Multiple sequence alignment - TraesCS1D01G067700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G067700 chr1D 100.000 4120 0 0 1 4120 49585130 49589249 0.000000e+00 7609.0
1 TraesCS1D01G067700 chr1B 94.089 3671 158 27 472 4120 69823662 69827295 0.000000e+00 5522.0
2 TraesCS1D01G067700 chr1A 94.295 1525 71 12 2599 4120 49098253 49099764 0.000000e+00 2320.0
3 TraesCS1D01G067700 chr1A 95.274 1333 47 6 589 1920 49096254 49097571 0.000000e+00 2098.0
4 TraesCS1D01G067700 chr1A 94.677 620 24 5 1990 2601 49097606 49098224 0.000000e+00 953.0
5 TraesCS1D01G067700 chr4B 82.353 85 12 2 340 424 383647110 383647029 2.050000e-08 71.3
6 TraesCS1D01G067700 chr4B 92.857 42 0 2 384 425 66802903 66802941 1.600000e-04 58.4
7 TraesCS1D01G067700 chr7D 88.235 51 1 5 395 442 42508016 42507968 5.750000e-04 56.5
8 TraesCS1D01G067700 chr7D 100.000 29 0 0 395 423 575506548 575506520 2.000000e-03 54.7
9 TraesCS1D01G067700 chr7B 100.000 29 0 0 395 423 727614491 727614519 2.000000e-03 54.7
10 TraesCS1D01G067700 chr7B 100.000 28 0 0 395 422 700684789 700684762 7.000000e-03 52.8
11 TraesCS1D01G067700 chr4A 96.875 32 1 0 392 423 611444296 611444327 2.000000e-03 54.7
12 TraesCS1D01G067700 chr2B 89.130 46 2 1 384 429 38840767 38840725 2.000000e-03 54.7
13 TraesCS1D01G067700 chr2A 94.286 35 2 0 391 425 778441657 778441623 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G067700 chr1D 49585130 49589249 4119 False 7609.000000 7609 100.000000 1 4120 1 chr1D.!!$F1 4119
1 TraesCS1D01G067700 chr1B 69823662 69827295 3633 False 5522.000000 5522 94.089000 472 4120 1 chr1B.!!$F1 3648
2 TraesCS1D01G067700 chr1A 49096254 49099764 3510 False 1790.333333 2320 94.748667 589 4120 3 chr1A.!!$F1 3531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.031994 CGCCCAAACAAAGACCAAGG 59.968 55.0 0.00 0.00 0.0 3.61 F
198 199 0.037790 CCTCTATAGAAGCGCTGCCC 60.038 60.0 12.58 3.21 0.0 5.36 F
227 228 0.103208 ACTCGCCTCTCATTTAGCCG 59.897 55.0 0.00 0.00 0.0 5.52 F
248 249 0.106894 GATAAGGGAGCAACGGAGGG 59.893 60.0 0.00 0.00 0.0 4.30 F
410 411 0.107459 GAAGAAGAGAGGCGGGCAAT 60.107 55.0 3.78 0.00 0.0 3.56 F
525 526 0.178981 GCATATGACATGGGGTGCCT 60.179 55.0 6.97 0.00 0.0 4.75 F
688 689 0.179089 CACCGATCTTCAGAGGGCAG 60.179 60.0 0.00 0.00 0.0 4.85 F
2858 2912 0.469494 TGCGGCCATACATGAGTGAT 59.531 50.0 2.24 0.00 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1197 1199 1.336240 GGACAAGCATGCCAACAAGAC 60.336 52.381 15.66 0.00 0.00 3.01 R
1728 1731 1.507141 AACTCGCGGTTGCCTTGAAG 61.507 55.000 6.13 0.00 36.70 3.02 R
2090 2106 3.198635 AGTGATGCTATACTGTTGCCTGT 59.801 43.478 0.00 0.00 0.00 4.00 R
2218 2238 5.419155 CGTGGGCTATCTTCATCCTTCTATA 59.581 44.000 0.00 0.00 0.00 1.31 R
2544 2564 2.704725 TTTGATCGCTTGCTGGTTTC 57.295 45.000 0.00 0.00 0.00 2.78 R
2603 2623 3.525199 AGCATTCTGTATGGGGAAGAAGT 59.475 43.478 0.00 0.00 33.67 3.01 R
2919 2973 0.658897 TGTTTCTTTTGGGACGCGAC 59.341 50.000 15.93 6.56 0.00 5.19 R
4015 4082 2.092968 AGTTGCACTTGAGGTCAGAACA 60.093 45.455 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.251600 CACACCCAAGAGAGCAAGC 58.748 57.895 0.00 0.00 0.00 4.01
19 20 1.073897 ACACCCAAGAGAGCAAGCC 59.926 57.895 0.00 0.00 0.00 4.35
20 21 1.676967 CACCCAAGAGAGCAAGCCC 60.677 63.158 0.00 0.00 0.00 5.19
21 22 1.849823 ACCCAAGAGAGCAAGCCCT 60.850 57.895 0.00 0.00 0.00 5.19
22 23 1.378250 CCCAAGAGAGCAAGCCCTG 60.378 63.158 0.00 0.00 0.00 4.45
30 31 2.283460 GCAAGCCCTGCCCTTTCT 60.283 61.111 0.00 0.00 46.13 2.52
31 32 2.346541 GCAAGCCCTGCCCTTTCTC 61.347 63.158 0.00 0.00 46.13 2.87
32 33 1.381851 CAAGCCCTGCCCTTTCTCT 59.618 57.895 0.00 0.00 0.00 3.10
33 34 0.679321 CAAGCCCTGCCCTTTCTCTC 60.679 60.000 0.00 0.00 0.00 3.20
34 35 0.844221 AAGCCCTGCCCTTTCTCTCT 60.844 55.000 0.00 0.00 0.00 3.10
35 36 0.844221 AGCCCTGCCCTTTCTCTCTT 60.844 55.000 0.00 0.00 0.00 2.85
36 37 0.038890 GCCCTGCCCTTTCTCTCTTT 59.961 55.000 0.00 0.00 0.00 2.52
37 38 1.952839 GCCCTGCCCTTTCTCTCTTTC 60.953 57.143 0.00 0.00 0.00 2.62
38 39 1.632920 CCCTGCCCTTTCTCTCTTTCT 59.367 52.381 0.00 0.00 0.00 2.52
39 40 2.840651 CCCTGCCCTTTCTCTCTTTCTA 59.159 50.000 0.00 0.00 0.00 2.10
40 41 3.369997 CCCTGCCCTTTCTCTCTTTCTAC 60.370 52.174 0.00 0.00 0.00 2.59
41 42 3.517500 CCTGCCCTTTCTCTCTTTCTACT 59.482 47.826 0.00 0.00 0.00 2.57
42 43 4.382577 CCTGCCCTTTCTCTCTTTCTACTC 60.383 50.000 0.00 0.00 0.00 2.59
43 44 3.515901 TGCCCTTTCTCTCTTTCTACTCC 59.484 47.826 0.00 0.00 0.00 3.85
44 45 3.429684 GCCCTTTCTCTCTTTCTACTCCG 60.430 52.174 0.00 0.00 0.00 4.63
45 46 3.429684 CCCTTTCTCTCTTTCTACTCCGC 60.430 52.174 0.00 0.00 0.00 5.54
46 47 3.429684 CCTTTCTCTCTTTCTACTCCGCC 60.430 52.174 0.00 0.00 0.00 6.13
47 48 1.765230 TCTCTCTTTCTACTCCGCCC 58.235 55.000 0.00 0.00 0.00 6.13
48 49 0.747852 CTCTCTTTCTACTCCGCCCC 59.252 60.000 0.00 0.00 0.00 5.80
49 50 0.686769 TCTCTTTCTACTCCGCCCCC 60.687 60.000 0.00 0.00 0.00 5.40
50 51 0.688087 CTCTTTCTACTCCGCCCCCT 60.688 60.000 0.00 0.00 0.00 4.79
51 52 0.686769 TCTTTCTACTCCGCCCCCTC 60.687 60.000 0.00 0.00 0.00 4.30
52 53 0.688087 CTTTCTACTCCGCCCCCTCT 60.688 60.000 0.00 0.00 0.00 3.69
53 54 0.686769 TTTCTACTCCGCCCCCTCTC 60.687 60.000 0.00 0.00 0.00 3.20
54 55 1.581923 TTCTACTCCGCCCCCTCTCT 61.582 60.000 0.00 0.00 0.00 3.10
55 56 1.529713 CTACTCCGCCCCCTCTCTC 60.530 68.421 0.00 0.00 0.00 3.20
56 57 2.002018 CTACTCCGCCCCCTCTCTCT 62.002 65.000 0.00 0.00 0.00 3.10
57 58 2.285889 TACTCCGCCCCCTCTCTCTG 62.286 65.000 0.00 0.00 0.00 3.35
60 61 3.535962 CGCCCCCTCTCTCTGCTC 61.536 72.222 0.00 0.00 0.00 4.26
61 62 2.042025 GCCCCCTCTCTCTGCTCT 60.042 66.667 0.00 0.00 0.00 4.09
62 63 2.133641 GCCCCCTCTCTCTGCTCTC 61.134 68.421 0.00 0.00 0.00 3.20
63 64 1.309347 CCCCCTCTCTCTGCTCTCA 59.691 63.158 0.00 0.00 0.00 3.27
64 65 0.756442 CCCCCTCTCTCTGCTCTCAG 60.756 65.000 0.00 0.00 41.67 3.35
65 66 0.258484 CCCCTCTCTCTGCTCTCAGA 59.742 60.000 0.00 0.00 46.43 3.27
71 72 4.344237 TCTGCTCTCAGATGGCGA 57.656 55.556 0.00 0.00 43.95 5.54
72 73 1.812525 TCTGCTCTCAGATGGCGAC 59.187 57.895 0.00 0.00 43.95 5.19
73 74 0.682532 TCTGCTCTCAGATGGCGACT 60.683 55.000 0.00 0.00 43.95 4.18
74 75 0.248990 CTGCTCTCAGATGGCGACTC 60.249 60.000 0.00 0.00 42.95 3.36
75 76 1.067250 GCTCTCAGATGGCGACTCC 59.933 63.158 0.00 0.00 0.00 3.85
83 84 4.979204 TGGCGACTCCACGTAAAG 57.021 55.556 0.00 0.00 40.72 1.85
84 85 1.290955 TGGCGACTCCACGTAAAGG 59.709 57.895 0.00 0.00 40.72 3.11
85 86 1.447314 GGCGACTCCACGTAAAGGG 60.447 63.158 0.00 0.00 35.59 3.95
86 87 1.291272 GCGACTCCACGTAAAGGGT 59.709 57.895 0.00 0.00 35.59 4.34
87 88 1.012486 GCGACTCCACGTAAAGGGTG 61.012 60.000 0.00 0.00 35.59 4.61
92 93 2.031465 CACGTAAAGGGTGGCGGT 59.969 61.111 0.00 0.00 0.00 5.68
93 94 2.031465 ACGTAAAGGGTGGCGGTG 59.969 61.111 0.00 0.00 0.00 4.94
94 95 2.344500 CGTAAAGGGTGGCGGTGA 59.656 61.111 0.00 0.00 0.00 4.02
95 96 1.740296 CGTAAAGGGTGGCGGTGAG 60.740 63.158 0.00 0.00 0.00 3.51
105 106 2.639286 GCGGTGAGCCAACAACTG 59.361 61.111 0.00 0.00 40.81 3.16
106 107 2.639286 CGGTGAGCCAACAACTGC 59.361 61.111 0.00 0.00 34.09 4.40
107 108 2.639286 GGTGAGCCAACAACTGCG 59.361 61.111 0.00 0.00 34.09 5.18
108 109 2.639286 GTGAGCCAACAACTGCGG 59.361 61.111 0.00 0.00 0.00 5.69
109 110 1.891919 GTGAGCCAACAACTGCGGA 60.892 57.895 0.00 0.00 0.00 5.54
110 111 1.597854 TGAGCCAACAACTGCGGAG 60.598 57.895 0.85 0.85 0.00 4.63
132 133 2.909965 GCCTCCACGCCCAAACAA 60.910 61.111 0.00 0.00 0.00 2.83
133 134 2.494530 GCCTCCACGCCCAAACAAA 61.495 57.895 0.00 0.00 0.00 2.83
134 135 1.659794 CCTCCACGCCCAAACAAAG 59.340 57.895 0.00 0.00 0.00 2.77
135 136 0.821711 CCTCCACGCCCAAACAAAGA 60.822 55.000 0.00 0.00 0.00 2.52
136 137 0.310854 CTCCACGCCCAAACAAAGAC 59.689 55.000 0.00 0.00 0.00 3.01
137 138 1.104577 TCCACGCCCAAACAAAGACC 61.105 55.000 0.00 0.00 0.00 3.85
138 139 1.388065 CCACGCCCAAACAAAGACCA 61.388 55.000 0.00 0.00 0.00 4.02
139 140 0.457851 CACGCCCAAACAAAGACCAA 59.542 50.000 0.00 0.00 0.00 3.67
140 141 0.744281 ACGCCCAAACAAAGACCAAG 59.256 50.000 0.00 0.00 0.00 3.61
