Multiple sequence alignment - TraesCS1D01G068500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G068500 chr1D 100.000 4439 0 0 1 4439 49972250 49976688 0.000000e+00 8198.0
1 TraesCS1D01G068500 chr1D 88.533 2529 281 6 968 3490 50059211 50061736 0.000000e+00 3055.0
2 TraesCS1D01G068500 chr1D 88.324 2441 267 14 996 3424 50022599 50025033 0.000000e+00 2913.0
3 TraesCS1D01G068500 chr1D 83.603 2659 409 23 1033 3672 49617071 49619721 0.000000e+00 2470.0
4 TraesCS1D01G068500 chr1D 88.623 501 28 9 3922 4417 50062093 50062569 2.300000e-162 582.0
5 TraesCS1D01G068500 chr1D 94.118 102 6 0 1 102 431603811 431603710 5.940000e-34 156.0
6 TraesCS1D01G068500 chr1A 88.541 2967 318 11 985 3934 49346763 49349724 0.000000e+00 3576.0
7 TraesCS1D01G068500 chr1A 86.019 2718 351 22 997 3697 49354804 49357509 0.000000e+00 2887.0
8 TraesCS1D01G068500 chr1A 84.475 2731 370 33 967 3671 49293382 49296084 0.000000e+00 2645.0
9 TraesCS1D01G068500 chr1A 83.426 2685 411 25 1010 3672 49245200 49247872 0.000000e+00 2462.0
10 TraesCS1D01G068500 chr1A 77.778 351 56 13 3738 4087 49296087 49296416 3.500000e-46 196.0
11 TraesCS1D01G068500 chr1B 85.093 2623 354 24 1004 3609 70333809 70336411 0.000000e+00 2643.0
12 TraesCS1D01G068500 chr1B 83.983 2566 374 27 979 3515 70169764 70172321 0.000000e+00 2427.0
13 TraesCS1D01G068500 chr1B 88.702 1664 131 23 2458 4099 70497485 70499113 0.000000e+00 1978.0
14 TraesCS1D01G068500 chr1B 88.169 617 45 4 147 739 70491362 70491974 0.000000e+00 710.0
15 TraesCS1D01G068500 chr1B 77.620 353 53 16 3738 4087 70336482 70336811 1.630000e-44 191.0
16 TraesCS1D01G068500 chr4A 88.854 323 29 6 4072 4389 617639735 617639415 1.500000e-104 390.0
17 TraesCS1D01G068500 chr4A 90.698 86 8 0 3727 3812 617639859 617639774 1.010000e-21 115.0
18 TraesCS1D01G068500 chr4A 100.000 37 0 0 3929 3965 617639773 617639737 7.970000e-08 69.4
19 TraesCS1D01G068500 chr6D 99.020 102 1 0 1 102 58223804 58223703 2.730000e-42 183.0
20 TraesCS1D01G068500 chr5D 99.020 102 1 0 1 102 16148760 16148659 2.730000e-42 183.0
21 TraesCS1D01G068500 chr2D 99.020 102 1 0 1 102 195728964 195728863 2.730000e-42 183.0
22 TraesCS1D01G068500 chr2D 96.078 102 4 0 1 102 364828265 364828164 2.750000e-37 167.0
23 TraesCS1D01G068500 chr7A 97.000 100 2 1 3 102 11753033 11753131 2.750000e-37 167.0
24 TraesCS1D01G068500 chr3D 95.146 103 4 1 1 102 419655758 419655860 1.280000e-35 161.0
25 TraesCS1D01G068500 chr3A 94.000 100 5 1 1 100 456704946 456704848 2.770000e-32 150.0
26 TraesCS1D01G068500 chr7B 93.069 101 7 0 2 102 684371563 684371463 9.950000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G068500 chr1D 49972250 49976688 4438 False 8198.0 8198 100.0000 1 4439 1 chr1D.!!$F2 4438
1 TraesCS1D01G068500 chr1D 50022599 50025033 2434 False 2913.0 2913 88.3240 996 3424 1 chr1D.!!$F3 2428
2 TraesCS1D01G068500 chr1D 49617071 49619721 2650 False 2470.0 2470 83.6030 1033 3672 1 chr1D.!!$F1 2639
3 TraesCS1D01G068500 chr1D 50059211 50062569 3358 False 1818.5 3055 88.5780 968 4417 2 chr1D.!!$F4 3449
4 TraesCS1D01G068500 chr1A 49346763 49349724 2961 False 3576.0 3576 88.5410 985 3934 1 chr1A.!!$F2 2949
5 TraesCS1D01G068500 chr1A 49354804 49357509 2705 False 2887.0 2887 86.0190 997 3697 1 chr1A.!!$F3 2700
6 TraesCS1D01G068500 chr1A 49245200 49247872 2672 False 2462.0 2462 83.4260 1010 3672 1 chr1A.!!$F1 2662
7 TraesCS1D01G068500 chr1A 49293382 49296416 3034 False 1420.5 2645 81.1265 967 4087 2 chr1A.!!$F4 3120
8 TraesCS1D01G068500 chr1B 70169764 70172321 2557 False 2427.0 2427 83.9830 979 3515 1 chr1B.!!$F1 2536
9 TraesCS1D01G068500 chr1B 70497485 70499113 1628 False 1978.0 1978 88.7020 2458 4099 1 chr1B.!!$F3 1641
10 TraesCS1D01G068500 chr1B 70333809 70336811 3002 False 1417.0 2643 81.3565 1004 4087 2 chr1B.!!$F4 3083
11 TraesCS1D01G068500 chr1B 70491362 70491974 612 False 710.0 710 88.1690 147 739 1 chr1B.!!$F2 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 453 0.038744 AGGGCATGTATGGGCATAGC 59.961 55.0 0.00 0.0 0.00 2.97 F
627 628 0.038890 TTGGCCACCCAATCGATGAA 59.961 50.0 3.88 0.0 46.01 2.57 F
927 928 0.243095 GCCTCCAGAAGCAAAGCAAG 59.757 55.0 0.00 0.0 0.00 4.01 F
2342 2391 0.763652 AGACTGGCTGATGCTATGGG 59.236 55.0 0.00 0.0 39.59 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2248 2297 0.112412 AGTCCTTGTCCCCGCATTTT 59.888 50.000 0.00 0.00 0.00 1.82 R
2366 2418 0.393820 TGTGTTCGGTTGTACTCCCC 59.606 55.000 0.00 0.00 0.00 4.81 R
2519 2571 2.582636 ACCCTTCCTTCATTGCATAGGT 59.417 45.455 0.00 0.00 0.00 3.08 R
4300 4435 0.801836 GAAATGGGTTCATTGCGGCG 60.802 55.000 0.51 0.51 42.29 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.459489 CGAGCAGAGGAGAAGAAGGG 59.541 60.000 0.00 0.00 0.00 3.95
20 21 0.829990 GAGCAGAGGAGAAGAAGGGG 59.170 60.000 0.00 0.00 0.00 4.79
21 22 1.223211 GCAGAGGAGAAGAAGGGGC 59.777 63.158 0.00 0.00 0.00 5.80
22 23 1.911471 CAGAGGAGAAGAAGGGGCC 59.089 63.158 0.00 0.00 0.00 5.80
23 24 1.307430 AGAGGAGAAGAAGGGGCCC 60.307 63.158 17.12 17.12 0.00 5.80
24 25 2.286502 AGGAGAAGAAGGGGCCCC 60.287 66.667 35.90 35.90 0.00 5.80
25 26 3.798511 GGAGAAGAAGGGGCCCCG 61.799 72.222 35.78 0.00 41.95 5.73
26 27 4.491409 GAGAAGAAGGGGCCCCGC 62.491 72.222 35.78 29.63 41.95 6.13
61 62 2.647297 GGCTTTGCCTGTCAGCAC 59.353 61.111 0.73 0.00 46.69 4.40
62 63 2.647297 GCTTTGCCTGTCAGCACC 59.353 61.111 0.00 0.00 43.97 5.01
63 64 2.195567 GCTTTGCCTGTCAGCACCA 61.196 57.895 0.00 0.00 43.97 4.17
64 65 1.954528 CTTTGCCTGTCAGCACCAG 59.045 57.895 0.00 0.00 43.97 4.00
65 66 2.138656 CTTTGCCTGTCAGCACCAGC 62.139 60.000 0.00 0.00 43.97 4.85
66 67 4.648626 TGCCTGTCAGCACCAGCC 62.649 66.667 0.00 0.00 43.56 4.85
93 94 4.179599 GGGGGAGGAGGGGGAGAG 62.180 77.778 0.00 0.00 0.00 3.20
94 95 4.179599 GGGGAGGAGGGGGAGAGG 62.180 77.778 0.00 0.00 0.00 3.69
95 96 3.369388 GGGAGGAGGGGGAGAGGT 61.369 72.222 0.00 0.00 0.00 3.85
96 97 2.041405 GGAGGAGGGGGAGAGGTG 60.041 72.222 0.00 0.00 0.00 4.00
97 98 2.041405 GAGGAGGGGGAGAGGTGG 60.041 72.222 0.00 0.00 0.00 4.61
98 99 3.700350 AGGAGGGGGAGAGGTGGG 61.700 72.222 0.00 0.00 0.00 4.61
99 100 4.825679 GGAGGGGGAGAGGTGGGG 62.826 77.778 0.00 0.00 0.00 4.96
100 101 3.695825 GAGGGGGAGAGGTGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
101 102 4.026357 AGGGGGAGAGGTGGGGAC 62.026 72.222 0.00 0.00 0.00 4.46
116 117 4.091939 GACCGGCGGCTAGGGTTT 62.092 66.667 28.71 2.71 33.28 3.27
117 118 4.091939 ACCGGCGGCTAGGGTTTC 62.092 66.667 28.71 0.00 0.00 2.78
118 119 4.851179 CCGGCGGCTAGGGTTTCC 62.851 72.222 15.42 0.00 0.00 3.13
119 120 4.851179 CGGCGGCTAGGGTTTCCC 62.851 72.222 7.61 0.00 45.90 3.97
133 134 3.381590 GGGTTTCCCTGTTTGATGATAGC 59.618 47.826 0.00 0.00 41.34 2.97
134 135 3.065371 GGTTTCCCTGTTTGATGATAGCG 59.935 47.826 0.00 0.00 0.00 4.26
135 136 2.620251 TCCCTGTTTGATGATAGCGG 57.380 50.000 0.00 0.00 0.00 5.52
136 137 1.837439 TCCCTGTTTGATGATAGCGGT 59.163 47.619 0.00 0.00 0.00 5.68
137 138 3.035363 TCCCTGTTTGATGATAGCGGTA 58.965 45.455 0.00 0.00 0.00 4.02
138 139 3.452990 TCCCTGTTTGATGATAGCGGTAA 59.547 43.478 0.00 0.00 0.00 2.85
139 140 3.809832 CCCTGTTTGATGATAGCGGTAAG 59.190 47.826 0.00 0.00 0.00 2.34
140 141 4.442706 CCTGTTTGATGATAGCGGTAAGT 58.557 43.478 0.00 0.00 0.00 2.24
141 142 4.876107 CCTGTTTGATGATAGCGGTAAGTT 59.124 41.667 0.00 0.00 0.00 2.66
142 143 5.354234 CCTGTTTGATGATAGCGGTAAGTTT 59.646 40.000 0.00 0.00 0.00 2.66
143 144 6.176975 TGTTTGATGATAGCGGTAAGTTTG 57.823 37.500 0.00 0.00 0.00 2.93
144 145 5.935206 TGTTTGATGATAGCGGTAAGTTTGA 59.065 36.000 0.00 0.00 0.00 2.69
145 146 6.597672 TGTTTGATGATAGCGGTAAGTTTGAT 59.402 34.615 0.00 0.00 0.00 2.57
146 147 6.603237 TTGATGATAGCGGTAAGTTTGATG 57.397 37.500 0.00 0.00 0.00 3.07
147 148 5.912892 TGATGATAGCGGTAAGTTTGATGA 58.087 37.500 0.00 0.00 0.00 2.92
148 149 6.524734 TGATGATAGCGGTAAGTTTGATGAT 58.475 36.000 0.00 0.00 0.00 2.45
178 179 0.469705 TGTTGAAGGTGCCAAGCCAT 60.470 50.000 0.00 0.00 0.00 4.40
187 188 4.222589 CCAAGCCATACGCGTGCG 62.223 66.667 24.59 13.39 44.65 5.34
217 218 2.159627 CGGATTTTGGAACTCCTCAACG 59.840 50.000 0.00 0.00 36.82 4.10
242 243 1.970917 GCTCGACGATTGGTGCCTTG 61.971 60.000 0.00 0.00 0.00 3.61
254 255 2.746277 GCCTTGCACCCTGGTACG 60.746 66.667 0.00 0.00 0.00 3.67
311 312 3.181454 CGGAAGCAACTATAACATCCCCT 60.181 47.826 0.00 0.00 0.00 4.79
312 313 4.137543 GGAAGCAACTATAACATCCCCTG 58.862 47.826 0.00 0.00 0.00 4.45
313 314 3.214696 AGCAACTATAACATCCCCTGC 57.785 47.619 0.00 0.00 0.00 4.85
314 315 1.873591 GCAACTATAACATCCCCTGCG 59.126 52.381 0.00 0.00 0.00 5.18
315 316 2.484770 GCAACTATAACATCCCCTGCGA 60.485 50.000 0.00 0.00 0.00 5.10
316 317 3.131396 CAACTATAACATCCCCTGCGAC 58.869 50.000 0.00 0.00 0.00 5.19
317 318 1.340248 ACTATAACATCCCCTGCGACG 59.660 52.381 0.00 0.00 0.00 5.12
318 319 1.611977 CTATAACATCCCCTGCGACGA 59.388 52.381 0.00 0.00 0.00 4.20
319 320 0.389391 ATAACATCCCCTGCGACGAG 59.611 55.000 0.00 0.00 0.00 4.18
320 321 0.681887 TAACATCCCCTGCGACGAGA 60.682 55.000 0.00 0.00 0.00 4.04
321 322 1.541310 AACATCCCCTGCGACGAGAA 61.541 55.000 0.00 0.00 0.00 2.87
