Multiple sequence alignment - TraesCS1D01G068000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G068000 chr1D 100.000 3866 0 0 1 3866 49625476 49621611 0.000000e+00 7140.0
1 TraesCS1D01G068000 chr1D 88.526 2083 194 21 1000 3078 73818436 73816395 0.000000e+00 2481.0
2 TraesCS1D01G068000 chr1D 88.320 2089 213 16 1000 3084 73972584 73970523 0.000000e+00 2477.0
3 TraesCS1D01G068000 chr1D 90.270 185 15 2 816 1000 440716463 440716644 4.990000e-59 239.0
4 TraesCS1D01G068000 chr1D 92.208 154 10 2 3440 3593 73816391 73816240 2.340000e-52 217.0
5 TraesCS1D01G068000 chr1D 85.638 188 14 6 3440 3615 73970530 73970344 6.600000e-43 185.0
6 TraesCS1D01G068000 chr1A 92.739 3388 133 34 176 3521 49254205 49250889 0.000000e+00 4789.0
7 TraesCS1D01G068000 chr1A 87.941 1020 109 10 1981 2998 73338366 73337359 0.000000e+00 1190.0
8 TraesCS1D01G068000 chr1A 89.914 932 78 5 1000 1929 73345644 73344727 0.000000e+00 1186.0
9 TraesCS1D01G068000 chr1A 96.364 165 5 1 3478 3641 49250887 49250723 1.770000e-68 270.0
10 TraesCS1D01G068000 chr1A 90.811 185 14 3 816 1000 6333224 6333043 1.070000e-60 244.0
11 TraesCS1D01G068000 chr1A 92.523 107 7 1 3761 3866 49250721 49250615 6.690000e-33 152.0
12 TraesCS1D01G068000 chr1B 93.263 3132 144 30 346 3459 70193854 70190772 0.000000e+00 4553.0
13 TraesCS1D01G068000 chr1B 92.208 154 10 2 3440 3593 117281728 117281577 2.340000e-52 217.0
14 TraesCS1D01G068000 chr1B 81.679 262 35 7 2825 3084 117281971 117281721 5.060000e-49 206.0
15 TraesCS1D01G068000 chr7A 84.696 477 61 5 1052 1524 681489338 681488870 2.100000e-127 466.0
16 TraesCS1D01G068000 chr7A 76.456 395 60 19 370 749 112281802 112282178 2.370000e-42 183.0
17 TraesCS1D01G068000 chr7A 84.286 70 5 5 374 437 610087887 610087818 3.220000e-06 63.9
18 TraesCS1D01G068000 chr3D 90.811 185 14 3 816 1000 581062155 581062336 1.070000e-60 244.0
19 TraesCS1D01G068000 chr3D 97.273 110 3 0 1 110 204745647 204745538 1.830000e-43 187.0
20 TraesCS1D01G068000 chr3D 73.356 289 47 17 374 637 581060890 581061173 3.200000e-11 80.5
21 TraesCS1D01G068000 chr3D 97.368 38 1 0 712 749 613629472 613629509 8.970000e-07 65.8
22 TraesCS1D01G068000 chr3B 90.811 185 12 2 816 1000 2395829 2396008 3.860000e-60 243.0
23 TraesCS1D01G068000 chr4B 89.730 185 18 1 816 1000 235397045 235397228 6.460000e-58 235.0
24 TraesCS1D01G068000 chr4B 88.288 111 8 3 528 637 235396099 235396205 1.130000e-25 128.0
25 TraesCS1D01G068000 chr4B 89.062 64 6 1 371 434 166788526 166788464 1.150000e-10 78.7
26 TraesCS1D01G068000 chr6B 89.785 186 14 5 816 1001 663858706 663858886 2.320000e-57 233.0
27 TraesCS1D01G068000 chr6B 89.730 185 16 3 816 1000 692606942 692606761 2.320000e-57 233.0
28 TraesCS1D01G068000 chr6B 75.814 215 36 11 371 582 99076057 99076258 1.140000e-15 95.3
29 TraesCS1D01G068000 chr7D 82.895 228 27 7 512 738 92565144 92564928 1.100000e-45 195.0
30 TraesCS1D01G068000 chr7D 97.273 110 3 0 1 110 621759187 621759296 1.830000e-43 187.0
31 TraesCS1D01G068000 chr6D 98.182 110 2 0 1 110 126427897 126428006 3.940000e-45 193.0
32 TraesCS1D01G068000 chr6D 97.297 111 3 0 1 111 147646594 147646484 5.100000e-44 189.0
33 TraesCS1D01G068000 chr6D 85.185 108 11 4 528 634 69926841 69926738 5.280000e-19 106.0
34 TraesCS1D01G068000 chr5D 98.182 110 1 1 1 110 22457052 22456944 1.420000e-44 191.0
35 TraesCS1D01G068000 chr5D 97.297 111 3 0 1 111 390366707 390366817 5.100000e-44 189.0
36 TraesCS1D01G068000 chr5D 97.273 110 3 0 1 110 498436068 498435959 1.830000e-43 187.0
37 TraesCS1D01G068000 chr5D 93.443 122 7 1 1 122 519339113 519339233 3.070000e-41 180.0
38 TraesCS1D01G068000 chr6A 91.473 129 10 1 1 129 592700382 592700255 3.970000e-40 176.0
39 TraesCS1D01G068000 chr4D 81.897 232 21 10 528 749 258908481 258908701 3.970000e-40 176.0
40 TraesCS1D01G068000 chr7B 87.931 58 6 1 372 429 93489447 93489391 2.490000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G068000 chr1D 49621611 49625476 3865 True 7140 7140 100.000000 1 3866 1 chr1D.!!$R1 3865
1 TraesCS1D01G068000 chr1D 73816240 73818436 2196 True 1349 2481 90.367000 1000 3593 2 chr1D.!!$R2 2593
2 TraesCS1D01G068000 chr1D 73970344 73972584 2240 True 1331 2477 86.979000 1000 3615 2 chr1D.!!$R3 2615
3 TraesCS1D01G068000 chr1A 49250615 49254205 3590 True 1737 4789 93.875333 176 3866 3 chr1A.!!$R4 3690
4 TraesCS1D01G068000 chr1A 73337359 73338366 1007 True 1190 1190 87.941000 1981 2998 1 chr1A.!!$R2 1017
5 TraesCS1D01G068000 chr1A 73344727 73345644 917 True 1186 1186 89.914000 1000 1929 1 chr1A.!!$R3 929
6 TraesCS1D01G068000 chr1B 70190772 70193854 3082 True 4553 4553 93.263000 346 3459 1 chr1B.!!$R1 3113

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.105964 CACTTGTCGTGACCTGGGAA 59.894 55.0 0.0 0.0 46.81 3.97 F
65 66 0.393077 ACTTGTCGTGACCTGGGAAG 59.607 55.0 0.0 0.0 0.00 3.46 F
587 592 0.467106 CCCTCGCTGGATCTCTCTCA 60.467 60.0 0.0 0.0 38.35 3.27 F
1462 1481 0.955919 CAACGAGTTCAGGCCCTTCC 60.956 60.0 0.0 0.0 0.00 3.46 F
2484 2517 0.618458 TAGCCCACATGGTGAAGGTC 59.382 55.0 0.0 0.0 35.23 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1163 1182 0.179936 CTCTTGCCTGACCTCATCCC 59.820 60.000 0.00 0.0 0.00 3.85 R
1167 1186 0.251354 GCATCTCTTGCCTGACCTCA 59.749 55.000 0.00 0.0 46.15 3.86 R
2484 2517 1.067669 TGATTCAGAATCCGAGGAGCG 59.932 52.381 18.80 0.0 37.09 5.03 R
2682 2715 0.033405 AGGAAGCTAGGACCGTGCTA 60.033 55.000 13.31 0.0 35.85 3.49 R
3724 3868 0.396695 CATTGCAGCATTCCCTCCCT 60.397 55.000 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.821216 GGAAAACTCCCAGATTGCGA 58.179 50.000 0.00 0.00 0.00 5.10
22 23 1.468914 GGAAAACTCCCAGATTGCGAC 59.531 52.381 0.00 0.00 0.00 5.19
23 24 2.151202 GAAAACTCCCAGATTGCGACA 58.849 47.619 0.00 0.00 0.00 4.35
24 25 2.270352 AAACTCCCAGATTGCGACAA 57.730 45.000 0.00 0.00 0.00 3.18