141 142 0.031994 CGCCCAAACAAAGACCAAGG 59.968 55.000 0.00 0.00 0.00 3.61
142 143 1.119684 GCCCAAACAAAGACCAAGGT 58.880 50.000 0.00 0.00 0.00 3.50
143 144 1.068588 GCCCAAACAAAGACCAAGGTC 59.931 52.381 11.29 11.29 44.86 3.85
151 152 4.329545 GACCAAGGTCGCCCTGCA 62.330 66.667 3.08 0.00 41.56 4.41
152 153 4.643387 ACCAAGGTCGCCCTGCAC 62.643 66.667 0.00 0.00 41.56 4.57
154 155 4.641645 CAAGGTCGCCCTGCACCA 62.642 66.667 0.00 0.00 41.56 4.17
155 156 4.643387 AAGGTCGCCCTGCACCAC 62.643 66.667 0.00 0.00 41.56 4.16
157 158 4.722700 GGTCGCCCTGCACCACAT 62.723 66.667 0.00 0.00 32.73 3.21
158 159 3.434319 GTCGCCCTGCACCACATG 61.434 66.667 0.00 0.00 0.00 3.21
159 160 3.952508 TCGCCCTGCACCACATGT 61.953 61.111 0.00 0.00 0.00 3.21
160 161 3.434319 CGCCCTGCACCACATGTC 61.434 66.667 0.00 0.00 0.00 3.06
161 162 2.282391 GCCCTGCACCACATGTCA 60.282 61.111 0.00 0.00 0.00 3.58
162 163 2.629656 GCCCTGCACCACATGTCAC 61.630 63.158 0.00 0.00 0.00 3.67
163 164 2.327343 CCCTGCACCACATGTCACG 61.327 63.158 0.00 0.00 0.00 4.35
164 165 1.597854 CCTGCACCACATGTCACGT 60.598 57.895 0.00 0.00 0.00 4.49
165 166 1.568612 CCTGCACCACATGTCACGTC 61.569 60.000 0.00 0.00 0.00 4.34
166 167 0.879839 CTGCACCACATGTCACGTCA 60.880 55.000 0.00 0.00 0.00 4.35
167 168 1.157257 TGCACCACATGTCACGTCAC 61.157 55.000 0.00 0.00 0.00 3.67
168 169 0.880278 GCACCACATGTCACGTCACT 60.880 55.000 0.00 0.00 0.00 3.41
169 170 1.139989 CACCACATGTCACGTCACTC 58.860 55.000 0.00 0.00 0.00 3.51
170 171 0.318699 ACCACATGTCACGTCACTCG 60.319 55.000 0.00 0.00 46.00 4.18
171 172 1.617755 CCACATGTCACGTCACTCGC 61.618 60.000 0.00 0.00 44.19 5.03
172 173 1.372997 ACATGTCACGTCACTCGCC 60.373 57.895 0.00 0.00 44.19 5.54
173 174 2.126463 ATGTCACGTCACTCGCCG 60.126 61.111 0.00 0.00 44.19 6.46
174 175 3.626680 ATGTCACGTCACTCGCCGG 62.627 63.158 0.00 0.00 44.19 6.13
182 183 4.803426 CACTCGCCGGCTGACCTC 62.803 72.222 26.68 0.00 0.00 3.85
184 185 2.829003 CTCGCCGGCTGACCTCTA 60.829 66.667 26.68 0.00 0.00 2.43
185 186 2.123854 TCGCCGGCTGACCTCTAT 60.124 61.111 26.68 0.00 0.00 1.98
186 187 0.889638 CTCGCCGGCTGACCTCTATA 60.890 60.000 26.68 0.00 0.00 1.31
187 188 0.889638 TCGCCGGCTGACCTCTATAG 60.890 60.000 26.68 3.78 0.00 1.31
188 189 0.889638 CGCCGGCTGACCTCTATAGA 60.890 60.000 26.68 1.69 0.00 1.98
189 190 1.329256 GCCGGCTGACCTCTATAGAA 58.671 55.000 22.15 0.00 0.00 2.10
190 191 1.271102 GCCGGCTGACCTCTATAGAAG 59.729 57.143 22.15 0.00 0.00 2.85
191 192 1.271102 CCGGCTGACCTCTATAGAAGC 59.729 57.143 13.56 13.56 0.00 3.86
192 193 1.068885 CGGCTGACCTCTATAGAAGCG 60.069 57.143 14.90 8.81 0.00 4.68
193 194 1.336424 GGCTGACCTCTATAGAAGCGC 60.336 57.143 14.90 0.00 0.00 5.92
194 195 1.611491 GCTGACCTCTATAGAAGCGCT 59.389 52.381 2.64 2.64 0.00 5.92
195 196 2.606795 GCTGACCTCTATAGAAGCGCTG 60.607 54.545 12.58 0.00 0.00 5.18
196 197 1.338337 TGACCTCTATAGAAGCGCTGC 59.662 52.381 12.58 9.98 0.00 5.25
197 198 0.676736 ACCTCTATAGAAGCGCTGCC 59.323 55.000 12.58 6.27 0.00 4.85
198 199 0.037790 CCTCTATAGAAGCGCTGCCC 60.038 60.000 12.58 3.21 0.00 5.36
199 200 0.965439 CTCTATAGAAGCGCTGCCCT 59.035 55.000 12.58 11.69 0.00 5.19
200 201 0.676184 TCTATAGAAGCGCTGCCCTG 59.324 55.000 12.58 0.00 0.00 4.45
201 202 0.948141 CTATAGAAGCGCTGCCCTGC 60.948 60.000 12.58 0.00 0.00 4.85
202 203 1.402896 TATAGAAGCGCTGCCCTGCT 61.403 55.000 12.58 0.00 44.97 4.24
208 209 2.979676 CGCTGCCCTGCTTCACAA 60.980 61.111 0.00 0.00 0.00 3.33
209 210 2.647297 GCTGCCCTGCTTCACAAC 59.353 61.111 0.00 0.00 0.00 3.32
210 211 1.900498 GCTGCCCTGCTTCACAACT 60.900 57.895 0.00 0.00 0.00 3.16
211 212 1.860484 GCTGCCCTGCTTCACAACTC 61.860 60.000 0.00 0.00 0.00 3.01
212 213 1.572085 CTGCCCTGCTTCACAACTCG 61.572 60.000 0.00 0.00 0.00 4.18
213 214 2.970974 GCCCTGCTTCACAACTCGC 61.971 63.158 0.00 0.00 0.00 5.03
214 215 2.328099 CCCTGCTTCACAACTCGCC 61.328 63.158 0.00 0.00 0.00 5.54
215 216 1.302033 CCTGCTTCACAACTCGCCT 60.302 57.895 0.00 0.00 0.00 5.52
216 217 1.294659 CCTGCTTCACAACTCGCCTC 61.295 60.000 0.00 0.00 0.00 4.70
217 218 0.320247 CTGCTTCACAACTCGCCTCT 60.320 55.000 0.00 0.00 0.00 3.69
218 219 0.319900 TGCTTCACAACTCGCCTCTC 60.320 55.000 0.00 0.00 0.00 3.20
219 220 0.319900 GCTTCACAACTCGCCTCTCA 60.320 55.000 0.00 0.00 0.00 3.27
220 221 1.674221 GCTTCACAACTCGCCTCTCAT 60.674 52.381 0.00 0.00 0.00 2.90
221 222 2.693069 CTTCACAACTCGCCTCTCATT 58.307 47.619 0.00 0.00 0.00 2.57
222 223 2.839486 TCACAACTCGCCTCTCATTT 57.161 45.000 0.00 0.00 0.00 2.32
223 224 3.953712 TCACAACTCGCCTCTCATTTA 57.046 42.857 0.00 0.00 0.00 1.40
224 225 3.849911 TCACAACTCGCCTCTCATTTAG 58.150 45.455 0.00 0.00 0.00 1.85
225 226 2.349886 CACAACTCGCCTCTCATTTAGC 59.650 50.000 0.00 0.00 0.00 3.09
226 227 1.936547 CAACTCGCCTCTCATTTAGCC 59.063 52.381 0.00 0.00 0.00 3.93
227 228 0.103208 ACTCGCCTCTCATTTAGCCG 59.897 55.000 0.00 0.00 0.00 5.52
228 229 0.385751 CTCGCCTCTCATTTAGCCGA 59.614 55.000 0.00 0.00 0.00 5.54
229 230 0.385751 TCGCCTCTCATTTAGCCGAG 59.614 55.000 0.00 0.00 0.00 4.63
230 231 0.385751 CGCCTCTCATTTAGCCGAGA 59.614 55.000 0.00 0.00 36.81 4.04
231 232 1.000283 CGCCTCTCATTTAGCCGAGAT 60.000 52.381 0.00 0.00 37.63 2.75
232 233 2.229062 CGCCTCTCATTTAGCCGAGATA 59.771 50.000 0.00 0.00 37.63 1.98
233 234 3.305403 CGCCTCTCATTTAGCCGAGATAA 60.305 47.826 0.00 0.00 37.63 1.75
234 235 4.241681 GCCTCTCATTTAGCCGAGATAAG 58.758 47.826 0.00 0.00 37.63 1.73
235 236 4.815269 CCTCTCATTTAGCCGAGATAAGG 58.185 47.826 0.00 0.00 37.63 2.69
236 237 4.322349 CCTCTCATTTAGCCGAGATAAGGG 60.322 50.000 0.00 0.00 37.63 3.95
237 238 4.480115 TCTCATTTAGCCGAGATAAGGGA 58.520 43.478 0.00 0.00 33.37 4.20
238 239 4.524714 TCTCATTTAGCCGAGATAAGGGAG 59.475 45.833 0.00 0.00 33.37 4.30
239 240 3.006967 TCATTTAGCCGAGATAAGGGAGC 59.993 47.826 0.00 0.00 0.00 4.70
240 241 2.082140 TTAGCCGAGATAAGGGAGCA 57.918 50.000 0.00 0.00 0.00 4.26
241 242 2.082140 TAGCCGAGATAAGGGAGCAA 57.918 50.000 0.00 0.00 0.00 3.91
242 243 0.466124 AGCCGAGATAAGGGAGCAAC 59.534 55.000 0.00 0.00 0.00 4.17
243 244 0.876342 GCCGAGATAAGGGAGCAACG 60.876 60.000 0.00 0.00 0.00 4.10
244 245 0.249489 CCGAGATAAGGGAGCAACGG 60.249 60.000 0.00 0.00 31.62 4.44
245 246 0.744874 CGAGATAAGGGAGCAACGGA 59.255 55.000 0.00 0.00 0.00 4.69
246 247 1.269309 CGAGATAAGGGAGCAACGGAG 60.269 57.143 0.00 0.00 0.00 4.63
247 248 1.069358 GAGATAAGGGAGCAACGGAGG 59.931 57.143 0.00 0.00 0.00 4.30
248 249 0.106894 GATAAGGGAGCAACGGAGGG 59.893 60.000 0.00 0.00 0.00 4.30
249 250 1.345715 ATAAGGGAGCAACGGAGGGG 61.346 60.000 0.00 0.00 0.00 4.79
256 257 3.361977 CAACGGAGGGGCGGTTTG 61.362 66.667 0.00 0.00 37.88 2.93
257 258 3.881104 AACGGAGGGGCGGTTTGT 61.881 61.111 0.00 0.00 36.76 2.83
258 259 4.636435 ACGGAGGGGCGGTTTGTG 62.636 66.667 0.00 0.00 0.00 3.33
274 275 4.263572 TGGGCCCCACAAGACACG 62.264 66.667 22.27 0.00 0.00 4.49
275 276 4.265056 GGGCCCCACAAGACACGT 62.265 66.667 12.23 0.00 0.00 4.49
276 277 2.203294 GGCCCCACAAGACACGTT 60.203 61.111 0.00 0.00 0.00 3.99
277 278 2.551912 GGCCCCACAAGACACGTTG 61.552 63.158 0.00 0.00 0.00 4.10
278 279 1.822186 GCCCCACAAGACACGTTGT 60.822 57.895 0.00 0.00 41.47 3.32
284 285 2.473530 ACAAGACACGTTGTGCATTG 57.526 45.000 11.10 11.10 39.25 2.82
285 286 1.122849 CAAGACACGTTGTGCATTGC 58.877 50.000 0.46 0.46 36.98 3.56
286 287 0.316937 AAGACACGTTGTGCATTGCG 60.317 50.000 3.84 0.00 36.98 4.85
287 288 1.157257 AGACACGTTGTGCATTGCGA 61.157 50.000 12.39 0.00 36.98 5.10
288 289 0.722469 GACACGTTGTGCATTGCGAG 60.722 55.000 12.39 7.85 36.98 5.03
289 290 1.279539 CACGTTGTGCATTGCGAGT 59.720 52.632 12.39 0.00 0.00 4.18
290 291 0.993251 CACGTTGTGCATTGCGAGTG 60.993 55.000 12.39 5.88 0.00 3.51
291 292 1.157257 ACGTTGTGCATTGCGAGTGA 61.157 50.000 12.39 0.00 0.00 3.41
292 293 0.722469 CGTTGTGCATTGCGAGTGAC 60.722 55.000 3.84 0.00 0.00 3.67
293 294 0.385974 GTTGTGCATTGCGAGTGACC 60.386 55.000 3.84 0.00 0.00 4.02
294 295 0.817229 TTGTGCATTGCGAGTGACCA 60.817 50.000 3.84 0.00 0.00 4.02
295 296 1.229975 TGTGCATTGCGAGTGACCAG 61.230 55.000 3.84 0.00 0.00 4.00
