAT 59.880 37.037 0.00 0.00 30.30 2.75
3020 3335 6.660887 GGTTCAAAGAAGAGATGAAGCTAG 57.339 41.667 9.05 0.00 44.16 3.42
3021 3336 6.169800 GGTTCAAAGAAGAGATGAAGCTAGT 58.830 40.000 9.05 0.00 44.16 2.57
3022 3337 6.091986 GGTTCAAAGAAGAGATGAAGCTAGTG 59.908 42.308 9.05 0.00 44.16 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.141053 AGGTGAGTTCTGGCTCGTTTT 59.859 47.619 0.00 0.00 38.28 2.43
6 7 0.759346 AGGTGAGTTCTGGCTCGTTT 59.241 50.000 0.00 0.00 38.28 3.60
7 8 1.272769 GTAGGTGAGTTCTGGCTCGTT 59.727 52.381 0.00 0.00 38.28 3.85
8 9 0.889306 GTAGGTGAGTTCTGGCTCGT 59.111 55.000 0.00 0.00 38.28 4.18
9 10 0.173708 GGTAGGTGAGTTCTGGCTCG 59.826 60.000 0.00 0.00 38.28 5.03
10 11 0.173708 CGGTAGGTGAGTTCTGGCTC 59.826 60.000 0.00 0.00 36.12 4.70
11 12 1.889530 GCGGTAGGTGAGTTCTGGCT 61.890 60.000 0.00 0.00 0.00 4.75
12 13 1.448013 GCGGTAGGTGAGTTCTGGC 60.448 63.158 0.00 0.00 0.00 4.85
13 14 1.153823 CGCGGTAGGTGAGTTCTGG 60.154 63.158 0.00 0.00 0.00 3.86
14 15 1.153823 CCGCGGTAGGTGAGTTCTG 60.154 63.158 19.50 0.00 0.00 3.02
15 16 3.003113 GCCGCGGTAGGTGAGTTCT 62.003 63.158 28.70 0.00 0.00 3.01
16 17 2.508663 GCCGCGGTAGGTGAGTTC 60.509 66.667 28.70 0.93 0.00 3.01
17 18 4.078516 GGCCGCGGTAGGTGAGTT 62.079 66.667 28.70 0.00 0.00 3.01
19 20 4.208686 GAGGCCGCGGTAGGTGAG 62.209 72.222 28.70 0.00 0.00 3.51
30 31 3.466791 ATGCTGGAATCCGAGGCCG 62.467 63.158 0.00 0.00 0.00 6.13
31 32 1.599240 GATGCTGGAATCCGAGGCC 60.599 63.158 0.00 0.00 0.00 5.19
32 33 1.958205 CGATGCTGGAATCCGAGGC 60.958 63.158 0.00 0.00 0.00 4.70
33 34 0.877649 CACGATGCTGGAATCCGAGG 60.878 60.000 0.00 0.00 0.00 4.63
34 35 0.179100 ACACGATGCTGGAATCCGAG 60.179 55.000 0.00 0.00 0.00 4.63
35 36 0.249120 AACACGATGCTGGAATCCGA 59.751 50.000 0.00 0.00 0.00 4.55
36 37 0.374758 CAACACGATGCTGGAATCCG 59.625 55.000 0.00 0.00 0.00 4.18
37 38 1.398390 GACAACACGATGCTGGAATCC 59.602 52.381 0.00 0.00 0.00 3.01
38 39 2.349886 GAGACAACACGATGCTGGAATC 59.650 50.000 0.00 0.00 0.00 2.52
39 40 2.289631 TGAGACAACACGATGCTGGAAT 60.290 45.455 0.00 0.00 0.00 3.01
40 41 1.069978 TGAGACAACACGATGCTGGAA 59.930 47.619 0.00 0.00 0.00 3.53
41 42 0.678950 TGAGACAACACGATGCTGGA 59.321 50.000 0.00 0.00 0.00 3.86
42 43 1.662629 GATGAGACAACACGATGCTGG 59.337 52.381 0.00 0.00 0.00 4.85
43 44 2.093310 GTGATGAGACAACACGATGCTG 59.907 50.000 0.00 0.00 28.49 4.41
44 45 2.289010 TGTGATGAGACAACACGATGCT 60.289 45.455 0.00 0.00 39.47 3.79
45 46 2.068519 TGTGATGAGACAACACGATGC 58.931 47.619 0.00 0.00 39.47 3.91
46 47 3.712162 GTGTGATGAGACAACACGATG 57.288 47.619 0.00 0.00 39.47 3.84
50 51 1.193203 CTGCGTGTGATGAGACAACAC 59.807 52.381 0.00 0.00 37.60 3.32
51 52 1.501169 CTGCGTGTGATGAGACAACA 58.499 50.000 0.00 0.00 0.00 3.33
52 53 0.164647 GCTGCGTGTGATGAGACAAC 59.835 55.000 0.00 0.00 0.00 3.32
53 54 0.249826 TGCTGCGTGTGATGAGACAA 60.250 50.000 0.00 0.00 0.00 3.18
54 55 0.249826 TTGCTGCGTGTGATGAGACA 60.250 50.000 0.00 0.00 0.00 3.41
55 56 0.164647 GTTGCTGCGTGTGATGAGAC 59.835 55.000 0.00 0.00 0.00 3.36
56 57 0.249826 TGTTGCTGCGTGTGATGAGA 60.250 50.000 0.00 0.00 0.00 3.27
57 58 0.587768 TTGTTGCTGCGTGTGATGAG 59.412 50.000 0.00 0.00 0.00 2.90
58 59 0.307453 GTTGTTGCTGCGTGTGATGA 59.693 50.000 0.00 0.00 0.00 2.92
59 60 0.029167 TGTTGTTGCTGCGTGTGATG 59.971 50.000 0.00 0.00 0.00 3.07
60 61 0.737804 TTGTTGTTGCTGCGTGTGAT 59.262 45.000 0.00 0.00 0.00 3.06
61 62 0.179176 GTTGTTGTTGCTGCGTGTGA 60.179 50.000 0.00 0.00 0.00 3.58
62 63 1.462871 CGTTGTTGTTGCTGCGTGTG 61.463 55.000 0.00 0.00 0.00 3.82
63 64 1.226267 CGTTGTTGTTGCTGCGTGT 60.226 52.632 0.00 0.00 0.00 4.49
64 65 2.567151 GCGTTGTTGTTGCTGCGTG 61.567 57.895 0.00 0.00 0.00 5.34
65 66 2.277884 GCGTTGTTGTTGCTGCGT 60.278 55.556 0.00 0.00 0.00 5.24
66 67 2.005537 GAGCGTTGTTGTTGCTGCG 61.006 57.895 0.00 0.00 39.49 5.18
67 68 0.248621 AAGAGCGTTGTTGTTGCTGC 60.249 50.000 0.00 0.00 39.49 5.25
68 69 1.469917 CAAGAGCGTTGTTGTTGCTG 58.530 50.000 0.72 0.00 39.49 4.41
69 70 0.381801 CCAAGAGCGTTGTTGTTGCT 59.618 50.000 8.29 0.00 42.73 3.91
70 71 0.594796 CCCAAGAGCGTTGTTGTTGC 60.595 55.000 8.29 0.00 0.00 4.17
71 72 0.738389 ACCCAAGAGCGTTGTTGTTG 59.262 50.000 8.29 2.04 0.00 3.33
72 73 0.738389 CACCCAAGAGCGTTGTTGTT 59.262 50.000 8.29 0.00 0.00 2.83