322 323 1.227089 CATCCCCTGCGACGAGAAG 60.227 63.158 0.00 0.00 0.00 2.85
323 324 2.427245 ATCCCCTGCGACGAGAAGG 61.427 63.158 0.00 1.56 46.01 3.46
327 328 2.881389 CTGCGACGAGAAGGAGCT 59.119 61.111 0.00 0.00 0.00 4.09
328 329 1.226547 CTGCGACGAGAAGGAGCTC 60.227 63.158 4.71 4.71 0.00 4.09
329 330 1.927608 CTGCGACGAGAAGGAGCTCA 61.928 60.000 17.19 0.00 34.56 4.26
330 331 1.226547 GCGACGAGAAGGAGCTCAG 60.227 63.158 17.19 1.73 34.56 3.35
331 332 1.431440 CGACGAGAAGGAGCTCAGG 59.569 63.158 17.19 0.00 34.56 3.86
332 333 1.813192 GACGAGAAGGAGCTCAGGG 59.187 63.158 17.19 0.55 34.56 4.45
333 334 1.671901 GACGAGAAGGAGCTCAGGGG 61.672 65.000 17.19 1.66 34.56 4.79
334 335 2.907236 GAGAAGGAGCTCAGGGGC 59.093 66.667 17.19 0.00 35.01 5.80
335 336 3.080121 AGAAGGAGCTCAGGGGCG 61.080 66.667 17.19 0.00 37.29 6.13
336 337 4.168291 GAAGGAGCTCAGGGGCGG 62.168 72.222 17.19 0.00 37.29 6.13
360 361 3.786101 CGGACCTTCGTCTGCATG 58.214 61.111 0.00 0.00 38.53 4.06
361 362 1.811266 CGGACCTTCGTCTGCATGG 60.811 63.158 0.00 0.00 38.53 3.66
362 363 2.109126 GGACCTTCGTCTGCATGGC 61.109 63.158 0.00 0.00 39.15 4.40
363 364 2.045926 ACCTTCGTCTGCATGGCC 60.046 61.111 0.00 0.00 0.00 5.36
364 365 2.270205 CCTTCGTCTGCATGGCCT 59.730 61.111 3.32 0.00 0.00 5.19
365 366 1.377725 CCTTCGTCTGCATGGCCTT 60.378 57.895 3.32 0.00 0.00 4.35
366 367 1.372087 CCTTCGTCTGCATGGCCTTC 61.372 60.000 3.32 0.00 0.00 3.46
367 368 1.372087 CTTCGTCTGCATGGCCTTCC 61.372 60.000 3.32 0.00 0.00 3.46
368 369 1.841302 TTCGTCTGCATGGCCTTCCT 61.841 55.000 3.32 0.00 0.00 3.36
369 370 2.110967 CGTCTGCATGGCCTTCCTG 61.111 63.158 3.32 0.00 0.00 3.86
370 371 1.751927 GTCTGCATGGCCTTCCTGG 60.752 63.158 3.32 0.00 39.35 4.45
384 385 2.266055 CTGGCTGACGGGACCTTC 59.734 66.667 0.00 0.00 0.00 3.46
385 386 3.649277 CTGGCTGACGGGACCTTCG 62.649 68.421 0.00 0.00 0.00 3.79
386 387 3.692406 GGCTGACGGGACCTTCGT 61.692 66.667 0.00 0.00 44.03 3.85
390 391 2.177778 GACGGGACCTTCGTCGTC 59.822 66.667 7.41 6.08 45.53 4.20
391 392 3.657835 GACGGGACCTTCGTCGTCG 62.658 68.421 7.41 0.00 45.53 5.12
392 393 4.471726 CGGGACCTTCGTCGTCGG 62.472 72.222 1.55 0.00 40.17 4.79
393 394 4.790861 GGGACCTTCGTCGTCGGC 62.791 72.222 1.55 0.00 40.17 5.54
394 395 4.790861 GGACCTTCGTCGTCGGCC 62.791 72.222 1.55 0.00 40.17 6.13
395 396 4.790861 GACCTTCGTCGTCGGCCC 62.791 72.222 0.00 0.00 37.69 5.80
413 414 4.451150 GCCCCATCGCTGTCGTCA 62.451 66.667 0.00 0.00 36.96 4.35
414 415 2.501128 CCCCATCGCTGTCGTCAT 59.499 61.111 0.00 0.00 36.96 3.06
415 416 1.884464 CCCCATCGCTGTCGTCATG 60.884 63.158 0.00 0.00 36.96 3.07
416 417 1.884464 CCCATCGCTGTCGTCATGG 60.884 63.158 0.00 0.00 38.85 3.66
417 418 1.153568 CCATCGCTGTCGTCATGGT 60.154 57.895 0.00 0.00 36.13 3.55
418 419 1.148157 CCATCGCTGTCGTCATGGTC 61.148 60.000 0.00 0.00 36.13 4.02
419 420 1.141881 ATCGCTGTCGTCATGGTCC 59.858 57.895 0.00 0.00 36.96 4.46
420 421 1.323271 ATCGCTGTCGTCATGGTCCT 61.323 55.000 0.00 0.00 36.96 3.85
421 422 1.079819 CGCTGTCGTCATGGTCCTT 60.080 57.895 0.00 0.00 0.00 3.36
422 423 1.078759 CGCTGTCGTCATGGTCCTTC 61.079 60.000 0.00 0.00 0.00 3.46
423 424 0.247736 GCTGTCGTCATGGTCCTTCT 59.752 55.000 0.00 0.00 0.00 2.85
424 425 1.476891 GCTGTCGTCATGGTCCTTCTA 59.523 52.381 0.00 0.00 0.00 2.10
425 426 2.480416 GCTGTCGTCATGGTCCTTCTAG 60.480 54.545 0.00 0.00 0.00 2.43
426 427 1.476891 TGTCGTCATGGTCCTTCTAGC 59.523 52.381 0.00 0.00 0.00 3.42
427 428 0.738975 TCGTCATGGTCCTTCTAGCG 59.261 55.000 0.00 0.00 0.00 4.26
428 429 0.738975 CGTCATGGTCCTTCTAGCGA 59.261 55.000 0.00 0.00 0.00 4.93
429 430 1.534175 CGTCATGGTCCTTCTAGCGAC 60.534 57.143 0.00 0.00 0.00 5.19
430 431 0.738975 TCATGGTCCTTCTAGCGACG 59.261 55.000 0.00 0.00 0.00 5.12
431 432 0.738975 CATGGTCCTTCTAGCGACGA 59.261 55.000 0.00 0.00 0.00 4.20
432 433 1.134367 CATGGTCCTTCTAGCGACGAA 59.866 52.381 0.00 0.00 0.00 3.85
433 434 1.250328 TGGTCCTTCTAGCGACGAAA 58.750 50.000 0.00 0.00 0.00 3.46
434 435 1.201647 TGGTCCTTCTAGCGACGAAAG 59.798 52.381 0.00 0.00 0.00 2.62
435 436 1.469423 GGTCCTTCTAGCGACGAAAGG 60.469 57.143 0.00 5.76 0.00 3.11
436 437 0.815734 TCCTTCTAGCGACGAAAGGG 59.184 55.000 14.65 3.60 0.00 3.95
437 438 0.806492 CCTTCTAGCGACGAAAGGGC 60.806 60.000 0.00 0.00 35.29 5.19
438 439 0.108804 CTTCTAGCGACGAAAGGGCA 60.109 55.000 0.00 0.00 37.16 5.36
439 440 0.535335 TTCTAGCGACGAAAGGGCAT 59.465 50.000 0.00 0.00 37.16 4.40
440 441 0.179111 TCTAGCGACGAAAGGGCATG 60.179 55.000 0.00 0.00 37.16 4.06
441 442 0.460284 CTAGCGACGAAAGGGCATGT 60.460 55.000 0.00 0.00 37.16 3.21
442 443 0.818938 TAGCGACGAAAGGGCATGTA 59.181 50.000 0.00 0.00 37.16 2.29
443 444 0.178068 AGCGACGAAAGGGCATGTAT 59.822 50.000 0.00 0.00 37.16 2.29
444 445 0.304705 GCGACGAAAGGGCATGTATG 59.695 55.000 0.00 0.00 35.19 2.39
445 446 0.937304 CGACGAAAGGGCATGTATGG 59.063 55.000 0.00 0.00 0.00 2.74
446 447 1.308998 GACGAAAGGGCATGTATGGG 58.691 55.000 0.00 0.00 0.00 4.00
447 448 0.751643 ACGAAAGGGCATGTATGGGC 60.752 55.000 0.00 0.00 0.00 5.36
448 449 0.751277 CGAAAGGGCATGTATGGGCA 60.751 55.000 0.00 0.00 0.00 5.36
449 450 1.708341 GAAAGGGCATGTATGGGCAT 58.292 50.000 0.00 0.00 0.00 4.40
450 451 2.813726 CGAAAGGGCATGTATGGGCATA 60.814 50.000 0.00 0.00 0.00 3.14
451 452 2.592102 AAGGGCATGTATGGGCATAG 57.408 50.000 0.00 0.00 0.00 2.23
452 453 0.038744 AGGGCATGTATGGGCATAGC 59.961 55.000 0.00 0.00 0.00 2.97
453 454 0.251297 GGGCATGTATGGGCATAGCA 60.251 55.000 0.00 0.00 0.00 3.49
454 455 1.171308 GGCATGTATGGGCATAGCAG 58.829 55.000 0.00 0.00 0.00 4.24
455 456 1.546323 GGCATGTATGGGCATAGCAGT 60.546 52.381 0.00 0.00 0.00 4.40
456 457 2.233271 GCATGTATGGGCATAGCAGTT 58.767 47.619 0.00 0.00 0.00 3.16
457 458 2.227388 GCATGTATGGGCATAGCAGTTC 59.773 50.000 0.00 0.00 0.00 3.01
458 459 3.748083 CATGTATGGGCATAGCAGTTCT 58.252 45.455 0.00 0.00 0.00 3.01
459 460 3.198409 TGTATGGGCATAGCAGTTCTG 57.802 47.619 0.00 0.00 0.00 3.02
460 461 2.771372 TGTATGGGCATAGCAGTTCTGA 59.229 45.455 3.84 0.00 0.00 3.27
461 462 3.392285 TGTATGGGCATAGCAGTTCTGAT 59.608 43.478 3.84 0.00 0.00 2.90
462 463 3.589951 ATGGGCATAGCAGTTCTGATT 57.410 42.857 3.84 0.00 0.00 2.57
463 464 3.370840 TGGGCATAGCAGTTCTGATTT 57.629 42.857 3.84 0.00 0.00 2.17
464 465 3.018856 TGGGCATAGCAGTTCTGATTTG 58.981 45.455 3.84 4.30 0.00 2.32
465 466 2.223665 GGGCATAGCAGTTCTGATTTGC 60.224 50.000 19.38 19.38 38.09 3.68
466 467 2.223665 GGCATAGCAGTTCTGATTTGCC 60.224 50.000 26.48 26.48 38.58 4.52
467 468 2.424601 GCATAGCAGTTCTGATTTGCCA 59.575 45.455 17.71 0.00 38.58 4.92
468 469 3.733077 GCATAGCAGTTCTGATTTGCCAC 60.733 47.826 17.71 0.00 38.58 5.01
469 470 1.251251 AGCAGTTCTGATTTGCCACC 58.749 50.000 3.84 0.00 38.58 4.61
470 471 0.961019 GCAGTTCTGATTTGCCACCA 59.039 50.000 3.84 0.00 31.79 4.17
471 472 1.336240 GCAGTTCTGATTTGCCACCAC 60.336 52.381 3.84 0.00 31.79 4.16
472 473 1.955778 CAGTTCTGATTTGCCACCACA 59.044 47.619 0.00 0.00 0.00 4.17
473 474 2.559668 CAGTTCTGATTTGCCACCACAT 59.440 45.455 0.00 0.00 0.00 3.21
474 475 2.559668 AGTTCTGATTTGCCACCACATG 59.440 45.455 0.00 0.00 0.00 3.21
475 476 0.889994 TCTGATTTGCCACCACATGC 59.110 50.000 0.00 0.00 0.00 4.06
476 477 0.457166 CTGATTTGCCACCACATGCG 60.457 55.000 0.00 0.00 0.00 4.73
477 478 0.892814 TGATTTGCCACCACATGCGA 60.893 50.000 0.00 0.00 0.00 5.10
478 479 0.243365 GATTTGCCACCACATGCGAA 59.757 50.000 0.00 0.00 35.45 4.70
479 480 0.244450 ATTTGCCACCACATGCGAAG 59.756 50.000 0.00 0.00 34.52 3.79
495 496 3.850657 CGAAGCAAAGCTATACTGCTC 57.149 47.619 11.56 6.33 45.50 4.26
496 497 3.190079 CGAAGCAAAGCTATACTGCTCA 58.810 45.455 11.56 0.00 45.50 4.26
497 498 3.244814 CGAAGCAAAGCTATACTGCTCAG 59.755 47.826 11.56 6.63 45.50 3.35
498 499 2.559440 AGCAAAGCTATACTGCTCAGC 58.441 47.619 6.69 0.00 42.73 4.26
499 500 3.370315 AAGCAAAGCTATACTGCTCAGCT 60.370 43.478 11.56 8.93 45.50 4.24
503 504 2.676748 AGCTATACTGCTCAGCTTCCT 58.323 47.619 0.00 0.00 42.95 3.36
504 505 2.627699 AGCTATACTGCTCAGCTTCCTC 59.372 50.000 0.00 0.00 42.95 3.71
505 506 2.627699 GCTATACTGCTCAGCTTCCTCT 59.372 50.000 0.00 0.00 32.46 3.69
506 507 3.552684 GCTATACTGCTCAGCTTCCTCTG 60.553 52.174 0.00 0.00 35.46 3.35
507 508 0.534412 TACTGCTCAGCTTCCTCTGC 59.466 55.000 0.00 0.00 34.19 4.26
508 509 1.449956 CTGCTCAGCTTCCTCTGCC 60.450 63.158 0.00 0.00 34.19 4.85
509 510 2.181445 CTGCTCAGCTTCCTCTGCCA 62.181 60.000 0.00 0.00 34.19 4.92
510 511 1.744741 GCTCAGCTTCCTCTGCCAC 60.745 63.158 0.00 0.00 34.19 5.01
511 512 1.078567 CTCAGCTTCCTCTGCCACC 60.079 63.158 0.00 0.00 34.19 4.61
512 513 2.435586 CAGCTTCCTCTGCCACCG 60.436 66.667 0.00 0.00 0.00 4.94
513 514 4.400961 AGCTTCCTCTGCCACCGC 62.401 66.667 0.00 0.00 0.00 5.68
515 516 4.020617 CTTCCTCTGCCACCGCCA 62.021 66.667 0.00 0.00 0.00 5.69
516 517 3.329889 TTCCTCTGCCACCGCCAT 61.330 61.111 0.00 0.00 0.00 4.40
517 518 3.626996 TTCCTCTGCCACCGCCATG 62.627 63.158 0.00 0.00 0.00 3.66
531 532 4.541482 CATGCGCATGCCCGTGTC 62.541 66.667 35.08 0.00 41.78 3.67
536 537 3.364441 GCATGCCCGTGTCAGCAA 61.364 61.111 6.36 0.00 43.36 3.91
537 538 2.562912 CATGCCCGTGTCAGCAAC 59.437 61.111 0.00 0.00 43.36 4.17
538 539 3.049674 ATGCCCGTGTCAGCAACG 61.050 61.111 0.00 0.00 43.36 4.10