296 297 2.327343 TGCATTGCGAGTGACCAGC 61.327 57.895 3.84 0.00 0.00 4.85
297 298 2.327343 GCATTGCGAGTGACCAGCA 61.327 57.895 0.00 0.00 39.33 4.41
309 310 3.578688 GTGACCAGCACAATTCAATTCC 58.421 45.455 0.00 0.00 46.91 3.01
310 311 3.256631 GTGACCAGCACAATTCAATTCCT 59.743 43.478 0.00 0.00 46.91 3.36
311 312 4.458989 GTGACCAGCACAATTCAATTCCTA 59.541 41.667 0.00 0.00 46.91 2.94
312 313 4.701651 TGACCAGCACAATTCAATTCCTAG 59.298 41.667 0.00 0.00 0.00 3.02
313 314 4.666512 ACCAGCACAATTCAATTCCTAGT 58.333 39.130 0.00 0.00 0.00 2.57
314 315 4.702131 ACCAGCACAATTCAATTCCTAGTC 59.298 41.667 0.00 0.00 0.00 2.59
315 316 4.201851 CCAGCACAATTCAATTCCTAGTCG 60.202 45.833 0.00 0.00 0.00 4.18
316 317 3.941483 AGCACAATTCAATTCCTAGTCGG 59.059 43.478 0.00 0.00 0.00 4.79
317 318 3.689649 GCACAATTCAATTCCTAGTCGGT 59.310 43.478 0.00 0.00 0.00 4.69
318 319 4.201822 GCACAATTCAATTCCTAGTCGGTC 60.202 45.833 0.00 0.00 0.00 4.79
319 320 4.032900 CACAATTCAATTCCTAGTCGGTCG 59.967 45.833 0.00 0.00 0.00 4.79
320 321 2.288961 TTCAATTCCTAGTCGGTCGC 57.711 50.000 0.00 0.00 0.00 5.19
321 322 0.458669 TCAATTCCTAGTCGGTCGCC 59.541 55.000 0.00 0.00 0.00 5.54
322 323 0.460311 CAATTCCTAGTCGGTCGCCT 59.540 55.000 0.00 0.00 0.00 5.52
323 324 0.745468 AATTCCTAGTCGGTCGCCTC 59.255 55.000 0.00 0.00 0.00 4.70
324 325 0.395311 ATTCCTAGTCGGTCGCCTCA 60.395 55.000 0.00 0.00 0.00 3.86
325 326 1.310933 TTCCTAGTCGGTCGCCTCAC 61.311 60.000 0.00 0.00 0.00 3.51
326 327 2.044555 CCTAGTCGGTCGCCTCACA 61.045 63.158 0.00 0.00 0.00 3.58
327 328 1.429825 CTAGTCGGTCGCCTCACAG 59.570 63.158 0.00 0.00 0.00 3.66
328 329 1.994507 CTAGTCGGTCGCCTCACAGG 61.995 65.000 0.00 0.00 38.80 4.00
329 330 2.473891 TAGTCGGTCGCCTCACAGGA 62.474 60.000 0.00 0.00 37.67 3.86
330 331 2.599281 TCGGTCGCCTCACAGGAA 60.599 61.111 0.00 0.00 37.67 3.36
331 332 1.982395 TCGGTCGCCTCACAGGAAT 60.982 57.895 0.00 0.00 37.67 3.01
332 333 1.519455 CGGTCGCCTCACAGGAATC 60.519 63.158 0.00 0.00 37.67 2.52
333 334 1.519455 GGTCGCCTCACAGGAATCG 60.519 63.158 0.00 0.00 37.67 3.34
334 335 1.215647 GTCGCCTCACAGGAATCGT 59.784 57.895 0.00 0.00 37.67 3.73
335 336 0.389948 GTCGCCTCACAGGAATCGTT 60.390 55.000 0.00 0.00 37.67 3.85
336 337 0.320374 TCGCCTCACAGGAATCGTTT 59.680 50.000 0.00 0.00 37.67 3.60
337 338 1.156736 CGCCTCACAGGAATCGTTTT 58.843 50.000 0.00 0.00 37.67 2.43
338 339 1.135972 CGCCTCACAGGAATCGTTTTG 60.136 52.381 0.00 0.00 37.67 2.44
339 340 1.401539 GCCTCACAGGAATCGTTTTGC 60.402 52.381 0.00 0.00 37.67 3.68
340 341 2.154462 CCTCACAGGAATCGTTTTGCT 58.846 47.619 0.00 0.00 37.67 3.91
341 342 2.554032 CCTCACAGGAATCGTTTTGCTT 59.446 45.455 0.00 0.00 37.67 3.91
342 343 3.558505 CTCACAGGAATCGTTTTGCTTG 58.441 45.455 0.00 0.00 0.00 4.01
343 344 2.053627 CACAGGAATCGTTTTGCTTGC 58.946 47.619 0.00 0.00 0.00 4.01
344 345 1.956477 ACAGGAATCGTTTTGCTTGCT 59.044 42.857 0.00 0.00 0.00 3.91
345 346 2.362077 ACAGGAATCGTTTTGCTTGCTT 59.638 40.909 0.00 0.00 0.00 3.91
346 347 2.727798 CAGGAATCGTTTTGCTTGCTTG 59.272 45.455 0.00 0.00 0.00 4.01
347 348 1.456923 GGAATCGTTTTGCTTGCTTGC 59.543 47.619 0.00 0.00 0.00 4.01
348 349 2.126467 GAATCGTTTTGCTTGCTTGCA 58.874 42.857 0.27 0.27 41.65 4.08
357 358 2.406130 TGCTTGCTTGCAAGTTTATGC 58.594 42.857 28.63 22.91 46.58 3.14
365 366 3.034569 CAAGTTTATGCGCCTTGCC 57.965 52.632 4.18 0.00 45.60 4.52
366 367 0.243365 CAAGTTTATGCGCCTTGCCA 59.757 50.000 4.18 0.00 45.60 4.92
367 368 0.527565 AAGTTTATGCGCCTTGCCAG 59.472 50.000 4.18 0.00 45.60 4.85
368 369 0.609131 AGTTTATGCGCCTTGCCAGT 60.609 50.000 4.18 0.00 45.60 4.00
369 370 0.243636 GTTTATGCGCCTTGCCAGTT 59.756 50.000 4.18 0.00 45.60 3.16
370 371 0.525761 TTTATGCGCCTTGCCAGTTC 59.474 50.000 4.18 0.00 45.60 3.01
371 372 1.643868 TTATGCGCCTTGCCAGTTCG 61.644 55.000 4.18 0.00 45.60 3.95
376 377 2.361610 CCTTGCCAGTTCGCCCAT 60.362 61.111 0.00 0.00 0.00 4.00
377 378 2.703798 CCTTGCCAGTTCGCCCATG 61.704 63.158 0.00 0.00 0.00 3.66
378 379 1.675310 CTTGCCAGTTCGCCCATGA 60.675 57.895 0.00 0.00 0.00 3.07
379 380 1.228398 TTGCCAGTTCGCCCATGAA 60.228 52.632 0.00 0.00 0.00 2.57
380 381 0.611618 TTGCCAGTTCGCCCATGAAT 60.612 50.000 0.00 0.00 0.00 2.57
381 382 1.031571 TGCCAGTTCGCCCATGAATC 61.032 55.000 0.00 0.00 0.00 2.52
382 383 0.749454 GCCAGTTCGCCCATGAATCT 60.749 55.000 0.00 0.00 0.00 2.40
383 384 1.019673 CCAGTTCGCCCATGAATCTG 58.980 55.000 0.00 0.00 32.06 2.90
384 385 1.407299 CCAGTTCGCCCATGAATCTGA 60.407 52.381 0.00 0.00 33.06 3.27
385 386 2.358957 CAGTTCGCCCATGAATCTGAA 58.641 47.619 0.00 0.00 33.06 3.02
386 387 2.096496 CAGTTCGCCCATGAATCTGAAC 59.904 50.000 0.00 1.43 36.77 3.18
387 388 2.026822 AGTTCGCCCATGAATCTGAACT 60.027 45.455 0.00 3.79 40.69 3.01
388 389 2.028420 TCGCCCATGAATCTGAACTG 57.972 50.000 0.00 0.00 0.00 3.16
389 390 1.554617 TCGCCCATGAATCTGAACTGA 59.445 47.619 0.00 0.00 0.00 3.41
390 391 1.667724 CGCCCATGAATCTGAACTGAC 59.332 52.381 0.00 0.00 0.00 3.51
391 392 1.667724 GCCCATGAATCTGAACTGACG 59.332 52.381 0.00 0.00 0.00 4.35
392 393 2.677902 GCCCATGAATCTGAACTGACGA 60.678 50.000 0.00 0.00 0.00 4.20
393 394 3.599343 CCCATGAATCTGAACTGACGAA 58.401 45.455 0.00 0.00 0.00 3.85
394 395 3.620374 CCCATGAATCTGAACTGACGAAG 59.380 47.826 0.00 0.00 0.00 3.79
395 396 4.498241 CCATGAATCTGAACTGACGAAGA 58.502 43.478 0.00 0.00 0.00 2.87
396 397 4.931601 CCATGAATCTGAACTGACGAAGAA 59.068 41.667 0.00 0.00 0.00 2.52
397 398 5.063186 CCATGAATCTGAACTGACGAAGAAG 59.937 44.000 0.00 0.00 0.00 2.85
398 399 5.453567 TGAATCTGAACTGACGAAGAAGA 57.546 39.130 0.00 0.00 0.00 2.87
399 400 5.465051 TGAATCTGAACTGACGAAGAAGAG 58.535 41.667 0.00 0.00 0.00 2.85
400 401 5.241728 TGAATCTGAACTGACGAAGAAGAGA 59.758 40.000 0.00 0.00 0.00 3.10
401 402 4.757799 TCTGAACTGACGAAGAAGAGAG 57.242 45.455 0.00 0.00 0.00 3.20
402 403 3.504134 TCTGAACTGACGAAGAAGAGAGG 59.496 47.826 0.00 0.00 0.00 3.69
403 404 2.029828 TGAACTGACGAAGAAGAGAGGC 60.030 50.000 0.00 0.00 0.00 4.70
404 405 0.523966 ACTGACGAAGAAGAGAGGCG 59.476 55.000 0.00 0.00 0.00 5.52
405 406 0.179150 CTGACGAAGAAGAGAGGCGG 60.179 60.000 0.00 0.00 0.00 6.13
406 407 1.139947 GACGAAGAAGAGAGGCGGG 59.860 63.158 0.00 0.00 0.00 6.13
407 408 2.202810 CGAAGAAGAGAGGCGGGC 60.203 66.667 0.00 0.00 0.00 6.13
408 409 2.982130 GAAGAAGAGAGGCGGGCA 59.018 61.111 3.78 0.00 0.00 5.36
409 410 1.296715 GAAGAAGAGAGGCGGGCAA 59.703 57.895 3.78 0.00 0.00 4.52
410 411 0.107459 GAAGAAGAGAGGCGGGCAAT 60.107 55.000 3.78 0.00 0.00 3.56
411 412 1.139058 GAAGAAGAGAGGCGGGCAATA 59.861 52.381 3.78 0.00 0.00 1.90
412 413 1.428869 AGAAGAGAGGCGGGCAATAT 58.571 50.000 3.78 0.00 0.00 1.28
413 414 2.609747 AGAAGAGAGGCGGGCAATATA 58.390 47.619 3.78 0.00 0.00 0.86
414 415 3.177228 AGAAGAGAGGCGGGCAATATAT 58.823 45.455 3.78 0.00 0.00 0.86
415 416 3.584848 AGAAGAGAGGCGGGCAATATATT 59.415 43.478 3.78 0.00 0.00 1.28
416 417 4.042187 AGAAGAGAGGCGGGCAATATATTT 59.958 41.667 3.78 0.00 0.00 1.40
417 418 3.944087 AGAGAGGCGGGCAATATATTTC 58.056 45.455 3.78 0.00 0.00 2.17
418 419 3.327757 AGAGAGGCGGGCAATATATTTCA 59.672 43.478 3.78 0.00 0.00 2.69
419 420 4.072131 GAGAGGCGGGCAATATATTTCAA 58.928 43.478 3.78 0.00 0.00 2.69
420 421 3.821033 AGAGGCGGGCAATATATTTCAAC 59.179 43.478 3.78 0.00 0.00 3.18
421 422 3.561143 AGGCGGGCAATATATTTCAACA 58.439 40.909 3.78 0.00 0.00 3.33
422 423 3.317993 AGGCGGGCAATATATTTCAACAC 59.682 43.478 3.78 0.00 0.00 3.32
423 424 3.296628 GCGGGCAATATATTTCAACACG 58.703 45.455 0.00 0.53 0.00 4.49
424 425 3.242936 GCGGGCAATATATTTCAACACGT 60.243 43.478 0.00 0.00 0.00 4.49
425 426 4.523813 CGGGCAATATATTTCAACACGTC 58.476 43.478 0.00 0.00 0.00 4.34
426 427 4.034626 CGGGCAATATATTTCAACACGTCA 59.965 41.667 0.00 0.00 0.00 4.35
427 428 5.270853 GGGCAATATATTTCAACACGTCAC 58.729 41.667 0.00 0.00 0.00 3.67
428 429 5.163703 GGGCAATATATTTCAACACGTCACA 60.164 40.000 0.00 0.00 0.00 3.58
429 430 6.318628 GGCAATATATTTCAACACGTCACAA 58.681 36.000 0.00 0.00 0.00 3.33
430 431 6.250527 GGCAATATATTTCAACACGTCACAAC 59.749 38.462 0.00 0.00 0.00 3.32
431 432 7.021196 GCAATATATTTCAACACGTCACAACT 58.979 34.615 0.00 0.00 0.00 3.16
