Multiple sequence alignment - TraesCS1D01G066900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G066900 chr1D 100.000 2456 0 0 1 2456 48456684 48454229 0.000000e+00 4536.0
1 TraesCS1D01G066900 chr1B 92.348 954 62 7 530 1479 68245685 68244739 0.000000e+00 1347.0
2 TraesCS1D01G066900 chr1B 87.257 463 42 5 347 809 68246318 68245873 1.680000e-141 512.0
3 TraesCS1D01G066900 chr1B 81.455 426 50 19 1463 1884 68242003 68241603 3.050000e-84 322.0
4 TraesCS1D01G066900 chr1A 92.152 841 53 7 646 1479 48707445 48706611 0.000000e+00 1175.0
5 TraesCS1D01G066900 chr1A 89.333 300 26 4 1595 1890 48706481 48706184 2.980000e-99 372.0
6 TraesCS1D01G066900 chr1A 100.000 31 0 0 1 31 48707745 48707715 9.490000e-05 58.4
7 TraesCS1D01G066900 chr3D 89.076 238 22 4 38 272 280046393 280046629 2.390000e-75 292.0
8 TraesCS1D01G066900 chr3D 87.917 240 25 4 37 272 592581978 592581739 1.860000e-71 279.0
9 TraesCS1D01G066900 chr2B 88.655 238 24 3 38 272 718486211 718486448 1.110000e-73 287.0
10 TraesCS1D01G066900 chr2B 86.100 259 32 4 37 291 227931336 227931594 2.410000e-70 276.0
11 TraesCS1D01G066900 chr7B 87.917 240 25 4 38 273 649335128 649334889 1.860000e-71 279.0
12 TraesCS1D01G066900 chr7B 87.448 239 27 3 37 272 161865504 161865266 3.110000e-69 272.0
13 TraesCS1D01G066900 chr4D 87.552 241 24 6 37 272 488803993 488804232 8.650000e-70 274.0
14 TraesCS1D01G066900 chr6B 87.448 239 26 4 38 272 583242332 583242094 3.110000e-69 272.0
15 TraesCS1D01G066900 chr7A 87.448 239 25 5 38 272 421714 421951 1.120000e-68 270.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G066900 chr1D 48454229 48456684 2455 True 4536.000000 4536 100.000000 1 2456 1 chr1D.!!$R1 2455
1 TraesCS1D01G066900 chr1B 68241603 68246318 4715 True 727.000000 1347 87.020000 347 1884 3 chr1B.!!$R1 1537
2 TraesCS1D01G066900 chr1A 48706184 48707745 1561 True 535.133333 1175 93.828333 1 1890 3 chr1A.!!$R1 1889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 398 0.179 CTCTGGGAAATCTGGGACGG 59.821 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 5544 0.037232 AGCGGCCTACAGTGAGAAAC 60.037 55.0 0.0 0.0 0.0 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.867166 GGCTTCGCCTTAGGATGTAC 58.133 55.000 0.69 0.00 46.69 2.90
40 41 1.413077 GGCTTCGCCTTAGGATGTACT 59.587 52.381 0.69 0.00 46.69 2.73
41 42 2.626743 GGCTTCGCCTTAGGATGTACTA 59.373 50.000 0.69 0.00 46.69 1.82
42 43 3.258622 GGCTTCGCCTTAGGATGTACTAT 59.741 47.826 0.69 0.00 46.69 2.12
43 44 4.487019 GCTTCGCCTTAGGATGTACTATC 58.513 47.826 0.69 0.00 0.00 2.08
44 45 4.218852 GCTTCGCCTTAGGATGTACTATCT 59.781 45.833 0.69 0.00 0.00 1.98
45 46 5.620429 GCTTCGCCTTAGGATGTACTATCTC 60.620 48.000 0.69 0.00 0.00 2.75
46 47 4.333690 TCGCCTTAGGATGTACTATCTCC 58.666 47.826 0.69 0.00 0.00 3.71
47 48 3.127203 CGCCTTAGGATGTACTATCTCCG 59.873 52.174 0.69 0.00 34.13 4.63
48 49 4.080687 GCCTTAGGATGTACTATCTCCGT 58.919 47.826 0.69 0.00 34.13 4.69
49 50 4.156373 GCCTTAGGATGTACTATCTCCGTC 59.844 50.000 0.69 0.00 34.13 4.79
50 51 4.701171 CCTTAGGATGTACTATCTCCGTCC 59.299 50.000 0.00 0.00 35.00 4.79
51 52 5.515184 CCTTAGGATGTACTATCTCCGTCCT 60.515 48.000 0.00 0.00 44.70 3.85