583 584 3.830192 GCCTTGCCCTTGCCGATG 61.830 66.667 0.00 0.00 36.33 3.84
584 585 2.045045 CCTTGCCCTTGCCGATGA 60.045 61.111 0.00 0.00 36.33 2.92
585 586 2.409870 CCTTGCCCTTGCCGATGAC 61.410 63.158 0.00 0.00 36.33 3.06
586 587 2.745884 TTGCCCTTGCCGATGACG 60.746 61.111 0.00 0.00 36.33 4.35
587 588 3.247056 TTGCCCTTGCCGATGACGA 62.247 57.895 0.00 0.00 39.66 4.20
588 589 2.892425 GCCCTTGCCGATGACGAG 60.892 66.667 0.00 0.00 42.66 4.18
589 590 2.202932 CCCTTGCCGATGACGAGG 60.203 66.667 0.00 0.00 42.66 4.63
590 591 2.202932 CCTTGCCGATGACGAGGG 60.203 66.667 0.00 0.00 42.66 4.30
616 617 1.652563 GTGAAACGAGTTGGCCACC 59.347 57.895 3.88 0.00 0.00 4.61
617 618 1.527380 TGAAACGAGTTGGCCACCC 60.527 57.895 3.88 0.00 0.00 4.61
618 619 1.527380 GAAACGAGTTGGCCACCCA 60.527 57.895 3.88 0.00 40.06 4.51
625 626 4.335214 TTGGCCACCCAATCGATG 57.665 55.556 3.88 0.00 46.01 3.84
626 627 1.688211 TTGGCCACCCAATCGATGA 59.312 52.632 3.88 0.00 46.01 2.92
627 628 0.038890 TTGGCCACCCAATCGATGAA 59.961 50.000 3.88 0.00 46.01 2.57
628 629 0.038890 TGGCCACCCAATCGATGAAA 59.961 50.000 0.00 0.00 38.46 2.69
629 630 0.740737 GGCCACCCAATCGATGAAAG 59.259 55.000 0.00 0.00 0.00 2.62
630 631 1.681780 GGCCACCCAATCGATGAAAGA 60.682 52.381 0.00 0.00 0.00 2.52
631 632 2.091541 GCCACCCAATCGATGAAAGAA 58.908 47.619 0.00 0.00 0.00 2.52
632 633 2.491693 GCCACCCAATCGATGAAAGAAA 59.508 45.455 0.00 0.00 0.00 2.52
633 634 3.673323 GCCACCCAATCGATGAAAGAAAC 60.673 47.826 0.00 0.00 0.00 2.78
634 635 3.119495 CCACCCAATCGATGAAAGAAACC 60.119 47.826 0.00 0.00 0.00 3.27
635 636 3.089284 ACCCAATCGATGAAAGAAACCC 58.911 45.455 0.00 0.00 0.00 4.11
636 637 3.245264 ACCCAATCGATGAAAGAAACCCT 60.245 43.478 0.00 0.00 0.00 4.34
637 638 4.018779 ACCCAATCGATGAAAGAAACCCTA 60.019 41.667 0.00 0.00 0.00 3.53
638 639 4.576463 CCCAATCGATGAAAGAAACCCTAG 59.424 45.833 0.00 0.00 0.00 3.02
639 640 4.035675 CCAATCGATGAAAGAAACCCTAGC 59.964 45.833 0.00 0.00 0.00 3.42
640 641 4.762289 ATCGATGAAAGAAACCCTAGCT 57.238 40.909 0.00 0.00 0.00 3.32
641 642 3.861840 TCGATGAAAGAAACCCTAGCTG 58.138 45.455 0.00 0.00 0.00 4.24
642 643 3.260884 TCGATGAAAGAAACCCTAGCTGT 59.739 43.478 0.00 0.00 0.00 4.40
643 644 3.372206 CGATGAAAGAAACCCTAGCTGTG 59.628 47.826 0.00 0.00 0.00 3.66
644 645 3.857157 TGAAAGAAACCCTAGCTGTGT 57.143 42.857 0.00 0.00 0.00 3.72
645 646 4.164843 TGAAAGAAACCCTAGCTGTGTT 57.835 40.909 0.00 0.00 0.00 3.32
646 647 4.532834 TGAAAGAAACCCTAGCTGTGTTT 58.467 39.130 0.00 2.94 35.06 2.83
647 648 4.578928 TGAAAGAAACCCTAGCTGTGTTTC 59.421 41.667 20.82 20.82 45.08 2.78
648 649 3.141767 AGAAACCCTAGCTGTGTTTCC 57.858 47.619 22.97 12.41 45.58 3.13
649 650 2.711547 AGAAACCCTAGCTGTGTTTCCT 59.288 45.455 22.97 13.74 45.58 3.36
650 651 3.908103 AGAAACCCTAGCTGTGTTTCCTA 59.092 43.478 22.97 0.00 45.58 2.94
651 652 4.536489 AGAAACCCTAGCTGTGTTTCCTAT 59.464 41.667 22.97 10.63 45.58 2.57
652 653 4.489306 AACCCTAGCTGTGTTTCCTATC 57.511 45.455 0.00 0.00 0.00 2.08
653 654 3.450904 ACCCTAGCTGTGTTTCCTATCA 58.549 45.455 0.00 0.00 0.00 2.15
654 655 3.197983 ACCCTAGCTGTGTTTCCTATCAC 59.802 47.826 0.00 0.00 35.43 3.06
655 656 3.197766 CCCTAGCTGTGTTTCCTATCACA 59.802 47.826 0.00 0.00 41.37 3.58
656 657 4.184629 CCTAGCTGTGTTTCCTATCACAC 58.815 47.826 0.00 0.00 43.15 3.82
657 658 2.688507 AGCTGTGTTTCCTATCACACG 58.311 47.619 0.00 0.00 45.37 4.49
658 659 2.299013 AGCTGTGTTTCCTATCACACGA 59.701 45.455 0.00 0.00 45.37 4.35
659 660 2.668457 GCTGTGTTTCCTATCACACGAG 59.332 50.000 0.00 0.00 45.37 4.18
660 661 3.861131 GCTGTGTTTCCTATCACACGAGT 60.861 47.826 0.00 0.00 45.37 4.18
661 662 4.307432 CTGTGTTTCCTATCACACGAGTT 58.693 43.478 0.00 0.00 45.37 3.01
662 663 4.055360 TGTGTTTCCTATCACACGAGTTG 58.945 43.478 0.00 0.00 45.37 3.16
663 664 4.056050 GTGTTTCCTATCACACGAGTTGT 58.944 43.478 0.00 0.00 39.97 3.32
677 678 4.755411 ACGAGTTGTGAGAAGAAAACTCA 58.245 39.130 13.14 0.00 45.67 3.41
678 679 5.360591 ACGAGTTGTGAGAAGAAAACTCAT 58.639 37.500 13.14 0.00 45.67 2.90
679 680 5.817816 ACGAGTTGTGAGAAGAAAACTCATT 59.182 36.000 13.14 0.00 45.67 2.57
680 681 6.984474 ACGAGTTGTGAGAAGAAAACTCATTA 59.016 34.615 13.14 0.00 45.67 1.90
681 682 7.657761 ACGAGTTGTGAGAAGAAAACTCATTAT 59.342 33.333 13.14 0.00 45.67 1.28
682 683 8.499162 CGAGTTGTGAGAAGAAAACTCATTATT 58.501 33.333 13.14 0.00 45.67 1.40
683 684 9.818796 GAGTTGTGAGAAGAAAACTCATTATTC 57.181 33.333 9.01 0.00 45.05 1.75
684 685 9.566432 AGTTGTGAGAAGAAAACTCATTATTCT 57.434 29.630 0.00 0.00 44.41 2.40
704 705 9.516546 TTATTCTACTAGATGATGACATACGGT 57.483 33.333 0.00 0.00 36.82 4.83
717 718 5.477384 GACATACGGTCGTTCGATTAATC 57.523 43.478 5.30 5.30 36.65 1.75
718 719 5.179045 ACATACGGTCGTTCGATTAATCT 57.821 39.130 13.45 0.00 0.00 2.40
719 720 5.585390 ACATACGGTCGTTCGATTAATCTT 58.415 37.500 13.45 0.00 0.00 2.40
720 721 6.728200 ACATACGGTCGTTCGATTAATCTTA 58.272 36.000 13.45 0.00 0.00 2.10
721 722 6.634436 ACATACGGTCGTTCGATTAATCTTAC 59.366 38.462 13.45 9.62 0.00 2.34
722 723 5.240713 ACGGTCGTTCGATTAATCTTACT 57.759 39.130 13.45 0.00 0.00 2.24
723 724 5.269313 ACGGTCGTTCGATTAATCTTACTC 58.731 41.667 13.45 6.96 0.00 2.59
724 725 4.674211 CGGTCGTTCGATTAATCTTACTCC 59.326 45.833 13.45 12.76 0.00 3.85
725 726 4.981054 GGTCGTTCGATTAATCTTACTCCC 59.019 45.833 13.45 8.95 0.00 4.30
726 727 5.221204 GGTCGTTCGATTAATCTTACTCCCT 60.221 44.000 13.45 0.00 0.00 4.20
727 728 5.914074 GTCGTTCGATTAATCTTACTCCCTC 59.086 44.000 13.45 0.00 0.00 4.30
728 729 5.009410 TCGTTCGATTAATCTTACTCCCTCC 59.991 44.000 13.45 0.00 0.00 4.30
729 730 5.221130 GTTCGATTAATCTTACTCCCTCCG 58.779 45.833 13.45 0.00 0.00 4.63
730 731 3.255149 TCGATTAATCTTACTCCCTCCGC 59.745 47.826 13.45 0.00 0.00 5.54
731 732 3.005472 CGATTAATCTTACTCCCTCCGCA 59.995 47.826 13.45 0.00 0.00 5.69
732 733 4.322049 CGATTAATCTTACTCCCTCCGCAT 60.322 45.833 13.45 0.00 0.00 4.73
733 734 4.602340 TTAATCTTACTCCCTCCGCATC 57.398 45.455 0.00 0.00 0.00 3.91
734 735 2.088104 ATCTTACTCCCTCCGCATCA 57.912 50.000 0.00 0.00 0.00 3.07
735 736 2.088104 TCTTACTCCCTCCGCATCAT 57.912 50.000 0.00 0.00 0.00 2.45
736 737 3.238788 TCTTACTCCCTCCGCATCATA 57.761 47.619 0.00 0.00 0.00 2.15
737 738 3.572642 TCTTACTCCCTCCGCATCATAA 58.427 45.455 0.00 0.00 0.00 1.90
738 739 3.964688 TCTTACTCCCTCCGCATCATAAA 59.035 43.478 0.00 0.00 0.00 1.40
739 740 2.918712 ACTCCCTCCGCATCATAAAG 57.081 50.000 0.00 0.00 0.00 1.85
740 741 2.119495 ACTCCCTCCGCATCATAAAGT 58.881 47.619 0.00 0.00 0.00 2.66
741 742 2.158900 ACTCCCTCCGCATCATAAAGTG 60.159 50.000 0.00 0.00 0.00 3.16
742 743 2.103094 CTCCCTCCGCATCATAAAGTGA 59.897 50.000 0.00 0.00 42.06 3.41
753 754 5.648178 ATCATAAAGTGATGCTTTGCACA 57.352 34.783 0.00 0.00 45.76 4.57
754 755 5.648178 TCATAAAGTGATGCTTTGCACAT 57.352 34.783 0.00 0.00 46.07 3.21
755 756 5.404096 TCATAAAGTGATGCTTTGCACATG 58.596 37.500 0.00 0.00 46.07 3.21
756 757 2.074547 AAGTGATGCTTTGCACATGC 57.925 45.000 0.00 0.00 43.04 4.06
757 758 0.245539 AGTGATGCTTTGCACATGCC 59.754 50.000 0.49 0.00 43.04 4.40
758 759 0.245539 GTGATGCTTTGCACATGCCT 59.754 50.000 0.49 0.00 43.04 4.75
759 760 0.970640 TGATGCTTTGCACATGCCTT 59.029 45.000 0.49 0.00 43.04 4.35
760 761 1.067425 TGATGCTTTGCACATGCCTTC 60.067 47.619 0.49 0.00 43.04 3.46
761 762 0.970640 ATGCTTTGCACATGCCTTCA 59.029 45.000 0.49 0.00 43.04 3.02
762 763 0.315886 TGCTTTGCACATGCCTTCAG 59.684 50.000 0.49 0.00 41.18 3.02
763 764 0.316204 GCTTTGCACATGCCTTCAGT 59.684 50.000 0.49 0.00 41.18 3.41
764 765 1.668047 GCTTTGCACATGCCTTCAGTC 60.668 52.381 0.49 0.00 41.18 3.51
765 766 1.610038 CTTTGCACATGCCTTCAGTCA 59.390 47.619 0.49 0.00 41.18 3.41
766 767 1.913778 TTGCACATGCCTTCAGTCAT 58.086 45.000 0.49 0.00 41.18 3.06
767 768 2.785540 TGCACATGCCTTCAGTCATA 57.214 45.000 0.49 0.00 41.18 2.15
768 769 3.070476 TGCACATGCCTTCAGTCATAA 57.930 42.857 0.49 0.00 41.18 1.90
769 770 3.623703 TGCACATGCCTTCAGTCATAAT 58.376 40.909 0.49 0.00 41.18 1.28
770 771 3.628942 TGCACATGCCTTCAGTCATAATC 59.371 43.478 0.49 0.00 41.18 1.75
771 772 3.881688 GCACATGCCTTCAGTCATAATCT 59.118 43.478 0.00 0.00 34.31 2.40
772 773 4.337555 GCACATGCCTTCAGTCATAATCTT 59.662 41.667 0.00 0.00 34.31 2.40
773 774 5.528690 GCACATGCCTTCAGTCATAATCTTA 59.471 40.000 0.00 0.00 34.31 2.10
774 775 6.038603 GCACATGCCTTCAGTCATAATCTTAA 59.961 38.462 0.00 0.00 34.31 1.85
775 776 7.415541 GCACATGCCTTCAGTCATAATCTTAAA 60.416 37.037 0.00 0.00 34.31 1.52
776 777 8.627403 CACATGCCTTCAGTCATAATCTTAAAT 58.373 33.333 0.00 0.00 0.00 1.40
777 778 8.844244 ACATGCCTTCAGTCATAATCTTAAATC 58.156 33.333 0.00 0.00 0.00 2.17
778 779 9.064706 CATGCCTTCAGTCATAATCTTAAATCT 57.935 33.333 0.00 0.00 0.00 2.40
779 780 9.638176 ATGCCTTCAGTCATAATCTTAAATCTT 57.362 29.630 0.00 0.00 0.00 2.40
780 781 8.896744 TGCCTTCAGTCATAATCTTAAATCTTG 58.103 33.333 0.00 0.00 0.00 3.02
781 782 9.113838 GCCTTCAGTCATAATCTTAAATCTTGA 57.886 33.333 0.00 0.00 0.00 3.02
882 883 9.778741 ATCTTTGCGTGATAGAAAAATATAGGA 57.221 29.630 0.00 0.00 0.00 2.94
883 884 9.261180 TCTTTGCGTGATAGAAAAATATAGGAG 57.739 33.333 0.00 0.00 0.00 3.69
884 885 8.958119 TTTGCGTGATAGAAAAATATAGGAGT 57.042 30.769 0.00 0.00 0.00 3.85