25 26 1.813513 AACTCCCAGATTGCGACAAG 58.186 50.000 0.00 0.00 0.00 3.16
26 27 0.687354 ACTCCCAGATTGCGACAAGT 59.313 50.000 0.00 0.00 0.00 3.16
27 28 1.081892 CTCCCAGATTGCGACAAGTG 58.918 55.000 0.00 0.00 0.00 3.16
28 29 0.321564 TCCCAGATTGCGACAAGTGG 60.322 55.000 12.75 12.75 0.00 4.00
29 30 1.503542 CCAGATTGCGACAAGTGGC 59.496 57.895 0.00 0.00 34.76 5.01
49 50 4.047059 GCTGCATGTGCGCCACTT 62.047 61.111 4.18 0.00 45.83 3.16
50 51 2.126618 CTGCATGTGCGCCACTTG 60.127 61.111 4.18 12.50 45.83 3.16
51 52 2.906388 TGCATGTGCGCCACTTGT 60.906 55.556 4.18 0.00 45.83 3.16
52 53 2.126734 GCATGTGCGCCACTTGTC 60.127 61.111 4.18 5.08 40.25 3.18
53 54 2.174107 CATGTGCGCCACTTGTCG 59.826 61.111 4.18 0.00 35.64 4.35
54 55 2.280797 ATGTGCGCCACTTGTCGT 60.281 55.556 4.18 0.00 35.11 4.34
55 56 2.606961 ATGTGCGCCACTTGTCGTG 61.607 57.895 4.18 0.00 43.41 4.35
56 57 2.964925 GTGCGCCACTTGTCGTGA 60.965 61.111 4.18 0.00 46.81 4.35
57 58 2.964925 TGCGCCACTTGTCGTGAC 60.965 61.111 4.18 0.00 46.81 3.67
58 59 3.712881 GCGCCACTTGTCGTGACC 61.713 66.667 0.00 0.00 46.81 4.02
59 60 2.029073 CGCCACTTGTCGTGACCT 59.971 61.111 0.00 0.00 46.81 3.85
60 61 2.310233 CGCCACTTGTCGTGACCTG 61.310 63.158 0.00 0.00 46.81 4.00
61 62 1.961277 GCCACTTGTCGTGACCTGG 60.961 63.158 0.00 0.00 46.81 4.45
62 63 1.301716 CCACTTGTCGTGACCTGGG 60.302 63.158 0.00 0.00 46.81 4.45
63 64 1.745890 CACTTGTCGTGACCTGGGA 59.254 57.895 0.00 0.00 46.81 4.37
64 65 0.105964 CACTTGTCGTGACCTGGGAA 59.894 55.000 0.00 0.00 46.81 3.97
65 66 0.393077 ACTTGTCGTGACCTGGGAAG 59.607 55.000 0.00 0.00 0.00 3.46
66 67 0.679505 CTTGTCGTGACCTGGGAAGA 59.320 55.000 0.00 0.00 0.00 2.87
67 68 1.276421 CTTGTCGTGACCTGGGAAGAT 59.724 52.381 0.00 0.00 0.00 2.40
68 69 0.608130 TGTCGTGACCTGGGAAGATG 59.392 55.000 0.00 0.00 0.00 2.90
69 70 0.895530 GTCGTGACCTGGGAAGATGA 59.104 55.000 0.00 0.00 0.00 2.92
70 71 1.275291 GTCGTGACCTGGGAAGATGAA 59.725 52.381 0.00 0.00 0.00 2.57
71 72 1.550524 TCGTGACCTGGGAAGATGAAG 59.449 52.381 0.00 0.00 0.00 3.02
72 73 1.276421 CGTGACCTGGGAAGATGAAGT 59.724 52.381 0.00 0.00 0.00 3.01
73 74 2.704572 GTGACCTGGGAAGATGAAGTG 58.295 52.381 0.00 0.00 0.00 3.16
74 75 2.039084 GTGACCTGGGAAGATGAAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
75 76 2.711009 TGACCTGGGAAGATGAAGTGTT 59.289 45.455 0.00 0.00 0.00 3.32
76 77 3.244561 TGACCTGGGAAGATGAAGTGTTC 60.245 47.826 0.00 0.00 0.00 3.18
77 78 2.982488 ACCTGGGAAGATGAAGTGTTCT 59.018 45.455 0.00 0.00 31.12 3.01
78 79 3.395941 ACCTGGGAAGATGAAGTGTTCTT 59.604 43.478 0.00 0.00 34.95 2.52
79 80 4.141158 ACCTGGGAAGATGAAGTGTTCTTT 60.141 41.667 0.00 0.00 32.46 2.52
80 81 4.217118 CCTGGGAAGATGAAGTGTTCTTTG 59.783 45.833 0.00 0.00 32.46 2.77
81 82 3.569701 TGGGAAGATGAAGTGTTCTTTGC 59.430 43.478 0.00 0.00 32.46 3.68
82 83 3.569701 GGGAAGATGAAGTGTTCTTTGCA 59.430 43.478 0.00 0.00 32.46 4.08
83 84 4.037923 GGGAAGATGAAGTGTTCTTTGCAA 59.962 41.667 0.00 0.00 32.46 4.08
84 85 4.978580 GGAAGATGAAGTGTTCTTTGCAAC 59.021 41.667 0.00 0.00 32.46 4.17
85 86 4.214980 AGATGAAGTGTTCTTTGCAACG 57.785 40.909 0.00 0.00 33.64 4.10
86 87 3.876914 AGATGAAGTGTTCTTTGCAACGA 59.123 39.130 0.00 0.00 33.64 3.85
87 88 3.673746 TGAAGTGTTCTTTGCAACGAG 57.326 42.857 0.00 0.00 33.64 4.18
88 89 3.006940 TGAAGTGTTCTTTGCAACGAGT 58.993 40.909 0.00 0.00 33.64 4.18
89 90 4.185394 TGAAGTGTTCTTTGCAACGAGTA 58.815 39.130 0.00 0.00 33.64 2.59
90 91 4.033587 TGAAGTGTTCTTTGCAACGAGTAC 59.966 41.667 0.00 6.11 33.64 2.73
91 92 3.793559 AGTGTTCTTTGCAACGAGTACT 58.206 40.909 14.37 14.37 0.00 2.73
92 93 3.802685 AGTGTTCTTTGCAACGAGTACTC 59.197 43.478 13.18 13.18 0.00 2.59
93 94 3.059800 GTGTTCTTTGCAACGAGTACTCC 60.060 47.826 17.23 3.69 0.00 3.85
94 95 3.181469 TGTTCTTTGCAACGAGTACTCCT 60.181 43.478 17.23 2.73 0.00 3.69
95 96 3.746045 TCTTTGCAACGAGTACTCCTT 57.254 42.857 17.23 9.18 0.00 3.36
96 97 3.650139 TCTTTGCAACGAGTACTCCTTC 58.350 45.455 17.23 4.93 0.00 3.46
97 98 3.069016 TCTTTGCAACGAGTACTCCTTCA 59.931 43.478 17.23 7.38 0.00 3.02
98 99 3.678056 TTGCAACGAGTACTCCTTCAT 57.322 42.857 17.23 0.00 0.00 2.57
99 100 3.678056 TGCAACGAGTACTCCTTCATT 57.322 42.857 17.23 1.76 0.00 2.57
100 101 4.794278 TGCAACGAGTACTCCTTCATTA 57.206 40.909 17.23 0.00 0.00 1.90
101 102 4.744570 TGCAACGAGTACTCCTTCATTAG 58.255 43.478 17.23 3.13 0.00 1.73
102 103 4.219944 TGCAACGAGTACTCCTTCATTAGT 59.780 41.667 17.23 3.77 0.00 2.24
103 104 4.563184 GCAACGAGTACTCCTTCATTAGTG 59.437 45.833 17.23 1.71 0.00 2.74
104 105 5.621555 GCAACGAGTACTCCTTCATTAGTGA 60.622 44.000 17.23 0.00 0.00 3.41
105 106 6.565234 CAACGAGTACTCCTTCATTAGTGAT 58.435 40.000 17.23 0.00 33.56 3.06
106 107 6.777213 ACGAGTACTCCTTCATTAGTGATT 57.223 37.500 17.23 0.00 33.56 2.57
107 108 7.171630 ACGAGTACTCCTTCATTAGTGATTT 57.828 36.000 17.23 0.00 33.56 2.17
108 109 7.259161 ACGAGTACTCCTTCATTAGTGATTTC 58.741 38.462 17.23 0.00 33.56 2.17
109 110 6.415280 CGAGTACTCCTTCATTAGTGATTTCG 59.585 42.308 17.23 0.00 33.56 3.46
110 111 6.043411 AGTACTCCTTCATTAGTGATTTCGC 58.957 40.000 0.00 0.00 33.56 4.70
111 112 4.192317 ACTCCTTCATTAGTGATTTCGCC 58.808 43.478 0.00 0.00 33.56 5.54
112 113 4.191544 CTCCTTCATTAGTGATTTCGCCA 58.808 43.478 0.00 0.00 33.56 5.69
113 114 4.584874 TCCTTCATTAGTGATTTCGCCAA 58.415 39.130 0.00 0.00 33.56 4.52
114 115 5.007034 TCCTTCATTAGTGATTTCGCCAAA 58.993 37.500 0.00 0.00 33.56 3.28
115 116 5.475220 TCCTTCATTAGTGATTTCGCCAAAA 59.525 36.000 0.00 0.00 33.56 2.44
116 117 5.801947 CCTTCATTAGTGATTTCGCCAAAAG 59.198 40.000 0.00 0.00 33.56 2.27
117 118 5.309323 TCATTAGTGATTTCGCCAAAAGG 57.691 39.130 0.00 0.00 0.00 3.11
118 119 5.007034 TCATTAGTGATTTCGCCAAAAGGA 58.993 37.500 0.00 0.00 0.00 3.36
119 120 5.123820 TCATTAGTGATTTCGCCAAAAGGAG 59.876 40.000 0.00 0.00 0.00 3.69
120 121 1.541588 AGTGATTTCGCCAAAAGGAGC 59.458 47.619 0.00 0.00 0.00 4.70