432 433 7.007367 GCAATATATTTCAACACGTCACAACTG 59.993 37.037 0.00 0.00 0.00 3.16
433 434 7.899178 ATATATTTCAACACGTCACAACTGA 57.101 32.000 0.00 0.00 0.00 3.41
434 435 3.733024 TTTCAACACGTCACAACTGAC 57.267 42.857 0.00 0.00 43.17 3.51
435 436 2.665649 TCAACACGTCACAACTGACT 57.334 45.000 0.00 0.00 44.27 3.41
436 437 2.536365 TCAACACGTCACAACTGACTC 58.464 47.619 0.00 0.00 44.27 3.36
437 438 1.593006 CAACACGTCACAACTGACTCC 59.407 52.381 0.00 0.00 44.27 3.85
438 439 0.821517 ACACGTCACAACTGACTCCA 59.178 50.000 0.00 0.00 44.27 3.86
439 440 1.206132 ACACGTCACAACTGACTCCAA 59.794 47.619 0.00 0.00 44.27 3.53
440 441 2.276201 CACGTCACAACTGACTCCAAA 58.724 47.619 0.00 0.00 44.27 3.28
441 442 2.285220 CACGTCACAACTGACTCCAAAG 59.715 50.000 0.00 0.00 44.27 2.77
442 443 1.867233 CGTCACAACTGACTCCAAAGG 59.133 52.381 0.00 0.00 44.27 3.11
443 444 2.741878 CGTCACAACTGACTCCAAAGGT 60.742 50.000 0.00 0.00 44.27 3.50
444 445 3.491964 CGTCACAACTGACTCCAAAGGTA 60.492 47.826 0.00 0.00 44.27 3.08
445 446 3.808174 GTCACAACTGACTCCAAAGGTAC 59.192 47.826 0.00 0.00 43.26 3.34
446 447 3.452990 TCACAACTGACTCCAAAGGTACA 59.547 43.478 0.00 0.00 0.00 2.90
447 448 3.560068 CACAACTGACTCCAAAGGTACAC 59.440 47.826 0.00 0.00 0.00 2.90
448 449 3.454812 ACAACTGACTCCAAAGGTACACT 59.545 43.478 0.00 0.00 0.00 3.55
449 450 4.080526 ACAACTGACTCCAAAGGTACACTT 60.081 41.667 0.00 0.00 42.52 3.16
450 451 4.073293 ACTGACTCCAAAGGTACACTTG 57.927 45.455 0.00 0.00 39.96 3.16
451 452 3.454812 ACTGACTCCAAAGGTACACTTGT 59.545 43.478 0.00 0.00 39.96 3.16
452 453 3.804036 TGACTCCAAAGGTACACTTGTG 58.196 45.455 0.00 0.00 39.96 3.33
453 454 2.548480 GACTCCAAAGGTACACTTGTGC 59.452 50.000 0.10 0.00 39.96 4.57
454 455 2.092646 ACTCCAAAGGTACACTTGTGCA 60.093 45.455 0.10 0.00 39.96 4.57
455 456 2.948979 CTCCAAAGGTACACTTGTGCAA 59.051 45.455 0.10 0.00 39.96 4.08
456 457 2.685897 TCCAAAGGTACACTTGTGCAAC 59.314 45.455 0.10 0.07 39.96 4.17
469 470 2.521708 GCAACAAGCACCAGGGGT 60.522 61.111 0.00 0.00 44.79 4.95
496 497 1.526041 GCATCTGCTAGAAGCGACATG 59.474 52.381 0.00 0.00 46.26 3.21
517 518 5.761165 TGATTGAAGTGGCATATGACATG 57.239 39.130 15.89 0.00 34.33 3.21
525 526 0.178981 GCATATGACATGGGGTGCCT 60.179 55.000 6.97 0.00 0.00 4.75
526 527 1.901591 CATATGACATGGGGTGCCTC 58.098 55.000 0.00 0.00 0.00 4.70
558 559 4.141287 CACTATTCCAACAACAGGGACAA 58.859 43.478 0.00 0.00 31.59 3.18
559 560 4.023193 CACTATTCCAACAACAGGGACAAC 60.023 45.833 0.00 0.00 31.59 3.32
562 563 2.808919 TCCAACAACAGGGACAACAAA 58.191 42.857 0.00 0.00 0.00 2.83
563 564 3.165875 TCCAACAACAGGGACAACAAAA 58.834 40.909 0.00 0.00 0.00 2.44
586 587 1.000866 AGCAGGCCATTTCCCCTTC 59.999 57.895 5.01 0.00 0.00 3.46
637 638 5.261040 TGAGAAAATTCAGGGAATCAGGT 57.739 39.130 0.00 0.00 30.29 4.00
670 671 0.325933 CCAGTGCATTCCAGAGGACA 59.674 55.000 0.00 0.00 0.00 4.02
686 687 0.179097 GACACCGATCTTCAGAGGGC 60.179 60.000 0.00 0.00 0.00 5.19
687 688 0.904865 ACACCGATCTTCAGAGGGCA 60.905 55.000 0.00 0.00 0.00 5.36
688 689 0.179089 CACCGATCTTCAGAGGGCAG 60.179 60.000 0.00 0.00 0.00 4.85
698 700 4.532126 TCTTCAGAGGGCAGACATTCTAAA 59.468 41.667 0.00 0.00 0.00 1.85
746 748 3.509575 CCGAGAGAGATCCTATTCTTGGG 59.490 52.174 9.99 2.88 37.51 4.12
771 773 2.863704 GCACATTGACCTCCACAAAAGC 60.864 50.000 0.00 0.00 0.00 3.51
868 870 1.293924 GCAATCTGTGACCAGGATCG 58.706 55.000 0.00 0.00 39.31 3.69
900 902 1.522569 GAGAACTCCCCGTCCATGG 59.477 63.158 4.97 4.97 0.00 3.66
937 939 5.702670 TGCAAAGAGTCTTCTGGATTGTAAG 59.297 40.000 5.70 0.00 32.79 2.34
1142 1144 4.554036 GCGATCTGGAGCACCCCC 62.554 72.222 0.00 0.00 34.81 5.40
1197 1199 5.116377 CGTTTTGTACCATTTGTCAAATCCG 59.884 40.000 7.87 4.41 31.45 4.18
1238 1240 5.126061 GTCCCTGTAATGCATGTTGAATTCT 59.874 40.000 0.00 0.00 26.69 2.40
1239 1241 5.357878 TCCCTGTAATGCATGTTGAATTCTC 59.642 40.000 0.00 0.90 26.69 2.87
1275 1277 6.515531 GCATGATGGGTCACAATGGTATTTAG 60.516 42.308 0.00 0.00 37.14 1.85
1319 1321 4.024556 CAGCAGACTGTTTGAATTTCGTCT 60.025 41.667 3.99 0.00 39.22 4.18
1336 1338 4.547532 TCGTCTGAGAGCAAAACTAAGAC 58.452 43.478 0.00 0.00 40.55 3.01
1428 1430 1.971481 TGGGCAATCATCATCCGAAG 58.029 50.000 0.00 0.00 0.00 3.79
1615 1617 9.053472 CCAGGTATATATAGGAACAACCCAATA 57.947 37.037 0.00 0.00 40.05 1.90
1728 1731 5.179555 GTCAAACAACTAGACCTGAATGGAC 59.820 44.000 0.00 0.00 39.71 4.02
1911 1914 6.410243 AGCGCTAGTCTTTTCTTCATTAAC 57.590 37.500 8.99 0.00 0.00 2.01
2041 2052 5.878332 ACATCTATGCGTCATTTTCAACA 57.122 34.783 0.00 0.00 0.00 3.33
2061 2072 9.868277 TTCAACATAAAAATCATGTGAATACCC 57.132 29.630 0.00 0.00 36.74 3.69
2062 2073 9.029368 TCAACATAAAAATCATGTGAATACCCA 57.971 29.630 0.00 0.00 36.74 4.51
2189 2209 3.493129 TGAACTGTTGTTGTCGCAGATAC 59.507 43.478 0.00 0.00 35.93 2.24
2397 2417 1.524008 GGCCTGTTGGGGAAAAGACG 61.524 60.000 0.00 0.00 35.12 4.18
2544 2564 3.795561 AGAAAAGCTGTCGATTCAACG 57.204 42.857 0.00 0.00 0.00 4.10
2556 2576 2.319472 GATTCAACGAAACCAGCAAGC 58.681 47.619 0.00 0.00 0.00 4.01
2584 2604 2.980568 TCTTGGTTAACTGGGTATGCG 58.019 47.619 5.42 0.00 0.00 4.73
2585 2605 2.303600 TCTTGGTTAACTGGGTATGCGT 59.696 45.455 5.42 0.00 0.00 5.24
2589 2609 2.934553 GGTTAACTGGGTATGCGTCTTC 59.065 50.000 5.42 0.00 0.00 2.87
2595 2615 1.621317 TGGGTATGCGTCTTCTGTTCA 59.379 47.619 0.00 0.00 0.00 3.18
2596 2616 2.236146 TGGGTATGCGTCTTCTGTTCAT 59.764 45.455 0.00 0.00 0.00 2.57
2597 2617 3.449377 TGGGTATGCGTCTTCTGTTCATA 59.551 43.478 0.00 0.00 0.00 2.15
2657 2711 7.879160 AGGAATTATTTCAAAAAGATGCTTGCA 59.121 29.630 0.00 0.00 33.23 4.08
2696 2750 7.020010 CAGACAGTTGAGCTAAATTCATGTTC 58.980 38.462 0.00 0.00 0.00 3.18
2858 2912 0.469494 TGCGGCCATACATGAGTGAT 59.531 50.000 2.24 0.00 0.00 3.06
2882 2936 2.562298 TGTTGTTGCATTGGGATTCCTC 59.438 45.455 2.01 0.00 0.00 3.71
2919 2973 3.244215 TGGCTGTGAAGAGAAACCTAGTG 60.244 47.826 0.00 0.00 0.00 2.74
2925 2979 1.245732 AGAGAAACCTAGTGTCGCGT 58.754 50.000 5.77 0.00 0.00 6.01
3100 3154 4.234550 TCCCAGTGCATTACAGATCCTAT 58.765 43.478 0.00 0.00 0.00 2.57
3133 3187 3.323691 AGGGTGTAAAAAGCCCATGAAAC 59.676 43.478 0.00 0.00 44.69 2.78
3187 3241 3.988819 TGTAGCTTTCCAAATTTGTGCC 58.011 40.909 16.73 5.21 0.00 5.01
3188 3242 3.640967 TGTAGCTTTCCAAATTTGTGCCT 59.359 39.130 16.73 8.00 0.00 4.75
3189 3243 3.391506 AGCTTTCCAAATTTGTGCCTC 57.608 42.857 16.73 3.64 0.00 4.70
3190 3244 2.037641 AGCTTTCCAAATTTGTGCCTCC 59.962 45.455 16.73 1.46 0.00 4.30
3191 3245 2.224257 GCTTTCCAAATTTGTGCCTCCA 60.224 45.455 16.73 0.00 0.00 3.86
3192 3246 3.557686 GCTTTCCAAATTTGTGCCTCCAT 60.558 43.478 16.73 0.00 0.00 3.41
3193 3247 4.322650 GCTTTCCAAATTTGTGCCTCCATA 60.323 41.667 16.73 0.00 0.00 2.74
3194 3248 5.404466 TTTCCAAATTTGTGCCTCCATAG 57.596 39.130 16.73 0.00 0.00 2.23
3195 3249 3.364549 TCCAAATTTGTGCCTCCATAGG 58.635 45.455 16.73 0.00 46.76 2.57
3541 3606 5.510520 CCTCCTCCAGTTAGAATATGCACTC 60.511 48.000 0.00 0.00 0.00 3.51
3696 3762 6.942576 GGTACTCATTTATGTATCCATTGCCT 59.057 38.462 0.00 0.00 32.29 4.75
3735 3801 3.976015 CTGCCATAGGGGAAGGTTTAAA 58.024 45.455 0.00 0.00 38.90 1.52
3743 3809 7.986889 CCATAGGGGAAGGTTTAAAATCAATTG 59.013 37.037 0.00 0.00 40.01 2.32
3762 3828 3.662759 TGGTGGACCAGAAAAGAACTT 57.337 42.857 0.00 0.00 42.01 2.66
3763 3829 3.287222 TGGTGGACCAGAAAAGAACTTG 58.713 45.455 0.00 0.00 42.01 3.16
3764 3830 3.053991 TGGTGGACCAGAAAAGAACTTGA 60.054 43.478 0.00 0.00 42.01 3.02
3765 3831 3.315470 GGTGGACCAGAAAAGAACTTGAC 59.685 47.826 0.00 0.00 35.64 3.18
3766 3832 3.945285 GTGGACCAGAAAAGAACTTGACA 59.055 43.478 0.00 0.00 0.00 3.58
3767 3833 4.398044 GTGGACCAGAAAAGAACTTGACAA 59.602 41.667 0.00 0.00 0.00 3.18
3768 3834 5.067805 GTGGACCAGAAAAGAACTTGACAAT 59.932 40.000 0.00 0.00 0.00 2.71
3778 3844 6.699575 AAGAACTTGACAATACTGCAACTT 57.300 33.333 0.00 0.00 0.00 2.66
3787 3853 7.608153 TGACAATACTGCAACTTACTAAGCTA 58.392 34.615 0.00 0.00 0.00 3.32
3795 3861 6.966021 TGCAACTTACTAAGCTAAAAACAGG 58.034 36.000 0.00 0.00 0.00 4.00
3804 3870 8.459911 ACTAAGCTAAAAACAGGTACAAATGT 57.540 30.769 0.00 0.00 0.00 2.71