73 74 0.393808 ACACCCAAGAGCGTTGTTGT 60.394 50.000 8.29 0.00 0.00 3.32
74 75 0.029300 CACACCCAAGAGCGTTGTTG 59.971 55.000 1.94 1.94 0.00 3.33
75 76 1.724582 GCACACCCAAGAGCGTTGTT 61.725 55.000 1.79 0.00 0.00 2.83
76 77 2.186826 GCACACCCAAGAGCGTTGT 61.187 57.895 1.79 0.00 0.00 3.32
77 78 2.639286 GCACACCCAAGAGCGTTG 59.361 61.111 0.00 0.00 0.00 4.10
78 79 2.972505 CGCACACCCAAGAGCGTT 60.973 61.111 0.00 0.00 44.67 4.84
82 83 3.052082 CTGCCGCACACCCAAGAG 61.052 66.667 0.00 0.00 0.00 2.85
83 84 4.641645 CCTGCCGCACACCCAAGA 62.642 66.667 0.00 0.00 0.00 3.02
84 85 4.641645 TCCTGCCGCACACCCAAG 62.642 66.667 0.00 0.00 0.00 3.61
85 86 2.992817 ATTTCCTGCCGCACACCCAA 62.993 55.000 0.00 0.00 0.00 4.12
86 87 3.505790 ATTTCCTGCCGCACACCCA 62.506 57.895 0.00 0.00 0.00 4.51
87 88 2.676471 ATTTCCTGCCGCACACCC 60.676 61.111 0.00 0.00 0.00 4.61
88 89 1.971167 TGATTTCCTGCCGCACACC 60.971 57.895 0.00 0.00 0.00 4.16
89 90 1.210155 GTGATTTCCTGCCGCACAC 59.790 57.895 0.00 0.00 0.00 3.82
90 91 2.324330 CGTGATTTCCTGCCGCACA 61.324 57.895 0.00 0.00 0.00 4.57
91 92 2.480555 CGTGATTTCCTGCCGCAC 59.519 61.111 0.00 0.00 0.00 5.34
92 93 3.430862 GCGTGATTTCCTGCCGCA 61.431 61.111 0.00 0.00 43.53 5.69
93 94 4.520846 CGCGTGATTTCCTGCCGC 62.521 66.667 0.00 0.00 40.87 6.53
94 95 2.677003 AACGCGTGATTTCCTGCCG 61.677 57.895 14.98 0.00 0.00 5.69
95 96 1.154225 CAACGCGTGATTTCCTGCC 60.154 57.895 14.98 0.00 0.00 4.85
96 97 0.237235 TTCAACGCGTGATTTCCTGC 59.763 50.000 14.98 0.00 35.70 4.85
97 98 2.679355 TTTCAACGCGTGATTTCCTG 57.321 45.000 14.98 5.32 35.70 3.86
98 99 2.811431 TGATTTCAACGCGTGATTTCCT 59.189 40.909 14.98 0.00 35.70 3.36
99 100 3.163594 CTGATTTCAACGCGTGATTTCC 58.836 45.455 14.98 1.89 35.70 3.13
100 101 2.589841 GCTGATTTCAACGCGTGATTTC 59.410 45.455 14.98 12.22 35.70 2.17
101 102 2.031245 TGCTGATTTCAACGCGTGATTT 60.031 40.909 14.98 0.00 35.70 2.17
102 103 1.535028 TGCTGATTTCAACGCGTGATT 59.465 42.857 14.98 0.00 35.70 2.57
103 104 1.135972 GTGCTGATTTCAACGCGTGAT 60.136 47.619 14.98 4.79 35.70 3.06
104 105 0.234625 GTGCTGATTTCAACGCGTGA 59.765 50.000 14.98 10.15 0.00 4.35
105 106 1.054348 CGTGCTGATTTCAACGCGTG 61.054 55.000 14.98 7.52 39.99 5.34
106 107 1.204062 CGTGCTGATTTCAACGCGT 59.796 52.632 5.58 5.58 39.99 6.01
107 108 2.139811 GCGTGCTGATTTCAACGCG 61.140 57.895 3.53 3.53 45.37 6.01
108 109 1.797537 GGCGTGCTGATTTCAACGC 60.798 57.895 17.20 17.20 44.51 4.84
109 110 0.453282 CAGGCGTGCTGATTTCAACG 60.453 55.000 0.00 1.43 0.00 4.10
110 111 0.874390 TCAGGCGTGCTGATTTCAAC 59.126 50.000 0.35 0.00 0.00 3.18
111 112 1.159285 CTCAGGCGTGCTGATTTCAA 58.841 50.000 0.35 0.00 0.00 2.69
112 113 0.035317 ACTCAGGCGTGCTGATTTCA 59.965 50.000 0.35 0.00 0.00 2.69
113 114 0.445436 CACTCAGGCGTGCTGATTTC 59.555 55.000 0.35 0.00 0.00 2.17
114 115 0.250467 ACACTCAGGCGTGCTGATTT 60.250 50.000 0.35 0.00 38.45 2.17
115 116 0.250467 AACACTCAGGCGTGCTGATT 60.250 50.000 0.35 0.00 38.45 2.57
116 117 0.952497 CAACACTCAGGCGTGCTGAT 60.952 55.000 0.35 0.00 38.45 2.90
117 118 1.595109 CAACACTCAGGCGTGCTGA 60.595 57.895 0.35 0.00 38.45 4.26
118 119 1.439353 AACAACACTCAGGCGTGCTG 61.439 55.000 0.35 2.11 38.45 4.41
119 120 1.153168 AACAACACTCAGGCGTGCT 60.153 52.632 0.35 0.00 38.45 4.40
120 121 1.009675 CAACAACACTCAGGCGTGC 60.010 57.895 0.35 0.00 38.45 5.34
121 122 1.009675 GCAACAACACTCAGGCGTG 60.010 57.895 0.00 0.00 40.67 5.34
122 123 0.748005 AAGCAACAACACTCAGGCGT 60.748 50.000 0.00 0.00 0.00 5.68
123 124 0.040958 GAAGCAACAACACTCAGGCG 60.041 55.000 0.00 0.00 0.00 5.52
124 125 0.040958 CGAAGCAACAACACTCAGGC 60.041 55.000 0.00 0.00 0.00 4.85
125 126 0.588252 CCGAAGCAACAACACTCAGG 59.412 55.000 0.00 0.00 0.00 3.86
126 127 0.040958 GCCGAAGCAACAACACTCAG 60.041 55.000 0.00 0.00 39.53 3.35
127 128 0.463654 AGCCGAAGCAACAACACTCA 60.464 50.000 0.00 0.00 43.56 3.41
128 129 0.040958 CAGCCGAAGCAACAACACTC 60.041 55.000 0.00 0.00 43.56 3.51
129 130 0.748005 ACAGCCGAAGCAACAACACT 60.748 50.000 0.00 0.00 43.56 3.55
130 131 0.941542 TACAGCCGAAGCAACAACAC 59.058 50.000 0.00 0.00 43.56 3.32
131 132 1.225855 CTACAGCCGAAGCAACAACA 58.774 50.000 0.00 0.00 43.56 3.33
132 133 0.110192 GCTACAGCCGAAGCAACAAC 60.110 55.000 0.00 0.00 43.56 3.32