52 53 3.757270 AGGATGTACTATCTCCGTCCTG 58.243 50.000 0.00 0.00 41.85 3.86
53 54 2.820787 GGATGTACTATCTCCGTCCTGG 59.179 54.545 0.00 0.00 40.09 4.45
54 55 3.488363 GATGTACTATCTCCGTCCTGGT 58.512 50.000 0.00 0.00 39.52 4.00
55 56 3.377253 TGTACTATCTCCGTCCTGGTT 57.623 47.619 0.00 0.00 39.52 3.67
56 57 3.705051 TGTACTATCTCCGTCCTGGTTT 58.295 45.455 0.00 0.00 39.52 3.27
57 58 4.858850 TGTACTATCTCCGTCCTGGTTTA 58.141 43.478 0.00 0.00 39.52 2.01
58 59 5.452255 TGTACTATCTCCGTCCTGGTTTAT 58.548 41.667 0.00 0.00 39.52 1.40
59 60 5.895534 TGTACTATCTCCGTCCTGGTTTATT 59.104 40.000 0.00 0.00 39.52 1.40
60 61 5.277857 ACTATCTCCGTCCTGGTTTATTG 57.722 43.478 0.00 0.00 39.52 1.90
61 62 3.560636 ATCTCCGTCCTGGTTTATTGG 57.439 47.619 0.00 0.00 39.52 3.16
62 63 2.262637 TCTCCGTCCTGGTTTATTGGT 58.737 47.619 0.00 0.00 39.52 3.67
63 64 2.235402 TCTCCGTCCTGGTTTATTGGTC 59.765 50.000 0.00 0.00 39.52 4.02
64 65 1.279846 TCCGTCCTGGTTTATTGGTCC 59.720 52.381 0.00 0.00 39.52 4.46
65 66 1.680860 CCGTCCTGGTTTATTGGTCCC 60.681 57.143 0.00 0.00 0.00 4.46
66 67 1.680860 CGTCCTGGTTTATTGGTCCCC 60.681 57.143 0.00 0.00 0.00 4.81
67 68 1.639108 GTCCTGGTTTATTGGTCCCCT 59.361 52.381 0.00 0.00 0.00 4.79
68 69 2.042569 GTCCTGGTTTATTGGTCCCCTT 59.957 50.000 0.00 0.00 0.00 3.95
69 70 2.725227 TCCTGGTTTATTGGTCCCCTTT 59.275 45.455 0.00 0.00 0.00 3.11
70 71 2.831526 CCTGGTTTATTGGTCCCCTTTG 59.168 50.000 0.00 0.00 0.00 2.77
71 72 3.506398 CTGGTTTATTGGTCCCCTTTGT 58.494 45.455 0.00 0.00 0.00 2.83
72 73 4.509482 CCTGGTTTATTGGTCCCCTTTGTA 60.509 45.833 0.00 0.00 0.00 2.41
73 74 5.269189 CTGGTTTATTGGTCCCCTTTGTAT 58.731 41.667 0.00 0.00 0.00 2.29
74 75 5.656420 TGGTTTATTGGTCCCCTTTGTATT 58.344 37.500 0.00 0.00 0.00 1.89
75 76 6.085416 TGGTTTATTGGTCCCCTTTGTATTT 58.915 36.000 0.00 0.00 0.00 1.40
76 77 6.559157 TGGTTTATTGGTCCCCTTTGTATTTT 59.441 34.615 0.00 0.00 0.00 1.82
77 78 6.876789 GGTTTATTGGTCCCCTTTGTATTTTG 59.123 38.462 0.00 0.00 0.00 2.44
78 79 7.446769 GTTTATTGGTCCCCTTTGTATTTTGT 58.553 34.615 0.00 0.00 0.00 2.83
79 80 4.946478 TTGGTCCCCTTTGTATTTTGTG 57.054 40.909 0.00 0.00 0.00 3.33
80 81 3.917300 TGGTCCCCTTTGTATTTTGTGT 58.083 40.909 0.00 0.00 0.00 3.72
81 82 3.892588 TGGTCCCCTTTGTATTTTGTGTC 59.107 43.478 0.00 0.00 0.00 3.67
82 83 3.892588 GGTCCCCTTTGTATTTTGTGTCA 59.107 43.478 0.00 0.00 0.00 3.58
83 84 4.342665 GGTCCCCTTTGTATTTTGTGTCAA 59.657 41.667 0.00 0.00 0.00 3.18
84 85 5.163395 GGTCCCCTTTGTATTTTGTGTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
85 86 6.463755 GGTCCCCTTTGTATTTTGTGTCAAAT 60.464 38.462 0.00 0.00 31.08 2.32
86 87 6.989759 GTCCCCTTTGTATTTTGTGTCAAATT 59.010 34.615 0.00 0.00 31.08 1.82
87 88 7.497579 GTCCCCTTTGTATTTTGTGTCAAATTT 59.502 33.333 0.00 0.00 31.08 1.82
88 89 8.049721 TCCCCTTTGTATTTTGTGTCAAATTTT 58.950 29.630 0.00 0.00 31.08 1.82
89 90 8.127954 CCCCTTTGTATTTTGTGTCAAATTTTG 58.872 33.333 2.59 2.59 31.08 2.44
90 91 8.887717 CCCTTTGTATTTTGTGTCAAATTTTGA 58.112 29.630 7.74 7.74 37.33 2.69
144 145 8.933807 TGCATGTCACAAAAATTATATTGTTGG 58.066 29.630 7.12 0.00 37.66 3.77
145 146 9.149225 GCATGTCACAAAAATTATATTGTTGGA 57.851 29.630 7.12 0.57 37.66 3.53
230 231 8.133024 AGTTAAATCTATGGTCAAATTTGGCA 57.867 30.769 23.34 10.65 33.59 4.92