3805 3871 8.349983 ACTAAGCTAAAAACAGGTACAAATGTG 58.650 33.333 0.00 0.00 0.00 3.21
3811 3878 7.826260 AAAAACAGGTACAAATGTGAAGTTG 57.174 32.000 0.00 0.00 0.00 3.16
3818 3885 6.710744 AGGTACAAATGTGAAGTTGGTAAGAG 59.289 38.462 0.00 0.00 0.00 2.85
3832 3899 3.075148 GGTAAGAGCTTTGTCCAAGGAC 58.925 50.000 12.30 12.30 44.77 3.85
3850 3917 6.148480 CCAAGGACAACAAAGTAAGAGATCTG 59.852 42.308 0.00 0.00 0.00 2.90
3857 3924 5.983540 ACAAAGTAAGAGATCTGGGATGAC 58.016 41.667 0.00 0.00 0.00 3.06
3867 3934 1.277273 TCTGGGATGACAGAAGTGCAG 59.723 52.381 0.00 0.00 44.03 4.41
3877 3944 5.125356 TGACAGAAGTGCAGAATTTGAGAA 58.875 37.500 0.00 0.00 0.00 2.87
3878 3945 5.589855 TGACAGAAGTGCAGAATTTGAGAAA 59.410 36.000 0.00 0.00 0.00 2.52
3881 3948 6.489361 ACAGAAGTGCAGAATTTGAGAAATCT 59.511 34.615 0.00 0.00 0.00 2.40
3950 4017 5.065218 AGAGCAACATTCCACGATATTTGAC 59.935 40.000 0.00 0.00 0.00 3.18
3973 4040 7.039853 TGACTGCATTCCAAAGAAATCATGTAA 60.040 33.333 1.11 0.00 35.09 2.41
3974 4041 7.669427 ACTGCATTCCAAAGAAATCATGTAAA 58.331 30.769 0.00 0.00 35.09 2.01
3989 4056 6.580963 TCATGTAAAAACAACACATGCAAC 57.419 33.333 8.66 0.00 45.86 4.17
3990 4057 6.101997 TCATGTAAAAACAACACATGCAACA 58.898 32.000 8.66 0.00 45.86 3.33
3999 4066 7.840342 AACAACACATGCAACAAAAATTCTA 57.160 28.000 0.00 0.00 0.00 2.10
4015 4082 9.007901 CAAAAATTCTAATGAACTGAGGAGAGT 57.992 33.333 0.00 0.00 34.71 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.239968 GGCTTGCTCTCTTGGGTGTG 61.240 60.000 0.00 0.00 0.00 3.82
1 2 1.073897 GGCTTGCTCTCTTGGGTGT 59.926 57.895 0.00 0.00 0.00 4.16
2 3 1.676967 GGGCTTGCTCTCTTGGGTG 60.677 63.158 0.00 0.00 0.00 4.61
3 4 1.849823 AGGGCTTGCTCTCTTGGGT 60.850 57.895 0.00 0.00 0.00 4.51
4 5 1.378250 CAGGGCTTGCTCTCTTGGG 60.378 63.158 0.00 0.00 0.00 4.12
5 6 4.315588 CAGGGCTTGCTCTCTTGG 57.684 61.111 0.00 0.00 0.00 3.61
14 15 0.679321 GAGAGAAAGGGCAGGGCTTG 60.679 60.000 0.00 0.00 0.00 4.01
15 16 0.844221 AGAGAGAAAGGGCAGGGCTT 60.844 55.000 0.00 0.00 0.00 4.35
16 17 0.844221 AAGAGAGAAAGGGCAGGGCT 60.844 55.000 0.00 0.00 0.00 5.19
17 18 0.038890 AAAGAGAGAAAGGGCAGGGC 59.961 55.000 0.00 0.00 0.00 5.19
18 19 1.632920 AGAAAGAGAGAAAGGGCAGGG 59.367 52.381 0.00 0.00 0.00 4.45
19 20 3.517500 AGTAGAAAGAGAGAAAGGGCAGG 59.482 47.826 0.00 0.00 0.00 4.85
20 21 4.382577 GGAGTAGAAAGAGAGAAAGGGCAG 60.383 50.000 0.00 0.00 0.00 4.85
21 22 3.515901 GGAGTAGAAAGAGAGAAAGGGCA 59.484 47.826 0.00 0.00 0.00 5.36
22 23 3.429684 CGGAGTAGAAAGAGAGAAAGGGC 60.430 52.174 0.00 0.00 0.00 5.19
23 24 3.429684 GCGGAGTAGAAAGAGAGAAAGGG 60.430 52.174 0.00 0.00 0.00 3.95
24 25 3.429684 GGCGGAGTAGAAAGAGAGAAAGG 60.430 52.174 0.00 0.00 0.00 3.11
25 26 3.429684 GGGCGGAGTAGAAAGAGAGAAAG 60.430 52.174 0.00 0.00 0.00 2.62
26 27 2.496470 GGGCGGAGTAGAAAGAGAGAAA 59.504 50.000 0.00 0.00 0.00 2.52
27 28 2.100989 GGGCGGAGTAGAAAGAGAGAA 58.899 52.381 0.00 0.00 0.00 2.87
28 29 1.685491 GGGGCGGAGTAGAAAGAGAGA 60.685 57.143 0.00 0.00 0.00 3.10
29 30 0.747852 GGGGCGGAGTAGAAAGAGAG 59.252 60.000 0.00 0.00 0.00 3.20
30 31 0.686769 GGGGGCGGAGTAGAAAGAGA 60.687 60.000 0.00 0.00 0.00 3.10
31 32 0.688087 AGGGGGCGGAGTAGAAAGAG 60.688 60.000 0.00 0.00 0.00 2.85
32 33 0.686769 GAGGGGGCGGAGTAGAAAGA 60.687 60.000 0.00 0.00 0.00 2.52
33 34 0.688087 AGAGGGGGCGGAGTAGAAAG 60.688 60.000 0.00 0.00 0.00 2.62
34 35 0.686769 GAGAGGGGGCGGAGTAGAAA 60.687 60.000 0.00 0.00 0.00 2.52
35 36 1.076192 GAGAGGGGGCGGAGTAGAA 60.076 63.158 0.00 0.00 0.00 2.10
36 37 1.997256 GAGAGAGGGGGCGGAGTAGA 61.997 65.000 0.00 0.00 0.00 2.59
37 38 1.529713 GAGAGAGGGGGCGGAGTAG 60.530 68.421 0.00 0.00 0.00 2.57
38 39 2.007568 AGAGAGAGGGGGCGGAGTA 61.008 63.158 0.00 0.00 0.00 2.59
39 40 3.351885 AGAGAGAGGGGGCGGAGT 61.352 66.667 0.00 0.00 0.00 3.85
40 41 2.837291 CAGAGAGAGGGGGCGGAG 60.837 72.222 0.00 0.00 0.00 4.63
43 44 3.535962 GAGCAGAGAGAGGGGGCG 61.536 72.222 0.00 0.00 0.00 6.13
44 45 2.042025 AGAGCAGAGAGAGGGGGC 60.042 66.667 0.00 0.00 0.00 5.80
45 46 0.756442 CTGAGAGCAGAGAGAGGGGG 60.756 65.000 0.00 0.00 45.17 5.40
46 47 0.258484 TCTGAGAGCAGAGAGAGGGG 59.742 60.000 0.00 0.00 45.88 4.79
47 48 3.901087 TCTGAGAGCAGAGAGAGGG 57.099 57.895 0.00 0.00 45.88 4.30
55 56 0.248990 GAGTCGCCATCTGAGAGCAG 60.249 60.000 3.09 0.00 43.67 4.24
56 57 1.670949 GGAGTCGCCATCTGAGAGCA 61.671 60.000 3.09 0.00 36.34 4.26
57 58 1.067250 GGAGTCGCCATCTGAGAGC 59.933 63.158 0.00 0.00 36.34 4.09
58 59 2.498077 TGGAGTCGCCATCTGAGAG 58.502 57.895 0.00 0.00 43.33 3.20
59 60 4.764143 TGGAGTCGCCATCTGAGA 57.236 55.556 0.00 0.00 43.33 3.27
66 67 1.290955 CCTTTACGTGGAGTCGCCA 59.709 57.895 0.00 0.00 46.96 5.69
67 68 1.447314 CCCTTTACGTGGAGTCGCC 60.447 63.158 0.00 0.00 37.10 5.54
68 69 1.012486 CACCCTTTACGTGGAGTCGC 61.012 60.000 0.00 0.00 0.00 5.19
69 70 3.117589 CACCCTTTACGTGGAGTCG 57.882 57.895 0.00 0.00 0.00 4.18
75 76 2.031465 ACCGCCACCCTTTACGTG 59.969 61.111 0.00 0.00 0.00 4.49
76 77 2.031465 CACCGCCACCCTTTACGT 59.969 61.111 0.00 0.00 0.00 3.57
77 78 1.740296 CTCACCGCCACCCTTTACG 60.740 63.158 0.00 0.00 0.00 3.18
78 79 2.038837 GCTCACCGCCACCCTTTAC 61.039 63.158 0.00 0.00 0.00 2.01
79 80 2.349755 GCTCACCGCCACCCTTTA 59.650 61.111 0.00 0.00 0.00 1.85
88 89 2.639286 CAGTTGTTGGCTCACCGC 59.361 61.111 0.00 0.00 39.70 5.68
89 90 2.639286 GCAGTTGTTGGCTCACCG 59.361 61.111 0.00 0.00 39.70 4.94
90 91 2.639286 CGCAGTTGTTGGCTCACC 59.361 61.111 0.00 0.00 0.00 4.02
91 92 1.845809 CTCCGCAGTTGTTGGCTCAC 61.846 60.000 0.00 0.00 0.00 3.51
92 93 1.597854 CTCCGCAGTTGTTGGCTCA 60.598 57.895 0.00 0.00 0.00 4.26
93 94 2.970974 GCTCCGCAGTTGTTGGCTC 61.971 63.158 0.00 0.00 0.00 4.70
94 95 2.980233 GCTCCGCAGTTGTTGGCT 60.980 61.111 0.00 0.00 0.00 4.75
95 96 3.286751 TGCTCCGCAGTTGTTGGC 61.287 61.111 0.00 0.00 33.32 4.52
115 116 2.420466 CTTTGTTTGGGCGTGGAGGC 62.420 60.000 0.00 0.00 45.91 4.70
116 117 0.821711 TCTTTGTTTGGGCGTGGAGG 60.822 55.000 0.00 0.00 0.00 4.30
117 118 0.310854 GTCTTTGTTTGGGCGTGGAG 59.689 55.000 0.00 0.00 0.00 3.86
118 119 1.104577 GGTCTTTGTTTGGGCGTGGA 61.105 55.000 0.00 0.00 0.00 4.02
119 120 1.362355 GGTCTTTGTTTGGGCGTGG 59.638 57.895 0.00 0.00 0.00 4.94
120 121 0.457851 TTGGTCTTTGTTTGGGCGTG 59.542 50.000 0.00 0.00 0.00 5.34
121 122 0.744281 CTTGGTCTTTGTTTGGGCGT 59.256 50.000 0.00 0.00 0.00 5.68
122 123 0.031994 CCTTGGTCTTTGTTTGGGCG 59.968 55.000 0.00 0.00 0.00 6.13
123 124 1.068588 GACCTTGGTCTTTGTTTGGGC 59.931 52.381 12.20 0.00 0.00 5.36
124 125 1.336755 CGACCTTGGTCTTTGTTTGGG 59.663 52.381 16.60 0.00 0.00 4.12
125 126 1.269051 GCGACCTTGGTCTTTGTTTGG 60.269 52.381 16.60 1.34 0.00 3.28
126 127 1.269051 GGCGACCTTGGTCTTTGTTTG 60.269 52.381 16.60 1.99 0.00 2.93
127 128 1.029681 GGCGACCTTGGTCTTTGTTT 58.970 50.000 16.60 0.00 0.00 2.83
128 129 2.715536 GGCGACCTTGGTCTTTGTT 58.284 52.632 16.60 0.00 0.00 2.83
129 130 4.475527 GGCGACCTTGGTCTTTGT 57.524 55.556 16.60 0.00 0.00 2.83
141 142 3.434319 CATGTGGTGCAGGGCGAC 61.434 66.667 0.00 0.00 0.00 5.19
142 143 3.899981 GACATGTGGTGCAGGGCGA 62.900 63.158 1.15 0.00 32.37 5.54
143 144 3.434319 GACATGTGGTGCAGGGCG 61.434 66.667 1.15 0.00 32.37 6.13
144 145 2.282391 TGACATGTGGTGCAGGGC 60.282 61.111 1.15 0.00 37.43 5.19
145 146 2.327343 CGTGACATGTGGTGCAGGG 61.327 63.158 1.15 0.00 32.37 4.45
146 147 1.568612 GACGTGACATGTGGTGCAGG 61.569 60.000 1.15 3.07 34.63 4.85
147 148 0.879839 TGACGTGACATGTGGTGCAG 60.880 55.000 1.15 0.00 0.00 4.41
148 149 1.144936 TGACGTGACATGTGGTGCA 59.855 52.632 1.15 0.00 0.00 4.57
149 150 0.880278 AGTGACGTGACATGTGGTGC 60.880 55.000 8.15 0.00 0.00 5.01
150 151 1.139989 GAGTGACGTGACATGTGGTG 58.860 55.000 8.15 0.00 0.00 4.17
151 152 0.318699 CGAGTGACGTGACATGTGGT 60.319 55.000 8.15 0.00 37.22 4.16
152 153 1.617755 GCGAGTGACGTGACATGTGG 61.618 60.000 8.15 0.00 44.60 4.17
153 154 1.617755 GGCGAGTGACGTGACATGTG 61.618 60.000 8.15 0.00 44.60 3.21
154 155 1.372997 GGCGAGTGACGTGACATGT 60.373 57.895 8.15 0.00 44.60 3.21
155 156 2.436539 CGGCGAGTGACGTGACATG 61.437 63.158 8.15 0.00 43.37 3.21
156 157 2.126463 CGGCGAGTGACGTGACAT 60.126 61.111 8.15 0.00 43.37 3.06