133 134 0.533978 TGCTACAGCCGAAGCAACAA 60.534 50.000 2.26 0.00 45.36 2.83
134 135 1.070615 TGCTACAGCCGAAGCAACA 59.929 52.632 2.26 0.00 45.36 3.33
135 136 3.966215 TGCTACAGCCGAAGCAAC 58.034 55.556 2.26 0.00 45.36 4.17
137 138 1.480545 TCTATTGCTACAGCCGAAGCA 59.519 47.619 0.00 0.66 46.59 3.91
138 139 1.861575 GTCTATTGCTACAGCCGAAGC 59.138 52.381 0.00 0.00 41.18 3.86
139 140 2.120232 CGTCTATTGCTACAGCCGAAG 58.880 52.381 0.00 0.00 41.18 3.79
140 141 1.202371 CCGTCTATTGCTACAGCCGAA 60.202 52.381 0.00 0.00 41.18 4.30
141 142 0.384309 CCGTCTATTGCTACAGCCGA 59.616 55.000 0.00 0.00 41.18 5.54
142 143 0.384309 TCCGTCTATTGCTACAGCCG 59.616 55.000 0.00 0.00 41.18 5.52
143 144 2.474816 CTTCCGTCTATTGCTACAGCC 58.525 52.381 0.00 0.00 41.18 4.85
144 145 1.861575 GCTTCCGTCTATTGCTACAGC 59.138 52.381 0.00 0.00 42.50 4.40
145 146 2.120232 CGCTTCCGTCTATTGCTACAG 58.880 52.381 0.00 0.00 0.00 2.74
146 147 1.202371 CCGCTTCCGTCTATTGCTACA 60.202 52.381 0.00 0.00 0.00 2.74
147 148 1.488527 CCGCTTCCGTCTATTGCTAC 58.511 55.000 0.00 0.00 0.00 3.58
148 149 0.387929 CCCGCTTCCGTCTATTGCTA 59.612 55.000 0.00 0.00 0.00 3.49
149 150 1.144057 CCCGCTTCCGTCTATTGCT 59.856 57.895 0.00 0.00 0.00 3.91
150 151 0.461339 TTCCCGCTTCCGTCTATTGC 60.461 55.000 0.00 0.00 0.00 3.56
151 152 2.135933 GATTCCCGCTTCCGTCTATTG 58.864 52.381 0.00 0.00 0.00 1.90
152 153 1.760613 TGATTCCCGCTTCCGTCTATT 59.239 47.619 0.00 0.00 0.00 1.73
153 154 1.068741 GTGATTCCCGCTTCCGTCTAT 59.931 52.381 0.00 0.00 0.00 1.98
154 155 0.458669 GTGATTCCCGCTTCCGTCTA 59.541 55.000 0.00 0.00 0.00 2.59
155 156 1.218316 GTGATTCCCGCTTCCGTCT 59.782 57.895 0.00 0.00 0.00 4.18
156 157 2.165301 CGTGATTCCCGCTTCCGTC 61.165 63.158 0.00 0.00 0.00 4.79
157 158 2.125673 CGTGATTCCCGCTTCCGT 60.126 61.111 0.00 0.00 0.00 4.69
164 165 1.577328 AAAGCACTGCGTGATTCCCG 61.577 55.000 11.44 0.00 41.41 5.14
165 166 1.448985 TAAAGCACTGCGTGATTCCC 58.551 50.000 11.44 0.00 41.41 3.97
166 167 3.126858 TGATTAAAGCACTGCGTGATTCC 59.873 43.478 11.44 4.50 41.41 3.01
167 168 4.142816 ACTGATTAAAGCACTGCGTGATTC 60.143 41.667 11.44 2.30 41.41 2.52
168 169 3.753272 ACTGATTAAAGCACTGCGTGATT 59.247 39.130 11.94 9.15 44.22 2.57
169 170 3.125829 CACTGATTAAAGCACTGCGTGAT 59.874 43.478 11.94 3.51 35.23 3.06
170 171 2.480037 CACTGATTAAAGCACTGCGTGA 59.520 45.455 11.94 0.00 35.23 4.35
171 172 2.224079 ACACTGATTAAAGCACTGCGTG 59.776 45.455 4.61 4.61 36.51 5.34
172 173 2.480419 GACACTGATTAAAGCACTGCGT 59.520 45.455 0.00 0.00 0.00 5.24
173 174 2.472886 CGACACTGATTAAAGCACTGCG 60.473 50.000 0.00 0.00 0.00 5.18
174 175 2.480419 ACGACACTGATTAAAGCACTGC 59.520 45.455 0.00 0.00 0.00 4.40
175 176 3.990469 AGACGACACTGATTAAAGCACTG 59.010 43.478 0.00 0.00 0.00 3.66
176 177 4.258702 AGACGACACTGATTAAAGCACT 57.741 40.909 0.00 0.00 0.00 4.40
177 178 4.030306 CGTAGACGACACTGATTAAAGCAC 59.970 45.833 0.00 0.00 43.02 4.40
178 179 4.163552 CGTAGACGACACTGATTAAAGCA 58.836 43.478 0.00 0.00 43.02 3.91
179 180 4.164294 ACGTAGACGACACTGATTAAAGC 58.836 43.478 9.41 0.00 43.02 3.51
180 181 5.964168 CCTACGTAGACGACACTGATTAAAG 59.036 44.000 24.15 0.00 43.02 1.85
181 182 5.643348 TCCTACGTAGACGACACTGATTAAA 59.357 40.000 24.15 0.00 43.02 1.52
182 183 5.178061 TCCTACGTAGACGACACTGATTAA 58.822 41.667 24.15 0.00 43.02 1.40
183 184 4.758688 TCCTACGTAGACGACACTGATTA 58.241 43.478 24.15 0.00 43.02 1.75
184 185 3.603532 TCCTACGTAGACGACACTGATT 58.396 45.455 24.15 0.00 43.02 2.57
185 186 3.257469 TCCTACGTAGACGACACTGAT 57.743 47.619 24.15 0.00 43.02 2.90
186 187 2.749280 TCCTACGTAGACGACACTGA 57.251 50.000 24.15 6.97 43.02 3.41
187 188 3.373130 TGATTCCTACGTAGACGACACTG 59.627 47.826 24.15 4.59 43.02 3.66
188 189 3.603532 TGATTCCTACGTAGACGACACT 58.396 45.455 24.15 1.24 43.02 3.55
189 190 4.346734 TTGATTCCTACGTAGACGACAC 57.653 45.455 24.15 10.07 43.02 3.67
190 191 4.732647 GCATTGATTCCTACGTAGACGACA 60.733 45.833 24.15 14.52 43.02 4.35
191 192 3.729716 GCATTGATTCCTACGTAGACGAC 59.270 47.826 24.15 12.31 43.02 4.34
192 193 3.547413 CGCATTGATTCCTACGTAGACGA 60.547 47.826 24.15 10.64 43.02 4.20
193 194 2.719556 CGCATTGATTCCTACGTAGACG 59.280 50.000 24.15 8.30 46.33 4.18