231 232 8.034804 AGTTAAATCTATGGTCAAATTTGGCAC 58.965 33.333 23.34 12.49 33.59 5.01
232 233 5.999205 AATCTATGGTCAAATTTGGCACA 57.001 34.783 23.34 18.08 33.59 4.57
246 247 1.815613 TGGCACAAAATACGATGTGGG 59.184 47.619 7.87 0.00 45.46 4.61
247 248 1.469079 GGCACAAAATACGATGTGGGC 60.469 52.381 7.87 0.00 45.46 5.36
248 249 1.469079 GCACAAAATACGATGTGGGCC 60.469 52.381 0.00 0.00 45.46 5.80
249 250 1.815613 CACAAAATACGATGTGGGCCA 59.184 47.619 0.00 0.00 42.46 5.36
250 251 2.230025 CACAAAATACGATGTGGGCCAA 59.770 45.455 8.40 0.00 42.46 4.52
251 252 3.096092 ACAAAATACGATGTGGGCCAAT 58.904 40.909 8.40 4.09 0.00 3.16
252 253 4.097135 CACAAAATACGATGTGGGCCAATA 59.903 41.667 8.40 0.00 42.46 1.90
253 254 4.707448 ACAAAATACGATGTGGGCCAATAA 59.293 37.500 8.40 0.00 0.00 1.40
254 255 5.186021 ACAAAATACGATGTGGGCCAATAAA 59.814 36.000 8.40 0.00 0.00 1.40
255 256 4.911514 AATACGATGTGGGCCAATAAAC 57.088 40.909 8.40 0.00 0.00 2.01
256 257 1.470051 ACGATGTGGGCCAATAAACC 58.530 50.000 8.40 0.00 0.00 3.27
257 258 1.272203 ACGATGTGGGCCAATAAACCA 60.272 47.619 8.40 0.00 0.00 3.67
258 259 1.405105 CGATGTGGGCCAATAAACCAG 59.595 52.381 8.40 0.00 34.39 4.00
259 260 2.733956 GATGTGGGCCAATAAACCAGA 58.266 47.619 8.40 0.00 34.39 3.86
260 261 2.685106 TGTGGGCCAATAAACCAGAA 57.315 45.000 8.40 0.00 34.39 3.02
261 262 2.243810 TGTGGGCCAATAAACCAGAAC 58.756 47.619 8.40 0.00 34.39 3.01
262 263 2.158385 TGTGGGCCAATAAACCAGAACT 60.158 45.455 8.40 0.00 34.39 3.01
263 264 2.231235 GTGGGCCAATAAACCAGAACTG 59.769 50.000 8.40 0.00 34.39 3.16
264 265 2.109128 TGGGCCAATAAACCAGAACTGA 59.891 45.455 2.13 0.00 0.00 3.41
265 266 3.245586 TGGGCCAATAAACCAGAACTGAT 60.246 43.478 2.13 0.00 0.00 2.90
266 267 3.131046 GGGCCAATAAACCAGAACTGATG 59.869 47.826 4.39 0.00 0.00 3.07
267 268 3.763897 GGCCAATAAACCAGAACTGATGT 59.236 43.478 0.00 0.00 0.00 3.06
268 269 4.947388 GGCCAATAAACCAGAACTGATGTA 59.053 41.667 0.00 0.00 0.00 2.29
269 270 5.066505 GGCCAATAAACCAGAACTGATGTAG 59.933 44.000 0.00 0.00 0.00 2.74
270 271 5.648092 GCCAATAAACCAGAACTGATGTAGT 59.352 40.000 3.19 0.00 42.89 2.73
274 275 9.046296 CAATAAACCAGAACTGATGTAGTATCC 57.954 37.037 3.19 0.00 39.18 2.59
300 301 1.003464 GGATTGGGCCAACTTGCAAAT 59.997 47.619 23.59 2.06 0.00 2.32
301 302 2.349590 GATTGGGCCAACTTGCAAATC 58.650 47.619 23.59 8.88 32.38 2.17
317 318 5.804639 TGCAAATCTCTAGCTAAAGGTGAA 58.195 37.500 0.00 0.00 0.00 3.18
321 322 5.662674 ATCTCTAGCTAAAGGTGAACGTT 57.337 39.130 0.00 0.00 0.00 3.99
322 323 4.806330 TCTCTAGCTAAAGGTGAACGTTG 58.194 43.478 5.00 0.00 0.00 4.10
342 343 1.615651 GGTCACACACCAATGGCCATA 60.616 52.381 21.15 0.00 45.98 2.74
378 379 1.869767 CGTCCTTGCTAATGCTCATCC 59.130 52.381 0.00 0.00 40.48 3.51
379 380 2.484417 CGTCCTTGCTAATGCTCATCCT 60.484 50.000 0.00 0.00 40.48 3.24
393 394 2.106166 CTCATCCTCTGGGAAATCTGGG 59.894 54.545 0.00 0.00 45.78 4.45
397 398 0.179000 CTCTGGGAAATCTGGGACGG 59.821 60.000 0.00 0.00 0.00 4.79
412 413 1.017387 GACGGGAGAAATGCATGGAC 58.983 55.000 0.00 0.00 0.00 4.02
437 450 3.510388 TTGGAATGTCTACTCTCTGCG 57.490 47.619 0.00 0.00 0.00 5.18
468 481 9.042008 ACTATTATTGCCACTGTAAATAACGAG 57.958 33.333 0.00 7.60 30.73 4.18