121 122 1.541588 GTGATTTCGCCAAAAGGAGCT 59.458 47.619 0.00 0.00 0.00 4.09
122 123 2.029918 GTGATTTCGCCAAAAGGAGCTT 60.030 45.455 0.00 0.00 0.00 3.74
123 124 2.228822 TGATTTCGCCAAAAGGAGCTTC 59.771 45.455 0.00 0.00 0.00 3.86
124 125 0.591170 TTTCGCCAAAAGGAGCTTCG 59.409 50.000 0.00 0.00 0.00 3.79
125 126 0.534203 TTCGCCAAAAGGAGCTTCGT 60.534 50.000 0.00 0.00 0.00 3.85
126 127 1.207593 CGCCAAAAGGAGCTTCGTG 59.792 57.895 0.00 0.00 0.00 4.35
127 128 1.581447 GCCAAAAGGAGCTTCGTGG 59.419 57.895 7.81 7.81 33.99 4.94
128 129 1.172812 GCCAAAAGGAGCTTCGTGGT 61.173 55.000 12.42 0.00 33.63 4.16
129 130 0.875059 CCAAAAGGAGCTTCGTGGTC 59.125 55.000 4.65 2.71 42.07 4.02
134 135 2.504244 GAGCTTCGTGGTCCGTCG 60.504 66.667 0.00 0.61 37.22 5.12
135 136 4.719369 AGCTTCGTGGTCCGTCGC 62.719 66.667 2.01 0.00 37.94 5.19
137 138 4.052229 CTTCGTGGTCCGTCGCCT 62.052 66.667 2.01 0.00 37.94 5.52
138 139 3.966026 CTTCGTGGTCCGTCGCCTC 62.966 68.421 2.01 0.00 37.94 4.70
150 151 4.077184 CGCCTCCCACCAGCGTAA 62.077 66.667 0.00 0.00 44.65 3.18
151 152 2.349755 GCCTCCCACCAGCGTAAA 59.650 61.111 0.00 0.00 0.00 2.01
152 153 1.302993 GCCTCCCACCAGCGTAAAA 60.303 57.895 0.00 0.00 0.00 1.52
153 154 0.891904 GCCTCCCACCAGCGTAAAAA 60.892 55.000 0.00 0.00 0.00 1.94
220 221 4.331968 CACAACCCACAACCTATGTACAT 58.668 43.478 13.93 13.93 41.46 2.29
229 230 4.412199 ACAACCTATGTACATACAGCCCAT 59.588 41.667 11.62 0.00 41.63 4.00
245 246 1.421646 CCCATAACCTAGAAGGCCCAG 59.578 57.143 0.00 0.00 39.63 4.45
250 251 5.163088 CCATAACCTAGAAGGCCCAGTTATT 60.163 44.000 0.00 0.00 39.63 1.40
261 262 8.063770 AGAAGGCCCAGTTATTAACTACTAGTA 58.936 37.037 8.71 1.89 40.46 1.82
275 276 6.155475 ACTACTAGTACTAGTCCTACGGTG 57.845 45.833 33.47 17.89 44.58 4.94
276 277 3.802866 ACTAGTACTAGTCCTACGGTGC 58.197 50.000 26.61 0.00 42.30 5.01
277 278 2.049888 AGTACTAGTCCTACGGTGCC 57.950 55.000 0.00 0.00 0.00 5.01
278 279 1.563410 AGTACTAGTCCTACGGTGCCT 59.437 52.381 0.00 0.00 0.00 4.75
279 280 1.674962 GTACTAGTCCTACGGTGCCTG 59.325 57.143 0.00 0.00 0.00 4.85
280 281 0.683504 ACTAGTCCTACGGTGCCTGG 60.684 60.000 0.00 0.00 0.00 4.45
281 282 1.380785 TAGTCCTACGGTGCCTGGG 60.381 63.158 0.00 0.00 0.00 4.45
282 283 4.468689 GTCCTACGGTGCCTGGGC 62.469 72.222 4.43 4.43 42.35 5.36
524 528 0.664761 CTGCCAACAACACCAGACAG 59.335 55.000 0.00 0.00 0.00 3.51
585 590 1.832167 GCCCTCGCTGGATCTCTCT 60.832 63.158 0.00 0.00 38.35 3.10
586 591 1.805428 GCCCTCGCTGGATCTCTCTC 61.805 65.000 0.00 0.00 38.35 3.20
587 592 0.467106 CCCTCGCTGGATCTCTCTCA 60.467 60.000 0.00 0.00 38.35 3.27
588 593 1.397672 CCTCGCTGGATCTCTCTCAA 58.602 55.000 0.00 0.00 38.35 3.02
668 673 3.425162 AAAAGTCACCTTAGCTGAGGG 57.575 47.619 26.87 16.19 41.31 4.30
688 693 7.518188 TGAGGGAAATTCTAATTAGGTCATCC 58.482 38.462 12.54 13.86 0.00 3.51
704 723 3.065371 GTCATCCGGTCATGGATTTTGTC 59.935 47.826 0.00 0.00 46.74 3.18
705 724 2.869101 TCCGGTCATGGATTTTGTCA 57.131 45.000 0.00 0.00 31.53 3.58
706 725 3.147553 TCCGGTCATGGATTTTGTCAA 57.852 42.857 0.00 0.00 31.53 3.18
707 726 3.696045 TCCGGTCATGGATTTTGTCAAT 58.304 40.909 0.00 0.00 31.53 2.57
708 727 4.085733 TCCGGTCATGGATTTTGTCAATT 58.914 39.130 0.00 0.00 31.53 2.32
709 728 4.082300 TCCGGTCATGGATTTTGTCAATTG 60.082 41.667 0.00 0.00 31.53 2.32
710 729 4.175516 CGGTCATGGATTTTGTCAATTGG 58.824 43.478 5.42 0.00 0.00 3.16
711 730 4.082300 CGGTCATGGATTTTGTCAATTGGA 60.082 41.667 5.42 0.00 0.00 3.53
712 731 5.394443 CGGTCATGGATTTTGTCAATTGGAT 60.394 40.000 5.42 0.00 0.00 3.41
713 732 6.408869 GGTCATGGATTTTGTCAATTGGATT 58.591 36.000 5.42 0.00 0.00 3.01
714 733 6.314400 GGTCATGGATTTTGTCAATTGGATTG 59.686 38.462 5.42 0.00 41.57 2.67
715 734 6.314400 GTCATGGATTTTGTCAATTGGATTGG 59.686 38.462 5.42 0.00 40.61 3.16
716 735 6.212993 TCATGGATTTTGTCAATTGGATTGGA 59.787 34.615 5.42 0.00 40.61 3.53
717 736 6.623979 TGGATTTTGTCAATTGGATTGGAT 57.376 33.333 5.42 0.00 40.61 3.41
718 737 7.018487 TGGATTTTGTCAATTGGATTGGATT 57.982 32.000 5.42 0.00 40.61 3.01
719 738 7.460071 TGGATTTTGTCAATTGGATTGGATTT 58.540 30.769 5.42 0.00 40.61 2.17
720 739 7.943447 TGGATTTTGTCAATTGGATTGGATTTT 59.057 29.630 5.42 0.00 40.61 1.82
721 740 8.238631 GGATTTTGTCAATTGGATTGGATTTTG 58.761 33.333 5.42 0.00 40.61 2.44
722 741 8.694581 ATTTTGTCAATTGGATTGGATTTTGT 57.305 26.923 5.42 0.00 40.61 2.83
763 782 2.736144 TACAGCGAACCGAATTCTGT 57.264 45.000 3.52 0.00 34.88 3.41
822 841 6.162777 AGAAATGAAGAGCTCAGTTGTAGTC 58.837 40.000 17.77 3.53 42.25 2.59
846 865 7.544566 GTCAACCGAATTTCTGTACTGATTAGA 59.455 37.037 3.03 0.00 0.00 2.10
1129 1148 2.335369 CCTATTCGACCGCTCCCG 59.665 66.667 0.00 0.00 0.00 5.14
1163 1182 1.915769 GGGAGGAGGATGGGGATCG 60.916 68.421 0.00 0.00 0.00 3.69
1164 1183 1.915769 GGAGGAGGATGGGGATCGG 60.916 68.421 0.00 0.00 0.00 4.18
1167 1186 1.229658 GGAGGATGGGGATCGGGAT 60.230 63.158 0.00 0.00 0.00 3.85
1462 1481 0.955919 CAACGAGTTCAGGCCCTTCC 60.956 60.000 0.00 0.00 0.00 3.46
1708 1727 4.012374 CAGTAAGGCCACTGTGATCAAAT 58.988 43.478 13.82 0.00 40.89 2.32
1929 1962 4.082949 GGTAAAGTGGTGAGGAAAAATCCG 60.083 45.833 0.00 0.00 34.28 4.18
1947 1980 1.857837 CCGCATTTGTTGTTGGAACAC 59.142 47.619 0.00 0.00 39.29 3.32
2079 2112 2.572290 GGTTGGAACATATCGAAGGGG 58.428 52.381 0.00 0.00 39.30 4.79
2123 2156 4.576053 TGGCATAAGCTATTGTGATGTGAC 59.424 41.667 0.00 0.00 41.70 3.67
2484 2517 0.618458 TAGCCCACATGGTGAAGGTC 59.382 55.000 0.00 0.00 35.23 3.85
2682 2715 1.545651 GCTGCACCCCAACTTACTCTT 60.546 52.381 0.00 0.00 0.00 2.85
2883 2923 7.378181 TGAGTTGACTGCTTTTCTTTTCTTTT 58.622 30.769 0.00 0.00 0.00 2.27
2901 2941 6.259550 TCTTTTCTTTCTGCATTTCTAGCC 57.740 37.500 0.00 0.00 0.00 3.93
2905 2945 3.758554 TCTTTCTGCATTTCTAGCCCAAC 59.241 43.478 0.00 0.00 0.00 3.77
2947 2992 4.307259 ACCTTCTATAATTCCTGCCTCCA 58.693 43.478 0.00 0.00 0.00 3.86