194 195 3.961182 TCGCATTGATTCCTACGTAGAC 58.039 45.455 24.15 11.99 0.00 2.59
195 196 3.630769 ACTCGCATTGATTCCTACGTAGA 59.369 43.478 24.15 5.23 0.00 2.59
196 197 3.731216 CACTCGCATTGATTCCTACGTAG 59.269 47.826 15.92 15.92 0.00 3.51
197 198 3.702330 CACTCGCATTGATTCCTACGTA 58.298 45.455 0.00 0.00 0.00 3.57
198 199 2.540515 CACTCGCATTGATTCCTACGT 58.459 47.619 0.00 0.00 0.00 3.57
199 200 1.258982 GCACTCGCATTGATTCCTACG 59.741 52.381 0.00 0.00 38.36 3.51
200 201 2.279741 TGCACTCGCATTGATTCCTAC 58.720 47.619 0.00 0.00 45.36 3.18
201 202 2.689553 TGCACTCGCATTGATTCCTA 57.310 45.000 0.00 0.00 45.36 2.94
202 203 3.556817 TGCACTCGCATTGATTCCT 57.443 47.368 0.00 0.00 45.36 3.36
310 317 1.209275 CTGATTCCCACGCGACGATC 61.209 60.000 15.93 9.26 0.00 3.69
311 318 1.226974 CTGATTCCCACGCGACGAT 60.227 57.895 15.93 0.00 0.00 3.73
314 321 3.554692 CGCTGATTCCCACGCGAC 61.555 66.667 15.93 0.00 41.52 5.19
340 347 3.499737 CACGGCACTGATTCCCGC 61.500 66.667 0.00 0.00 45.58 6.13
341 348 2.047274 ACACGGCACTGATTCCCG 60.047 61.111 0.00 0.00 46.97 5.14
342 349 2.690778 GCACACGGCACTGATTCCC 61.691 63.158 0.00 0.00 43.97 3.97
343 350 2.870372 GCACACGGCACTGATTCC 59.130 61.111 0.00 0.00 43.97 3.01
352 359 1.082104 GCTACAGTTTGCACACGGC 60.082 57.895 2.89 1.06 45.13 5.68
353 360 1.204062 CGCTACAGTTTGCACACGG 59.796 57.895 1.36 1.36 0.00 4.94
354 361 1.438710 GCGCTACAGTTTGCACACG 60.439 57.895 0.00 0.00 0.00 4.49
355 362 1.438710 CGCGCTACAGTTTGCACAC 60.439 57.895 5.56 0.00 0.00 3.82
356 363 1.885388 ACGCGCTACAGTTTGCACA 60.885 52.632 5.73 0.00 0.00 4.57
357 364 1.438710 CACGCGCTACAGTTTGCAC 60.439 57.895 5.73 0.00 0.00 4.57
358 365 2.935191 CACGCGCTACAGTTTGCA 59.065 55.556 5.73 0.00 0.00 4.08
359 366 2.499732 GCACGCGCTACAGTTTGC 60.500 61.111 5.73 1.22 34.30 3.68
360 367 1.154599 CTGCACGCGCTACAGTTTG 60.155 57.895 5.73 0.00 39.64 2.93
361 368 0.319211 TACTGCACGCGCTACAGTTT 60.319 50.000 27.13 11.65 41.78 2.66
362 369 0.732880 CTACTGCACGCGCTACAGTT 60.733 55.000 27.13 15.27 41.78 3.16
363 370 1.154016 CTACTGCACGCGCTACAGT 60.154 57.895 25.83 25.83 46.05 3.55
364 371 2.508891 GCTACTGCACGCGCTACAG 61.509 63.158 18.60 18.60 39.64 2.74
365 372 2.506217 GCTACTGCACGCGCTACA 60.506 61.111 5.73 0.02 39.64 2.74
366 373 2.506217 TGCTACTGCACGCGCTAC 60.506 61.111 5.73 0.00 45.31 3.58
375 382 1.734047 CGACTCCTCTGTTGCTACTGC 60.734 57.143 0.00 0.00 40.20 4.40
376 383 1.734047 GCGACTCCTCTGTTGCTACTG 60.734 57.143 0.00 0.00 42.44 2.74
377 384 0.528470 GCGACTCCTCTGTTGCTACT 59.472 55.000 0.00 0.00 42.44 2.57
378 385 3.037485 GCGACTCCTCTGTTGCTAC 57.963 57.895 0.00 0.00 42.44 3.58
381 388 1.905922 GCAAGCGACTCCTCTGTTGC 61.906 60.000 0.00 0.00 45.18 4.17
382 389 0.320247 AGCAAGCGACTCCTCTGTTG 60.320 55.000 0.00 0.00 0.00 3.33
383 390 0.320247 CAGCAAGCGACTCCTCTGTT 60.320 55.000 0.00 0.00 0.00 3.16
384 391 1.291588 CAGCAAGCGACTCCTCTGT 59.708 57.895 0.00 0.00 0.00 3.41
385 392 1.013005 CACAGCAAGCGACTCCTCTG 61.013 60.000 0.00 0.00 0.00 3.35
386 393 1.291588 CACAGCAAGCGACTCCTCT 59.708 57.895 0.00 0.00 0.00 3.69
387 394 1.739562 CCACAGCAAGCGACTCCTC 60.740 63.158 0.00 0.00 0.00 3.71
388 395 2.345244 CCACAGCAAGCGACTCCT 59.655 61.111 0.00 0.00 0.00 3.69
389 396 2.031163 ACCACAGCAAGCGACTCC 59.969 61.111 0.00 0.00 0.00 3.85
390 397 2.320587 CCACCACAGCAAGCGACTC 61.321 63.158 0.00 0.00 0.00 3.36
391 398 2.281070 CCACCACAGCAAGCGACT 60.281 61.111 0.00 0.00 0.00 4.18
392 399 4.030452 GCCACCACAGCAAGCGAC 62.030 66.667 0.00 0.00 0.00 5.19
431 438 3.349006 AAGTCTTGCTGCACGCGG 61.349 61.111 12.47 0.00 43.27 6.46
432 439 2.127496 CAAGTCTTGCTGCACGCG 60.127 61.111 3.53 3.53 43.27 6.01
441 448 1.672356 CCCAGACCGGCAAGTCTTG 60.672 63.158 8.31 8.31 44.83 3.02
442 449 1.831652 CTCCCAGACCGGCAAGTCTT 61.832 60.000 0.00 0.00 44.83 3.01
444 451 2.266055 CTCCCAGACCGGCAAGTC 59.734 66.667 0.00 0.00 37.01 3.01
445 452 4.021925 GCTCCCAGACCGGCAAGT 62.022 66.667 0.00 0.00 0.00 3.16
475 482 2.202756 CTAGACGAGGCGGCCAAC 60.203 66.667 23.09 13.62 34.11 3.77
476 483 2.678934 ACTAGACGAGGCGGCCAA 60.679 61.111 23.09 0.00 34.11 4.52
477 484 3.449227 CACTAGACGAGGCGGCCA 61.449 66.667 23.09 0.00 34.11 5.36
478 485 4.208686 CCACTAGACGAGGCGGCC 62.209 72.222 12.11 12.11 34.11 6.13