469 482 9.256477 CTATTATTGCCACTGTAAATAACGAGA 57.744 33.333 0.00 0.00 30.73 4.04
488 501 1.674962 GAGGCTTCATGTGGAGCATTC 59.325 52.381 14.82 8.14 35.19 2.67
492 505 0.617935 TTCATGTGGAGCATTCCCGA 59.382 50.000 0.00 0.00 43.33 5.14
523 536 9.739276 AGTATTTGAGATCAGTTATGTTGGAAA 57.261 29.630 0.00 0.00 0.00 3.13
532 545 6.597562 TCAGTTATGTTGGAAAAGTAGTGGT 58.402 36.000 0.00 0.00 0.00 4.16
535 548 7.647715 CAGTTATGTTGGAAAAGTAGTGGTTTG 59.352 37.037 0.00 0.00 0.00 2.93
546 559 9.194271 GAAAAGTAGTGGTTTGTGTTTTTGTTA 57.806 29.630 0.00 0.00 0.00 2.41
547 560 9.543783 AAAAGTAGTGGTTTGTGTTTTTGTTAA 57.456 25.926 0.00 0.00 0.00 2.01
554 567 3.889520 TGTGTTTTTGTTAACCCCACC 57.110 42.857 2.48 0.00 0.00 4.61
561 574 4.397832 TTAACCCCACCGGCGAGC 62.398 66.667 9.30 0.00 33.26 5.03
583 596 5.127031 AGCGGGTGTTGAATATTGCTAAAAT 59.873 36.000 0.00 0.00 0.00 1.82
638 651 7.838771 GCTTTTGCCTCTTAATCAATGAAAT 57.161 32.000 0.00 0.00 40.15 2.17
639 652 7.681903 GCTTTTGCCTCTTAATCAATGAAATG 58.318 34.615 0.00 0.00 40.15 2.32
641 654 8.991243 TTTTGCCTCTTAATCAATGAAATGAG 57.009 30.769 0.00 0.00 31.76 2.90
644 657 5.755813 CCTCTTAATCAATGAAATGAGGCG 58.244 41.667 13.88 0.00 34.35 5.52
665 678 4.982295 GCGAAGTTTTTGCCTCTGTTTAAT 59.018 37.500 0.00 0.00 33.83 1.40
701 714 7.463544 CGTGAGAGCACACATATTTATGAAAA 58.536 34.615 4.63 0.00 45.41 2.29
724 737 2.726821 TGGGGCTTTTCAAGATAGCTG 58.273 47.619 0.00 0.00 35.30 4.24
735 748 5.876651 TCAAGATAGCTGATACCACATGT 57.123 39.130 0.00 0.00 0.00 3.21
737 750 7.544804 TCAAGATAGCTGATACCACATGTAT 57.455 36.000 0.00 0.00 42.95 2.29
952 1441 5.074929 TCATCATAGGGCCACCAAATAATCT 59.925 40.000 6.18 0.00 40.13 2.40
953 1442 4.728772 TCATAGGGCCACCAAATAATCTG 58.271 43.478 6.18 0.00 40.13 2.90
969 1458 0.679505 TCTGAACTTGGGACACTCCG 59.320 55.000 0.00 0.00 39.29 4.63
991 1480 5.445939 CCGCATTTGTTTGTGCTACTAGTAG 60.446 44.000 23.25 23.25 39.16 2.57
1041 1530 2.099405 AGACTAGCTCTGTGGCTTCTC 58.901 52.381 0.00 0.00 42.97 2.87
1218 1707 1.982395 CCTAGTCTGGGACGTGGCA 60.982 63.158 0.00 0.00 37.67 4.92
1233 1722 4.357947 GCAGTGGCCGTCGTCTCA 62.358 66.667 0.00 0.00 0.00 3.27
1323 1812 3.092511 ATGGAGGCAGCACGGGAT 61.093 61.111 0.00 0.00 0.00 3.85
1358 1847 4.070552 GAAGGCGCTCACGGAGGT 62.071 66.667 7.64 0.00 40.57 3.85
1479 4718 8.585018 TGATGGTACGATATAGATGTCATTTGT 58.415 33.333 0.00 0.00 0.00 2.83
1521 4760 1.944024 CACGGAGTAAGGTGCAAACAA 59.056 47.619 0.00 0.00 41.61 2.83
1524 4763 2.811431 CGGAGTAAGGTGCAAACAATCA 59.189 45.455 0.00 0.00 0.00 2.57
1559 4800 7.377398 TCATTTGGGGCGAAATATTCATATTG 58.623 34.615 0.00 0.00 33.51 1.90
1564 4805 6.149633 GGGGCGAAATATTCATATTGTTCAC 58.850 40.000 0.00 0.00 33.51 3.18
1583 4824 5.873179 TCACGTGAAATTTATGGAGGTTC 57.127 39.130 17.62 0.00 0.00 3.62
1584 4825 5.309638 TCACGTGAAATTTATGGAGGTTCA 58.690 37.500 17.62 0.00 0.00 3.18
1585 4826 5.180492 TCACGTGAAATTTATGGAGGTTCAC 59.820 40.000 17.62 5.05 42.89 3.18
1588 4829 5.390613 GTGAAATTTATGGAGGTTCACGTG 58.609 41.667 9.94 9.94 38.87 4.49
1590 4831 5.533154 TGAAATTTATGGAGGTTCACGTGTT 59.467 36.000 16.51 0.00 0.00 3.32
1591 4832 6.711194 TGAAATTTATGGAGGTTCACGTGTTA 59.289 34.615 16.51 1.96 0.00 2.41