885 886 7.946655 TGCGTGATAGAAAAATATAGGAGTG 57.053 36.000 0.00 0.00 0.00 3.51
886 887 6.929049 TGCGTGATAGAAAAATATAGGAGTGG 59.071 38.462 0.00 0.00 0.00 4.00
887 888 6.929606 GCGTGATAGAAAAATATAGGAGTGGT 59.070 38.462 0.00 0.00 0.00 4.16
888 889 8.086522 GCGTGATAGAAAAATATAGGAGTGGTA 58.913 37.037 0.00 0.00 0.00 3.25
889 890 9.627395 CGTGATAGAAAAATATAGGAGTGGTAG 57.373 37.037 0.00 0.00 0.00 3.18
901 902 9.908747 ATATAGGAGTGGTAGTATATGACAGTC 57.091 37.037 0.00 0.00 0.00 3.51
902 903 6.268855 AGGAGTGGTAGTATATGACAGTCT 57.731 41.667 1.31 0.00 33.27 3.24
903 904 6.065374 AGGAGTGGTAGTATATGACAGTCTG 58.935 44.000 1.31 0.00 33.27 3.51
904 905 6.062749 GGAGTGGTAGTATATGACAGTCTGA 58.937 44.000 6.91 0.00 33.27 3.27
905 906 6.717540 GGAGTGGTAGTATATGACAGTCTGAT 59.282 42.308 6.91 0.00 33.27 2.90
906 907 7.094549 GGAGTGGTAGTATATGACAGTCTGATC 60.095 44.444 6.91 1.32 33.27 2.92
907 908 7.522542 AGTGGTAGTATATGACAGTCTGATCT 58.477 38.462 6.91 0.00 0.00 2.75
908 909 7.446931 AGTGGTAGTATATGACAGTCTGATCTG 59.553 40.741 6.91 0.00 40.80 2.90
909 910 6.207614 TGGTAGTATATGACAGTCTGATCTGC 59.792 42.308 6.91 0.00 38.84 4.26
910 911 5.720371 AGTATATGACAGTCTGATCTGCC 57.280 43.478 6.91 0.00 38.84 4.85
911 912 5.392995 AGTATATGACAGTCTGATCTGCCT 58.607 41.667 6.91 0.00 38.84 4.75
912 913 4.870123 ATATGACAGTCTGATCTGCCTC 57.130 45.455 6.91 0.00 38.84 4.70
913 914 1.189752 TGACAGTCTGATCTGCCTCC 58.810 55.000 6.91 0.00 38.84 4.30
914 915 1.189752 GACAGTCTGATCTGCCTCCA 58.810 55.000 6.91 0.00 38.84 3.86
915 916 1.136695 GACAGTCTGATCTGCCTCCAG 59.863 57.143 6.91 0.00 38.84 3.86
923 924 3.639099 TCTGCCTCCAGAAGCAAAG 57.361 52.632 0.00 0.00 44.79 2.77
924 925 0.607489 TCTGCCTCCAGAAGCAAAGC 60.607 55.000 0.00 0.00 44.79 3.51
925 926 0.892358 CTGCCTCCAGAAGCAAAGCA 60.892 55.000 0.00 0.00 41.77 3.91
926 927 0.467844 TGCCTCCAGAAGCAAAGCAA 60.468 50.000 0.00 0.00 35.69 3.91
927 928 0.243095 GCCTCCAGAAGCAAAGCAAG 59.757 55.000 0.00 0.00 0.00 4.01
928 929 0.243095 CCTCCAGAAGCAAAGCAAGC 59.757 55.000 0.00 0.00 0.00 4.01
929 930 1.245732 CTCCAGAAGCAAAGCAAGCT 58.754 50.000 0.00 0.00 45.97 3.74
930 931 2.430465 CTCCAGAAGCAAAGCAAGCTA 58.570 47.619 0.00 0.00 42.53 3.32
931 932 3.015327 CTCCAGAAGCAAAGCAAGCTAT 58.985 45.455 0.00 0.00 42.53 2.97
932 933 4.194640 CTCCAGAAGCAAAGCAAGCTATA 58.805 43.478 0.00 0.00 42.53 1.31
933 934 4.194640 TCCAGAAGCAAAGCAAGCTATAG 58.805 43.478 0.00 0.00 42.53 1.31
934 935 3.243002 CCAGAAGCAAAGCAAGCTATAGC 60.243 47.826 17.33 17.33 42.53 2.97
935 936 3.376234 CAGAAGCAAAGCAAGCTATAGCA 59.624 43.478 26.07 0.00 42.53 3.49
936 937 3.626670 AGAAGCAAAGCAAGCTATAGCAG 59.373 43.478 26.07 18.28 42.53 4.24
937 938 2.996631 AGCAAAGCAAGCTATAGCAGT 58.003 42.857 26.07 11.10 45.16 4.40
938 939 2.941720 AGCAAAGCAAGCTATAGCAGTC 59.058 45.455 26.07 13.58 45.16 3.51
939 940 2.032675 GCAAAGCAAGCTATAGCAGTCC 59.967 50.000 26.07 11.28 45.16 3.85
940 941 3.273434 CAAAGCAAGCTATAGCAGTCCA 58.727 45.455 26.07 0.00 45.16 4.02
941 942 2.906691 AGCAAGCTATAGCAGTCCAG 57.093 50.000 26.07 9.96 45.16 3.86
942 943 2.114616 AGCAAGCTATAGCAGTCCAGT 58.885 47.619 26.07 0.78 45.16 4.00
943 944 2.102252 AGCAAGCTATAGCAGTCCAGTC 59.898 50.000 26.07 6.57 45.16 3.51
944 945 2.804933 GCAAGCTATAGCAGTCCAGTCC 60.805 54.545 26.07 1.09 45.16 3.85
945 946 2.432146 CAAGCTATAGCAGTCCAGTCCA 59.568 50.000 26.07 0.00 45.16 4.02
946 947 2.315176 AGCTATAGCAGTCCAGTCCAG 58.685 52.381 26.07 0.00 45.16 3.86
947 948 2.035632 GCTATAGCAGTCCAGTCCAGT 58.964 52.381 20.01 0.00 41.59 4.00
948 949 3.117474 AGCTATAGCAGTCCAGTCCAGTA 60.117 47.826 26.07 0.00 45.16 2.74
949 950 3.004944 GCTATAGCAGTCCAGTCCAGTAC 59.995 52.174 20.01 0.00 41.59 2.73
950 951 1.460504 TAGCAGTCCAGTCCAGTACG 58.539 55.000 0.00 0.00 0.00 3.67
951 952 1.446272 GCAGTCCAGTCCAGTACGC 60.446 63.158 0.00 0.00 0.00 4.42
952 953 1.154016 CAGTCCAGTCCAGTACGCG 60.154 63.158 3.53 3.53 0.00 6.01
953 954 2.506438 GTCCAGTCCAGTACGCGC 60.506 66.667 5.73 0.00 0.00 6.86
954 955 2.986979 TCCAGTCCAGTACGCGCA 60.987 61.111 5.73 0.00 0.00 6.09
955 956 2.809601 CCAGTCCAGTACGCGCAC 60.810 66.667 5.73 2.54 0.00 5.34
956 957 2.049526 CAGTCCAGTACGCGCACA 60.050 61.111 12.80 0.00 0.00 4.57
957 958 2.088763 CAGTCCAGTACGCGCACAG 61.089 63.158 12.80 3.19 0.00 3.66
958 959 2.257371 GTCCAGTACGCGCACAGA 59.743 61.111 12.80 5.16 0.00 3.41
959 960 1.801913 GTCCAGTACGCGCACAGAG 60.802 63.158 12.80 0.94 0.00 3.35
960 961 3.181967 CCAGTACGCGCACAGAGC 61.182 66.667 12.80 0.00 40.87 4.09
961 962 3.181967 CAGTACGCGCACAGAGCC 61.182 66.667 12.80 0.00 41.38 4.70
962 963 4.436998 AGTACGCGCACAGAGCCC 62.437 66.667 12.80 0.00 41.38 5.19
1006 1007 1.949847 CTTCTCCACGCCGATGTCCT 61.950 60.000 0.00 0.00 0.00 3.85
1040 1041 3.382832 CCGTCGCACCTCCTCCTT 61.383 66.667 0.00 0.00 0.00 3.36
1364 1394 0.958876 CTGATGAACTGCTGCTGCCA 60.959 55.000 13.47 3.94 38.71 4.92
1599 1636 3.962694 AGCAGGAGCCAGCAAGCA 61.963 61.111 6.67 0.00 43.56 3.91
1634 1677 1.064463 GGTGATGGCAAAGGGAGATGA 60.064 52.381 0.00 0.00 0.00 2.92
1662 1711 1.611977 CCCGGCGTTCTGTCATATAGA 59.388 52.381 6.01 0.00 0.00 1.98
2236 2285 5.837770 AGGAATGATGGATGAAGCTATGA 57.162 39.130 0.00 0.00 0.00 2.15
2246 2295 9.881649 GATGGATGAAGCTATGATCATACTTAA 57.118 33.333 20.80 17.07 37.70 1.85
2299 2348 7.810282 CGGATGTATTCACCTATTCAACTCTAG 59.190 40.741 0.00 0.00 0.00 2.43
2325 2374 3.658757 GCACTTTGCAAAATGGGTAGA 57.341 42.857 20.98 0.00 44.26 2.59
2342 2391 0.763652 AGACTGGCTGATGCTATGGG 59.236 55.000 0.00 0.00 39.59 4.00
2366 2418 6.758886 GGTAAGTTCAGTCAGATGATTGGTAG 59.241 42.308 5.62 0.00 33.27 3.18
2436 2488 6.072397 GCTTATGTACACATGGTGTTTTGGTA 60.072 38.462 7.37 0.00 45.08 3.25
2442 2494 4.081420 ACACATGGTGTTTTGGTAAAAGCA 60.081 37.500 0.00 0.00 45.08 3.91
2452 2504 4.664150 TTGGTAAAAGCAAAGGAGTTGG 57.336 40.909 0.00 0.00 37.73 3.77
2519 2571 8.312564 TGCATTCTTCAATTCAATAATGGACAA 58.687 29.630 3.07 0.00 0.00 3.18
2784 2839 6.348868 GGTTGAATCTGTTCAGAGAAATGTCC 60.349 42.308 8.47 2.44 44.62 4.02
2789 2844 6.566079 TCTGTTCAGAGAAATGTCCCATAT 57.434 37.500 0.00 0.00 0.00 1.78
2932 2987 7.816995 TGAGCATGCATACATACGACATATTTA 59.183 33.333 21.98 0.00 33.67 1.40
3104 3159 4.963276 TGTTTGCTGCTATATCAACCAC 57.037 40.909 0.00 0.00 0.00 4.16
3289 3345 0.676736 GGAGATAGTCAAGGCCGGAG 59.323 60.000 5.05 0.00 0.00 4.63
3431 3487 6.128929 GCAAAGTACCAATTTTTCGATGGAAC 60.129 38.462 8.96 0.00 37.66 3.62
3499 3565 1.866015 TCCCTCTCAACGATGTGGAT 58.134 50.000 0.00 0.00 0.00 3.41
3522 3589 0.538584 TGTCTCTTCCATGCGCTCAT 59.461 50.000 9.73 0.00 0.00 2.90
3620 3707 1.737838 TGTTCCTATTCTGCAAGCCG 58.262 50.000 0.00 0.00 0.00 5.52
3638 3729 0.461548 CGTCTCTATGCAAGGGCTGA 59.538 55.000 0.00 0.00 41.91 4.26
3641 3732 2.695666 GTCTCTATGCAAGGGCTGACTA 59.304 50.000 0.00 0.00 41.91 2.59
3760 3853 4.640789 TCAGGCTATTTCGAGTTCTCTC 57.359 45.455 0.00 0.00 37.35 3.20
3888 4008 4.025040 ACAACTTGCAATGATGGAGAGA 57.975 40.909 7.04 0.00 0.00 3.10
3889 4009 4.597004 ACAACTTGCAATGATGGAGAGAT 58.403 39.130 7.04 0.00 0.00 2.75
3920 4040 9.614792 ATGATTATACTACCTGAACCAAAACTC 57.385 33.333 0.00 0.00 0.00 3.01
3944 4064 6.416750 TCGAGCTATTGAAACGTGTGTATATG 59.583 38.462 0.00 0.00 0.00 1.78
4030 4156 6.524734 TGTAAGAGAAGACAAGAATGAGCAA 58.475 36.000 0.00 0.00 0.00 3.91
4044 4170 6.904626 AGAATGAGCAAGGTATAATGGTCTT 58.095 36.000 12.21 6.00 42.86 3.01
4045 4171 7.349598 AGAATGAGCAAGGTATAATGGTCTTT 58.650 34.615 12.21 11.74 42.86 2.52
4119 4250 8.970691 AATTAATGACGTTCCTTCAAATTCAG 57.029 30.769 0.00 0.00 0.00 3.02
4131 4262 8.099364 TCCTTCAAATTCAGCTTTAGTTGTAG 57.901 34.615 5.30 5.29 0.00 2.74
4132 4263 6.803807 CCTTCAAATTCAGCTTTAGTTGTAGC 59.196 38.462 5.30 0.00 37.66 3.58
4133 4264 6.875948 TCAAATTCAGCTTTAGTTGTAGCA 57.124 33.333 0.00 0.00 39.85 3.49
4134 4265 6.668323 TCAAATTCAGCTTTAGTTGTAGCAC 58.332 36.000 0.00 0.00 39.85 4.40
4135 4266 6.486657 TCAAATTCAGCTTTAGTTGTAGCACT 59.513 34.615 0.00 0.00 39.85 4.40
4136 4267 7.659799 TCAAATTCAGCTTTAGTTGTAGCACTA 59.340 33.333 0.00 0.00 39.85 2.74
4137 4268 6.969828 ATTCAGCTTTAGTTGTAGCACTAC 57.030 37.500 0.70 0.70 39.85 2.73
4138 4269 4.817517 TCAGCTTTAGTTGTAGCACTACC 58.182 43.478 5.40 0.00 39.85 3.18
4139 4270 3.612860 CAGCTTTAGTTGTAGCACTACCG 59.387 47.826 5.40 0.00 39.85 4.02
4174 4305 7.706607 GGTTTGAATATTTTTATGGCTGGACTC 59.293 37.037 0.00 0.00 0.00 3.36
4196 4328 7.450903 ACTCTTTTATAAAGCCTGTGTACAGT 58.549 34.615 10.80 0.00 42.27 3.55
4220 4352 5.888161 TCCTCTTTCCTTCAAATTCCTATGC 59.112 40.000 0.00 0.00 0.00 3.14
4222 4354 6.379417 CCTCTTTCCTTCAAATTCCTATGCTT 59.621 38.462 0.00 0.00 0.00 3.91
4277 4411 7.904558 ACTAATAGTGATCTGAATGAGGTGA 57.095 36.000 0.00 0.00 0.00 4.02
4278 4412 7.950512 ACTAATAGTGATCTGAATGAGGTGAG 58.049 38.462 0.00 0.00 0.00 3.51
4287 4422 4.103153 TCTGAATGAGGTGAGGTTGAGTTT 59.897 41.667 0.00 0.00 0.00 2.66
4300 4435 4.935205 AGGTTGAGTTTTTCAAAAACAGCC 59.065 37.500 24.33 16.57 46.85 4.85
4306 4441 2.284798 TTTCAAAAACAGCCGCCGCA 62.285 50.000 0.00 0.00 37.52 5.69
4326 4461 3.368635 GCAATGAACCCATTTCTGCATGA 60.369 43.478 0.00 0.00 40.81 3.07
4334 4469 4.960469 ACCCATTTCTGCATGATCTGAATT 59.040 37.500 0.00 0.00 0.00 2.17