479 486 4.874977 GCCACTAGACGAGGCGGC 62.875 72.222 0.00 0.00 39.59 6.53
482 489 4.874977 GCCGCCACTAGACGAGGC 62.875 72.222 11.37 11.37 44.84 4.70
483 490 3.417275 CTGCCGCCACTAGACGAGG 62.417 68.421 0.00 0.00 0.00 4.63
484 491 2.103143 CTGCCGCCACTAGACGAG 59.897 66.667 0.00 0.00 0.00 4.18
485 492 3.449227 CCTGCCGCCACTAGACGA 61.449 66.667 0.00 0.00 0.00 4.20
486 493 4.514577 CCCTGCCGCCACTAGACG 62.515 72.222 0.00 0.00 0.00 4.18
487 494 3.372554 GACCCTGCCGCCACTAGAC 62.373 68.421 0.00 0.00 0.00 2.59
488 495 3.075005 GACCCTGCCGCCACTAGA 61.075 66.667 0.00 0.00 0.00 2.43
489 496 4.162690 GGACCCTGCCGCCACTAG 62.163 72.222 0.00 0.00 0.00 2.57
521 528 2.432628 CTCACGCTGGGACGGAAC 60.433 66.667 0.00 0.00 36.31 3.62
522 529 3.691342 CCTCACGCTGGGACGGAA 61.691 66.667 0.00 0.00 36.31 4.30
533 540 2.809601 GTGGTACAGCGCCTCACG 60.810 66.667 2.29 0.00 41.80 4.35
534 541 1.446272 GAGTGGTACAGCGCCTCAC 60.446 63.158 2.29 5.92 41.80 3.51
535 542 2.646175 GGAGTGGTACAGCGCCTCA 61.646 63.158 2.29 0.00 41.80 3.86
536 543 2.184579 GGAGTGGTACAGCGCCTC 59.815 66.667 2.29 0.63 41.80 4.70
537 544 2.283966 AGGAGTGGTACAGCGCCT 60.284 61.111 2.29 5.59 41.80 5.52
538 545 2.125512 CAGGAGTGGTACAGCGCC 60.126 66.667 2.29 0.00 41.80 6.53
539 546 0.602905 AAACAGGAGTGGTACAGCGC 60.603 55.000 0.00 0.00 41.80 5.92
540 547 1.878953 AAAACAGGAGTGGTACAGCG 58.121 50.000 0.00 0.00 41.80 5.18
541 548 3.072211 GGTAAAACAGGAGTGGTACAGC 58.928 50.000 0.00 0.00 41.80 4.40
542 549 4.315803 CAGGTAAAACAGGAGTGGTACAG 58.684 47.826 0.00 0.00 41.80 2.74
543 550 3.071892 CCAGGTAAAACAGGAGTGGTACA 59.928 47.826 0.00 0.00 0.00 2.90
544 551 3.558533 CCCAGGTAAAACAGGAGTGGTAC 60.559 52.174 0.00 0.00 0.00 3.34
545 552 2.640826 CCCAGGTAAAACAGGAGTGGTA 59.359 50.000 0.00 0.00 0.00 3.25
546 553 1.423921 CCCAGGTAAAACAGGAGTGGT 59.576 52.381 0.00 0.00 0.00 4.16
547 554 1.886655 GCCCAGGTAAAACAGGAGTGG 60.887 57.143 0.00 0.00 0.00 4.00
548 555 1.534729 GCCCAGGTAAAACAGGAGTG 58.465 55.000 0.00 0.00 0.00 3.51
549 556 0.036306 CGCCCAGGTAAAACAGGAGT 59.964 55.000 0.00 0.00 0.00 3.85
550 557 0.676782 CCGCCCAGGTAAAACAGGAG 60.677 60.000 0.00 0.00 34.51 3.69
551 558 1.377229 CCGCCCAGGTAAAACAGGA 59.623 57.895 0.00 0.00 34.51 3.86
552 559 2.340328 GCCGCCCAGGTAAAACAGG 61.340 63.158 0.00 0.00 43.70 4.00
553 560 2.340328 GGCCGCCCAGGTAAAACAG 61.340 63.158 0.00 0.00 43.70 3.16
554 561 2.282603 GGCCGCCCAGGTAAAACA 60.283 61.111 0.00 0.00 43.70 2.83
555 562 3.436924 CGGCCGCCCAGGTAAAAC 61.437 66.667 14.67 0.00 43.70 2.43
588 595 4.107051 GCGACACATGGCACCTGC 62.107 66.667 0.00 0.00 41.14 4.85
589 596 2.520465 TAGGCGACACATGGCACCTG 62.520 60.000 4.45 0.00 0.00 4.00
590 597 2.290287 TAGGCGACACATGGCACCT 61.290 57.895 0.00 0.00 0.00 4.00
591 598 2.106683 GTAGGCGACACATGGCACC 61.107 63.158 0.00 0.00 0.00 5.01
592 599 2.106683 GGTAGGCGACACATGGCAC 61.107 63.158 0.00 0.00 0.00 5.01
593 600 2.267642 GGTAGGCGACACATGGCA 59.732 61.111 0.00 0.00 0.00 4.92
594 601 2.106683 GTGGTAGGCGACACATGGC 61.107 63.158 0.00 0.00 37.54 4.40
595 602 1.809619 CGTGGTAGGCGACACATGG 60.810 63.158 0.00 0.00 37.45 3.66
596 603 2.452813 GCGTGGTAGGCGACACATG 61.453 63.158 0.00 0.00 37.45 3.21
597 604 2.125673 GCGTGGTAGGCGACACAT 60.126 61.111 0.00 0.00 37.45 3.21
598 605 4.367023 GGCGTGGTAGGCGACACA 62.367 66.667 0.00 0.00 37.32 3.72
599 606 4.065281 AGGCGTGGTAGGCGACAC 62.065 66.667 0.00 0.00 40.33 3.67
600 607 4.063967 CAGGCGTGGTAGGCGACA 62.064 66.667 0.00 0.00 40.33 4.35
621 628 4.410400 GAACCCCCTCAGCCGTGG 62.410 72.222 0.00 0.00 0.00 4.94
622 629 2.411765 AAAGAACCCCCTCAGCCGTG 62.412 60.000 0.00 0.00 0.00 4.94
623 630 1.716028 AAAAGAACCCCCTCAGCCGT 61.716 55.000 0.00 0.00 0.00 5.68
624 631 0.539669 AAAAAGAACCCCCTCAGCCG 60.540 55.000 0.00 0.00 0.00 5.52
625 632 2.597578 TAAAAAGAACCCCCTCAGCC 57.402 50.000 0.00 0.00 0.00 4.85
626 633 3.697166 TGATAAAAAGAACCCCCTCAGC 58.303 45.455 0.00 0.00 0.00 4.26
627 634 6.857437 AATTGATAAAAAGAACCCCCTCAG 57.143 37.500 0.00 0.00 0.00 3.35
628 635 6.071616 CGAAATTGATAAAAAGAACCCCCTCA 60.072 38.462 0.00 0.00 0.00 3.86
629 636 6.071560 ACGAAATTGATAAAAAGAACCCCCTC 60.072 38.462 0.00 0.00 0.00 4.30