1592 4833 7.392113 TGAAATTTATGGAGGTTCACGTGTTAT 59.608 33.333 16.51 0.00 0.00 1.89
1593 4834 8.795842 AAATTTATGGAGGTTCACGTGTTATA 57.204 30.769 16.51 0.00 0.00 0.98
1608 4870 6.145534 CACGTGTTATAGTGTGTTTCAGACAT 59.854 38.462 7.58 0.00 41.10 3.06
1655 4917 4.158394 GGTACCCTGACACGTAATCTGTTA 59.842 45.833 0.00 0.00 0.00 2.41
1796 5061 8.892723 TCGTGCATTTCTATAAATCTTCACAAT 58.107 29.630 0.00 0.00 32.87 2.71
1811 5076 4.920640 TCACAATTTTTGGAAACGGCTA 57.079 36.364 0.00 0.00 34.12 3.93
1813 5078 4.580995 TCACAATTTTTGGAAACGGCTAGA 59.419 37.500 0.00 0.00 34.12 2.43
1816 5081 4.766404 ATTTTTGGAAACGGCTAGACTG 57.234 40.909 0.00 0.00 0.00 3.51
1850 5115 5.695851 AAATCATGCATTTCGGGAGATAC 57.304 39.130 0.00 0.00 39.57 2.24
1863 5129 4.404394 TCGGGAGATACTCATGCAACTTTA 59.596 41.667 0.00 0.00 31.08 1.85
1864 5130 5.105106 TCGGGAGATACTCATGCAACTTTAA 60.105 40.000 0.00 0.00 31.08 1.52
1890 5156 6.767524 AAACCACTCAATTTGAACAGTGTA 57.232 33.333 13.21 0.00 0.00 2.90
1891 5157 6.767524 AACCACTCAATTTGAACAGTGTAA 57.232 33.333 13.21 0.00 0.00 2.41
1892 5158 6.767524 ACCACTCAATTTGAACAGTGTAAA 57.232 33.333 13.21 0.00 0.00 2.01
1893 5159 7.164230 ACCACTCAATTTGAACAGTGTAAAA 57.836 32.000 13.21 1.08 0.00 1.52
1894 5160 7.607250 ACCACTCAATTTGAACAGTGTAAAAA 58.393 30.769 13.21 0.69 0.00 1.94
1921 5187 8.895932 AATCTTTATAACTGTGAAATGTTCGC 57.104 30.769 0.00 0.00 40.51 4.70
1922 5188 7.667043 TCTTTATAACTGTGAAATGTTCGCT 57.333 32.000 3.47 0.00 40.72 4.93
1923 5189 8.094798 TCTTTATAACTGTGAAATGTTCGCTT 57.905 30.769 3.47 0.00 40.72 4.68
1924 5190 9.210329 TCTTTATAACTGTGAAATGTTCGCTTA 57.790 29.630 3.47 0.00 40.72 3.09
1925 5191 9.988350 CTTTATAACTGTGAAATGTTCGCTTAT 57.012 29.630 3.47 3.32 40.72 1.73
1928 5194 8.895932 ATAACTGTGAAATGTTCGCTTATTTC 57.104 30.769 0.00 0.00 41.42 2.17
1929 5195 6.560253 ACTGTGAAATGTTCGCTTATTTCT 57.440 33.333 14.61 0.00 41.54 2.52
1930 5196 6.970484 ACTGTGAAATGTTCGCTTATTTCTT 58.030 32.000 14.61 1.28 41.54 2.52
1931 5197 8.094798 ACTGTGAAATGTTCGCTTATTTCTTA 57.905 30.769 14.61 6.93 41.54 2.10
1932 5198 8.564574 ACTGTGAAATGTTCGCTTATTTCTTAA 58.435 29.630 14.61 4.89 41.54 1.85
1933 5199 9.559958 CTGTGAAATGTTCGCTTATTTCTTAAT 57.440 29.630 14.61 0.00 41.54 1.40
1940 5206 8.725405 TGTTCGCTTATTTCTTAATATGTCCA 57.275 30.769 0.00 0.00 0.00 4.02
1941 5207 8.826710 TGTTCGCTTATTTCTTAATATGTCCAG 58.173 33.333 0.00 0.00 0.00 3.86
1942 5208 9.042008 GTTCGCTTATTTCTTAATATGTCCAGA 57.958 33.333 0.00 0.00 0.00 3.86
1943 5209 8.589335 TCGCTTATTTCTTAATATGTCCAGAC 57.411 34.615 0.00 0.00 0.00 3.51
1944 5210 8.201464 TCGCTTATTTCTTAATATGTCCAGACA 58.799 33.333 2.42 2.42 46.44 3.41
1945 5211 8.826710 CGCTTATTTCTTAATATGTCCAGACAA 58.173 33.333 4.31 0.00 45.41 3.18
1975 5241 9.656040 AAAAAGTGTTCGGGTATTTTTAAAAGT 57.344 25.926 0.14 0.78 32.80 2.66
1979 5245 9.902196 AGTGTTCGGGTATTTTTAAAAGTATTG 57.098 29.630 6.46 1.40 0.00 1.90
1980 5246 9.896263 GTGTTCGGGTATTTTTAAAAGTATTGA 57.104 29.630 6.46 3.35 0.00 2.57
1981 5247 9.896263 TGTTCGGGTATTTTTAAAAGTATTGAC 57.104 29.630 6.46 0.00 0.00 3.18
1982 5248 9.896263 GTTCGGGTATTTTTAAAAGTATTGACA 57.104 29.630 6.46 0.00 0.00 3.58
1983 5249 9.896263 TTCGGGTATTTTTAAAAGTATTGACAC 57.104 29.630 6.46 0.00 0.00 3.67