2951 2996 5.233083 TCTATAATTCCTGCCTCCACATG 57.767 43.478 0.00 0.00 0.00 3.21
2952 2997 3.959495 ATAATTCCTGCCTCCACATGT 57.041 42.857 0.00 0.00 0.00 3.21
2953 2998 5.843969 TCTATAATTCCTGCCTCCACATGTA 59.156 40.000 0.00 0.00 0.00 2.29
2954 2999 3.959495 AATTCCTGCCTCCACATGTAT 57.041 42.857 0.00 0.00 0.00 2.29
3034 3080 1.035139 GGGCTTCTGGCATTATGGTG 58.965 55.000 0.00 0.00 44.01 4.17
3050 3123 1.948834 TGGTGCTGGCATTTATCATCG 59.051 47.619 0.00 0.00 0.00 3.84
3091 3164 7.591795 CGTCATGGTAGTACTATTTCACATCTC 59.408 40.741 5.75 2.33 0.00 2.75
3107 3180 7.601073 TCACATCTCATTCACATTGTACTTC 57.399 36.000 0.00 0.00 0.00 3.01
3108 3181 7.389232 TCACATCTCATTCACATTGTACTTCT 58.611 34.615 0.00 0.00 0.00 2.85
3109 3182 7.879677 TCACATCTCATTCACATTGTACTTCTT 59.120 33.333 0.00 0.00 0.00 2.52
3213 3288 1.358152 TGGTCCCTCCGAATTTCTGT 58.642 50.000 0.00 0.00 39.52 3.41
3215 3290 1.555533 GGTCCCTCCGAATTTCTGTCT 59.444 52.381 0.00 0.00 0.00 3.41
3307 3389 5.738909 TGAGAGAATGGAAGATGAGGAAAC 58.261 41.667 0.00 0.00 0.00 2.78
3360 3443 2.239654 TGAAGCTTTCGGATGGAGGATT 59.760 45.455 0.00 0.00 0.00 3.01
3362 3445 2.648059 AGCTTTCGGATGGAGGATTTG 58.352 47.619 0.00 0.00 0.00 2.32
3387 3474 4.632538 AGTGTGGAGTGTTTGTTTTAGC 57.367 40.909 0.00 0.00 0.00 3.09
3393 3480 5.526111 GTGGAGTGTTTGTTTTAGCTCACTA 59.474 40.000 0.00 0.00 36.49 2.74
3417 3504 5.482163 TTATTCAGAGTCATGTGTGTCCA 57.518 39.130 0.00 0.00 0.00 4.02
3421 3508 1.349026 AGAGTCATGTGTGTCCAAGGG 59.651 52.381 0.00 0.00 0.00 3.95
3628 3772 0.339859 ACAGAGGGCTCATGTAGGGA 59.660 55.000 0.00 0.00 0.00 4.20
3645 3789 4.569719 AGGGAAATCCGTACACAAATCT 57.430 40.909 0.00 0.00 41.52 2.40
3646 3790 4.261801 AGGGAAATCCGTACACAAATCTG 58.738 43.478 0.00 0.00 41.52 2.90
3647 3791 4.019681 AGGGAAATCCGTACACAAATCTGA 60.020 41.667 0.00 0.00 41.52 3.27
3648 3792 4.698304 GGGAAATCCGTACACAAATCTGAA 59.302 41.667 0.00 0.00 36.71 3.02
3649 3793 5.163754 GGGAAATCCGTACACAAATCTGAAG 60.164 44.000 0.00 0.00 36.71 3.02
3650 3794 5.163754 GGAAATCCGTACACAAATCTGAAGG 60.164 44.000 0.00 0.00 0.00 3.46
3651 3795 3.328382 TCCGTACACAAATCTGAAGGG 57.672 47.619 0.00 0.00 0.00 3.95
3652 3796 2.635915 TCCGTACACAAATCTGAAGGGT 59.364 45.455 0.00 0.00 0.00 4.34
3653 3797 3.000727 CCGTACACAAATCTGAAGGGTC 58.999 50.000 0.00 0.00 0.00 4.46
3654 3798 3.000727 CGTACACAAATCTGAAGGGTCC 58.999 50.000 0.00 0.00 0.00 4.46
3655 3799 3.556213 CGTACACAAATCTGAAGGGTCCA 60.556 47.826 0.00 0.00 0.00 4.02
3656 3800 3.146104 ACACAAATCTGAAGGGTCCAG 57.854 47.619 0.00 0.00 0.00 3.86
3657 3801 1.815003 CACAAATCTGAAGGGTCCAGC 59.185 52.381 0.00 0.00 0.00 4.85
3658 3802 1.707427 ACAAATCTGAAGGGTCCAGCT 59.293 47.619 0.00 0.00 0.00 4.24
3659 3803 2.912956 ACAAATCTGAAGGGTCCAGCTA 59.087 45.455 0.00 0.00 0.00 3.32
3660 3804 3.054802 ACAAATCTGAAGGGTCCAGCTAG 60.055 47.826 0.00 0.00 0.00 3.42
3661 3805 1.799933 ATCTGAAGGGTCCAGCTAGG 58.200 55.000 0.00 0.00 39.47 3.02
3662 3806 0.710588 TCTGAAGGGTCCAGCTAGGA 59.289 55.000 1.25 1.25 46.75 2.94
3685 3829 5.357742 AAAAATTTCAAGAGCACCCACTT 57.642 34.783 0.00 0.00 0.00 3.16
3686 3830 4.326504 AAATTTCAAGAGCACCCACTTG 57.673 40.909 0.00 0.00 43.03 3.16
3687 3831 2.435372 TTTCAAGAGCACCCACTTGT 57.565 45.000 0.00 0.00 42.50 3.16
3688 3832 3.569194 TTTCAAGAGCACCCACTTGTA 57.431 42.857 0.00 0.00 42.50 2.41
3689 3833 2.839486 TCAAGAGCACCCACTTGTAG 57.161 50.000 0.00 0.00 42.50 2.74
3690 3834 2.047061 TCAAGAGCACCCACTTGTAGT 58.953 47.619 0.00 0.00 42.50 2.73
3691 3835 2.037251 TCAAGAGCACCCACTTGTAGTC 59.963 50.000 0.00 0.00 42.50 2.59
3692 3836 2.016905 AGAGCACCCACTTGTAGTCT 57.983 50.000 0.00 0.00 0.00 3.24
3693 3837 2.330216 AGAGCACCCACTTGTAGTCTT 58.670 47.619 0.00 0.00 0.00 3.01
3694 3838 2.706190 AGAGCACCCACTTGTAGTCTTT 59.294 45.455 0.00 0.00 0.00 2.52
3695 3839 2.808543 GAGCACCCACTTGTAGTCTTTG 59.191 50.000 0.00 0.00 0.00 2.77
3696 3840 2.438021 AGCACCCACTTGTAGTCTTTGA 59.562 45.455 0.00 0.00 0.00 2.69
3697 3841 2.548480 GCACCCACTTGTAGTCTTTGAC 59.452 50.000 0.00 0.00 0.00 3.18
3698 3842 3.744530 GCACCCACTTGTAGTCTTTGACT 60.745 47.826 5.53 5.53 45.54 3.41
3699 3843 4.058817 CACCCACTTGTAGTCTTTGACTC 58.941 47.826 3.30 0.00 42.40 3.36
3700 3844 3.071167 ACCCACTTGTAGTCTTTGACTCC 59.929 47.826 3.30 0.00 42.40 3.85
3701 3845 3.071023 CCCACTTGTAGTCTTTGACTCCA 59.929 47.826 3.30 0.00 42.40 3.86
3702 3846 4.444306 CCCACTTGTAGTCTTTGACTCCAA 60.444 45.833 3.30 4.73 42.40 3.53
3703 3847 5.308825 CCACTTGTAGTCTTTGACTCCAAT 58.691 41.667 3.30 0.00 42.40 3.16
3704 3848 5.765182 CCACTTGTAGTCTTTGACTCCAATT 59.235 40.000 3.30 0.00 42.40 2.32
3705 3849 6.073003 CCACTTGTAGTCTTTGACTCCAATTC 60.073 42.308 3.30 0.00 42.40 2.17
3706 3850 6.483307 CACTTGTAGTCTTTGACTCCAATTCA 59.517 38.462 3.30 0.00 42.40 2.57
3707 3851 7.173907 CACTTGTAGTCTTTGACTCCAATTCAT 59.826 37.037 3.30 0.00 42.40 2.57
3708 3852 7.721399 ACTTGTAGTCTTTGACTCCAATTCATT 59.279 33.333 3.30 0.00 42.40 2.57
3709 3853 7.672983 TGTAGTCTTTGACTCCAATTCATTC 57.327 36.000 3.30 0.00 42.40 2.67
3710 3854 7.223584 TGTAGTCTTTGACTCCAATTCATTCA 58.776 34.615 3.30 0.00 42.40 2.57
3711 3855 6.814506 AGTCTTTGACTCCAATTCATTCAG 57.185 37.500 0.00 0.00 38.71 3.02
3712 3856 6.537355 AGTCTTTGACTCCAATTCATTCAGA 58.463 36.000 0.00 0.00 38.71 3.27
3713 3857 6.654161 AGTCTTTGACTCCAATTCATTCAGAG 59.346 38.462 0.00 0.00 38.71 3.35
3714 3858 5.413833 TCTTTGACTCCAATTCATTCAGAGC 59.586 40.000 0.00 0.00 31.46 4.09
3715 3859 4.564782 TGACTCCAATTCATTCAGAGCT 57.435 40.909 0.00 0.00 0.00 4.09
3716 3860 4.914983 TGACTCCAATTCATTCAGAGCTT 58.085 39.130 0.00 0.00 0.00 3.74
3717 3861 5.319453 TGACTCCAATTCATTCAGAGCTTT 58.681 37.500 0.00 0.00 0.00 3.51
3718 3862 5.182570 TGACTCCAATTCATTCAGAGCTTTG 59.817 40.000 0.00 0.00 0.00 2.77
3719 3863 5.075493 ACTCCAATTCATTCAGAGCTTTGT 58.925 37.500 3.90 0.00 0.00 2.83