630 637 5.778241 ACGAAATTGATAAAAAGAACCCCCT 59.222 36.000 0.00 0.00 0.00 4.79
631 638 6.032956 ACGAAATTGATAAAAAGAACCCCC 57.967 37.500 0.00 0.00 0.00 5.40
632 639 6.097356 GGACGAAATTGATAAAAAGAACCCC 58.903 40.000 0.00 0.00 0.00 4.95
633 640 6.584942 GTGGACGAAATTGATAAAAAGAACCC 59.415 38.462 0.00 0.00 0.00 4.11
634 641 7.142680 TGTGGACGAAATTGATAAAAAGAACC 58.857 34.615 0.00 0.00 0.00 3.62
635 642 7.326063 CCTGTGGACGAAATTGATAAAAAGAAC 59.674 37.037 0.00 0.00 0.00 3.01
636 643 7.367285 CCTGTGGACGAAATTGATAAAAAGAA 58.633 34.615 0.00 0.00 0.00 2.52
637 644 6.072175 CCCTGTGGACGAAATTGATAAAAAGA 60.072 38.462 0.00 0.00 0.00 2.52
638 645 6.092748 CCCTGTGGACGAAATTGATAAAAAG 58.907 40.000 0.00 0.00 0.00 2.27
639 646 5.047660 CCCCTGTGGACGAAATTGATAAAAA 60.048 40.000 0.00 0.00 35.39 1.94
640 647 4.461081 CCCCTGTGGACGAAATTGATAAAA 59.539 41.667 0.00 0.00 35.39 1.52
641 648 4.013728 CCCCTGTGGACGAAATTGATAAA 58.986 43.478 0.00 0.00 35.39 1.40
642 649 3.009695 ACCCCTGTGGACGAAATTGATAA 59.990 43.478 0.00 0.00 38.00 1.75
643 650 2.574369 ACCCCTGTGGACGAAATTGATA 59.426 45.455 0.00 0.00 38.00 2.15
644 651 1.354368 ACCCCTGTGGACGAAATTGAT 59.646 47.619 0.00 0.00 38.00 2.57
645 652 0.768622 ACCCCTGTGGACGAAATTGA 59.231 50.000 0.00 0.00 38.00 2.57
646 653 1.165270 GACCCCTGTGGACGAAATTG 58.835 55.000 0.00 0.00 38.00 2.32
647 654 1.003233 GAGACCCCTGTGGACGAAATT 59.997 52.381 0.00 0.00 38.00 1.82
648 655 0.613777 GAGACCCCTGTGGACGAAAT 59.386 55.000 0.00 0.00 38.00 2.17
649 656 0.471211 AGAGACCCCTGTGGACGAAA 60.471 55.000 0.00 0.00 38.00 3.46
650 657 0.471211 AAGAGACCCCTGTGGACGAA 60.471 55.000 0.00 0.00 38.00 3.85
651 658 0.471211 AAAGAGACCCCTGTGGACGA 60.471 55.000 0.00 0.00 38.00 4.20
652 659 0.396811 AAAAGAGACCCCTGTGGACG 59.603 55.000 0.00 0.00 38.00 4.79
653 660 1.420138 TCAAAAGAGACCCCTGTGGAC 59.580 52.381 0.00 0.00 38.00 4.02
654 661 1.420138 GTCAAAAGAGACCCCTGTGGA 59.580 52.381 0.00 0.00 38.00 4.02
655 662 1.142870 TGTCAAAAGAGACCCCTGTGG 59.857 52.381 0.00 0.00 37.73 4.17
656 663 2.638480 TGTCAAAAGAGACCCCTGTG 57.362 50.000 0.00 0.00 37.73 3.66
657 664 3.884037 ATTGTCAAAAGAGACCCCTGT 57.116 42.857 0.00 0.00 37.73 4.00
658 665 3.507622 GGAATTGTCAAAAGAGACCCCTG 59.492 47.826 0.00 0.00 37.73 4.45
659 666 3.140144 TGGAATTGTCAAAAGAGACCCCT 59.860 43.478 0.00 0.00 37.73 4.79
660 667 3.496331 TGGAATTGTCAAAAGAGACCCC 58.504 45.455 0.00 0.00 37.73 4.95
661 668 4.022849 CACTGGAATTGTCAAAAGAGACCC 60.023 45.833 0.00 0.00 37.73 4.46
662 669 4.022849 CCACTGGAATTGTCAAAAGAGACC 60.023 45.833 0.00 0.00 37.73 3.85
663 670 4.022849 CCCACTGGAATTGTCAAAAGAGAC 60.023 45.833 0.00 0.00 38.99 3.36
664 671 4.144297 CCCACTGGAATTGTCAAAAGAGA 58.856 43.478 0.00 0.00 0.00 3.10
665 672 3.305608 GCCCACTGGAATTGTCAAAAGAG 60.306 47.826 0.00 0.00 0.00 2.85
666 673 2.627699 GCCCACTGGAATTGTCAAAAGA 59.372 45.455 0.00 0.00 0.00 2.52
667 674 2.364970 TGCCCACTGGAATTGTCAAAAG 59.635 45.455 0.00 0.00 0.00 2.27
668 675 2.364970 CTGCCCACTGGAATTGTCAAAA 59.635 45.455 0.00 0.00 0.00 2.44
669 676 1.962807 CTGCCCACTGGAATTGTCAAA 59.037 47.619 0.00 0.00 0.00 2.69
670 677 1.144708 TCTGCCCACTGGAATTGTCAA 59.855 47.619 0.00 0.00 0.00 3.18
671 678 0.770499 TCTGCCCACTGGAATTGTCA 59.230 50.000 0.00 0.00 0.00 3.58
672 679 1.815003 CTTCTGCCCACTGGAATTGTC 59.185 52.381 0.00 0.00 0.00 3.18
673 680 1.548582 CCTTCTGCCCACTGGAATTGT 60.549 52.381 0.00 0.00 0.00 2.71
674 681 1.180029 CCTTCTGCCCACTGGAATTG 58.820 55.000 0.00 0.00 0.00 2.32
675 682 0.779997 ACCTTCTGCCCACTGGAATT 59.220 50.000 0.00 0.00 0.00 2.17
676 683 0.329596 GACCTTCTGCCCACTGGAAT 59.670 55.000 0.00 0.00 0.00 3.01
677 684 0.768221 AGACCTTCTGCCCACTGGAA 60.768 55.000 0.00 0.00 0.00 3.53
678 685 1.152030 AGACCTTCTGCCCACTGGA 60.152 57.895 0.00 0.00 0.00 3.86
679 686 1.298014 GAGACCTTCTGCCCACTGG 59.702 63.158 0.00 0.00 0.00 4.00
680 687 1.079543 CGAGACCTTCTGCCCACTG 60.080 63.158 0.00 0.00 0.00 3.66
681 688 1.122019 AACGAGACCTTCTGCCCACT 61.122 55.000 0.00 0.00 0.00 4.00
682 689 0.670854 GAACGAGACCTTCTGCCCAC 60.671 60.000 0.00 0.00 0.00 4.61
683 690 1.671742 GAACGAGACCTTCTGCCCA 59.328 57.895 0.00 0.00 0.00 5.36
684 691 1.446272 CGAACGAGACCTTCTGCCC 60.446 63.158 0.00 0.00 0.00 5.36