165 166 4.803426 GAGGTCAGCCGGCGAGTG 62.803 72.222 23.20 14.89 40.50 3.51
166 167 2.912987 ATAGAGGTCAGCCGGCGAGT 62.913 60.000 23.20 11.39 40.50 4.18
167 168 0.889638 TATAGAGGTCAGCCGGCGAG 60.890 60.000 23.20 18.47 40.50 5.03
168 169 0.889638 CTATAGAGGTCAGCCGGCGA 60.890 60.000 23.20 18.73 40.50 5.54
169 170 0.889638 TCTATAGAGGTCAGCCGGCG 60.890 60.000 23.20 16.49 40.50 6.46
170 171 1.271102 CTTCTATAGAGGTCAGCCGGC 59.729 57.143 21.89 21.89 40.50 6.13
171 172 1.271102 GCTTCTATAGAGGTCAGCCGG 59.729 57.143 12.94 0.00 40.50 6.13
172 173 1.068885 CGCTTCTATAGAGGTCAGCCG 60.069 57.143 15.37 6.53 40.50 5.52
173 174 1.336424 GCGCTTCTATAGAGGTCAGCC 60.336 57.143 15.37 7.39 0.00 4.85
174 175 1.611491 AGCGCTTCTATAGAGGTCAGC 59.389 52.381 2.64 12.62 27.33 4.26
175 176 2.606795 GCAGCGCTTCTATAGAGGTCAG 60.607 54.545 7.50 4.51 31.71 3.51
176 177 1.338337 GCAGCGCTTCTATAGAGGTCA 59.662 52.381 7.50 0.00 31.71 4.02
177 178 1.336424 GGCAGCGCTTCTATAGAGGTC 60.336 57.143 7.50 6.07 31.71 3.85
178 179 0.676736 GGCAGCGCTTCTATAGAGGT 59.323 55.000 7.50 0.50 34.56 3.85
179 180 0.037790 GGGCAGCGCTTCTATAGAGG 60.038 60.000 7.50 7.49 0.00 3.69
180 181 0.965439 AGGGCAGCGCTTCTATAGAG 59.035 55.000 7.50 0.00 0.00 2.43
181 182 0.676184 CAGGGCAGCGCTTCTATAGA 59.324 55.000 7.50 0.00 0.00 1.98
182 183 0.948141 GCAGGGCAGCGCTTCTATAG 60.948 60.000 7.50 0.00 0.00 1.31
183 184 1.069765 GCAGGGCAGCGCTTCTATA 59.930 57.895 7.50 0.00 0.00 1.31
184 185 2.203126 GCAGGGCAGCGCTTCTAT 60.203 61.111 7.50 0.00 0.00 1.98
185 186 2.959484 AAGCAGGGCAGCGCTTCTA 61.959 57.895 7.50 0.00 45.10 2.10
186 187 4.341783 AAGCAGGGCAGCGCTTCT 62.342 61.111 7.50 7.63 45.10 2.85
191 192 2.979676 TTGTGAAGCAGGGCAGCG 60.980 61.111 0.00 0.00 40.15 5.18
192 193 1.860484 GAGTTGTGAAGCAGGGCAGC 61.860 60.000 0.00 0.00 0.00 5.25
193 194 1.572085 CGAGTTGTGAAGCAGGGCAG 61.572 60.000 0.00 0.00 0.00 4.85
194 195 1.597854 CGAGTTGTGAAGCAGGGCA 60.598 57.895 0.00 0.00 0.00 5.36
195 196 2.970974 GCGAGTTGTGAAGCAGGGC 61.971 63.158 0.00 0.00 0.00 5.19
196 197 2.328099 GGCGAGTTGTGAAGCAGGG 61.328 63.158 0.00 0.00 0.00 4.45
197 198 1.294659 GAGGCGAGTTGTGAAGCAGG 61.295 60.000 0.00 0.00 0.00 4.85
198 199 0.320247 AGAGGCGAGTTGTGAAGCAG 60.320 55.000 0.00 0.00 0.00 4.24
199 200 0.319900 GAGAGGCGAGTTGTGAAGCA 60.320 55.000 0.00 0.00 0.00 3.91
200 201 0.319900 TGAGAGGCGAGTTGTGAAGC 60.320 55.000 0.00 0.00 0.00 3.86
201 202 2.376808 ATGAGAGGCGAGTTGTGAAG 57.623 50.000 0.00 0.00 0.00 3.02
202 203 2.839486 AATGAGAGGCGAGTTGTGAA 57.161 45.000 0.00 0.00 0.00 3.18
203 204 2.839486 AAATGAGAGGCGAGTTGTGA 57.161 45.000 0.00 0.00 0.00 3.58
204 205 2.349886 GCTAAATGAGAGGCGAGTTGTG 59.650 50.000 0.00 0.00 0.00 3.33
205 206 2.622436 GCTAAATGAGAGGCGAGTTGT 58.378 47.619 0.00 0.00 0.00 3.32
206 207 1.936547 GGCTAAATGAGAGGCGAGTTG 59.063 52.381 0.00 0.00 0.00 3.16
207 208 2.317530 GGCTAAATGAGAGGCGAGTT 57.682 50.000 0.00 0.00 0.00 3.01
212 213 2.829741 ATCTCGGCTAAATGAGAGGC 57.170 50.000 0.00 0.00 43.91 4.70
213 214 4.322349 CCCTTATCTCGGCTAAATGAGAGG 60.322 50.000 0.00 0.00 43.91 3.69
214 215 4.524714 TCCCTTATCTCGGCTAAATGAGAG 59.475 45.833 0.00 0.00 43.91 3.20
215 216 4.480115 TCCCTTATCTCGGCTAAATGAGA 58.520 43.478 0.00 0.00 44.71 3.27
216 217 4.815269 CTCCCTTATCTCGGCTAAATGAG 58.185 47.826 0.00 0.00 0.00 2.90
217 218 3.006967 GCTCCCTTATCTCGGCTAAATGA 59.993 47.826 0.00 0.00 0.00 2.57
218 219 3.244215 TGCTCCCTTATCTCGGCTAAATG 60.244 47.826 0.00 0.00 0.00 2.32
219 220 2.972713 TGCTCCCTTATCTCGGCTAAAT 59.027 45.455 0.00 0.00 0.00 1.40
220 221 2.394632 TGCTCCCTTATCTCGGCTAAA 58.605 47.619 0.00 0.00 0.00 1.85
221 222 2.082140 TGCTCCCTTATCTCGGCTAA 57.918 50.000 0.00 0.00 0.00 3.09
222 223 1.687123 GTTGCTCCCTTATCTCGGCTA 59.313 52.381 0.00 0.00 0.00 3.93
223 224 0.466124 GTTGCTCCCTTATCTCGGCT 59.534 55.000 0.00 0.00 0.00 5.52
224 225 0.876342 CGTTGCTCCCTTATCTCGGC 60.876 60.000 0.00 0.00 0.00 5.54
225 226 0.249489 CCGTTGCTCCCTTATCTCGG 60.249 60.000 0.00 0.00 0.00 4.63
226 227 0.744874 TCCGTTGCTCCCTTATCTCG 59.255 55.000 0.00 0.00 0.00 4.04
227 228 1.069358 CCTCCGTTGCTCCCTTATCTC 59.931 57.143 0.00 0.00 0.00 2.75
228 229 1.123928 CCTCCGTTGCTCCCTTATCT 58.876 55.000 0.00 0.00 0.00 1.98
229 230 0.106894 CCCTCCGTTGCTCCCTTATC 59.893 60.000 0.00 0.00 0.00 1.75
230 231 1.345715 CCCCTCCGTTGCTCCCTTAT 61.346 60.000 0.00 0.00 0.00 1.73
231 232 1.993391 CCCCTCCGTTGCTCCCTTA 60.993 63.158 0.00 0.00 0.00 2.69
232 233 3.330720 CCCCTCCGTTGCTCCCTT 61.331 66.667 0.00 0.00 0.00 3.95
239 240 3.361977 CAAACCGCCCCTCCGTTG 61.362 66.667 0.00 0.00 0.00 4.10
240 241 3.881104 ACAAACCGCCCCTCCGTT 61.881 61.111 0.00 0.00 0.00 4.44
241 242 4.636435 CACAAACCGCCCCTCCGT 62.636 66.667 0.00 0.00 0.00 4.69
257 258 4.263572 CGTGTCTTGTGGGGCCCA 62.264 66.667 24.76 24.76 0.00 5.36
258 259 3.785122 AACGTGTCTTGTGGGGCCC 62.785 63.158 18.17 18.17 0.00 5.80
259 260 2.203294 AACGTGTCTTGTGGGGCC 60.203 61.111 0.00 0.00 0.00 5.80
260 261 1.822186 ACAACGTGTCTTGTGGGGC 60.822 57.895 0.00 0.00 32.95 5.80
261 262 2.021722 CACAACGTGTCTTGTGGGG 58.978 57.895 9.73 0.00 44.97 4.96
265 266 1.533756 GCAATGCACAACGTGTCTTGT 60.534 47.619 0.00 0.00 35.75 3.16
266 267 1.122849 GCAATGCACAACGTGTCTTG 58.877 50.000 0.00 2.11 35.75 3.02
267 268 0.316937 CGCAATGCACAACGTGTCTT 60.317 50.000 5.91 0.00 35.75 3.01
268 269 1.157257 TCGCAATGCACAACGTGTCT 61.157 50.000 5.91 0.00 35.75 3.41
269 270 0.722469 CTCGCAATGCACAACGTGTC 60.722 55.000 5.91 0.00 35.75 3.67
270 271 1.279539 CTCGCAATGCACAACGTGT 59.720 52.632 5.91 0.00 35.75 4.49
271 272 0.993251 CACTCGCAATGCACAACGTG 60.993 55.000 5.91 0.74 36.51 4.49
272 273 1.157257 TCACTCGCAATGCACAACGT 61.157 50.000 5.91 0.00 0.00 3.99
273 274 0.722469 GTCACTCGCAATGCACAACG 60.722 55.000 5.91 0.00 0.00 4.10
274 275 0.385974 GGTCACTCGCAATGCACAAC 60.386 55.000 5.91 0.00 0.00 3.32
275 276 0.817229 TGGTCACTCGCAATGCACAA 60.817 50.000 5.91 0.00 0.00 3.33
276 277 1.227793 TGGTCACTCGCAATGCACA 60.228 52.632 5.91 0.00 0.00 4.57
277 278 1.499056 CTGGTCACTCGCAATGCAC 59.501 57.895 5.91 0.00 0.00 4.57
278 279 2.327343 GCTGGTCACTCGCAATGCA 61.327 57.895 5.91 0.00 0.00 3.96
279 280 2.327343 TGCTGGTCACTCGCAATGC 61.327 57.895 0.00 0.00 0.00 3.56
280 281 1.229975 TGTGCTGGTCACTCGCAATG 61.230 55.000 0.00 0.00 45.81 2.82
281 282 0.534877 TTGTGCTGGTCACTCGCAAT 60.535 50.000 0.00 0.00 45.81 3.56
282 283 0.534877 ATTGTGCTGGTCACTCGCAA 60.535 50.000 0.00 0.00 45.81 4.85
283 284 0.534877 AATTGTGCTGGTCACTCGCA 60.535 50.000 0.00 0.00 45.81 5.10
284 285 0.166814 GAATTGTGCTGGTCACTCGC 59.833 55.000 0.00 0.00 45.81 5.03
285 286 1.511850 TGAATTGTGCTGGTCACTCG 58.488 50.000 0.00 0.00 45.81 4.18
286 287 4.479619 GAATTGAATTGTGCTGGTCACTC 58.520 43.478 0.00 0.00 45.81 3.51
287 288 3.256631 GGAATTGAATTGTGCTGGTCACT 59.743 43.478 0.00 0.00 45.81 3.41
288 289 3.256631 AGGAATTGAATTGTGCTGGTCAC 59.743 43.478 0.00 0.00 45.82 3.67
289 290 3.499338 AGGAATTGAATTGTGCTGGTCA 58.501 40.909 0.00 0.00 0.00 4.02
290 291 4.702131 ACTAGGAATTGAATTGTGCTGGTC 59.298 41.667 0.00 0.00 0.00 4.02
291 292 4.666512 ACTAGGAATTGAATTGTGCTGGT 58.333 39.130 0.00 0.00 0.00 4.00
292 293 4.201851 CGACTAGGAATTGAATTGTGCTGG 60.202 45.833 0.00 0.00 0.00 4.85
293 294 4.201851 CCGACTAGGAATTGAATTGTGCTG 60.202 45.833 0.00 0.00 45.00 4.41
294 295 3.941483 CCGACTAGGAATTGAATTGTGCT 59.059 43.478 0.00 0.00 45.00 4.40
295 296 3.689649 ACCGACTAGGAATTGAATTGTGC 59.310 43.478 0.00 0.00 45.00 4.57
296 297 4.032900 CGACCGACTAGGAATTGAATTGTG 59.967 45.833 0.00 0.00 45.00 3.33
297 298 4.181578 CGACCGACTAGGAATTGAATTGT 58.818 43.478 0.00 0.00 45.00 2.71
298 299 3.001330 GCGACCGACTAGGAATTGAATTG 59.999 47.826 0.00 0.00 45.00 2.32
299 300 3.195661 GCGACCGACTAGGAATTGAATT 58.804 45.455 0.00 0.00 45.00 2.17
300 301 2.483188 GGCGACCGACTAGGAATTGAAT 60.483 50.000 0.00 0.00 45.00 2.57
301 302 1.134907 GGCGACCGACTAGGAATTGAA 60.135 52.381 0.00 0.00 45.00 2.69
302 303 0.458669 GGCGACCGACTAGGAATTGA 59.541 55.000 0.00 0.00 45.00 2.57