3720 3864 5.182760 ACTCCAATTCATTCAGAGCTTTGTC 59.817 40.000 3.90 0.00 0.00 3.18
3721 3865 5.072055 TCCAATTCATTCAGAGCTTTGTCA 58.928 37.500 3.90 0.00 0.00 3.58
3722 3866 5.713389 TCCAATTCATTCAGAGCTTTGTCAT 59.287 36.000 3.90 0.00 0.00 3.06
3723 3867 6.209986 TCCAATTCATTCAGAGCTTTGTCATT 59.790 34.615 3.90 0.00 0.00 2.57
3724 3868 7.394077 TCCAATTCATTCAGAGCTTTGTCATTA 59.606 33.333 3.90 0.00 0.00 1.90
3725 3869 7.701078 CCAATTCATTCAGAGCTTTGTCATTAG 59.299 37.037 3.90 0.00 0.00 1.73
3726 3870 6.748333 TTCATTCAGAGCTTTGTCATTAGG 57.252 37.500 3.90 0.00 0.00 2.69
3727 3871 5.188434 TCATTCAGAGCTTTGTCATTAGGG 58.812 41.667 3.90 0.00 0.00 3.53
3728 3872 4.908601 TTCAGAGCTTTGTCATTAGGGA 57.091 40.909 3.90 0.00 0.00 4.20
3729 3873 4.478206 TCAGAGCTTTGTCATTAGGGAG 57.522 45.455 3.90 0.00 0.00 4.30
3730 3874 3.198635 TCAGAGCTTTGTCATTAGGGAGG 59.801 47.826 3.90 0.00 0.00 4.30
3731 3875 2.507471 AGAGCTTTGTCATTAGGGAGGG 59.493 50.000 0.00 0.00 0.00 4.30
3732 3876 2.505819 GAGCTTTGTCATTAGGGAGGGA 59.494 50.000 0.00 0.00 0.00 4.20
3733 3877 2.919602 AGCTTTGTCATTAGGGAGGGAA 59.080 45.455 0.00 0.00 0.00 3.97
3734 3878 3.529319 AGCTTTGTCATTAGGGAGGGAAT 59.471 43.478 0.00 0.00 0.00 3.01
3735 3879 3.633986 GCTTTGTCATTAGGGAGGGAATG 59.366 47.826 0.00 0.00 34.89 2.67
3736 3880 3.297134 TTGTCATTAGGGAGGGAATGC 57.703 47.619 0.00 0.00 33.82 3.56
3737 3881 2.492025 TGTCATTAGGGAGGGAATGCT 58.508 47.619 0.00 0.00 33.82 3.79
3738 3882 2.173356 TGTCATTAGGGAGGGAATGCTG 59.827 50.000 0.00 0.00 33.82 4.41
3739 3883 1.143684 TCATTAGGGAGGGAATGCTGC 59.856 52.381 0.00 0.00 33.82 5.25
3740 3884 1.133699 CATTAGGGAGGGAATGCTGCA 60.134 52.381 4.13 4.13 0.00 4.41
3741 3885 0.998928 TTAGGGAGGGAATGCTGCAA 59.001 50.000 6.36 0.00 0.00 4.08
3742 3886 1.225373 TAGGGAGGGAATGCTGCAAT 58.775 50.000 6.36 0.00 0.00 3.56
3743 3887 0.396695 AGGGAGGGAATGCTGCAATG 60.397 55.000 6.36 0.00 0.00 2.82
3744 3888 1.440476 GGAGGGAATGCTGCAATGC 59.560 57.895 6.36 2.88 0.00 3.56
3754 3898 3.497297 TGCTGCAATGCATTCAGTAAG 57.503 42.857 25.92 15.05 38.13 2.34
3755 3899 2.190981 GCTGCAATGCATTCAGTAAGC 58.809 47.619 25.92 19.22 38.13 3.09
3756 3900 2.159282 GCTGCAATGCATTCAGTAAGCT 60.159 45.455 25.92 0.00 38.13 3.74
3757 3901 3.692576 CTGCAATGCATTCAGTAAGCTC 58.307 45.455 21.23 3.13 38.13 4.09
3758 3902 3.083293 TGCAATGCATTCAGTAAGCTCA 58.917 40.909 9.53 0.00 31.71 4.26
3759 3903 3.506844 TGCAATGCATTCAGTAAGCTCAA 59.493 39.130 9.53 0.00 31.71 3.02
3765 3909 6.389830 TGCATTCAGTAAGCTCAAAGAAAA 57.610 33.333 0.00 0.00 0.00 2.29
3775 3919 4.662145 AGCTCAAAGAAAACACAAAGTCG 58.338 39.130 0.00 0.00 0.00 4.18
3777 3921 4.411327 CTCAAAGAAAACACAAAGTCGCA 58.589 39.130 0.00 0.00 0.00 5.10
3779 3923 4.619336 TCAAAGAAAACACAAAGTCGCAAC 59.381 37.500 0.00 0.00 0.00 4.17
3780 3924 4.434713 AAGAAAACACAAAGTCGCAACT 57.565 36.364 0.00 0.00 37.32 3.16
3781 3925 4.016113 AGAAAACACAAAGTCGCAACTC 57.984 40.909 0.00 0.00 33.48 3.01
3782 3926 3.689649 AGAAAACACAAAGTCGCAACTCT 59.310 39.130 0.00 0.00 33.48 3.24
3789 3934 3.108144 CAAAGTCGCAACTCTTTTGGTG 58.892 45.455 0.00 0.00 33.48 4.17
3843 3988 7.792374 ACATTTTATCATACGCTCATGAACT 57.208 32.000 0.00 0.00 38.39 3.01
3844 3989 7.633621 ACATTTTATCATACGCTCATGAACTG 58.366 34.615 0.00 0.00 38.39 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.151202 TGTCGCAATCTGGGAGTTTTC 58.849 47.619 0.00 0.00 40.09 2.29
4 5 2.270352 TGTCGCAATCTGGGAGTTTT 57.730 45.000 0.00 0.00 40.09 2.43
5 6 2.154462 CTTGTCGCAATCTGGGAGTTT 58.846 47.619 0.00 0.00 40.09 2.66
6 7 1.072331 ACTTGTCGCAATCTGGGAGTT 59.928 47.619 0.00 0.00 40.09 3.01
7 8 0.687354 ACTTGTCGCAATCTGGGAGT 59.313 50.000 0.00 0.00 40.09 3.85
8 9 1.081892 CACTTGTCGCAATCTGGGAG 58.918 55.000 0.00 0.00 40.09 4.30
9 10 0.321564 CCACTTGTCGCAATCTGGGA 60.322 55.000 7.79 0.00 36.96 4.37
10 11 1.926511 GCCACTTGTCGCAATCTGGG 61.927 60.000 13.43 0.00 0.00 4.45
11 12 1.503542 GCCACTTGTCGCAATCTGG 59.496 57.895 9.90 9.90 0.00 3.86
12 13 1.133253 CGCCACTTGTCGCAATCTG 59.867 57.895 0.00 0.00 0.00 2.90
13 14 3.566261 CGCCACTTGTCGCAATCT 58.434 55.556 0.00 0.00 0.00 2.40
32 33 4.047059 AAGTGGCGCACATGCAGC 62.047 61.111 10.83 8.22 42.21 5.25
33 34 2.126618 CAAGTGGCGCACATGCAG 60.127 61.111 10.83 0.00 42.21 4.41
34 35 2.906388 ACAAGTGGCGCACATGCA 60.906 55.556 10.83 0.00 36.67 3.96
35 36 2.126734 GACAAGTGGCGCACATGC 60.127 61.111 10.83 0.00 36.67 4.06
36 37 2.174107 CGACAAGTGGCGCACATG 59.826 61.111 10.83 11.41 40.91 3.21
46 47 0.393077 CTTCCCAGGTCACGACAAGT 59.607 55.000 0.00 0.00 0.00 3.16
47 48 0.679505 TCTTCCCAGGTCACGACAAG 59.320 55.000 0.00 0.00 0.00 3.16
48 49 1.001974 CATCTTCCCAGGTCACGACAA 59.998 52.381 0.00 0.00 0.00 3.18
49 50 0.608130 CATCTTCCCAGGTCACGACA 59.392 55.000 0.00 0.00 0.00 4.35
50 51 0.895530 TCATCTTCCCAGGTCACGAC 59.104 55.000 0.00 0.00 0.00 4.34
51 52 1.550524 CTTCATCTTCCCAGGTCACGA 59.449 52.381 0.00 0.00 0.00 4.35
52 53 1.276421 ACTTCATCTTCCCAGGTCACG 59.724 52.381 0.00 0.00 0.00 4.35
53 54 2.039084 ACACTTCATCTTCCCAGGTCAC 59.961 50.000 0.00 0.00 0.00 3.67
54 55 2.338809 ACACTTCATCTTCCCAGGTCA 58.661 47.619 0.00 0.00 0.00 4.02
55 56 3.008485 AGAACACTTCATCTTCCCAGGTC 59.992 47.826 0.00 0.00 0.00 3.85
56 57 2.982488 AGAACACTTCATCTTCCCAGGT 59.018 45.455 0.00 0.00 0.00 4.00
57 58 3.710209 AGAACACTTCATCTTCCCAGG 57.290 47.619 0.00 0.00 0.00 4.45
58 59 4.320788 GCAAAGAACACTTCATCTTCCCAG 60.321 45.833 0.00 0.00 34.90 4.45
59 60 3.569701 GCAAAGAACACTTCATCTTCCCA 59.430 43.478 0.00 0.00 34.90 4.37
60 61 3.569701 TGCAAAGAACACTTCATCTTCCC 59.430 43.478 0.00 0.00 34.90 3.97
61 62 4.836125 TGCAAAGAACACTTCATCTTCC 57.164 40.909 0.00 0.00 34.90 3.46
62 63 4.672413 CGTTGCAAAGAACACTTCATCTTC 59.328 41.667 6.52 0.00 34.90 2.87
63 64 4.335315 TCGTTGCAAAGAACACTTCATCTT 59.665 37.500 12.88 0.00 37.49 2.40
64 65 3.876914 TCGTTGCAAAGAACACTTCATCT 59.123 39.130 12.88 0.00 0.00 2.90