685 692 0.733223 GTCGAACGAGACCTTCTGCC 60.733 60.000 0.00 0.00 35.22 4.85
686 693 0.039437 TGTCGAACGAGACCTTCTGC 60.039 55.000 0.00 0.00 40.26 4.26
687 694 2.417339 TTGTCGAACGAGACCTTCTG 57.583 50.000 0.00 0.00 40.26 3.02
688 695 3.447918 TTTTGTCGAACGAGACCTTCT 57.552 42.857 0.00 0.00 40.26 2.85
707 714 0.598065 GGCGTGTGAGCTGGATTTTT 59.402 50.000 0.00 0.00 37.29 1.94
708 715 1.244019 GGGCGTGTGAGCTGGATTTT 61.244 55.000 0.00 0.00 37.29 1.82
709 716 1.675641 GGGCGTGTGAGCTGGATTT 60.676 57.895 0.00 0.00 37.29 2.17
710 717 2.045926 GGGCGTGTGAGCTGGATT 60.046 61.111 0.00 0.00 37.29 3.01
711 718 3.005539 AGGGCGTGTGAGCTGGAT 61.006 61.111 0.00 0.00 37.29 3.41
712 719 4.007644 CAGGGCGTGTGAGCTGGA 62.008 66.667 0.00 0.00 37.29 3.86
713 720 4.320456 ACAGGGCGTGTGAGCTGG 62.320 66.667 12.67 0.00 38.28 4.85
714 721 2.740055 GACAGGGCGTGTGAGCTG 60.740 66.667 18.66 0.00 40.56 4.24
715 722 4.008933 GGACAGGGCGTGTGAGCT 62.009 66.667 18.66 0.00 40.56 4.09
716 723 3.941657 GAGGACAGGGCGTGTGAGC 62.942 68.421 18.66 3.19 40.56 4.26
717 724 2.262915 GAGGACAGGGCGTGTGAG 59.737 66.667 18.66 0.00 40.56 3.51
718 725 2.203640 AGAGGACAGGGCGTGTGA 60.204 61.111 18.66 0.00 40.56 3.58
719 726 2.047844 CAGAGGACAGGGCGTGTG 60.048 66.667 18.66 0.00 40.56 3.82
720 727 4.008933 GCAGAGGACAGGGCGTGT 62.009 66.667 13.36 13.36 44.49 4.49
724 731 4.767255 CCACGCAGAGGACAGGGC 62.767 72.222 0.00 0.00 42.26 5.19
725 732 2.997315 TCCACGCAGAGGACAGGG 60.997 66.667 0.00 0.00 43.77 4.45
738 745 3.414700 CACCGAAGCTGCGTCCAC 61.415 66.667 14.34 0.00 0.00 4.02
742 749 2.725203 TTAAGGCACCGAAGCTGCGT 62.725 55.000 14.34 0.00 35.31 5.24
743 750 1.573829 TTTAAGGCACCGAAGCTGCG 61.574 55.000 7.28 7.28 35.31 5.18
744 751 0.169009 CTTTAAGGCACCGAAGCTGC 59.831 55.000 0.00 0.00 34.17 5.25
745 752 0.804989 CCTTTAAGGCACCGAAGCTG 59.195 55.000 0.00 0.00 34.17 4.24
746 753 3.249687 CCTTTAAGGCACCGAAGCT 57.750 52.632 0.00 0.00 34.17 3.74
764 771 2.203480 TGACCCAAAGGCAGGTGC 60.203 61.111 0.00 0.00 36.17 5.01
765 772 1.152777 TGTGACCCAAAGGCAGGTG 60.153 57.895 0.00 0.00 36.17 4.00
766 773 1.151450 CTGTGACCCAAAGGCAGGT 59.849 57.895 0.00 0.00 39.75 4.00
767 774 0.890996 GTCTGTGACCCAAAGGCAGG 60.891 60.000 0.00 0.00 36.11 4.85
768 775 0.179020 TGTCTGTGACCCAAAGGCAG 60.179 55.000 0.00 0.00 27.24 4.85
769 776 0.478072 ATGTCTGTGACCCAAAGGCA 59.522 50.000 0.00 0.00 37.73 4.75
770 777 0.883833 CATGTCTGTGACCCAAAGGC 59.116 55.000 0.00 0.00 36.11 4.35
771 778 2.276732 ACATGTCTGTGACCCAAAGG 57.723 50.000 0.00 0.00 33.22 3.11
781 788 2.034687 GCTGGCCCACATGTCTGT 59.965 61.111 0.00 0.00 35.44 3.41
782 789 2.753043 GGCTGGCCCACATGTCTG 60.753 66.667 0.00 0.00 0.00 3.51
783 790 3.259314 TGGCTGGCCCACATGTCT 61.259 61.111 9.28 0.00 39.18 3.41
790 797 4.601794 CAACAGGTGGCTGGCCCA 62.602 66.667 9.28 0.00 42.79 5.36
799 806 0.178992 ACATGTGGGTCCAACAGGTG 60.179 55.000 15.96 7.15 0.00 4.00
800 807 0.110486 GACATGTGGGTCCAACAGGT 59.890 55.000 16.64 16.64 0.00 4.00
801 808 0.110295 TGACATGTGGGTCCAACAGG 59.890 55.000 9.59 9.59 36.97 4.00
802 809 2.205022 ATGACATGTGGGTCCAACAG 57.795 50.000 1.15 0.15 36.97 3.16
803 810 2.909662 TCTATGACATGTGGGTCCAACA 59.090 45.455 1.15 0.18 36.97 3.33
804 811 3.270877 GTCTATGACATGTGGGTCCAAC 58.729 50.000 1.15 0.00 36.97 3.77
805 812 2.909662 TGTCTATGACATGTGGGTCCAA 59.090 45.455 1.15 0.00 37.67 3.53
806 813 2.236146 GTGTCTATGACATGTGGGTCCA 59.764 50.000 1.15 0.00 44.63 4.02
807 814 2.236146 TGTGTCTATGACATGTGGGTCC 59.764 50.000 1.15 0.00 44.63 4.46
808 815 3.610040 TGTGTCTATGACATGTGGGTC 57.390 47.619 1.15 0.00 44.63 4.46
809 816 4.326826 CTTTGTGTCTATGACATGTGGGT 58.673 43.478 1.15 0.00 44.63 4.51
810 817 3.691118 CCTTTGTGTCTATGACATGTGGG 59.309 47.826 1.15 2.15 44.63 4.61
811 818 4.326826 ACCTTTGTGTCTATGACATGTGG 58.673 43.478 1.15 0.00 44.63 4.17
812 819 5.582269 CCTACCTTTGTGTCTATGACATGTG 59.418 44.000 1.15 0.00 44.63 3.21
813 820 5.248477 ACCTACCTTTGTGTCTATGACATGT 59.752 40.000 0.00 0.00 44.63 3.21
814 821 5.582269 CACCTACCTTTGTGTCTATGACATG 59.418 44.000 3.65 0.00 44.63 3.21
815 822 5.734720 CACCTACCTTTGTGTCTATGACAT 58.265 41.667 3.65 0.00 44.63 3.06
816 823 4.562757 GCACCTACCTTTGTGTCTATGACA 60.563 45.833 0.00 0.00 40.50 3.58