1984 5250 9.064706 TCGGGTATTTTTAAAAGTATTGACACA 57.935 29.630 6.46 0.00 0.00 3.72
1985 5251 9.849166 CGGGTATTTTTAAAAGTATTGACACAT 57.151 29.630 6.46 0.00 0.00 3.21
2019 5285 9.829507 AATGTTCATCAAATTAAAAAGTGTGGA 57.170 25.926 0.00 0.00 0.00 4.02
2020 5286 8.641499 TGTTCATCAAATTAAAAAGTGTGGAC 57.359 30.769 0.00 0.00 0.00 4.02
2021 5287 8.253810 TGTTCATCAAATTAAAAAGTGTGGACA 58.746 29.630 0.00 0.00 0.00 4.02
2022 5288 9.092876 GTTCATCAAATTAAAAAGTGTGGACAA 57.907 29.630 0.00 0.00 0.00 3.18
2023 5289 9.658799 TTCATCAAATTAAAAAGTGTGGACAAA 57.341 25.926 0.00 0.00 0.00 2.83
2024 5290 9.658799 TCATCAAATTAAAAAGTGTGGACAAAA 57.341 25.926 0.00 0.00 0.00 2.44
2030 5296 9.442047 AATTAAAAAGTGTGGACAAAATTCACA 57.558 25.926 0.00 0.00 38.84 3.58
2031 5297 8.833231 TTAAAAAGTGTGGACAAAATTCACAA 57.167 26.923 0.00 0.00 42.11 3.33
2032 5298 7.736447 AAAAAGTGTGGACAAAATTCACAAA 57.264 28.000 0.00 0.00 42.11 2.83
2033 5299 6.966435 AAAGTGTGGACAAAATTCACAAAG 57.034 33.333 0.00 0.00 42.11 2.77
2034 5300 5.009854 AGTGTGGACAAAATTCACAAAGG 57.990 39.130 0.00 0.00 42.11 3.11
2035 5301 4.709397 AGTGTGGACAAAATTCACAAAGGA 59.291 37.500 0.00 0.00 42.11 3.36
2036 5302 5.186797 AGTGTGGACAAAATTCACAAAGGAA 59.813 36.000 0.00 0.00 42.11 3.36
2037 5303 5.872070 GTGTGGACAAAATTCACAAAGGAAA 59.128 36.000 0.00 0.00 42.11 3.13
2038 5304 6.370166 GTGTGGACAAAATTCACAAAGGAAAA 59.630 34.615 0.00 0.00 42.11 2.29
2039 5305 6.936900 TGTGGACAAAATTCACAAAGGAAAAA 59.063 30.769 0.00 0.00 38.30 1.94
2040 5306 7.609532 TGTGGACAAAATTCACAAAGGAAAAAT 59.390 29.630 0.00 0.00 38.30 1.82
2041 5307 9.103861 GTGGACAAAATTCACAAAGGAAAAATA 57.896 29.630 0.00 0.00 0.00 1.40
2042 5308 9.672673 TGGACAAAATTCACAAAGGAAAAATAA 57.327 25.926 0.00 0.00 0.00 1.40
2151 5417 9.952030 AAAAACTAGAAATGAACAAAAAGGGAA 57.048 25.926 0.00 0.00 0.00 3.97
2152 5418 9.952030 AAAACTAGAAATGAACAAAAAGGGAAA 57.048 25.926 0.00 0.00 0.00 3.13
2153 5419 9.952030 AAACTAGAAATGAACAAAAAGGGAAAA 57.048 25.926 0.00 0.00 0.00 2.29
2154 5420 9.599866 AACTAGAAATGAACAAAAAGGGAAAAG 57.400 29.630 0.00 0.00 0.00 2.27
2155 5421 8.977412 ACTAGAAATGAACAAAAAGGGAAAAGA 58.023 29.630 0.00 0.00 0.00 2.52
2156 5422 9.249457 CTAGAAATGAACAAAAAGGGAAAAGAC 57.751 33.333 0.00 0.00 0.00 3.01
2157 5423 7.047891 AGAAATGAACAAAAAGGGAAAAGACC 58.952 34.615 0.00 0.00 0.00 3.85
2171 5437 6.063496 GGAAAAGACCCAGAAATACCTAGT 57.937 41.667 0.00 0.00 0.00 2.57
2172 5438 6.114089 GGAAAAGACCCAGAAATACCTAGTC 58.886 44.000 0.00 0.00 0.00 2.59
2173 5439 5.695424 AAAGACCCAGAAATACCTAGTCC 57.305 43.478 0.00 0.00 0.00 3.85
2174 5440 3.297736 AGACCCAGAAATACCTAGTCCG 58.702 50.000 0.00 0.00 0.00 4.79
2175 5441 2.364647 GACCCAGAAATACCTAGTCCGG 59.635 54.545 0.00 0.00 0.00 5.14
2176 5442 1.070289 CCCAGAAATACCTAGTCCGGC 59.930 57.143 0.00 0.00 0.00 6.13
2177 5443 1.269621 CCAGAAATACCTAGTCCGGCG 60.270 57.143 0.00 0.00 0.00 6.46
2178 5444 1.038280 AGAAATACCTAGTCCGGCGG 58.962 55.000 22.51 22.51 0.00 6.13
2179 5445 0.599466 GAAATACCTAGTCCGGCGGC 60.599 60.000 23.83 16.81 0.00 6.53
2180 5446 1.332144 AAATACCTAGTCCGGCGGCA 61.332 55.000 23.83 7.61 0.00 5.69
2181 5447 1.745320 AATACCTAGTCCGGCGGCAG 61.745 60.000 23.83 17.31 0.00 4.85