65 66 4.209452 TCGTTGCAAAGAACACTTCATC 57.791 40.909 12.88 0.00 0.00 2.92
66 67 3.627577 ACTCGTTGCAAAGAACACTTCAT 59.372 39.130 15.91 0.00 0.00 2.57
67 68 3.006940 ACTCGTTGCAAAGAACACTTCA 58.993 40.909 15.91 0.00 0.00 3.02
68 69 3.675467 ACTCGTTGCAAAGAACACTTC 57.325 42.857 15.91 0.00 0.00 3.01
69 70 4.189231 AGTACTCGTTGCAAAGAACACTT 58.811 39.130 15.91 4.93 0.00 3.16
70 71 3.793559 AGTACTCGTTGCAAAGAACACT 58.206 40.909 15.91 16.69 0.00 3.55
71 72 3.059800 GGAGTACTCGTTGCAAAGAACAC 60.060 47.826 15.91 14.96 0.00 3.32
72 73 3.128349 GGAGTACTCGTTGCAAAGAACA 58.872 45.455 15.91 4.24 0.00 3.18
73 74 3.391049 AGGAGTACTCGTTGCAAAGAAC 58.609 45.455 15.91 11.95 0.00 3.01
74 75 3.746045 AGGAGTACTCGTTGCAAAGAA 57.254 42.857 15.91 0.00 0.00 2.52
75 76 3.069016 TGAAGGAGTACTCGTTGCAAAGA 59.931 43.478 29.98 14.45 37.75 2.52
76 77 3.390135 TGAAGGAGTACTCGTTGCAAAG 58.610 45.455 29.98 2.46 37.75 2.77
77 78 3.462483 TGAAGGAGTACTCGTTGCAAA 57.538 42.857 29.98 13.35 37.75 3.68
78 79 3.678056 ATGAAGGAGTACTCGTTGCAA 57.322 42.857 29.98 17.66 37.75 4.08
79 80 3.678056 AATGAAGGAGTACTCGTTGCA 57.322 42.857 29.98 25.04 37.75 4.08
80 81 4.563184 CACTAATGAAGGAGTACTCGTTGC 59.437 45.833 29.98 21.43 37.75 4.17
81 82 5.950883 TCACTAATGAAGGAGTACTCGTTG 58.049 41.667 29.98 19.09 37.75 4.10
82 83 6.777213 ATCACTAATGAAGGAGTACTCGTT 57.223 37.500 26.41 26.41 38.69 3.85
83 84 6.777213 AATCACTAATGAAGGAGTACTCGT 57.223 37.500 16.56 14.43 38.69 4.18
84 85 6.415280 CGAAATCACTAATGAAGGAGTACTCG 59.585 42.308 16.56 2.92 38.69 4.18
85 86 6.199342 GCGAAATCACTAATGAAGGAGTACTC 59.801 42.308 14.87 14.87 38.69 2.59
86 87 6.043411 GCGAAATCACTAATGAAGGAGTACT 58.957 40.000 0.00 0.00 38.69 2.73
87 88 5.234543 GGCGAAATCACTAATGAAGGAGTAC 59.765 44.000 0.00 0.00 38.69 2.73
88 89 5.105106 TGGCGAAATCACTAATGAAGGAGTA 60.105 40.000 0.00 0.00 38.69 2.59
89 90 4.192317 GGCGAAATCACTAATGAAGGAGT 58.808 43.478 0.00 0.00 38.69 3.85
90 91 4.191544 TGGCGAAATCACTAATGAAGGAG 58.808 43.478 0.00 0.00 38.69 3.69
91 92 4.214986 TGGCGAAATCACTAATGAAGGA 57.785 40.909 0.00 0.00 38.69 3.36
92 93 4.963276 TTGGCGAAATCACTAATGAAGG 57.037 40.909 0.00 0.00 38.69 3.46
93 94 5.801947 CCTTTTGGCGAAATCACTAATGAAG 59.198 40.000 0.00 0.00 38.69 3.02
94 95 5.475220 TCCTTTTGGCGAAATCACTAATGAA 59.525 36.000 0.00 0.00 37.74 2.57
95 96 5.007034 TCCTTTTGGCGAAATCACTAATGA 58.993 37.500 0.00 0.00 40.12 2.57
96 97 5.309323 TCCTTTTGGCGAAATCACTAATG 57.691 39.130 0.00 0.00 40.12 1.90
97 98 4.142381 GCTCCTTTTGGCGAAATCACTAAT 60.142 41.667 0.00 0.00 40.12 1.73
98 99 3.190535 GCTCCTTTTGGCGAAATCACTAA 59.809 43.478 0.00 0.00 40.12 2.24
99 100 2.747446 GCTCCTTTTGGCGAAATCACTA 59.253 45.455 0.00 0.00 40.12 2.74
100 101 1.541588 GCTCCTTTTGGCGAAATCACT 59.458 47.619 0.00 0.00 40.12 3.41
101 102 1.541588 AGCTCCTTTTGGCGAAATCAC 59.458 47.619 0.00 0.00 40.12 3.06
102 103 1.909700 AGCTCCTTTTGGCGAAATCA 58.090 45.000 0.00 0.00 40.12 2.57
103 104 2.729156 CGAAGCTCCTTTTGGCGAAATC 60.729 50.000 0.00 0.00 40.12 2.17
104 105 1.200020 CGAAGCTCCTTTTGGCGAAAT 59.800 47.619 0.00 0.00 40.12 2.17
105 106 0.591170 CGAAGCTCCTTTTGGCGAAA 59.409 50.000 0.00 0.00 40.12 3.46
106 107 0.534203 ACGAAGCTCCTTTTGGCGAA 60.534 50.000 0.00 0.00 40.12 4.70
107 108 1.070786 ACGAAGCTCCTTTTGGCGA 59.929 52.632 0.00 0.00 40.12 5.54
108 109 1.207593 CACGAAGCTCCTTTTGGCG 59.792 57.895 0.00 0.00 40.12 5.69
109 110 1.172812 ACCACGAAGCTCCTTTTGGC 61.173 55.000 0.00 0.00 40.12 4.52
110 111 0.875059 GACCACGAAGCTCCTTTTGG 59.125 55.000 0.00 0.00 42.21 3.28
111 112 0.875059 GGACCACGAAGCTCCTTTTG 59.125 55.000 0.00 0.00 0.00 2.44
112 113 3.324207 GGACCACGAAGCTCCTTTT 57.676 52.632 0.00 0.00 0.00 2.27
134 135 0.891904 TTTTTACGCTGGTGGGAGGC 60.892 55.000 0.00 0.00 0.00 4.70
135 136 3.332706 TTTTTACGCTGGTGGGAGG 57.667 52.632 0.00 0.00 0.00 4.30
168 169 3.270960 TGTACATAGGGGGCCTCATTTTT 59.729 43.478 5.99 0.00 34.61 1.94
169 170 2.856231 TGTACATAGGGGGCCTCATTTT 59.144 45.455 5.99 0.00 34.61 1.82
170 171 2.498441 TGTACATAGGGGGCCTCATTT 58.502 47.619 5.99 0.00 34.61 2.32
171 172 2.206322 TGTACATAGGGGGCCTCATT 57.794 50.000 5.99 0.00 34.61 2.57
172 173 2.440494 ATGTACATAGGGGGCCTCAT 57.560 50.000 5.99 0.00 34.61 2.90
173 174 2.090437 TGTATGTACATAGGGGGCCTCA 60.090 50.000 15.93 5.27 34.61 3.86
174 175 2.567615 CTGTATGTACATAGGGGGCCTC 59.432 54.545 15.93 0.00 35.36 4.70
175 176 2.621070 CTGTATGTACATAGGGGGCCT 58.379 52.381 15.93 0.00 35.36 5.19
176 177 1.003233 GCTGTATGTACATAGGGGGCC 59.997 57.143 15.93 0.00 35.36 5.80
177 178 1.003233 GGCTGTATGTACATAGGGGGC 59.997 57.143 15.93 15.52 35.36 5.80
178 179 1.628846 GGGCTGTATGTACATAGGGGG 59.371 57.143 15.93 7.65 35.36 5.40
179 180 2.038557 GTGGGCTGTATGTACATAGGGG 59.961 54.545 15.93 9.85 35.36 4.79
180 181 2.703536 TGTGGGCTGTATGTACATAGGG 59.296 50.000 15.93 12.09 35.36 3.53
220 221 2.704065 GCCTTCTAGGTTATGGGCTGTA 59.296 50.000 0.00 0.00 37.80 2.74
229 230 6.675303 AGTTAATAACTGGGCCTTCTAGGTTA 59.325 38.462 4.66 5.34 41.01 2.85
276 277 4.410400 GTTCGTCCCCAGCCCAGG 62.410 72.222 0.00 0.00 0.00 4.45
277 278 4.760047 CGTTCGTCCCCAGCCCAG 62.760 72.222 0.00 0.00 0.00 4.45
279 280 3.325201 ATTCGTTCGTCCCCAGCCC 62.325 63.158 0.00 0.00 0.00 5.19
280 281 1.814169 GATTCGTTCGTCCCCAGCC 60.814 63.158 0.00 0.00 0.00 4.85
281 282 1.814169 GGATTCGTTCGTCCCCAGC 60.814 63.158 0.00 0.00 0.00 4.85
282 283 0.460284 CTGGATTCGTTCGTCCCCAG 60.460 60.000 0.00 0.00 35.75 4.45
289 290 1.079127 ACTGGGCTGGATTCGTTCG 60.079 57.895 0.00 0.00 0.00 3.95
366 367 4.087892 CCCACGCTCAGGTCAGGG 62.088 72.222 0.00 0.00 0.00 4.45
506 510 1.383456 GCTGTCTGGTGTTGTTGGCA 61.383 55.000 0.00 0.00 0.00 4.92
585 590 4.831314 TCCATAGGGGAGAGATTGATTGA 58.169 43.478 0.00 0.00 42.15 2.57
652 657 3.636153 ATTTCCCTCAGCTAAGGTGAC 57.364 47.619 1.12 0.00 35.04 3.67