817 824 3.933332 GCACCTACCTTTGTGTCTATGAC 59.067 47.826 0.00 0.00 34.94 3.06
818 825 3.055385 GGCACCTACCTTTGTGTCTATGA 60.055 47.826 0.00 0.00 34.34 2.15
819 826 3.055094 AGGCACCTACCTTTGTGTCTATG 60.055 47.826 0.00 0.00 45.05 2.23
820 827 3.182152 AGGCACCTACCTTTGTGTCTAT 58.818 45.455 0.00 0.00 45.05 1.98
821 828 2.616524 AGGCACCTACCTTTGTGTCTA 58.383 47.619 0.00 0.00 45.05 2.59
822 829 1.435256 AGGCACCTACCTTTGTGTCT 58.565 50.000 0.00 0.00 42.30 3.41
837 844 0.607762 TGCTTCCGTGCATTAAGGCA 60.608 50.000 11.36 11.36 42.53 4.75
838 845 2.179764 TGCTTCCGTGCATTAAGGC 58.820 52.632 4.88 4.88 38.12 4.35
845 852 2.434185 GGACGATGCTTCCGTGCA 60.434 61.111 11.16 0.00 45.51 4.57
846 853 3.195698 GGGACGATGCTTCCGTGC 61.196 66.667 8.50 8.50 45.48 5.34
847 854 2.511600 GGGGACGATGCTTCCGTG 60.512 66.667 3.59 0.00 40.67 4.94
848 855 2.683933 AGGGGACGATGCTTCCGT 60.684 61.111 0.00 0.00 43.56 4.69
849 856 2.107141 GAGGGGACGATGCTTCCG 59.893 66.667 0.00 0.00 33.43 4.30
850 857 1.144936 CAGAGGGGACGATGCTTCC 59.855 63.158 0.00 0.00 0.00 3.46
851 858 1.522580 GCAGAGGGGACGATGCTTC 60.523 63.158 0.00 0.00 41.60 3.86
852 859 2.586792 GCAGAGGGGACGATGCTT 59.413 61.111 0.00 0.00 41.60 3.91
853 860 3.842923 CGCAGAGGGGACGATGCT 61.843 66.667 0.00 0.00 42.34 3.79
896 904 4.148825 GCGGATGCGGGACACTCT 62.149 66.667 9.20 0.00 0.00 3.24
919 933 1.382009 GGAGGAGGAGGAGGGTGAC 60.382 68.421 0.00 0.00 0.00 3.67
940 962 0.179051 ACGTCGGCTAGGTAGAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
941 963 0.179062 GACGTCGGCTAGGTAGAGGA 60.179 60.000 0.00 0.00 0.00 3.71
942 964 1.165284 GGACGTCGGCTAGGTAGAGG 61.165 65.000 9.92 0.00 0.00 3.69
943 965 1.497223 CGGACGTCGGCTAGGTAGAG 61.497 65.000 9.92 0.00 34.75 2.43
944 966 1.522355 CGGACGTCGGCTAGGTAGA 60.522 63.158 9.92 0.00 34.75 2.59
945 967 3.020627 CGGACGTCGGCTAGGTAG 58.979 66.667 9.92 0.00 34.75 3.18
977 999 0.247460 CGTGATGAAGTGGAGGAGCA 59.753 55.000 0.00 0.00 0.00 4.26
1068 1113 1.324014 AGGAGGAGGAGGATGAGGAA 58.676 55.000 0.00 0.00 0.00 3.36
1074 1119 1.324014 TGGAGAAGGAGGAGGAGGAT 58.676 55.000 0.00 0.00 0.00 3.24
1367 1418 3.645660 TGAAGATGGTGGGCGGCA 61.646 61.111 12.47 0.00 0.00 5.69
1418 1469 2.042831 CCTAGGTCCGGACGACGTT 61.043 63.158 27.68 12.94 42.99 3.99
1484 1565 2.358125 CGGTGTTGGCGGTGATCA 60.358 61.111 0.00 0.00 0.00 2.92
1517 1599 0.515564 GTCGGTATGTTTTGCGCAGT 59.484 50.000 11.31 0.00 0.00 4.40
1689 1893 5.296151 AGTTATATGTCACCACATCAGGG 57.704 43.478 0.00 0.00 42.66 4.45
1712 1916 5.412640 CCTTGCACAATGCTTCAATAATCA 58.587 37.500 2.02 0.00 45.31 2.57
1722 1926 3.376078 CGGGCCTTGCACAATGCT 61.376 61.111 0.84 0.00 45.31 3.79
1767 2076 1.066430 ACGTTATCAACCATCTGCCGT 60.066 47.619 0.00 0.00 0.00 5.68
1787 2096 3.181453 TGTCACTTTATCCGGTGGAACAA 60.181 43.478 0.00 0.00 44.16 2.83
1878 2187 3.567478 ATAAGACCCCTGCTTGTCATC 57.433 47.619 0.00 0.00 33.89 2.92
1902 2211 5.276461 ACGAGCTCCATGTGACAATATTA 57.724 39.130 8.47 0.00 0.00 0.98
1914 2223 1.137872 GAGTCCATGAACGAGCTCCAT 59.862 52.381 8.47 2.94 0.00 3.41
1919 2228 0.250513 AAGGGAGTCCATGAACGAGC 59.749 55.000 12.30 0.00 34.83 5.03
1950 2259 3.360249 TCTGCAGCTTCTTTGCTTTTC 57.640 42.857 9.47 0.00 41.98 2.29
2022 2331 4.457257 GCATACCCATGAAGAAGAATAGCC 59.543 45.833 0.00 0.00 33.67 3.93
2140 2449 6.309357 TCATTCCTCCTTTAGCATATGCATT 58.691 36.000 28.62 12.35 45.16 3.56
2155 2464 3.505480 AGCTTCATCCATCATTCCTCC 57.495 47.619 0.00 0.00 0.00 4.30
2251 2560 2.603075 AGCCTACCCATTCTGCAAAA 57.397 45.000 0.00 0.00 0.00 2.44
2602 2914 4.996758 TGATACCATGGCATCAAATACTCG 59.003 41.667 23.05 0.00 0.00 4.18
2608 2920 2.953648 CAGCTGATACCATGGCATCAAA 59.046 45.455 24.75 6.91 31.04 2.69
2673 2985 7.494625 TCATCGATCCTTCCACTTTTACAATAC 59.505 37.037 0.00 0.00 0.00 1.89
2762 3077 0.538118 TAACCCATCCAGTACGGTGC 59.462 55.000 0.00 0.00 35.57 5.01
2767 3082 3.311596 GCACGAAATAACCCATCCAGTAC 59.688 47.826 0.00 0.00 0.00 2.73
2934 3249 4.609947 TGAACTTCACATTCATTGCACAC 58.390 39.130 0.00 0.00 31.11 3.82
2935 3250 4.915158 TGAACTTCACATTCATTGCACA 57.085 36.364 0.00 0.00 31.11 4.57
2980 3295 8.514594 TCTTTGAACCTTGTAGAATGCATTAAG 58.485 33.333 12.97 11.91 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.