2182 5448 2.923634 ATACCTAGTCCGGCGGCAGT 62.924 60.000 23.83 15.37 0.00 4.40
2183 5449 2.269520 TACCTAGTCCGGCGGCAGTA 62.270 60.000 23.83 15.68 0.00 2.74
2184 5450 2.420568 CCTAGTCCGGCGGCAGTAA 61.421 63.158 23.83 0.00 0.00 2.24
2185 5451 1.514087 CTAGTCCGGCGGCAGTAAA 59.486 57.895 23.83 0.00 0.00 2.01
2186 5452 0.104304 CTAGTCCGGCGGCAGTAAAT 59.896 55.000 23.83 5.24 0.00 1.40
2187 5453 0.538118 TAGTCCGGCGGCAGTAAATT 59.462 50.000 23.83 1.65 0.00 1.82
2188 5454 0.322187 AGTCCGGCGGCAGTAAATTT 60.322 50.000 23.83 0.00 0.00 1.82
2189 5455 0.524414 GTCCGGCGGCAGTAAATTTT 59.476 50.000 23.83 0.00 0.00 1.82
2190 5456 1.068125 GTCCGGCGGCAGTAAATTTTT 60.068 47.619 23.83 0.00 0.00 1.94
2208 5474 0.899019 TTTTAAGCAAATCCGGGGGC 59.101 50.000 0.00 0.00 0.00 5.80
2209 5475 0.251832 TTTAAGCAAATCCGGGGGCA 60.252 50.000 0.00 0.00 0.00 5.36
2210 5476 0.682855 TTAAGCAAATCCGGGGGCAG 60.683 55.000 0.00 0.00 0.00 4.85
2213 5479 4.794648 CAAATCCGGGGGCAGCGA 62.795 66.667 0.00 0.00 0.00 4.93
2214 5480 4.041762 AAATCCGGGGGCAGCGAA 62.042 61.111 0.00 0.00 0.00 4.70
2215 5481 3.358932 AAATCCGGGGGCAGCGAAT 62.359 57.895 0.00 0.00 0.00 3.34
2216 5482 2.854300 AAATCCGGGGGCAGCGAATT 62.854 55.000 0.00 0.00 0.00 2.17
2217 5483 4.794648 TCCGGGGGCAGCGAATTG 62.795 66.667 0.00 0.00 0.00 2.32
2219 5485 4.794648 CGGGGGCAGCGAATTGGA 62.795 66.667 0.00 0.00 0.00 3.53
2220 5486 3.140814 GGGGGCAGCGAATTGGAC 61.141 66.667 0.00 0.00 0.00 4.02
2221 5487 3.508840 GGGGCAGCGAATTGGACG 61.509 66.667 0.00 0.00 0.00 4.79
2222 5488 2.435938 GGGCAGCGAATTGGACGA 60.436 61.111 0.00 0.00 0.00 4.20
2223 5489 2.750888 GGGCAGCGAATTGGACGAC 61.751 63.158 0.00 0.00 0.00 4.34
2224 5490 2.750888 GGCAGCGAATTGGACGACC 61.751 63.158 0.00 0.00 0.00 4.79
2225 5491 2.032634 GCAGCGAATTGGACGACCA 61.033 57.895 1.37 1.37 45.34 4.02
2226 5492 1.369091 GCAGCGAATTGGACGACCAT 61.369 55.000 7.61 0.00 46.34 3.55
2227 5493 0.652592 CAGCGAATTGGACGACCATC 59.347 55.000 7.61 2.32 46.34 3.51
2228 5494 0.537188 AGCGAATTGGACGACCATCT 59.463 50.000 7.61 0.00 46.34 2.90
2229 5495 0.652592 GCGAATTGGACGACCATCTG 59.347 55.000 7.61 0.00 46.34 2.90
2230 5496 1.290203 CGAATTGGACGACCATCTGG 58.710 55.000 7.61 0.00 46.34 3.86
2248 5514 0.165295 GGTCGCAACCGTAAAAGAGC 59.835 55.000 0.00 0.00 35.36 4.09
2249 5515 0.179258 GTCGCAACCGTAAAAGAGCG 60.179 55.000 0.00 0.00 45.79 5.03
2254 5520 3.861263 CCGTAAAAGAGCGGCGGC 61.861 66.667 9.78 8.43 41.53 6.53
2265 5531 4.899239 CGGCGGCTCATGAGGGTC 62.899 72.222 23.89 7.53 0.00 4.46
2266 5532 3.474570 GGCGGCTCATGAGGGTCT 61.475 66.667 23.89 0.00 0.00 3.85
2267 5533 2.134287 GGCGGCTCATGAGGGTCTA 61.134 63.158 23.89 0.00 0.00 2.59
2268 5534 1.476007 GGCGGCTCATGAGGGTCTAT 61.476 60.000 23.89 0.00 0.00 1.98
2269 5535 0.037790 GCGGCTCATGAGGGTCTATC 60.038 60.000 23.89 5.34 0.00 2.08
2270 5536 1.332195 CGGCTCATGAGGGTCTATCA 58.668 55.000 23.89 0.00 0.00 2.15
2271 5537 1.898472 CGGCTCATGAGGGTCTATCAT 59.102 52.381 23.89 0.00 37.90 2.45
2275 5541 1.436600 CATGAGGGTCTATCATGCGC 58.563 55.000 0.00 0.00 45.35 6.09
2276 5542 1.001746 CATGAGGGTCTATCATGCGCT 59.998 52.381 9.73 0.00 45.35 5.92
2277 5543 1.123077 TGAGGGTCTATCATGCGCTT 58.877 50.000 9.73 0.00 0.00 4.68