662 667 7.663493 GGATGACCTAATTAGAATTTCCCTCAG 59.337 40.741 14.28 0.00 0.00 3.35
668 673 6.990349 TGACCGGATGACCTAATTAGAATTTC 59.010 38.462 9.46 5.67 0.00 2.17
688 693 4.082300 TCCAATTGACAAAATCCATGACCG 60.082 41.667 7.12 0.00 0.00 4.79
704 723 8.830201 TTTCAGTACAAAATCCAATCCAATTG 57.170 30.769 0.00 0.00 39.94 2.32
707 726 9.527157 TCTATTTCAGTACAAAATCCAATCCAA 57.473 29.630 8.90 0.00 0.00 3.53
708 727 9.527157 TTCTATTTCAGTACAAAATCCAATCCA 57.473 29.630 8.90 0.00 0.00 3.41
713 732 9.638239 GCATTTTCTATTTCAGTACAAAATCCA 57.362 29.630 8.90 0.00 0.00 3.41
714 733 9.087424 GGCATTTTCTATTTCAGTACAAAATCC 57.913 33.333 8.90 4.22 0.00 3.01
715 734 9.087424 GGGCATTTTCTATTTCAGTACAAAATC 57.913 33.333 8.90 0.14 0.00 2.17
716 735 8.815912 AGGGCATTTTCTATTTCAGTACAAAAT 58.184 29.630 10.10 10.10 0.00 1.82
717 736 8.189119 AGGGCATTTTCTATTTCAGTACAAAA 57.811 30.769 0.00 0.00 0.00 2.44
718 737 7.775053 AGGGCATTTTCTATTTCAGTACAAA 57.225 32.000 0.00 0.00 0.00 2.83
719 738 7.775053 AAGGGCATTTTCTATTTCAGTACAA 57.225 32.000 0.00 0.00 0.00 2.41
720 739 7.775053 AAAGGGCATTTTCTATTTCAGTACA 57.225 32.000 0.00 0.00 0.00 2.90
721 740 8.736244 TGTAAAGGGCATTTTCTATTTCAGTAC 58.264 33.333 1.20 0.00 32.01 2.73
722 741 8.871629 TGTAAAGGGCATTTTCTATTTCAGTA 57.128 30.769 1.20 0.00 32.01 2.74
822 841 7.827819 TCTAATCAGTACAGAAATTCGGTTG 57.172 36.000 3.83 0.00 0.00 3.77
851 870 7.840931 TCTTCTTCACATTAGCTCACAAGATA 58.159 34.615 0.00 0.00 0.00 1.98
1163 1182 0.179936 CTCTTGCCTGACCTCATCCC 59.820 60.000 0.00 0.00 0.00 3.85
1164 1183 1.198713 TCTCTTGCCTGACCTCATCC 58.801 55.000 0.00 0.00 0.00 3.51
1167 1186 0.251354 GCATCTCTTGCCTGACCTCA 59.749 55.000 0.00 0.00 46.15 3.86
1462 1481 1.380524 CTGAGGCCAATGCTCTCAAG 58.619 55.000 5.01 0.00 41.28 3.02
1708 1727 5.104610 ACACGGTAGGAGTAGAGATCACTAA 60.105 44.000 1.08 0.00 0.00 2.24
1929 1962 3.798337 CAGAGTGTTCCAACAACAAATGC 59.202 43.478 0.00 0.00 41.21 3.56
1947 1980 1.139853 GAATGTAGCTCCCCACCAGAG 59.860 57.143 0.00 0.00 0.00 3.35
2006 2039 7.445707 GGTTCAGAAAAAGATCAAGTAACTCCT 59.554 37.037 0.00 0.00 0.00 3.69
2123 2156 6.436261 CATCCATGAGAATCCAAAATCTTCG 58.564 40.000 0.00 0.00 0.00 3.79
2391 2424 2.485122 GCGCCTTTTCCACGGATG 59.515 61.111 0.00 0.00 0.00 3.51
2484 2517 1.067669 TGATTCAGAATCCGAGGAGCG 59.932 52.381 18.80 0.00 37.09 5.03
2682 2715 0.033405 AGGAAGCTAGGACCGTGCTA 60.033 55.000 13.31 0.00 35.85 3.49
2883 2923 3.719268 TGGGCTAGAAATGCAGAAAGA 57.281 42.857 0.00 0.00 0.00 2.52
2901 2941 7.148306 GGTTGTACTACCTGAATAATGTGTTGG 60.148 40.741 17.94 0.00 35.23 3.77
2947 2992 5.620738 AGAGAACTGGCATACATACATGT 57.379 39.130 2.69 2.69 44.48 3.21
2951 2996 5.880332 TCCAAAAGAGAACTGGCATACATAC 59.120 40.000 0.00 0.00 0.00 2.39
2952 2997 6.061022 TCCAAAAGAGAACTGGCATACATA 57.939 37.500 0.00 0.00 0.00 2.29
2953 2998 4.922206 TCCAAAAGAGAACTGGCATACAT 58.078 39.130 0.00 0.00 0.00 2.29
2954 2999 4.365514 TCCAAAAGAGAACTGGCATACA 57.634 40.909 0.00 0.00 0.00 2.29
3034 3080 2.984471 CAATGCGATGATAAATGCCAGC 59.016 45.455 0.00 0.00 0.00 4.85
3050 3123 3.670055 CCATGACGTCAAAAGAACAATGC 59.330 43.478 24.13 0.00 0.00 3.56
3134 3208 7.476540 TTGAATACTGCTAAGACCAACTCTA 57.523 36.000 0.00 0.00 0.00 2.43
3173 3248 7.008021 ACCAAAATGAGCCAACAGAAATTAT 57.992 32.000 0.00 0.00 0.00 1.28
3174 3249 6.418057 ACCAAAATGAGCCAACAGAAATTA 57.582 33.333 0.00 0.00 0.00 1.40
3226 3301 2.356125 GCAGGACATTAGGAGAAGGCAA 60.356 50.000 0.00 0.00 0.00 4.52
3307 3389 7.650834 TGTTTTTCTCCAGTTTGTTTCTTTG 57.349 32.000 0.00 0.00 0.00 2.77
3360 3443 7.633193 AAAACAAACACTCCACACTATACAA 57.367 32.000 0.00 0.00 0.00 2.41
3362 3445 7.172703 AGCTAAAACAAACACTCCACACTATAC 59.827 37.037 0.00 0.00 0.00 1.47
3387 3474 8.815189 CACACATGACTCTGAATAAATAGTGAG 58.185 37.037 0.00 0.00 0.00 3.51
3393 3480 6.475504 TGGACACACATGACTCTGAATAAAT 58.524 36.000 0.00 0.00 0.00 1.40
3417 3504 5.198602 AGCATGATTCCTACTTTTCCCTT 57.801 39.130 0.00 0.00 0.00 3.95
3421 3508 9.860898 AAAATTGTAGCATGATTCCTACTTTTC 57.139 29.630 0.00 0.00 35.95 2.29
3628 3772 4.700213 CCCTTCAGATTTGTGTACGGATTT 59.300 41.667 0.00 0.00 0.00 2.17
3641 3785 2.122768 CCTAGCTGGACCCTTCAGATT 58.877 52.381 0.00 0.00 38.35 2.40
3642 3786 1.292242 TCCTAGCTGGACCCTTCAGAT 59.708 52.381 0.00 0.00 40.56 2.90
3643 3787 0.710588 TCCTAGCTGGACCCTTCAGA 59.289 55.000 0.00 0.00 40.56 3.27
3644 3788 1.573108 TTCCTAGCTGGACCCTTCAG 58.427 55.000 0.00 0.00 46.14 3.02
3645 3789 2.038863 TTTCCTAGCTGGACCCTTCA 57.961 50.000 0.00 0.00 46.14 3.02
3646 3790 3.434940 TTTTTCCTAGCTGGACCCTTC 57.565 47.619 0.00 0.00 46.14 3.46
3663 3807 5.118286 CAAGTGGGTGCTCTTGAAATTTTT 58.882 37.500 0.00 0.00 42.22 1.94
3664 3808 4.162131 ACAAGTGGGTGCTCTTGAAATTTT 59.838 37.500 11.07 0.00 42.22 1.82
3665 3809 3.706086 ACAAGTGGGTGCTCTTGAAATTT 59.294 39.130 11.07 0.00 42.22 1.82
3666 3810 3.299503 ACAAGTGGGTGCTCTTGAAATT 58.700 40.909 11.07 0.00 42.22 1.82
3667 3811 2.949447 ACAAGTGGGTGCTCTTGAAAT 58.051 42.857 11.07 0.00 42.22 2.17
3668 3812 2.435372 ACAAGTGGGTGCTCTTGAAA 57.565 45.000 11.07 0.00 42.22 2.69
3669 3813 2.438021 ACTACAAGTGGGTGCTCTTGAA 59.562 45.455 11.07 0.00 42.22 2.69
3670 3814 2.037251 GACTACAAGTGGGTGCTCTTGA 59.963 50.000 11.07 0.00 42.22 3.02
3671 3815 2.037772 AGACTACAAGTGGGTGCTCTTG 59.962 50.000 0.00 0.00 44.29 3.02
3672 3816 2.330216 AGACTACAAGTGGGTGCTCTT 58.670 47.619 0.00 0.00 0.00 2.85
3673 3817 2.016905 AGACTACAAGTGGGTGCTCT 57.983 50.000 0.00 0.00 0.00 4.09
3674 3818 2.808543 CAAAGACTACAAGTGGGTGCTC 59.191 50.000 0.00 0.00 0.00 4.26
3675 3819 2.438021 TCAAAGACTACAAGTGGGTGCT 59.562 45.455 0.00 0.00 0.00 4.40
3676 3820 2.548480 GTCAAAGACTACAAGTGGGTGC 59.452 50.000 0.00 0.00 0.00 5.01
3677 3821 4.058817 GAGTCAAAGACTACAAGTGGGTG 58.941 47.826 0.00 0.00 43.53 4.61
3678 3822 3.071167 GGAGTCAAAGACTACAAGTGGGT 59.929 47.826 4.54 0.00 43.53 4.51