303 304 0.460311 AGGCGACCGACTAGGAATTG 59.540 55.000 0.00 0.00 45.00 2.32
304 305 0.745468 GAGGCGACCGACTAGGAATT 59.255 55.000 0.00 0.00 45.00 2.17
305 306 0.395311 TGAGGCGACCGACTAGGAAT 60.395 55.000 0.00 0.00 45.00 3.01
306 307 1.001764 TGAGGCGACCGACTAGGAA 60.002 57.895 0.00 0.00 45.00 3.36
307 308 1.748122 GTGAGGCGACCGACTAGGA 60.748 63.158 0.00 0.00 45.00 2.94
309 310 1.429825 CTGTGAGGCGACCGACTAG 59.570 63.158 0.00 0.00 30.74 2.57
310 311 2.044555 CCTGTGAGGCGACCGACTA 61.045 63.158 0.00 0.00 30.74 2.59
311 312 3.374402 CCTGTGAGGCGACCGACT 61.374 66.667 0.00 0.00 35.26 4.18
312 313 2.227089 ATTCCTGTGAGGCGACCGAC 62.227 60.000 0.00 0.00 34.61 4.79
313 314 1.945354 GATTCCTGTGAGGCGACCGA 61.945 60.000 0.00 0.00 34.61 4.69
314 315 1.519455 GATTCCTGTGAGGCGACCG 60.519 63.158 0.00 0.00 34.61 4.79
315 316 1.519455 CGATTCCTGTGAGGCGACC 60.519 63.158 0.00 0.00 34.61 4.79
316 317 0.389948 AACGATTCCTGTGAGGCGAC 60.390 55.000 0.00 0.00 34.61 5.19
317 318 0.320374 AAACGATTCCTGTGAGGCGA 59.680 50.000 0.00 0.00 34.61 5.54
318 319 1.135972 CAAAACGATTCCTGTGAGGCG 60.136 52.381 0.00 0.00 34.61 5.52
319 320 1.401539 GCAAAACGATTCCTGTGAGGC 60.402 52.381 0.00 0.00 34.61 4.70
320 321 2.154462 AGCAAAACGATTCCTGTGAGG 58.846 47.619 0.00 0.00 36.46 3.86
321 322 3.558505 CAAGCAAAACGATTCCTGTGAG 58.441 45.455 0.00 0.00 0.00 3.51
322 323 2.287547 GCAAGCAAAACGATTCCTGTGA 60.288 45.455 0.00 0.00 0.00 3.58
323 324 2.053627 GCAAGCAAAACGATTCCTGTG 58.946 47.619 0.00 0.00 0.00 3.66
324 325 1.956477 AGCAAGCAAAACGATTCCTGT 59.044 42.857 0.00 0.00 0.00 4.00
325 326 2.712057 AGCAAGCAAAACGATTCCTG 57.288 45.000 0.00 0.00 0.00 3.86
326 327 2.863704 GCAAGCAAGCAAAACGATTCCT 60.864 45.455 0.00 0.00 0.00 3.36
327 328 1.456923 GCAAGCAAGCAAAACGATTCC 59.543 47.619 0.00 0.00 0.00 3.01
328 329 2.126467 TGCAAGCAAGCAAAACGATTC 58.874 42.857 0.17 0.00 42.46 2.52
329 330 2.222007 TGCAAGCAAGCAAAACGATT 57.778 40.000 0.17 0.00 42.46 3.34
330 331 3.963676 TGCAAGCAAGCAAAACGAT 57.036 42.105 0.17 0.00 42.46 3.73
340 341 1.417372 GCGCATAAACTTGCAAGCAA 58.583 45.000 26.27 12.11 42.91 3.91
341 342 0.388391 GGCGCATAAACTTGCAAGCA 60.388 50.000 26.27 12.14 42.91 3.91
342 343 0.109132 AGGCGCATAAACTTGCAAGC 60.109 50.000 26.27 11.12 42.91 4.01
343 344 1.987770 CAAGGCGCATAAACTTGCAAG 59.012 47.619 24.84 24.84 42.91 4.01
344 345 2.063156 CAAGGCGCATAAACTTGCAA 57.937 45.000 10.83 0.00 42.91 4.08
345 346 3.790744 CAAGGCGCATAAACTTGCA 57.209 47.368 10.83 0.00 42.91 4.08
347 348 0.243365 TGGCAAGGCGCATAAACTTG 59.757 50.000 10.83 14.21 45.17 3.16
348 349 0.527565 CTGGCAAGGCGCATAAACTT 59.472 50.000 10.83 0.00 45.17 2.66
349 350 0.609131 ACTGGCAAGGCGCATAAACT 60.609 50.000 10.83 0.00 45.17 2.66
350 351 0.243636 AACTGGCAAGGCGCATAAAC 59.756 50.000 10.83 0.00 45.17 2.01
351 352 0.525761 GAACTGGCAAGGCGCATAAA 59.474 50.000 10.83 0.00 45.17 1.40
352 353 1.643868 CGAACTGGCAAGGCGCATAA 61.644 55.000 10.83 0.00 45.17 1.90
353 354 2.106074 CGAACTGGCAAGGCGCATA 61.106 57.895 10.83 0.00 45.17 3.14
354 355 3.434319 CGAACTGGCAAGGCGCAT 61.434 61.111 10.83 0.00 45.17 4.73
363 364 0.749454 AGATTCATGGGCGAACTGGC 60.749 55.000 0.00 0.00 43.88 4.85
364 365 1.019673 CAGATTCATGGGCGAACTGG 58.980 55.000 0.00 0.00 0.00 4.00
365 366 2.028420 TCAGATTCATGGGCGAACTG 57.972 50.000 0.00 0.00 0.00 3.16
366 367 2.026822 AGTTCAGATTCATGGGCGAACT 60.027 45.455 0.00 0.00 38.53 3.01
367 368 2.096496 CAGTTCAGATTCATGGGCGAAC 59.904 50.000 0.00 0.00 34.38 3.95
368 369 2.027285 TCAGTTCAGATTCATGGGCGAA 60.027 45.455 0.00 0.00 0.00 4.70
369 370 1.554617 TCAGTTCAGATTCATGGGCGA 59.445 47.619 0.00 0.00 0.00 5.54
370 371 1.667724 GTCAGTTCAGATTCATGGGCG 59.332 52.381 0.00 0.00 0.00 6.13
371 372 1.667724 CGTCAGTTCAGATTCATGGGC 59.332 52.381 0.00 0.00 0.00 5.36
372 373 3.251479 TCGTCAGTTCAGATTCATGGG 57.749 47.619 0.00 0.00 0.00 4.00
373 374 4.498241 TCTTCGTCAGTTCAGATTCATGG 58.502 43.478 0.00 0.00 0.00 3.66
374 375 5.866092 TCTTCTTCGTCAGTTCAGATTCATG 59.134 40.000 0.00 0.00 0.00 3.07
375 376 6.030548 TCTTCTTCGTCAGTTCAGATTCAT 57.969 37.500 0.00 0.00 0.00 2.57
376 377 5.241728 TCTCTTCTTCGTCAGTTCAGATTCA 59.758 40.000 0.00 0.00 0.00 2.57
377 378 5.704888 TCTCTTCTTCGTCAGTTCAGATTC 58.295 41.667 0.00 0.00 0.00 2.52
378 379 5.336372 CCTCTCTTCTTCGTCAGTTCAGATT 60.336 44.000 0.00 0.00 0.00 2.40
379 380 4.157656 CCTCTCTTCTTCGTCAGTTCAGAT 59.842 45.833 0.00 0.00 0.00 2.90
380 381 3.504134 CCTCTCTTCTTCGTCAGTTCAGA 59.496 47.826 0.00 0.00 0.00 3.27
381 382 3.832276 CCTCTCTTCTTCGTCAGTTCAG 58.168 50.000 0.00 0.00 0.00 3.02
382 383 2.029828 GCCTCTCTTCTTCGTCAGTTCA 60.030 50.000 0.00 0.00 0.00 3.18
383 384 2.601804 GCCTCTCTTCTTCGTCAGTTC 58.398 52.381 0.00 0.00 0.00 3.01
384 385 1.068194 CGCCTCTCTTCTTCGTCAGTT 60.068 52.381 0.00 0.00 0.00 3.16
385 386 0.523966 CGCCTCTCTTCTTCGTCAGT 59.476 55.000 0.00 0.00 0.00 3.41
386 387 0.179150 CCGCCTCTCTTCTTCGTCAG 60.179 60.000 0.00 0.00 0.00 3.51
387 388 1.595993 CCCGCCTCTCTTCTTCGTCA 61.596 60.000 0.00 0.00 0.00 4.35
388 389 1.139947 CCCGCCTCTCTTCTTCGTC 59.860 63.158 0.00 0.00 0.00 4.20
389 390 3.007973 GCCCGCCTCTCTTCTTCGT 62.008 63.158 0.00 0.00 0.00 3.85
390 391 2.202810 GCCCGCCTCTCTTCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
391 392 0.107459 ATTGCCCGCCTCTCTTCTTC 60.107 55.000 0.00 0.00 0.00 2.87
392 393 1.204146 TATTGCCCGCCTCTCTTCTT 58.796 50.000 0.00 0.00 0.00 2.52
393 394 1.428869 ATATTGCCCGCCTCTCTTCT 58.571 50.000 0.00 0.00 0.00 2.85
394 395 3.618690 ATATATTGCCCGCCTCTCTTC 57.381 47.619 0.00 0.00 0.00 2.87
395 396 4.202461 TGAAATATATTGCCCGCCTCTCTT 60.202 41.667 0.00 0.00 0.00 2.85
396 397 3.327757 TGAAATATATTGCCCGCCTCTCT 59.672 43.478 0.00 0.00 0.00 3.10
397 398 3.674997 TGAAATATATTGCCCGCCTCTC 58.325 45.455 0.00 0.00 0.00 3.20
398 399 3.788227 TGAAATATATTGCCCGCCTCT 57.212 42.857 0.00 0.00 0.00 3.69
399 400 3.568007 TGTTGAAATATATTGCCCGCCTC 59.432 43.478 0.00 0.00 0.00 4.70
400 401 3.317993 GTGTTGAAATATATTGCCCGCCT 59.682 43.478 0.00 0.00 0.00 5.52
401 402 3.638484 GTGTTGAAATATATTGCCCGCC 58.362 45.455 0.00 0.00 0.00 6.13
402 403 3.242936 ACGTGTTGAAATATATTGCCCGC 60.243 43.478 0.00 0.00 0.00 6.13
403 404 4.034626 TGACGTGTTGAAATATATTGCCCG 59.965 41.667 0.00 0.32 0.00 6.13
404 405 5.163703 TGTGACGTGTTGAAATATATTGCCC 60.164 40.000 0.00 0.00 0.00 5.36
405 406 5.874831 TGTGACGTGTTGAAATATATTGCC 58.125 37.500 0.00 0.00 0.00 4.52
406 407 7.007367 CAGTTGTGACGTGTTGAAATATATTGC 59.993 37.037 0.00 0.00 0.00 3.56
407 408 8.227119 TCAGTTGTGACGTGTTGAAATATATTG 58.773 33.333 0.00 0.00 0.00 1.90
408 409 8.227791 GTCAGTTGTGACGTGTTGAAATATATT 58.772 33.333 0.00 0.00 43.75 1.28
409 410 7.739295 GTCAGTTGTGACGTGTTGAAATATAT 58.261 34.615 0.00 0.00 43.75 0.86
410 411 7.112528 GTCAGTTGTGACGTGTTGAAATATA 57.887 36.000 0.00 0.00 43.75 0.86
411 412 5.985781 GTCAGTTGTGACGTGTTGAAATAT 58.014 37.500 0.00 0.00 43.75 1.28
412 413 5.398176 GTCAGTTGTGACGTGTTGAAATA 57.602 39.130 0.00 0.00 43.75 1.40
413 414 4.273005 GTCAGTTGTGACGTGTTGAAAT 57.727 40.909 0.00 0.00 43.75 2.17
414 415 3.733024 GTCAGTTGTGACGTGTTGAAA 57.267 42.857 0.00 0.00 43.75 2.69
424 425 3.452990 TGTACCTTTGGAGTCAGTTGTGA 59.547 43.478 0.00 0.00 0.00 3.58
425 426 3.560068 GTGTACCTTTGGAGTCAGTTGTG 59.440 47.826 0.00 0.00 0.00 3.33
426 427 3.454812 AGTGTACCTTTGGAGTCAGTTGT 59.545 43.478 0.00 0.00 0.00 3.32
427 428 4.073293 AGTGTACCTTTGGAGTCAGTTG 57.927 45.455 0.00 0.00 0.00 3.16
428 429 4.080526 ACAAGTGTACCTTTGGAGTCAGTT 60.081 41.667 10.17 0.00 0.00 3.16
429 430 3.454812 ACAAGTGTACCTTTGGAGTCAGT 59.545 43.478 10.17 0.00 0.00 3.41
430 431 3.809832 CACAAGTGTACCTTTGGAGTCAG 59.190 47.826 10.17 0.00 0.00 3.51
431 432 3.804036 CACAAGTGTACCTTTGGAGTCA 58.196 45.455 10.17 0.00 0.00 3.41
432 433 2.548480 GCACAAGTGTACCTTTGGAGTC 59.452 50.000 10.17 0.00 0.00 3.36
433 434 2.092646 TGCACAAGTGTACCTTTGGAGT 60.093 45.455 10.17 0.00 0.00 3.85
434 435 2.571212 TGCACAAGTGTACCTTTGGAG 58.429 47.619 10.17 4.85 0.00 3.86
435 436 2.685897 GTTGCACAAGTGTACCTTTGGA 59.314 45.455 10.17 4.81 0.00 3.53