4345 4480 4.952262 TGATCTGAATTGAAAGAAGCCG 57.048 40.909 0.00 0.00 0.00 5.52
4376 4512 1.067295 TCATTGGCCACTCTGTTCCT 58.933 50.000 3.88 0.00 0.00 3.36
4383 4519 1.457346 CCACTCTGTTCCTGCCAATC 58.543 55.000 0.00 0.00 0.00 2.67
4390 4526 3.344137 TTCCTGCCAATCCGCTCCC 62.344 63.158 0.00 0.00 0.00 4.30
4402 4538 1.599047 CGCTCCCTGAGTTGATGGT 59.401 57.895 0.00 0.00 31.39 3.55
4417 4553 7.770433 TGAGTTGATGGTCATGTAAATTCCTAG 59.230 37.037 0.00 0.00 0.00 3.02
4418 4554 7.861629 AGTTGATGGTCATGTAAATTCCTAGA 58.138 34.615 0.00 0.00 0.00 2.43
4419 4555 8.497745 AGTTGATGGTCATGTAAATTCCTAGAT 58.502 33.333 0.00 0.00 0.00 1.98
4420 4556 9.778741 GTTGATGGTCATGTAAATTCCTAGATA 57.221 33.333 0.00 0.00 0.00 1.98
4422 4558 9.778741 TGATGGTCATGTAAATTCCTAGATAAC 57.221 33.333 0.00 0.00 0.00 1.89
4423 4559 9.778741 GATGGTCATGTAAATTCCTAGATAACA 57.221 33.333 0.00 0.00 0.00 2.41
4424 4560 8.958119 TGGTCATGTAAATTCCTAGATAACAC 57.042 34.615 0.00 0.00 0.00 3.32
4425 4561 8.544622 TGGTCATGTAAATTCCTAGATAACACA 58.455 33.333 0.00 0.00 0.00 3.72
4426 4562 9.046296 GGTCATGTAAATTCCTAGATAACACAG 57.954 37.037 0.00 0.00 0.00 3.66
4427 4563 9.817809 GTCATGTAAATTCCTAGATAACACAGA 57.182 33.333 0.00 0.00 0.00 3.41
4431 4567 8.988060 TGTAAATTCCTAGATAACACAGATCCA 58.012 33.333 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.829990 CCCCTTCTTCTCCTCTGCTC 59.170 60.000 0.00 0.00 0.00 4.26
2 3 1.271127 GCCCCTTCTTCTCCTCTGCT 61.271 60.000 0.00 0.00 0.00 4.24
5 6 1.307430 GGGCCCCTTCTTCTCCTCT 60.307 63.158 12.23 0.00 0.00 3.69
6 7 2.379459 GGGGCCCCTTCTTCTCCTC 61.379 68.421 35.49 1.20 0.00 3.71
7 8 2.286502 GGGGCCCCTTCTTCTCCT 60.287 66.667 35.49 0.00 0.00 3.69
8 9 3.798511 CGGGGCCCCTTCTTCTCC 61.799 72.222 38.17 9.18 0.00 3.71
9 10 4.491409 GCGGGGCCCCTTCTTCTC 62.491 72.222 38.17 14.02 0.00 2.87
45 46 2.138656 CTGGTGCTGACAGGCAAAGC 62.139 60.000 4.26 0.00 44.18 3.51
46 47 1.954528 CTGGTGCTGACAGGCAAAG 59.045 57.895 4.26 1.52 44.18 2.77
47 48 2.195567 GCTGGTGCTGACAGGCAAA 61.196 57.895 4.26 0.00 44.18 3.68
48 49 2.595463 GCTGGTGCTGACAGGCAA 60.595 61.111 4.26 0.00 44.18 4.52
76 77 4.179599 CTCTCCCCCTCCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
77 78 4.179599 CCTCTCCCCCTCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
78 79 3.369388 ACCTCTCCCCCTCCTCCC 61.369 72.222 0.00 0.00 0.00 4.30
79 80 2.041405 CACCTCTCCCCCTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
80 81 2.041405 CCACCTCTCCCCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
81 82 3.700350 CCCACCTCTCCCCCTCCT 61.700 72.222 0.00 0.00 0.00 3.69
82 83 4.825679 CCCCACCTCTCCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
83 84 3.695825 TCCCCACCTCTCCCCCTC 61.696 72.222 0.00 0.00 0.00 4.30
84 85 4.026357 GTCCCCACCTCTCCCCCT 62.026 72.222 0.00 0.00 0.00 4.79
99 100 4.091939 AAACCCTAGCCGCCGGTC 62.092 66.667 4.45 0.00 0.00 4.79
100 101 4.091939 GAAACCCTAGCCGCCGGT 62.092 66.667 4.45 0.00 0.00 5.28
101 102 4.851179 GGAAACCCTAGCCGCCGG 62.851 72.222 0.00 0.00 0.00 6.13
113 114 3.065371 CCGCTATCATCAAACAGGGAAAC 59.935 47.826 0.00 0.00 0.00 2.78
114 115 3.278574 CCGCTATCATCAAACAGGGAAA 58.721 45.455 0.00 0.00 0.00 3.13
115 116 2.238646 ACCGCTATCATCAAACAGGGAA 59.761 45.455 0.00 0.00 0.00 3.97
116 117 1.837439 ACCGCTATCATCAAACAGGGA 59.163 47.619 0.00 0.00 0.00 4.20
117 118 2.332063 ACCGCTATCATCAAACAGGG 57.668 50.000 0.00 0.00 0.00 4.45
118 119 4.442706 ACTTACCGCTATCATCAAACAGG 58.557 43.478 0.00 0.00 0.00 4.00
119 120 6.092122 TCAAACTTACCGCTATCATCAAACAG 59.908 38.462 0.00 0.00 0.00 3.16
120 121 5.935206 TCAAACTTACCGCTATCATCAAACA 59.065 36.000 0.00 0.00 0.00 2.83
121 122 6.417191 TCAAACTTACCGCTATCATCAAAC 57.583 37.500 0.00 0.00 0.00 2.93
122 123 6.821160 TCATCAAACTTACCGCTATCATCAAA 59.179 34.615 0.00 0.00 0.00 2.69
123 124 6.345298 TCATCAAACTTACCGCTATCATCAA 58.655 36.000 0.00 0.00 0.00 2.57
124 125 5.912892 TCATCAAACTTACCGCTATCATCA 58.087 37.500 0.00 0.00 0.00 3.07
125 126 7.063544 GGTATCATCAAACTTACCGCTATCATC 59.936 40.741 0.00 0.00 0.00 2.92
126 127 6.874134 GGTATCATCAAACTTACCGCTATCAT 59.126 38.462 0.00 0.00 0.00 2.45
127 128 6.041637 AGGTATCATCAAACTTACCGCTATCA 59.958 38.462 0.00 0.00 39.27 2.15
128 129 6.456501 AGGTATCATCAAACTTACCGCTATC 58.543 40.000 0.00 0.00 39.27 2.08
129 130 6.267928 AGAGGTATCATCAAACTTACCGCTAT 59.732 38.462 2.91 0.00 41.27 2.97
130 131 5.597182 AGAGGTATCATCAAACTTACCGCTA 59.403 40.000 2.91 0.00 41.27 4.26
131 132 4.406003 AGAGGTATCATCAAACTTACCGCT 59.594 41.667 0.00 0.00 39.21 5.52
132 133 4.508124 CAGAGGTATCATCAAACTTACCGC 59.492 45.833 0.00 0.00 39.27 5.68
133 134 5.520288 CACAGAGGTATCATCAAACTTACCG 59.480 44.000 0.00 0.00 39.27 4.02
134 135 5.817816 CCACAGAGGTATCATCAAACTTACC 59.182 44.000 0.00 0.00 35.39 2.85
135 136 6.910536 CCACAGAGGTATCATCAAACTTAC 57.089 41.667 0.00 0.00 0.00 2.34
190 191 1.463444 GAGTTCCAAAATCCGGACACG 59.537 52.381 6.12 0.00 40.55 4.49
196 197 2.159627 CGTTGAGGAGTTCCAAAATCCG 59.840 50.000 0.28 0.00 38.20 4.18
217 218 1.654105 CACCAATCGTCGAGCAACTAC 59.346 52.381 0.00 0.00 0.00 2.73
242 243 1.144057 CCTCATCGTACCAGGGTGC 59.856 63.158 0.06 0.00 0.00 5.01
254 255 0.686224 CCCATGAGCTCCTCCTCATC 59.314 60.000 12.15 0.00 46.75 2.92
311 312 1.927608 CTGAGCTCCTTCTCGTCGCA 61.928 60.000 12.15 0.00 35.90 5.10
312 313 1.226547 CTGAGCTCCTTCTCGTCGC 60.227 63.158 12.15 0.00 35.90 5.19
313 314 1.431440 CCTGAGCTCCTTCTCGTCG 59.569 63.158 12.15 0.00 35.90 5.12
314 315 1.671901 CCCCTGAGCTCCTTCTCGTC 61.672 65.000 12.15 0.00 35.90 4.20
315 316 1.684049 CCCCTGAGCTCCTTCTCGT 60.684 63.158 12.15 0.00 35.90 4.18
316 317 3.087666 GCCCCTGAGCTCCTTCTCG 62.088 68.421 12.15 0.00 35.90 4.04
317 318 2.907236 GCCCCTGAGCTCCTTCTC 59.093 66.667 12.15 0.00 0.00 2.87
318 319 3.080121 CGCCCCTGAGCTCCTTCT 61.080 66.667 12.15 0.00 0.00 2.85
319 320 4.168291 CCGCCCCTGAGCTCCTTC 62.168 72.222 12.15 0.00 0.00 3.46
342 343 2.125512 ATGCAGACGAAGGTCCGC 60.126 61.111 0.00 0.00 44.97 5.54
343 344 1.811266 CCATGCAGACGAAGGTCCG 60.811 63.158 0.00 0.00 44.54 4.79
344 345 2.109126 GCCATGCAGACGAAGGTCC 61.109 63.158 0.00 0.00 44.54 4.46
345 346 2.109126 GGCCATGCAGACGAAGGTC 61.109 63.158 0.00 0.00 43.76 3.85
346 347 2.045926 GGCCATGCAGACGAAGGT 60.046 61.111 0.00 0.00 0.00 3.50
347 348 1.372087 GAAGGCCATGCAGACGAAGG 61.372 60.000 5.01 0.00 0.00 3.46
348 349 1.372087 GGAAGGCCATGCAGACGAAG 61.372 60.000 5.01 0.00 0.00 3.79
349 350 1.377202 GGAAGGCCATGCAGACGAA 60.377 57.895 5.01 0.00 0.00 3.85
350 351 2.268920 GGAAGGCCATGCAGACGA 59.731 61.111 5.01 0.00 0.00 4.20
351 352 2.110967 CAGGAAGGCCATGCAGACG 61.111 63.158 5.01 0.00 36.29 4.18
352 353 1.751927 CCAGGAAGGCCATGCAGAC 60.752 63.158 5.01 0.00 36.29 3.51
353 354 2.679092 CCAGGAAGGCCATGCAGA 59.321 61.111 5.01 0.00 36.29 4.26
362 363 3.003173 TCCCGTCAGCCAGGAAGG 61.003 66.667 0.00 0.00 41.84 3.46
363 364 2.266055 GTCCCGTCAGCCAGGAAG 59.734 66.667 0.00 0.00 0.00 3.46
364 365 3.319198 GGTCCCGTCAGCCAGGAA 61.319 66.667 0.00 0.00 0.00 3.36
365 366 3.846405 AAGGTCCCGTCAGCCAGGA 62.846 63.158 0.00 0.00 0.00 3.86
366 367 3.316573 GAAGGTCCCGTCAGCCAGG 62.317 68.421 0.00 0.00 0.00 4.45
367 368 2.266055 GAAGGTCCCGTCAGCCAG 59.734 66.667 0.00 0.00 0.00 4.85
368 369 3.691342 CGAAGGTCCCGTCAGCCA 61.691 66.667 0.33 0.00 0.00 4.75
369 370 3.692406 ACGAAGGTCCCGTCAGCC 61.692 66.667 0.00 0.00 34.97 4.85
374 375 3.730761 CGACGACGAAGGTCCCGT 61.731 66.667 0.00 0.00 43.56 5.28
375 376 4.471726 CCGACGACGAAGGTCCCG 62.472 72.222 9.28 0.00 40.17 5.14
376 377 4.790861 GCCGACGACGAAGGTCCC 62.791 72.222 9.28 0.00 40.17 4.46
377 378 4.790861 GGCCGACGACGAAGGTCC 62.791 72.222 9.28 6.48 40.17 4.46
378 379 4.790861 GGGCCGACGACGAAGGTC 62.791 72.222 9.28 5.58 42.66 3.85
396 397 3.740128 ATGACGACAGCGATGGGGC 62.740 63.158 5.32 0.00 41.64 5.80
397 398 1.884464 CATGACGACAGCGATGGGG 60.884 63.158 5.32 0.00 41.64 4.96
398 399 1.884464 CCATGACGACAGCGATGGG 60.884 63.158 5.32 0.00 37.91 4.00
399 400 1.148157 GACCATGACGACAGCGATGG 61.148 60.000 5.32 0.00 43.63 3.51
400 401 1.148157 GGACCATGACGACAGCGATG 61.148 60.000 0.00 0.00 41.64 3.84
401 402 1.141881 GGACCATGACGACAGCGAT 59.858 57.895 0.00 0.00 41.64 4.58
402 403 1.532604 AAGGACCATGACGACAGCGA 61.533 55.000 0.00 0.00 41.64 4.93
403 404 1.078759 GAAGGACCATGACGACAGCG 61.079 60.000 0.00 0.00 44.79 5.18
404 405 0.247736 AGAAGGACCATGACGACAGC 59.752 55.000 0.00 0.00 0.00 4.40
405 406 2.480416 GCTAGAAGGACCATGACGACAG 60.480 54.545 0.00 0.00 0.00 3.51
406 407 1.476891 GCTAGAAGGACCATGACGACA 59.523 52.381 0.00 0.00 0.00 4.35
407 408 1.534175 CGCTAGAAGGACCATGACGAC 60.534 57.143 0.00 0.00 0.00 4.34
408 409 0.738975 CGCTAGAAGGACCATGACGA 59.261 55.000 0.00 0.00 0.00 4.20
409 410 0.738975 TCGCTAGAAGGACCATGACG 59.261 55.000 0.00 0.00 0.00 4.35
410 411 1.534175 CGTCGCTAGAAGGACCATGAC 60.534 57.143 0.00 0.00 0.00 3.06
411 412 0.738975 CGTCGCTAGAAGGACCATGA 59.261 55.000 0.00 0.00 0.00 3.07
412 413 0.738975 TCGTCGCTAGAAGGACCATG 59.261 55.000 0.00 0.00 0.00 3.66
413 414 1.471119 TTCGTCGCTAGAAGGACCAT 58.529 50.000 0.00 0.00 0.00 3.55
414 415 1.201647 CTTTCGTCGCTAGAAGGACCA 59.798 52.381 0.00 0.00 0.00 4.02