3679 3823 3.665190 GGAGTCAAAGACTACAAGTGGG 58.335 50.000 4.54 0.00 43.53 4.61
3686 3830 7.604164 TCTGAATGAATTGGAGTCAAAGACTAC 59.396 37.037 2.41 2.41 43.53 2.73
3687 3831 7.679783 TCTGAATGAATTGGAGTCAAAGACTA 58.320 34.615 0.00 0.00 43.53 2.59
3688 3832 6.537355 TCTGAATGAATTGGAGTCAAAGACT 58.463 36.000 0.00 0.00 46.42 3.24
3689 3833 6.622462 GCTCTGAATGAATTGGAGTCAAAGAC 60.622 42.308 0.00 0.00 36.36 3.01
3690 3834 5.413833 GCTCTGAATGAATTGGAGTCAAAGA 59.586 40.000 0.00 0.00 36.36 2.52
3691 3835 5.415077 AGCTCTGAATGAATTGGAGTCAAAG 59.585 40.000 0.00 0.00 36.36 2.77
3692 3836 5.319453 AGCTCTGAATGAATTGGAGTCAAA 58.681 37.500 0.00 0.00 36.36 2.69
3693 3837 4.914983 AGCTCTGAATGAATTGGAGTCAA 58.085 39.130 0.00 0.00 37.28 3.18
3694 3838 4.564782 AGCTCTGAATGAATTGGAGTCA 57.435 40.909 0.00 0.00 0.00 3.41
3695 3839 5.182760 ACAAAGCTCTGAATGAATTGGAGTC 59.817 40.000 0.00 0.00 0.00 3.36
3696 3840 5.075493 ACAAAGCTCTGAATGAATTGGAGT 58.925 37.500 0.00 0.00 0.00 3.85
3697 3841 5.182570 TGACAAAGCTCTGAATGAATTGGAG 59.817 40.000 0.00 0.00 0.00 3.86
3698 3842 5.072055 TGACAAAGCTCTGAATGAATTGGA 58.928 37.500 0.00 0.00 0.00 3.53
3699 3843 5.381174 TGACAAAGCTCTGAATGAATTGG 57.619 39.130 0.00 0.00 0.00 3.16
3700 3844 7.701078 CCTAATGACAAAGCTCTGAATGAATTG 59.299 37.037 0.00 0.00 0.00 2.32
3701 3845 7.147949 CCCTAATGACAAAGCTCTGAATGAATT 60.148 37.037 0.00 0.00 0.00 2.17
3702 3846 6.320672 CCCTAATGACAAAGCTCTGAATGAAT 59.679 38.462 0.00 0.00 0.00 2.57
3703 3847 5.649395 CCCTAATGACAAAGCTCTGAATGAA 59.351 40.000 0.00 0.00 0.00 2.57
3704 3848 5.045651 TCCCTAATGACAAAGCTCTGAATGA 60.046 40.000 0.00 0.00 0.00 2.57
3705 3849 5.188434 TCCCTAATGACAAAGCTCTGAATG 58.812 41.667 0.00 0.00 0.00 2.67
3706 3850 5.435291 CTCCCTAATGACAAAGCTCTGAAT 58.565 41.667 0.00 0.00 0.00 2.57
3707 3851 4.323792 CCTCCCTAATGACAAAGCTCTGAA 60.324 45.833 0.00 0.00 0.00 3.02
3708 3852 3.198635 CCTCCCTAATGACAAAGCTCTGA 59.801 47.826 0.00 0.00 0.00 3.27
3709 3853 3.539604 CCTCCCTAATGACAAAGCTCTG 58.460 50.000 0.00 0.00 0.00 3.35
3710 3854 2.507471 CCCTCCCTAATGACAAAGCTCT 59.493 50.000 0.00 0.00 0.00 4.09
3711 3855 2.505819 TCCCTCCCTAATGACAAAGCTC 59.494 50.000 0.00 0.00 0.00 4.09
3712 3856 2.562296 TCCCTCCCTAATGACAAAGCT 58.438 47.619 0.00 0.00 0.00 3.74
3713 3857 3.366052 TTCCCTCCCTAATGACAAAGC 57.634 47.619 0.00 0.00 0.00 3.51
3714 3858 3.633986 GCATTCCCTCCCTAATGACAAAG 59.366 47.826 0.00 0.00 35.53 2.77
3715 3859 3.269381 AGCATTCCCTCCCTAATGACAAA 59.731 43.478 0.00 0.00 35.53 2.83
3716 3860 2.852449 AGCATTCCCTCCCTAATGACAA 59.148 45.455 0.00 0.00 35.53 3.18
3717 3861 2.173356 CAGCATTCCCTCCCTAATGACA 59.827 50.000 0.00 0.00 35.53 3.58
3718 3862 2.856222 CAGCATTCCCTCCCTAATGAC 58.144 52.381 0.00 0.00 35.53 3.06
3719 3863 1.143684 GCAGCATTCCCTCCCTAATGA 59.856 52.381 0.00 0.00 35.53 2.57
3720 3864 1.133699 TGCAGCATTCCCTCCCTAATG 60.134 52.381 0.00 0.00 36.40 1.90
3721 3865 1.225373 TGCAGCATTCCCTCCCTAAT 58.775 50.000 0.00 0.00 0.00 1.73
3722 3866 0.998928 TTGCAGCATTCCCTCCCTAA 59.001 50.000 0.00 0.00 0.00 2.69
3723 3867 1.133699 CATTGCAGCATTCCCTCCCTA 60.134 52.381 0.00 0.00 0.00 3.53
3724 3868 0.396695 CATTGCAGCATTCCCTCCCT 60.397 55.000 0.00 0.00 0.00 4.20
3725 3869 2.024590 GCATTGCAGCATTCCCTCCC 62.025 60.000 3.15 0.00 0.00 4.30
3726 3870 1.324740 TGCATTGCAGCATTCCCTCC 61.325 55.000 7.38 0.00 40.11 4.30
3727 3871 2.195389 TGCATTGCAGCATTCCCTC 58.805 52.632 7.38 0.00 40.11 4.30
3728 3872 4.445832 TGCATTGCAGCATTCCCT 57.554 50.000 7.38 0.00 40.11 4.20
3735 3879 2.159282 AGCTTACTGAATGCATTGCAGC 60.159 45.455 25.72 19.82 43.65 5.25
3736 3880 3.128068 TGAGCTTACTGAATGCATTGCAG 59.872 43.478 24.86 24.86 43.65 4.41
3737 3881 3.083293 TGAGCTTACTGAATGCATTGCA 58.917 40.909 18.59 14.72 44.86 4.08
3738 3882 3.770263 TGAGCTTACTGAATGCATTGC 57.230 42.857 18.59 12.76 0.00 3.56
3739 3883 5.946298 TCTTTGAGCTTACTGAATGCATTG 58.054 37.500 18.59 5.89 0.00 2.82
3740 3884 6.579666 TTCTTTGAGCTTACTGAATGCATT 57.420 33.333 12.83 12.83 0.00 3.56
3741 3885 6.579666 TTTCTTTGAGCTTACTGAATGCAT 57.420 33.333 0.00 0.00 0.00 3.96
3742 3886 6.183360 TGTTTTCTTTGAGCTTACTGAATGCA 60.183 34.615 0.00 0.00 0.00 3.96
3743 3887 6.142958 GTGTTTTCTTTGAGCTTACTGAATGC 59.857 38.462 0.00 0.00 0.00 3.56
3744 3888 7.195646 TGTGTTTTCTTTGAGCTTACTGAATG 58.804 34.615 0.00 0.00 0.00 2.67
3745 3889 7.333528 TGTGTTTTCTTTGAGCTTACTGAAT 57.666 32.000 0.00 0.00 0.00 2.57
3746 3890 6.751514 TGTGTTTTCTTTGAGCTTACTGAA 57.248 33.333 0.00 0.00 0.00 3.02
3747 3891 6.751514 TTGTGTTTTCTTTGAGCTTACTGA 57.248 33.333 0.00 0.00 0.00 3.41
3748 3892 7.029563 ACTTTGTGTTTTCTTTGAGCTTACTG 58.970 34.615 0.00 0.00 0.00 2.74
3749 3893 7.158099 ACTTTGTGTTTTCTTTGAGCTTACT 57.842 32.000 0.00 0.00 0.00 2.24
3750 3894 6.194692 CGACTTTGTGTTTTCTTTGAGCTTAC 59.805 38.462 0.00 0.00 0.00 2.34
3751 3895 6.255215 CGACTTTGTGTTTTCTTTGAGCTTA 58.745 36.000 0.00 0.00 0.00 3.09
3752 3896 5.095490 CGACTTTGTGTTTTCTTTGAGCTT 58.905 37.500 0.00 0.00 0.00 3.74
3753 3897 4.662145 CGACTTTGTGTTTTCTTTGAGCT 58.338 39.130 0.00 0.00 0.00 4.09
3754 3898 3.240631 GCGACTTTGTGTTTTCTTTGAGC 59.759 43.478 0.00 0.00 0.00 4.26
3755 3899 4.411327 TGCGACTTTGTGTTTTCTTTGAG 58.589 39.130 0.00 0.00 0.00 3.02
3756 3900 4.427096 TGCGACTTTGTGTTTTCTTTGA 57.573 36.364 0.00 0.00 0.00 2.69
3757 3901 4.621034 AGTTGCGACTTTGTGTTTTCTTTG 59.379 37.500 0.00 0.00 29.87 2.77
3758 3902 4.805219 AGTTGCGACTTTGTGTTTTCTTT 58.195 34.783 0.00 0.00 29.87 2.52
3759 3903 4.156008 AGAGTTGCGACTTTGTGTTTTCTT 59.844 37.500 8.34 0.00 35.88 2.52
3765 3909 3.427503 CCAAAAGAGTTGCGACTTTGTGT 60.428 43.478 8.34 0.00 35.88 3.72
3775 3919 7.945033 TCAAATTTATCACCAAAAGAGTTGC 57.055 32.000 0.00 0.00 0.00 4.17
3821 3966 8.338259 GTTCAGTTCATGAGCGTATGATAAAAT 58.662 33.333 3.72 0.00 39.68 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.