436 437 2.425312 TGTTGCACAAGTGTACCTTTGG 59.575 45.455 10.17 0.00 0.00 3.28
437 438 3.773860 TGTTGCACAAGTGTACCTTTG 57.226 42.857 1.79 5.24 0.00 2.77
452 453 2.521708 ACCCCTGGTGCTTGTTGC 60.522 61.111 0.00 0.00 43.25 4.17
461 462 0.257039 GATGCTTCATCACCCCTGGT 59.743 55.000 2.22 0.00 40.28 4.00
462 463 0.549950 AGATGCTTCATCACCCCTGG 59.450 55.000 9.19 0.00 42.72 4.45
463 464 1.676746 CAGATGCTTCATCACCCCTG 58.323 55.000 9.19 0.00 42.72 4.45
464 465 0.106819 GCAGATGCTTCATCACCCCT 60.107 55.000 9.19 0.00 42.72 4.79
465 466 2.412605 GCAGATGCTTCATCACCCC 58.587 57.895 9.19 0.00 42.72 4.95
496 497 4.022589 CCCATGTCATATGCCACTTCAATC 60.023 45.833 0.00 0.00 0.00 2.67
517 518 1.257743 GGAAAGAAAAGAGGCACCCC 58.742 55.000 0.00 0.00 0.00 4.95
525 526 7.340743 TGTTGTTGGAATAGTGGAAAGAAAAGA 59.659 33.333 0.00 0.00 0.00 2.52
526 527 7.488322 TGTTGTTGGAATAGTGGAAAGAAAAG 58.512 34.615 0.00 0.00 0.00 2.27
558 559 1.708341 ATGGCCTGCTCACTTTTTGT 58.292 45.000 3.32 0.00 0.00 2.83
559 560 2.825861 AATGGCCTGCTCACTTTTTG 57.174 45.000 3.32 0.00 0.00 2.44
562 563 1.260544 GGAAATGGCCTGCTCACTTT 58.739 50.000 3.32 0.00 0.00 2.66
563 564 0.613012 GGGAAATGGCCTGCTCACTT 60.613 55.000 3.32 0.00 0.00 3.16
586 587 3.669939 ACCCCATGGTTGGAATCTTAG 57.330 47.619 11.73 0.00 44.75 2.18
637 638 2.289756 TGCACTGGATGTAAACGCCTTA 60.290 45.455 0.00 0.00 0.00 2.69
670 671 0.324738 TCTGCCCTCTGAAGATCGGT 60.325 55.000 0.00 0.00 0.00 4.69
686 687 9.160496 AGTTGAGCTCTAAATTTAGAATGTCTG 57.840 33.333 24.41 14.77 39.15 3.51
687 688 9.160496 CAGTTGAGCTCTAAATTTAGAATGTCT 57.840 33.333 24.41 18.52 39.15 3.41
688 689 8.940952 ACAGTTGAGCTCTAAATTTAGAATGTC 58.059 33.333 24.41 20.14 39.15 3.06
698 700 2.619074 GGGCCACAGTTGAGCTCTAAAT 60.619 50.000 16.19 4.22 0.00 1.40
746 748 1.160137 GTGGAGGTCAATGTGCTCAC 58.840 55.000 0.00 0.00 0.00 3.51
771 773 1.003355 AGGAGCATTGTCACCGTGG 60.003 57.895 0.00 0.00 0.00 4.94
868 870 0.957888 GTTCTCCTCCCTTGCTGCAC 60.958 60.000 0.00 0.00 0.00 4.57
891 893 3.067480 GCAATGGCACCATGGACGG 62.067 63.158 21.47 8.64 40.72 4.79
937 939 0.985490 ATCTCCAACCCCTCTGCTCC 60.985 60.000 0.00 0.00 0.00 4.70
1142 1144 3.214696 GGTCCTTACCAGATTCCATGG 57.785 52.381 4.97 4.97 45.98 3.66
1197 1199 1.336240 GGACAAGCATGCCAACAAGAC 60.336 52.381 15.66 0.00 0.00 3.01
1238 1240 6.656270 GTGACCCATCATGCATTATTATCAGA 59.344 38.462 0.00 0.00 37.14 3.27
1239 1241 6.431852 TGTGACCCATCATGCATTATTATCAG 59.568 38.462 0.00 0.00 37.14 2.90
1275 1277 3.327757 TGCAATAGTCTGGGGTCCATATC 59.672 47.826 0.00 0.00 30.82 1.63
1319 1321 4.102524 TGAAGGGTCTTAGTTTTGCTCTCA 59.897 41.667 0.00 0.00 0.00 3.27
1336 1338 5.792741 TCCATTTTGTGCTTATTTGAAGGG 58.207 37.500 0.00 0.00 0.00 3.95
1428 1430 2.223377 CAGGTTCACCGTTTGCTCTTAC 59.777 50.000 0.00 0.00 42.08 2.34
1615 1617 9.429359 CAGTAGACTATCTGAAGAATGTTTGTT 57.571 33.333 6.33 0.00 34.02 2.83
1676 1679 7.652105 GCTACAATCTGATCATGCATCAAAAAT 59.348 33.333 0.00 0.00 41.25 1.82
1728 1731 1.507141 AACTCGCGGTTGCCTTGAAG 61.507 55.000 6.13 0.00 36.70 3.02
1911 1914 4.530094 TTAGCACTGAAACTTGAACGTG 57.470 40.909 0.00 0.00 0.00 4.49
2071 2087 5.295787 GCCTGTAAATATTTCACATGTCCGA 59.704 40.000 3.39 0.00 0.00 4.55
2088 2104 5.104941 AGTGATGCTATACTGTTGCCTGTAA 60.105 40.000 0.00 0.00 0.00 2.41
2090 2106 3.198635 AGTGATGCTATACTGTTGCCTGT 59.801 43.478 0.00 0.00 0.00 4.00
2126 2146 7.719778 TGCATCTAGTAATCAAATGTGCTAG 57.280 36.000 0.00 0.00 0.00 3.42
2189 2209 7.556844 ACTTAGTGGTATTTGATCAGTAGTGG 58.443 38.462 0.00 0.00 0.00 4.00
2218 2238 5.419155 CGTGGGCTATCTTCATCCTTCTATA 59.581 44.000 0.00 0.00 0.00 1.31
2544 2564 2.704725 TTTGATCGCTTGCTGGTTTC 57.295 45.000 0.00 0.00 0.00 2.78
2556 2576 4.700213 ACCCAGTTAACCAAGATTTGATCG 59.300 41.667 0.88 0.00 0.00 3.69
2603 2623 3.525199 AGCATTCTGTATGGGGAAGAAGT 59.475 43.478 0.00 0.00 33.67 3.01
2919 2973 0.658897 TGTTTCTTTTGGGACGCGAC 59.341 50.000 15.93 6.56 0.00 5.19
2925 2979 2.746279 TCAGCCTGTTTCTTTTGGGA 57.254 45.000 0.00 0.00 0.00 4.37
3100 3154 2.738587 TTACACCCTGTTGGCTTCAA 57.261 45.000 0.00 0.00 37.83 2.69
3133 3187 5.010282 AGCCTAAAAGACTTTACACATGGG 58.990 41.667 0.00 0.00 0.00 4.00
3147 3201 3.756117 ACAAGTCAAGGGAGCCTAAAAG 58.244 45.455 0.00 0.00 31.13 2.27
3187 3241 7.845037 TCTATATGACAATTCAGCCTATGGAG 58.155 38.462 0.00 0.00 34.35 3.86
3188 3242 7.797121 TCTATATGACAATTCAGCCTATGGA 57.203 36.000 0.00 0.00 34.35 3.41
3189 3243 8.725148 GTTTCTATATGACAATTCAGCCTATGG 58.275 37.037 0.00 0.00 34.35 2.74
3190 3244 9.499479 AGTTTCTATATGACAATTCAGCCTATG 57.501 33.333 0.00 0.00 34.35 2.23
3193 3247 8.928448 TCTAGTTTCTATATGACAATTCAGCCT 58.072 33.333 0.00 0.00 34.35 4.58
3194 3248 9.547753 TTCTAGTTTCTATATGACAATTCAGCC 57.452 33.333 0.00 0.00 34.35 4.85
3735 3801 5.147032 TCTTTTCTGGTCCACCAATTGATT 58.853 37.500 7.12 0.00 46.97 2.57
3743 3809 3.315470 GTCAAGTTCTTTTCTGGTCCACC 59.685 47.826 0.00 0.00 0.00 4.61
3762 3828 6.464222 AGCTTAGTAAGTTGCAGTATTGTCA 58.536 36.000 11.51 0.00 0.00 3.58
3763 3829 6.969828 AGCTTAGTAAGTTGCAGTATTGTC 57.030 37.500 11.51 0.00 0.00 3.18
3764 3830 8.842358 TTTAGCTTAGTAAGTTGCAGTATTGT 57.158 30.769 11.51 0.00 0.00 2.71
3767 3833 9.280174 TGTTTTTAGCTTAGTAAGTTGCAGTAT 57.720 29.630 11.51 0.00 0.00 2.12
3768 3834 8.665643 TGTTTTTAGCTTAGTAAGTTGCAGTA 57.334 30.769 11.51 0.00 0.00 2.74
3778 3844 9.563748 ACATTTGTACCTGTTTTTAGCTTAGTA 57.436 29.630 0.00 0.00 0.00 1.82
3787 3853 6.816140 CCAACTTCACATTTGTACCTGTTTTT 59.184 34.615 0.00 0.00 0.00 1.94
3791 3857 4.532834 ACCAACTTCACATTTGTACCTGT 58.467 39.130 0.00 0.00 0.00 4.00
3795 3861 6.204882 AGCTCTTACCAACTTCACATTTGTAC 59.795 38.462 0.00 0.00 0.00 2.90
3803 3869 4.023963 GGACAAAGCTCTTACCAACTTCAC 60.024 45.833 0.00 0.00 0.00 3.18
3804 3870 4.134563 GGACAAAGCTCTTACCAACTTCA 58.865 43.478 0.00 0.00 0.00 3.02
3805 3871 4.134563 TGGACAAAGCTCTTACCAACTTC 58.865 43.478 0.00 0.00 0.00 3.01
3811 3878 3.075148 GTCCTTGGACAAAGCTCTTACC 58.925 50.000 14.34 0.00 34.24 2.85
3818 3885 3.518634 TTTGTTGTCCTTGGACAAAGC 57.481 42.857 29.72 20.93 45.26 3.51
3832 3899 6.314896 GTCATCCCAGATCTCTTACTTTGTTG 59.685 42.308 0.00 0.00 0.00 3.33
3833 3900 6.013379 TGTCATCCCAGATCTCTTACTTTGTT 60.013 38.462 0.00 0.00 0.00 2.83
3835 3902 5.982356 TGTCATCCCAGATCTCTTACTTTG 58.018 41.667 0.00 0.00 0.00 2.77
3842 3909 3.705579 CACTTCTGTCATCCCAGATCTCT 59.294 47.826 0.00 0.00 40.96 3.10
3850 3917 2.479566 TTCTGCACTTCTGTCATCCC 57.520 50.000 0.00 0.00 0.00 3.85
3857 3924 6.910995 AGATTTCTCAAATTCTGCACTTCTG 58.089 36.000 0.00 0.00 0.00 3.02
3862 3929 8.078596 ACTGTTTAGATTTCTCAAATTCTGCAC 58.921 33.333 0.00 0.00 0.00 4.57
3921 3988 7.807977 ATATCGTGGAATGTTGCTCTTAATT 57.192 32.000 0.00 0.00 0.00 1.40
3923 3990 7.335673 TCAAATATCGTGGAATGTTGCTCTTAA 59.664 33.333 0.00 0.00 0.00 1.85
3924 3991 6.821160 TCAAATATCGTGGAATGTTGCTCTTA 59.179 34.615 0.00 0.00 0.00 2.10
3926 3993 5.065218 GTCAAATATCGTGGAATGTTGCTCT 59.935 40.000 0.00 0.00 0.00 4.09
3927 3994 5.065218 AGTCAAATATCGTGGAATGTTGCTC 59.935 40.000 0.00 0.00 0.00 4.26
3930 3997 5.030295 GCAGTCAAATATCGTGGAATGTTG 58.970 41.667 0.00 0.00 0.00 3.33
3931 3998 4.699735 TGCAGTCAAATATCGTGGAATGTT 59.300 37.500 0.00 0.00 0.00 2.71
3932 3999 4.260985 TGCAGTCAAATATCGTGGAATGT 58.739 39.130 0.00 0.00 0.00 2.71
3933 4000 4.880886 TGCAGTCAAATATCGTGGAATG 57.119 40.909 0.00 0.00 0.00 2.67
3940 4007 6.122850 TCTTTGGAATGCAGTCAAATATCG 57.877 37.500 16.99 0.86 31.21 2.92
3950 4017 8.537049 TTTTACATGATTTCTTTGGAATGCAG 57.463 30.769 0.00 0.00 0.00 4.41
3973 4040 7.592051 AGAATTTTTGTTGCATGTGTTGTTTT 58.408 26.923 0.00 0.00 0.00 2.43
3974 4041 7.143514 AGAATTTTTGTTGCATGTGTTGTTT 57.856 28.000 0.00 0.00 0.00 2.83
3989 4056 9.007901 ACTCTCCTCAGTTCATTAGAATTTTTG 57.992 33.333 0.00 0.00 35.92 2.44
3990 4057 9.007901 CACTCTCCTCAGTTCATTAGAATTTTT 57.992 33.333 0.00 0.00 35.92 1.94
3999 4066 4.590647 TCAGAACACTCTCCTCAGTTCATT 59.409 41.667 0.00 0.00 42.01 2.57
4015 4082 2.092968 AGTTGCACTTGAGGTCAGAACA 60.093 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.