415 416 1.469423 CCTTTCGTCGCTAGAAGGACC 60.469 57.143 0.00 0.00 0.00 4.46
416 417 1.469423 CCCTTTCGTCGCTAGAAGGAC 60.469 57.143 14.19 3.70 0.00 3.85
417 418 0.815734 CCCTTTCGTCGCTAGAAGGA 59.184 55.000 14.19 0.00 0.00 3.36
418 419 0.806492 GCCCTTTCGTCGCTAGAAGG 60.806 60.000 0.00 0.00 0.00 3.46
419 420 0.108804 TGCCCTTTCGTCGCTAGAAG 60.109 55.000 0.00 0.00 0.00 2.85
420 421 0.535335 ATGCCCTTTCGTCGCTAGAA 59.465 50.000 0.00 0.00 0.00 2.10
421 422 0.179111 CATGCCCTTTCGTCGCTAGA 60.179 55.000 0.00 0.00 0.00 2.43
422 423 0.460284 ACATGCCCTTTCGTCGCTAG 60.460 55.000 0.00 0.00 0.00 3.42
423 424 0.818938 TACATGCCCTTTCGTCGCTA 59.181 50.000 0.00 0.00 0.00 4.26
424 425 0.178068 ATACATGCCCTTTCGTCGCT 59.822 50.000 0.00 0.00 0.00 4.93
425 426 0.304705 CATACATGCCCTTTCGTCGC 59.695 55.000 0.00 0.00 0.00 5.19
426 427 0.937304 CCATACATGCCCTTTCGTCG 59.063 55.000 0.00 0.00 0.00 5.12
427 428 1.308998 CCCATACATGCCCTTTCGTC 58.691 55.000 0.00 0.00 0.00 4.20
428 429 0.751643 GCCCATACATGCCCTTTCGT 60.752 55.000 0.00 0.00 0.00 3.85
429 430 0.751277 TGCCCATACATGCCCTTTCG 60.751 55.000 0.00 0.00 0.00 3.46
430 431 1.708341 ATGCCCATACATGCCCTTTC 58.292 50.000 0.00 0.00 0.00 2.62
431 432 2.880443 CTATGCCCATACATGCCCTTT 58.120 47.619 0.00 0.00 0.00 3.11
432 433 1.548582 GCTATGCCCATACATGCCCTT 60.549 52.381 0.00 0.00 0.00 3.95
433 434 0.038744 GCTATGCCCATACATGCCCT 59.961 55.000 0.00 0.00 0.00 5.19
434 435 0.251297 TGCTATGCCCATACATGCCC 60.251 55.000 0.00 0.00 0.00 5.36
435 436 1.171308 CTGCTATGCCCATACATGCC 58.829 55.000 0.00 0.00 0.00 4.40
436 437 1.901591 ACTGCTATGCCCATACATGC 58.098 50.000 0.00 0.00 0.00 4.06
437 438 3.501062 CAGAACTGCTATGCCCATACATG 59.499 47.826 0.00 0.00 0.00 3.21
438 439 3.392285 TCAGAACTGCTATGCCCATACAT 59.608 43.478 0.00 0.00 0.00 2.29
439 440 2.771372 TCAGAACTGCTATGCCCATACA 59.229 45.455 0.00 0.00 0.00 2.29
440 441 3.475566 TCAGAACTGCTATGCCCATAC 57.524 47.619 0.00 0.00 0.00 2.39
441 442 4.712051 AATCAGAACTGCTATGCCCATA 57.288 40.909 0.00 0.00 0.00 2.74
442 443 3.589951 AATCAGAACTGCTATGCCCAT 57.410 42.857 0.00 0.00 0.00 4.00
443 444 3.018856 CAAATCAGAACTGCTATGCCCA 58.981 45.455 0.00 0.00 0.00 5.36
444 445 2.223665 GCAAATCAGAACTGCTATGCCC 60.224 50.000 11.46 0.00 33.20 5.36
445 446 2.223665 GGCAAATCAGAACTGCTATGCC 60.224 50.000 19.73 19.73 41.24 4.40
446 447 2.424601 TGGCAAATCAGAACTGCTATGC 59.575 45.455 13.06 13.06 36.32 3.14
447 448 3.181493 GGTGGCAAATCAGAACTGCTATG 60.181 47.826 6.96 0.00 36.32 2.23
448 449 3.019564 GGTGGCAAATCAGAACTGCTAT 58.980 45.455 6.96 0.00 36.32 2.97
449 450 2.224744 TGGTGGCAAATCAGAACTGCTA 60.225 45.455 6.96 0.00 36.32 3.49
450 451 1.251251 GGTGGCAAATCAGAACTGCT 58.749 50.000 6.96 0.00 36.32 4.24
451 452 0.961019 TGGTGGCAAATCAGAACTGC 59.039 50.000 0.00 0.00 35.28 4.40
452 453 1.955778 TGTGGTGGCAAATCAGAACTG 59.044 47.619 0.00 0.00 0.00 3.16
453 454 2.363306 TGTGGTGGCAAATCAGAACT 57.637 45.000 0.00 0.00 0.00 3.01
454 455 2.927871 GCATGTGGTGGCAAATCAGAAC 60.928 50.000 0.00 0.00 0.00 3.01
455 456 1.273048 GCATGTGGTGGCAAATCAGAA 59.727 47.619 0.00 0.00 0.00 3.02
456 457 0.889994 GCATGTGGTGGCAAATCAGA 59.110 50.000 0.00 0.00 0.00 3.27
457 458 0.457166 CGCATGTGGTGGCAAATCAG 60.457 55.000 0.00 0.00 0.00 2.90
458 459 0.892814 TCGCATGTGGTGGCAAATCA 60.893 50.000 6.39 0.00 0.00 2.57
459 460 0.243365 TTCGCATGTGGTGGCAAATC 59.757 50.000 6.39 0.00 0.00 2.17
460 461 0.244450 CTTCGCATGTGGTGGCAAAT 59.756 50.000 6.39 0.00 0.00 2.32
461 462 1.659233 CTTCGCATGTGGTGGCAAA 59.341 52.632 6.39 0.00 0.00 3.68
462 463 2.918345 GCTTCGCATGTGGTGGCAA 61.918 57.895 6.39 0.00 0.00 4.52
463 464 3.364441 GCTTCGCATGTGGTGGCA 61.364 61.111 6.39 0.00 0.00 4.92
464 465 2.419057 TTTGCTTCGCATGTGGTGGC 62.419 55.000 6.39 8.92 38.76 5.01
465 466 0.387622 CTTTGCTTCGCATGTGGTGG 60.388 55.000 6.39 0.00 38.76 4.61
466 467 1.005294 GCTTTGCTTCGCATGTGGTG 61.005 55.000 6.39 0.84 38.76 4.17
467 468 1.174712 AGCTTTGCTTCGCATGTGGT 61.175 50.000 6.39 0.00 38.76 4.16
468 469 0.804364 TAGCTTTGCTTCGCATGTGG 59.196 50.000 6.39 0.00 40.44 4.17
469 470 2.838386 ATAGCTTTGCTTCGCATGTG 57.162 45.000 0.00 0.00 40.44 3.21
470 471 3.310774 CAGTATAGCTTTGCTTCGCATGT 59.689 43.478 0.00 0.00 40.44 3.21
471 472 3.847467 GCAGTATAGCTTTGCTTCGCATG 60.847 47.826 0.00 0.00 40.44 4.06
472 473 2.289002 GCAGTATAGCTTTGCTTCGCAT 59.711 45.455 0.00 0.00 40.44 4.73
473 474 1.665679 GCAGTATAGCTTTGCTTCGCA 59.334 47.619 0.00 0.00 40.44 5.10
474 475 1.936547 AGCAGTATAGCTTTGCTTCGC 59.063 47.619 0.00 0.00 45.28 4.70
479 480 2.559440 AGCTGAGCAGTATAGCTTTGC 58.441 47.619 7.39 0.00 44.87 3.68
484 485 2.627699 AGAGGAAGCTGAGCAGTATAGC 59.372 50.000 7.39 0.00 37.71 2.97
485 486 3.552684 GCAGAGGAAGCTGAGCAGTATAG 60.553 52.174 7.39 0.00 38.14 1.31
486 487 2.363680 GCAGAGGAAGCTGAGCAGTATA 59.636 50.000 7.39 0.00 38.14 1.47
487 488 1.138661 GCAGAGGAAGCTGAGCAGTAT 59.861 52.381 7.39 0.00 38.14 2.12
488 489 0.534412 GCAGAGGAAGCTGAGCAGTA 59.466 55.000 7.39 0.00 38.14 2.74
489 490 1.296068 GCAGAGGAAGCTGAGCAGT 59.704 57.895 7.39 0.00 38.14 4.40
490 491 1.449956 GGCAGAGGAAGCTGAGCAG 60.450 63.158 7.39 0.00 38.14 4.24
491 492 2.219164 TGGCAGAGGAAGCTGAGCA 61.219 57.895 7.39 0.00 38.14 4.26
492 493 1.744741 GTGGCAGAGGAAGCTGAGC 60.745 63.158 0.00 0.00 38.14 4.26
493 494 1.078567 GGTGGCAGAGGAAGCTGAG 60.079 63.158 0.00 0.00 38.14 3.35
494 495 2.947532 CGGTGGCAGAGGAAGCTGA 61.948 63.158 0.00 0.00 38.14 4.26
495 496 2.435586 CGGTGGCAGAGGAAGCTG 60.436 66.667 0.00 0.00 38.91 4.24
496 497 4.400961 GCGGTGGCAGAGGAAGCT 62.401 66.667 0.00 0.00 39.62 3.74
498 499 3.335356 ATGGCGGTGGCAGAGGAAG 62.335 63.158 0.00 0.00 42.43 3.46
499 500 3.329889 ATGGCGGTGGCAGAGGAA 61.330 61.111 0.00 0.00 42.43 3.36
500 501 4.100084 CATGGCGGTGGCAGAGGA 62.100 66.667 0.00 0.00 42.43 3.71
514 515 4.541482 GACACGGGCATGCGCATG 62.541 66.667 39.42 39.42 41.24 4.06
519 520 3.364441 TTGCTGACACGGGCATGC 61.364 61.111 9.90 9.90 38.30 4.06
520 521 2.562912 GTTGCTGACACGGGCATG 59.437 61.111 0.00 0.00 38.30 4.06
521 522 3.049674 CGTTGCTGACACGGGCAT 61.050 61.111 0.00 0.00 38.30 4.40
566 567 3.830192 CATCGGCAAGGGCAAGGC 61.830 66.667 0.00 0.00 43.71 4.35
567 568 2.045045 TCATCGGCAAGGGCAAGG 60.045 61.111 0.00 0.00 43.71 3.61
568 569 2.753966 CGTCATCGGCAAGGGCAAG 61.754 63.158 0.00 0.00 43.71 4.01
569 570 2.745884 CGTCATCGGCAAGGGCAA 60.746 61.111 0.00 0.00 43.71 4.52
570 571 3.664025 CTCGTCATCGGCAAGGGCA 62.664 63.158 0.00 0.00 43.71 5.36
571 572 2.892425 CTCGTCATCGGCAAGGGC 60.892 66.667 0.00 0.00 37.69 5.19
572 573 2.202932 CCTCGTCATCGGCAAGGG 60.203 66.667 0.00 0.00 37.69 3.95
573 574 2.202932 CCCTCGTCATCGGCAAGG 60.203 66.667 0.00 0.00 37.69 3.61
574 575 2.892425 GCCCTCGTCATCGGCAAG 60.892 66.667 0.00 0.00 37.69 4.01
575 576 3.664025 CTGCCCTCGTCATCGGCAA 62.664 63.158 1.18 0.00 37.69 4.52
576 577 4.147449 CTGCCCTCGTCATCGGCA 62.147 66.667 0.00 0.00 37.69 5.69
590 591 4.430423 CTCGTTTCACGCCGCTGC 62.430 66.667 0.00 0.00 42.21 5.25
591 592 2.594962 AACTCGTTTCACGCCGCTG 61.595 57.895 0.00 0.00 42.21 5.18
592 593 2.279918 AACTCGTTTCACGCCGCT 60.280 55.556 0.00 0.00 42.21 5.52
593 594 2.127758 CAACTCGTTTCACGCCGC 60.128 61.111 0.00 0.00 42.21 6.53
594 595 2.549282 CCAACTCGTTTCACGCCG 59.451 61.111 0.00 0.00 42.21 6.46
595 596 2.251371 GCCAACTCGTTTCACGCC 59.749 61.111 0.00 0.00 42.21 5.68
596 597 2.251371 GGCCAACTCGTTTCACGC 59.749 61.111 0.00 0.00 42.21 5.34
597 598 1.278637 GTGGCCAACTCGTTTCACG 59.721 57.895 7.24 0.00 44.19 4.35
598 599 1.652563 GGTGGCCAACTCGTTTCAC 59.347 57.895 15.48 0.00 0.00 3.18
599 600 1.527380 GGGTGGCCAACTCGTTTCA 60.527 57.895 22.79 0.00 0.00 2.69
600 601 1.104577 TTGGGTGGCCAACTCGTTTC 61.105 55.000 22.79 2.62 28.32 2.78
601 602 0.469144 ATTGGGTGGCCAACTCGTTT 60.469 50.000 22.79 0.00 32.21 3.60
602 603 0.893727 GATTGGGTGGCCAACTCGTT 60.894 55.000 22.79 2.95 32.21 3.85
603 604 1.303317 GATTGGGTGGCCAACTCGT 60.303 57.895 22.79 6.38 32.21 4.18
604 605 2.398554 CGATTGGGTGGCCAACTCG 61.399 63.158 22.79 18.70 32.21 4.18
605 606 0.394352 ATCGATTGGGTGGCCAACTC 60.394 55.000 22.79 9.83 32.21 3.01
606 607 0.680921 CATCGATTGGGTGGCCAACT 60.681 55.000 22.79 0.00 32.21 3.16
607 608 0.679640 TCATCGATTGGGTGGCCAAC 60.680 55.000 14.15 14.15 32.21 3.77
608 609 0.038890 TTCATCGATTGGGTGGCCAA 59.961 50.000 7.24 0.00 0.00 4.52
609 610 0.038890 TTTCATCGATTGGGTGGCCA 59.961 50.000 0.00 0.00 0.00 5.36
610 611 0.740737 CTTTCATCGATTGGGTGGCC 59.259 55.000 0.00 0.00 0.00 5.36
611 612 1.750193 TCTTTCATCGATTGGGTGGC 58.250 50.000 0.00 0.00 0.00 5.01
612 613 3.119495 GGTTTCTTTCATCGATTGGGTGG 60.119 47.826 0.00 0.00 0.00 4.61
613 614 3.119495 GGGTTTCTTTCATCGATTGGGTG 60.119 47.826 0.00 0.00 0.00 4.61
614 615 3.089284 GGGTTTCTTTCATCGATTGGGT 58.911 45.455 0.00 0.00 0.00 4.51
615 616 3.356290 AGGGTTTCTTTCATCGATTGGG 58.644 45.455 0.00 0.00 0.00 4.12
616 617 4.035675 GCTAGGGTTTCTTTCATCGATTGG 59.964 45.833 0.00 0.00 0.00 3.16
617 618 4.878397 AGCTAGGGTTTCTTTCATCGATTG 59.122 41.667 0.00 0.00 0.00 2.67
618 619 4.878397 CAGCTAGGGTTTCTTTCATCGATT 59.122 41.667 0.00 0.00 0.00 3.34
619 620 4.080863 ACAGCTAGGGTTTCTTTCATCGAT 60.081 41.667 0.00 0.00 0.00 3.59
620 621 3.260884 ACAGCTAGGGTTTCTTTCATCGA 59.739 43.478 0.00 0.00 0.00 3.59
621 622 3.372206 CACAGCTAGGGTTTCTTTCATCG 59.628 47.826 0.00 0.00 0.00 3.84
622 623 4.327680 ACACAGCTAGGGTTTCTTTCATC 58.672 43.478 0.00 0.00 0.00 2.92
623 624 4.373156 ACACAGCTAGGGTTTCTTTCAT 57.627 40.909 0.00 0.00 0.00 2.57
624 625 3.857157 ACACAGCTAGGGTTTCTTTCA 57.143 42.857 0.00 0.00 0.00 2.69
632 633 3.197983 GTGATAGGAAACACAGCTAGGGT 59.802 47.826 0.00 0.00 37.05 4.34
633 634 3.197766 TGTGATAGGAAACACAGCTAGGG 59.802 47.826 0.00 0.00 41.19 3.53
634 635 4.184629 GTGTGATAGGAAACACAGCTAGG 58.815 47.826 0.00 0.00 45.53 3.02
635 636 3.859961 CGTGTGATAGGAAACACAGCTAG 59.140 47.826 0.00 0.00 45.61 3.42
636 637 3.508402 TCGTGTGATAGGAAACACAGCTA 59.492 43.478 0.00 0.00 45.61 3.32
637 638 2.299013 TCGTGTGATAGGAAACACAGCT 59.701 45.455 0.00 0.00 45.61 4.24
638 639 2.668457 CTCGTGTGATAGGAAACACAGC 59.332 50.000 0.00 0.00 45.61 4.40
639 640 3.914312 ACTCGTGTGATAGGAAACACAG 58.086 45.455 0.00 5.62 45.61 3.66
640 641 4.055360 CAACTCGTGTGATAGGAAACACA 58.945 43.478 6.73 0.00 45.61 3.72
641 642 4.056050 ACAACTCGTGTGATAGGAAACAC 58.944 43.478 0.00 0.00 39.72 3.32
642 643 4.330944 ACAACTCGTGTGATAGGAAACA 57.669 40.909 0.00 0.00 39.72 2.83
653 654 4.504858 AGTTTTCTTCTCACAACTCGTGT 58.495 39.130 0.00 0.00 46.44 4.49
654 655 4.566759 TGAGTTTTCTTCTCACAACTCGTG 59.433 41.667 6.45 0.00 45.49 4.35
655 656 4.755411 TGAGTTTTCTTCTCACAACTCGT 58.245 39.130 6.45 0.00 45.49 4.18
656 657 5.914085 ATGAGTTTTCTTCTCACAACTCG 57.086 39.130 6.45 0.00 45.49 4.18
657 658 9.818796 GAATAATGAGTTTTCTTCTCACAACTC 57.181 33.333 4.31 4.31 43.32 3.01
658 659 9.566432 AGAATAATGAGTTTTCTTCTCACAACT 57.434 29.630 0.00 0.00 43.32 3.16
678 679 9.516546 ACCGTATGTCATCATCTAGTAGAATAA 57.483 33.333 3.45 0.00 35.70 1.40
679 680 9.163899 GACCGTATGTCATCATCTAGTAGAATA 57.836 37.037 3.45 0.00 43.85 1.75
680 681 7.148390 CGACCGTATGTCATCATCTAGTAGAAT 60.148 40.741 3.45 0.00 44.71 2.40
681 682 6.147328 CGACCGTATGTCATCATCTAGTAGAA 59.853 42.308 3.45 0.00 44.71 2.10
682 683 5.638234 CGACCGTATGTCATCATCTAGTAGA 59.362 44.000 1.45 1.45 44.71 2.59
683 684 5.408909 ACGACCGTATGTCATCATCTAGTAG 59.591 44.000 0.00 0.00 44.71 2.57
684 685 5.303165 ACGACCGTATGTCATCATCTAGTA 58.697 41.667 0.00 0.00 44.71 1.82
685 686 4.135306 ACGACCGTATGTCATCATCTAGT 58.865 43.478 0.00 0.00 44.71 2.57
686 687 4.750952 ACGACCGTATGTCATCATCTAG 57.249 45.455 0.00 0.00 44.71 2.43
687 688 4.319261 CGAACGACCGTATGTCATCATCTA 60.319 45.833 0.00 0.00 44.71 1.98
688 689 3.548214 CGAACGACCGTATGTCATCATCT 60.548 47.826 0.00 0.00 44.71 2.90
689 690 2.719556 CGAACGACCGTATGTCATCATC 59.280 50.000 0.00 0.00 44.71 2.92
690 691 2.356695 TCGAACGACCGTATGTCATCAT 59.643 45.455 0.00 0.00 44.71 2.45
691 692 1.738908 TCGAACGACCGTATGTCATCA 59.261 47.619 0.00 0.00 44.71 3.07
692 693 2.463553 TCGAACGACCGTATGTCATC 57.536 50.000 0.00 0.00 44.71 2.92
693 694 3.431922 AATCGAACGACCGTATGTCAT 57.568 42.857 0.00 0.00 44.71 3.06
694 695 2.925578 AATCGAACGACCGTATGTCA 57.074 45.000 0.00 0.00 44.71 3.58
695 696 5.210715 AGATTAATCGAACGACCGTATGTC 58.789 41.667 9.78 0.00 40.81 3.06
696 697 5.179045 AGATTAATCGAACGACCGTATGT 57.821 39.130 9.78 0.00 0.00 2.29
697 698 6.854892 AGTAAGATTAATCGAACGACCGTATG 59.145 38.462 9.78 0.00 0.00 2.39
698 699 6.963796 AGTAAGATTAATCGAACGACCGTAT 58.036 36.000 9.78 0.00 0.00 3.06
699 700 6.363577 AGTAAGATTAATCGAACGACCGTA 57.636 37.500 9.78 0.00 0.00 4.02
700 701 5.240713 AGTAAGATTAATCGAACGACCGT 57.759 39.130 9.78 0.00 0.00 4.83
701 702 4.674211 GGAGTAAGATTAATCGAACGACCG 59.326 45.833 9.78 0.00 0.00 4.79
702 703 4.981054 GGGAGTAAGATTAATCGAACGACC 59.019 45.833 20.21 20.21 0.00 4.79
703 704 5.829829 AGGGAGTAAGATTAATCGAACGAC 58.170 41.667 9.78 10.65 0.00 4.34
704 705 5.009410 GGAGGGAGTAAGATTAATCGAACGA 59.991 44.000 9.78 0.00 0.00 3.85
705 706 5.221130 GGAGGGAGTAAGATTAATCGAACG 58.779 45.833 9.78 0.00 0.00 3.95
706 707 5.221130 CGGAGGGAGTAAGATTAATCGAAC 58.779 45.833 9.78 11.46 0.00 3.95
707 708 4.261909 GCGGAGGGAGTAAGATTAATCGAA 60.262 45.833 9.78 0.00 0.00 3.71
708 709 3.255149 GCGGAGGGAGTAAGATTAATCGA 59.745 47.826 9.78 0.00 0.00 3.59
709 710 3.005472 TGCGGAGGGAGTAAGATTAATCG 59.995 47.826 9.78 0.00 0.00 3.34
710 711 4.602340 TGCGGAGGGAGTAAGATTAATC 57.398 45.455 7.41 7.41 0.00 1.75
711 712 4.593206 TGATGCGGAGGGAGTAAGATTAAT 59.407 41.667 0.00 0.00 0.00 1.40
712 713 3.964688 TGATGCGGAGGGAGTAAGATTAA 59.035 43.478 0.00 0.00 0.00 1.40
713 714 3.572642 TGATGCGGAGGGAGTAAGATTA 58.427 45.455 0.00 0.00 0.00 1.75
714 715 2.398588 TGATGCGGAGGGAGTAAGATT 58.601 47.619 0.00 0.00 0.00 2.40
715 716 2.088104 TGATGCGGAGGGAGTAAGAT 57.912 50.000 0.00 0.00 0.00 2.40
716 717 2.088104 ATGATGCGGAGGGAGTAAGA 57.912 50.000 0.00 0.00 0.00 2.10
717 718 4.202264 ACTTTATGATGCGGAGGGAGTAAG 60.202 45.833 0.00 0.00 0.00 2.34
718 719 3.709653 ACTTTATGATGCGGAGGGAGTAA 59.290 43.478 0.00 0.00 0.00 2.24
719 720 3.069586 CACTTTATGATGCGGAGGGAGTA 59.930 47.826 0.00 0.00 0.00 2.59
720 721 2.119495 ACTTTATGATGCGGAGGGAGT 58.881 47.619 0.00 0.00 0.00 3.85
721 722 2.103094 TCACTTTATGATGCGGAGGGAG 59.897 50.000 0.00 0.00 29.99 4.30
722 723 2.115427 TCACTTTATGATGCGGAGGGA 58.885 47.619 0.00 0.00 29.99 4.20
723 724 2.620251 TCACTTTATGATGCGGAGGG 57.380 50.000 0.00 0.00 29.99 4.30
737 738 1.337447 GGCATGTGCAAAGCATCACTT 60.337 47.619 7.36 0.00 41.91 3.16
738 739 0.245539 GGCATGTGCAAAGCATCACT 59.754 50.000 7.36 0.00 41.91 3.41
739 740 0.245539 AGGCATGTGCAAAGCATCAC 59.754 50.000 7.36 0.00 41.91 3.06
740 741 0.970640 AAGGCATGTGCAAAGCATCA 59.029 45.000 7.36 0.00 41.91 3.07
741 742 1.067425 TGAAGGCATGTGCAAAGCATC 60.067 47.619 7.36 6.52 41.91 3.91
742 743 0.970640 TGAAGGCATGTGCAAAGCAT 59.029 45.000 7.36 0.00 41.91 3.79
743 744 0.315886 CTGAAGGCATGTGCAAAGCA 59.684 50.000 7.36 0.00 44.36 3.91
744 745 0.316204 ACTGAAGGCATGTGCAAAGC 59.684 50.000 7.36 0.00 44.36 3.51
745 746 1.610038 TGACTGAAGGCATGTGCAAAG 59.390 47.619 7.36 1.34 44.36 2.77
746 747 1.689984 TGACTGAAGGCATGTGCAAA 58.310 45.000 7.36 0.00 44.36 3.68
747 748 1.913778 ATGACTGAAGGCATGTGCAA 58.086 45.000 7.36 0.00 44.36 4.08
748 749 2.785540 TATGACTGAAGGCATGTGCA 57.214 45.000 8.99 0.00 44.36 4.57
749 750 3.881688 AGATTATGACTGAAGGCATGTGC 59.118 43.478 8.99 0.00 41.14 4.57
750 751 7.558161 TTAAGATTATGACTGAAGGCATGTG 57.442 36.000 8.99 0.00 0.00 3.21
751 752 8.757982 ATTTAAGATTATGACTGAAGGCATGT 57.242 30.769 8.99 0.00 0.00 3.21
752 753 9.064706 AGATTTAAGATTATGACTGAAGGCATG 57.935 33.333 8.99 0.00 0.00 4.06
753 754 9.638176 AAGATTTAAGATTATGACTGAAGGCAT 57.362 29.630 3.71 3.71 0.00 4.40
754 755 8.896744 CAAGATTTAAGATTATGACTGAAGGCA 58.103 33.333 0.00 0.00 0.00 4.75
755 756 9.113838 TCAAGATTTAAGATTATGACTGAAGGC 57.886 33.333 0.00 0.00 0.00 4.35
856 857 9.778741 TCCTATATTTTTCTATCACGCAAAGAT 57.221 29.630 0.00 0.00 0.00 2.40
857 858 9.261180 CTCCTATATTTTTCTATCACGCAAAGA 57.739 33.333 0.00 0.00 0.00 2.52
858 859 9.046296 ACTCCTATATTTTTCTATCACGCAAAG 57.954 33.333 0.00 0.00 0.00 2.77
859 860 8.826710 CACTCCTATATTTTTCTATCACGCAAA 58.173 33.333 0.00 0.00 0.00 3.68
860 861 7.441157 CCACTCCTATATTTTTCTATCACGCAA 59.559 37.037 0.00 0.00 0.00 4.85
861 862 6.929049 CCACTCCTATATTTTTCTATCACGCA 59.071 38.462 0.00 0.00 0.00 5.24
862 863 6.929606 ACCACTCCTATATTTTTCTATCACGC 59.070 38.462 0.00 0.00 0.00 5.34
863 864 9.627395 CTACCACTCCTATATTTTTCTATCACG 57.373 37.037 0.00 0.00 0.00 4.35
875 876 9.908747 GACTGTCATATACTACCACTCCTATAT 57.091 37.037 2.24 0.00 0.00 0.86
876 877 9.113797 AGACTGTCATATACTACCACTCCTATA 57.886 37.037 10.88 0.00 0.00 1.31
877 878 7.885922 CAGACTGTCATATACTACCACTCCTAT 59.114 40.741 10.88 0.00 0.00 2.57
878 879 7.072076 TCAGACTGTCATATACTACCACTCCTA 59.928 40.741 10.88 0.00 0.00 2.94
879 880 6.065374 CAGACTGTCATATACTACCACTCCT 58.935 44.000 10.88 0.00 0.00 3.69
880 881 6.062749 TCAGACTGTCATATACTACCACTCC 58.937 44.000 10.88 0.00 0.00 3.85
881 882 7.663905 AGATCAGACTGTCATATACTACCACTC 59.336 40.741 10.88 0.00 0.00 3.51
882 883 7.446931 CAGATCAGACTGTCATATACTACCACT 59.553 40.741 10.88 0.00 33.73 4.00
883 884 7.589395 CAGATCAGACTGTCATATACTACCAC 58.411 42.308 10.88 0.00 33.73 4.16
884 885 6.207614 GCAGATCAGACTGTCATATACTACCA 59.792 42.308 10.88 0.00 39.73 3.25
885 886 6.349777 GGCAGATCAGACTGTCATATACTACC 60.350 46.154 10.88 3.63 41.46 3.18
886 887 6.432783 AGGCAGATCAGACTGTCATATACTAC 59.567 42.308 10.88 0.00 43.86 2.73
887 888 6.547402 AGGCAGATCAGACTGTCATATACTA 58.453 40.000 10.88 0.00 43.86 1.82
888 889 5.392995 AGGCAGATCAGACTGTCATATACT 58.607 41.667 10.88 0.23 43.86 2.12
889 890 5.336372 GGAGGCAGATCAGACTGTCATATAC 60.336 48.000 10.88 0.00 43.86 1.47
890 891 4.769488 GGAGGCAGATCAGACTGTCATATA 59.231 45.833 10.88 0.00 43.86 0.86
891 892 3.577848 GGAGGCAGATCAGACTGTCATAT 59.422 47.826 10.88 2.61 43.86 1.78
892 893 2.961741 GGAGGCAGATCAGACTGTCATA 59.038 50.000 10.88 0.00 43.86 2.15
893 894 1.761784 GGAGGCAGATCAGACTGTCAT 59.238 52.381 10.88 0.00 43.86 3.06
894 895 1.189752 GGAGGCAGATCAGACTGTCA 58.810 55.000 10.88 0.00 43.86 3.58
895 896 1.136695 CTGGAGGCAGATCAGACTGTC 59.863 57.143 0.00 0.00 42.05 3.51
896 897 1.193323 CTGGAGGCAGATCAGACTGT 58.807 55.000 0.00 0.00 39.73 3.55
897 898 1.482954 TCTGGAGGCAGATCAGACTG 58.517 55.000 0.00 0.00 40.43 3.51
898 899 2.109774 CTTCTGGAGGCAGATCAGACT 58.890 52.381 0.00 0.00 37.28 3.24
899 900 1.473080 GCTTCTGGAGGCAGATCAGAC 60.473 57.143 0.00 0.00 37.28 3.51
900 901 0.829333 GCTTCTGGAGGCAGATCAGA 59.171 55.000 0.00 0.00 35.95 3.27
901 902 0.540454 TGCTTCTGGAGGCAGATCAG 59.460 55.000 3.29 0.00 38.55 2.90
902 903 0.986527 TTGCTTCTGGAGGCAGATCA 59.013 50.000 7.40 0.00 44.27 2.92
903 904 2.015587 CTTTGCTTCTGGAGGCAGATC 58.984 52.381 7.40 0.00 44.27 2.75
904 905 1.954258 GCTTTGCTTCTGGAGGCAGAT 60.954 52.381 7.40 0.00 44.27 2.90
905 906 0.607489 GCTTTGCTTCTGGAGGCAGA 60.607 55.000 7.40 3.09 44.27 4.26
906 907 0.892358 TGCTTTGCTTCTGGAGGCAG 60.892 55.000 7.40 0.00 44.27 4.85
907 908 0.467844 TTGCTTTGCTTCTGGAGGCA 60.468 50.000 3.29 3.29 41.84 4.75
908 909 0.243095 CTTGCTTTGCTTCTGGAGGC 59.757 55.000 0.00 0.00 0.00 4.70
909 910 0.243095 GCTTGCTTTGCTTCTGGAGG 59.757 55.000 0.00 0.00 0.00 4.30
910 911 1.245732 AGCTTGCTTTGCTTCTGGAG 58.754 50.000 0.00 0.00 37.52 3.86
911 912 2.566833 TAGCTTGCTTTGCTTCTGGA 57.433 45.000 0.00 0.00 41.46 3.86
912 913 3.243002 GCTATAGCTTGCTTTGCTTCTGG 60.243 47.826 17.75 0.00 41.46 3.86
913 914 3.376234 TGCTATAGCTTGCTTTGCTTCTG 59.624 43.478 24.61 0.00 41.46 3.02
914 915 3.614092 TGCTATAGCTTGCTTTGCTTCT 58.386 40.909 24.61 0.00 41.46 2.85
915 916 3.376546 ACTGCTATAGCTTGCTTTGCTTC 59.623 43.478 24.61 0.00 41.46 3.86
916 917 3.350833 ACTGCTATAGCTTGCTTTGCTT 58.649 40.909 24.61 0.00 41.46 3.91
917 918 2.941720 GACTGCTATAGCTTGCTTTGCT 59.058 45.455 24.61 2.15 43.79 3.91
918 919 2.032675 GGACTGCTATAGCTTGCTTTGC 59.967 50.000 24.61 5.19 42.66 3.68
919 920 3.273434 TGGACTGCTATAGCTTGCTTTG 58.727 45.455 24.61 9.01 42.66 2.77
920 921 3.054802 ACTGGACTGCTATAGCTTGCTTT 60.055 43.478 24.61 6.45 42.66 3.51
921 922 2.503356 ACTGGACTGCTATAGCTTGCTT 59.497 45.455 24.61 5.20 42.66 3.91
922 923 2.102252 GACTGGACTGCTATAGCTTGCT 59.898 50.000 24.61 5.14 42.66 3.91
923 924 2.478831 GACTGGACTGCTATAGCTTGC 58.521 52.381 24.61 16.72 42.66 4.01
924 925 2.432146 TGGACTGGACTGCTATAGCTTG 59.568 50.000 24.61 18.67 42.66 4.01
925 926 2.697751 CTGGACTGGACTGCTATAGCTT 59.302 50.000 24.61 12.27 42.66 3.74
926 927 2.315176 CTGGACTGGACTGCTATAGCT 58.685 52.381 24.61 6.22 42.66 3.32
927 928 2.035632 ACTGGACTGGACTGCTATAGC 58.964 52.381 18.18 18.18 42.50 2.97
928 929 3.251245 CGTACTGGACTGGACTGCTATAG 59.749 52.174 0.00 0.00 0.00 1.31
929 930 3.211865 CGTACTGGACTGGACTGCTATA 58.788 50.000 0.00 0.00 0.00 1.31
930 931 2.025155 CGTACTGGACTGGACTGCTAT 58.975 52.381 0.00 0.00 0.00 2.97
931 932 1.460504 CGTACTGGACTGGACTGCTA 58.539 55.000 0.00 0.00 0.00 3.49
932 933 1.878656 GCGTACTGGACTGGACTGCT 61.879 60.000 0.00 0.00 0.00 4.24
933 934 1.446272 GCGTACTGGACTGGACTGC 60.446 63.158 0.00 0.00 0.00 4.40
934 935 1.154016 CGCGTACTGGACTGGACTG 60.154 63.158 0.00 0.00 0.00 3.51
935 936 2.991076 GCGCGTACTGGACTGGACT 61.991 63.158 8.43 0.00 0.00 3.85
936 937 2.506438 GCGCGTACTGGACTGGAC 60.506 66.667 8.43 0.00 0.00 4.02
937 938 2.986979 TGCGCGTACTGGACTGGA 60.987 61.111 8.43 0.00 0.00 3.86
938 939 2.809601 GTGCGCGTACTGGACTGG 60.810 66.667 20.55 0.00 0.00 4.00
939 940 2.049526 TGTGCGCGTACTGGACTG 60.050 61.111 27.18 0.00 0.00 3.51
940 941 2.201436 CTCTGTGCGCGTACTGGACT 62.201 60.000 27.97 0.00 0.00 3.85
941 942 1.801913 CTCTGTGCGCGTACTGGAC 60.802 63.158 27.97 4.69 0.00 4.02
942 943 2.566529 CTCTGTGCGCGTACTGGA 59.433 61.111 27.97 22.60 0.00 3.86
943 944 3.181967 GCTCTGTGCGCGTACTGG 61.182 66.667 27.97 20.64 0.00 4.00
944 945 3.181967 GGCTCTGTGCGCGTACTG 61.182 66.667 27.18 25.64 44.05 2.74
945 946 4.436998 GGGCTCTGTGCGCGTACT 62.437 66.667 27.18 0.00 44.49 2.73
975 976 3.141488 GAGAAGGAGGAGCGGCGA 61.141 66.667 12.98 0.00 0.00 5.54
1026 1027 1.228894 AGTGAAGGAGGAGGTGCGA 60.229 57.895 0.00 0.00 0.00 5.10
1029 1030 0.545309 TGGGAGTGAAGGAGGAGGTG 60.545 60.000 0.00 0.00 0.00 4.00
1030 1031 0.545548 GTGGGAGTGAAGGAGGAGGT 60.546 60.000 0.00 0.00 0.00 3.85
1031 1032 1.268283 GGTGGGAGTGAAGGAGGAGG 61.268 65.000 0.00 0.00 0.00 4.30
1032 1033 0.252467 AGGTGGGAGTGAAGGAGGAG 60.252 60.000 0.00 0.00 0.00 3.69
1127 1146 2.978010 GGTGTGCGTCTTGTGGGG 60.978 66.667 0.00 0.00 0.00 4.96
1131 1150 1.523711 CAGGTGGTGTGCGTCTTGT 60.524 57.895 0.00 0.00 0.00 3.16
1425 1456 0.604073 TGGCGACGACCTCATTTGTA 59.396 50.000 0.00 0.00 0.00 2.41
1569 1606 2.930887 GCTCCTGCTGTCGTCACATAAA 60.931 50.000 0.00 0.00 36.03 1.40
1578 1615 3.889134 TTGCTGGCTCCTGCTGTCG 62.889 63.158 16.81 0.00 40.75 4.35
1634 1677 4.796495 GAACGCCGGGGGAGCAAT 62.796 66.667 23.83 0.00 0.00 3.56
1662 1711 1.741770 GAAGCCGTGGATGAGCGTT 60.742 57.895 0.00 0.00 0.00 4.84
1666 1715 2.939103 CCTTAAAGAAGCCGTGGATGAG 59.061 50.000 0.00 0.00 0.00 2.90
2213 2262 6.196918 TCATAGCTTCATCCATCATTCCTT 57.803 37.500 0.00 0.00 0.00 3.36
2236 2285 7.001674 TGTCCCCGCATTTTATTAAGTATGAT 58.998 34.615 0.00 0.00 0.00 2.45
2246 2295 2.025321 AGTCCTTGTCCCCGCATTTTAT 60.025 45.455 0.00 0.00 0.00 1.40
2248 2297 0.112412 AGTCCTTGTCCCCGCATTTT 59.888 50.000 0.00 0.00 0.00 1.82
2315 2364 2.684927 GCATCAGCCAGTCTACCCATTT 60.685 50.000 0.00 0.00 33.58 2.32
2325 2374 1.806496 TACCCATAGCATCAGCCAGT 58.194 50.000 0.00 0.00 43.56 4.00
2342 2391 6.758886 CCTACCAATCATCTGACTGAACTTAC 59.241 42.308 0.00 0.00 0.00 2.34
2366 2418 0.393820 TGTGTTCGGTTGTACTCCCC 59.606 55.000 0.00 0.00 0.00 4.81
2429 2481 5.046231 ACCAACTCCTTTGCTTTTACCAAAA 60.046 36.000 0.00 0.00 33.34 2.44
2436 2488 6.478512 TCATTAACCAACTCCTTTGCTTTT 57.521 33.333 0.00 0.00 33.34 2.27
2442 2494 8.421249 TCATCATTTCATTAACCAACTCCTTT 57.579 30.769 0.00 0.00 0.00 3.11
2519 2571 2.582636 ACCCTTCCTTCATTGCATAGGT 59.417 45.455 0.00 0.00 0.00 3.08
2697 2749 7.008901 ACAAGTGTGTTATACGTAATGACATCG 59.991 37.037 0.00 0.00 36.57 3.84
2733 2785 7.415989 CCATCATCAATCCTTCCACTTTTACAG 60.416 40.741 0.00 0.00 0.00 2.74
2784 2839 7.610305 ACAGTTGTAGGTTTAACTTCCATATGG 59.390 37.037 16.25 16.25 35.08 2.74
2789 2844 7.337167 TGTAACAGTTGTAGGTTTAACTTCCA 58.663 34.615 0.00 0.00 35.08 3.53
2932 2987 8.897752 GCAATCATTTCTACAAAGTCCTCTAAT 58.102 33.333 0.00 0.00 0.00 1.73
3289 3345 8.506168 TTCCCATCAACTTTAGACATGTATTC 57.494 34.615 0.00 0.00 0.00 1.75
3431 3487 2.094390 CCAAGTCCAGTGCATCAAATGG 60.094 50.000 0.00 0.00 0.00 3.16
3499 3565 1.550524 AGCGCATGGAAGAGACACTTA 59.449 47.619 11.47 0.00 39.13 2.24
3522 3589 2.356432 CCATCACCCAGCTCAATCTTCA 60.356 50.000 0.00 0.00 0.00 3.02
3523 3590 2.295885 CCATCACCCAGCTCAATCTTC 58.704 52.381 0.00 0.00 0.00 2.87
3579 3659 1.598962 CCCATAGGATGCACGCCTG 60.599 63.158 17.87 5.25 36.96 4.85
3620 3707 1.484240 AGTCAGCCCTTGCATAGAGAC 59.516 52.381 0.00 0.00 41.13 3.36
3733 3826 9.081200 AGAGAACTCGAAATAGCCTGATACAGG 62.081 44.444 12.78 12.78 43.53 4.00
3760 3853 4.063998 TGCACTAGATATGCTCAGGTTG 57.936 45.455 0.00 0.00 43.77 3.77
3823 3925 9.005777 AGAAAACCAAATAGCTTGATAACGTAA 57.994 29.630 0.00 0.00 37.17 3.18
3913 4033 4.840772 CACGTTTCAATAGCTCGAGTTTTG 59.159 41.667 15.13 14.56 0.00 2.44
3920 4040 6.416750 TCATATACACACGTTTCAATAGCTCG 59.583 38.462 0.00 0.00 0.00 5.03
3944 4064 6.093357 GGAGATTGAATGAAGGTTCAGAGTTC 59.907 42.308 0.00 0.00 41.08 3.01
4050 4176 9.927668 ACTAAAGCTGTATACAAAAATGCAAAT 57.072 25.926 14.34 4.86 0.00 2.32
4119 4250 3.582780 ACGGTAGTGCTACAACTAAAGC 58.417 45.455 10.98 0.00 37.78 3.51
4166 4297 4.944317 ACAGGCTTTATAAAAGAGTCCAGC 59.056 41.667 3.63 0.00 0.00 4.85
4167 4298 5.940470 ACACAGGCTTTATAAAAGAGTCCAG 59.060 40.000 3.63 0.00 0.00 3.86
4196 4328 5.888161 GCATAGGAATTTGAAGGAAAGAGGA 59.112 40.000 0.00 0.00 0.00 3.71
4271 4405 5.576447 TTTGAAAAACTCAACCTCACCTC 57.424 39.130 0.00 0.00 43.90 3.85
4272 4406 5.993748 TTTTGAAAAACTCAACCTCACCT 57.006 34.783 0.00 0.00 43.90 4.00
4273 4407 5.929415 TGTTTTTGAAAAACTCAACCTCACC 59.071 36.000 27.49 4.24 43.90 4.02
4275 4409 5.637387 GCTGTTTTTGAAAAACTCAACCTCA 59.363 36.000 27.49 9.60 43.90 3.86
4276 4410 5.063438 GGCTGTTTTTGAAAAACTCAACCTC 59.937 40.000 27.49 12.42 43.90 3.85
4277 4411 4.935205 GGCTGTTTTTGAAAAACTCAACCT 59.065 37.500 27.49 0.00 43.90 3.50
4278 4412 4.201676 CGGCTGTTTTTGAAAAACTCAACC 60.202 41.667 27.49 21.59 43.90 3.77
4287 4422 1.590259 GCGGCGGCTGTTTTTGAAA 60.590 52.632 9.78 0.00 35.83 2.69
4300 4435 0.801836 GAAATGGGTTCATTGCGGCG 60.802 55.000 0.51 0.51 42.29 6.46
4306 4441 4.960469 AGATCATGCAGAAATGGGTTCATT 59.040 37.500 0.00 0.00 44.77 2.57
4326 4461 3.019564 CCCGGCTTCTTTCAATTCAGAT 58.980 45.455 0.00 0.00 0.00 2.90
4334 4469 0.908910 TGATAGCCCGGCTTCTTTCA 59.091 50.000 19.35 12.82 40.44 2.69
4345 4480 2.165998 GGCCAATGAATCTGATAGCCC 58.834 52.381 0.00 0.00 32.93 5.19
4376 4512 3.008517 TCAGGGAGCGGATTGGCA 61.009 61.111 0.00 0.00 34.64 4.92
4383 4519 1.153289 CCATCAACTCAGGGAGCGG 60.153 63.158 0.00 0.00 32.04 5.52
4390 4526 6.600822 AGGAATTTACATGACCATCAACTCAG 59.399 38.462 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.