2278 5544 1.202568 TGAGGGTCTATCATGCGCTTG 60.203 52.381 16.66 16.66 0.00 4.01
2279 5545 0.833287 AGGGTCTATCATGCGCTTGT 59.167 50.000 21.14 12.05 0.00 3.16
2280 5546 1.210478 AGGGTCTATCATGCGCTTGTT 59.790 47.619 21.14 15.97 0.00 2.83
2281 5547 2.017049 GGGTCTATCATGCGCTTGTTT 58.983 47.619 21.14 13.22 0.00 2.83
2282 5548 2.032178 GGGTCTATCATGCGCTTGTTTC 59.968 50.000 21.14 9.64 0.00 2.78
2283 5549 2.939103 GGTCTATCATGCGCTTGTTTCT 59.061 45.455 21.14 8.80 0.00 2.52
2284 5550 3.001736 GGTCTATCATGCGCTTGTTTCTC 59.998 47.826 21.14 11.09 0.00 2.87
2285 5551 3.618594 GTCTATCATGCGCTTGTTTCTCA 59.381 43.478 21.14 3.09 0.00 3.27
2286 5552 2.907910 ATCATGCGCTTGTTTCTCAC 57.092 45.000 21.14 0.00 0.00 3.51
2287 5553 1.882912 TCATGCGCTTGTTTCTCACT 58.117 45.000 21.14 0.00 0.00 3.41
2288 5554 1.532437 TCATGCGCTTGTTTCTCACTG 59.468 47.619 21.14 0.00 0.00 3.66
2289 5555 1.265095 CATGCGCTTGTTTCTCACTGT 59.735 47.619 14.73 0.00 0.00 3.55
2290 5556 2.232756 TGCGCTTGTTTCTCACTGTA 57.767 45.000 9.73 0.00 0.00 2.74
2291 5557 2.135139 TGCGCTTGTTTCTCACTGTAG 58.865 47.619 9.73 0.00 0.00 2.74
2292 5558 1.461127 GCGCTTGTTTCTCACTGTAGG 59.539 52.381 0.00 0.00 0.00 3.18
2293 5559 1.461127 CGCTTGTTTCTCACTGTAGGC 59.539 52.381 0.00 0.00 0.00 3.93
2294 5560 1.807142 GCTTGTTTCTCACTGTAGGCC 59.193 52.381 0.00 0.00 0.00 5.19
2295 5561 2.069273 CTTGTTTCTCACTGTAGGCCG 58.931 52.381 0.00 0.00 0.00 6.13
2296 5562 0.320421 TGTTTCTCACTGTAGGCCGC 60.320 55.000 0.00 0.00 0.00 6.53
2297 5563 0.037232 GTTTCTCACTGTAGGCCGCT 60.037 55.000 0.00 0.00 0.00 5.52
2298 5564 0.246635 TTTCTCACTGTAGGCCGCTC 59.753 55.000 0.00 0.00 0.00 5.03
2299 5565 1.605058 TTCTCACTGTAGGCCGCTCC 61.605 60.000 0.00 0.00 0.00 4.70
2301 5567 0.752009 CTCACTGTAGGCCGCTCCTA 60.752 60.000 0.00 0.00 45.41 2.94
2306 5572 4.295407 TAGGCCGCTCCTATGCTT 57.705 55.556 0.00 0.00 45.41 3.91
2307 5573 2.050269 TAGGCCGCTCCTATGCTTC 58.950 57.895 0.00 0.00 45.41 3.86
2308 5574 1.806461 TAGGCCGCTCCTATGCTTCG 61.806 60.000 0.00 0.00 45.41 3.79
2309 5575 2.663188 GCCGCTCCTATGCTTCGG 60.663 66.667 0.00 0.00 42.68 4.30
2310 5576 2.815308 CCGCTCCTATGCTTCGGT 59.185 61.111 0.00 0.00 35.75 4.69
2311 5577 1.144057 CCGCTCCTATGCTTCGGTT 59.856 57.895 0.00 0.00 35.75 4.44
2312 5578 0.462047 CCGCTCCTATGCTTCGGTTT 60.462 55.000 0.00 0.00 35.75 3.27
2313 5579 1.369625 CGCTCCTATGCTTCGGTTTT 58.630 50.000 0.00 0.00 0.00 2.43
2314 5580 1.327764 CGCTCCTATGCTTCGGTTTTC 59.672 52.381 0.00 0.00 0.00 2.29
2315 5581 2.633488 GCTCCTATGCTTCGGTTTTCT 58.367 47.619 0.00 0.00 0.00 2.52
2316 5582 3.010420 GCTCCTATGCTTCGGTTTTCTT 58.990 45.455 0.00 0.00 0.00 2.52
2317 5583 3.064134 GCTCCTATGCTTCGGTTTTCTTC 59.936 47.826 0.00 0.00 0.00 2.87
2318 5584 3.606687 TCCTATGCTTCGGTTTTCTTCC 58.393 45.455 0.00 0.00 0.00 3.46
2319 5585 3.263425 TCCTATGCTTCGGTTTTCTTCCT 59.737 43.478 0.00 0.00 0.00 3.36
2320 5586 4.010349 CCTATGCTTCGGTTTTCTTCCTT 58.990 43.478 0.00 0.00 0.00 3.36
2321 5587 4.459337 CCTATGCTTCGGTTTTCTTCCTTT 59.541 41.667 0.00 0.00 0.00 3.11
2322 5588 4.937201 ATGCTTCGGTTTTCTTCCTTTT 57.063 36.364 0.00 0.00 0.00 2.27
2323 5589 4.729227 TGCTTCGGTTTTCTTCCTTTTT 57.271 36.364 0.00 0.00 0.00 1.94
2358 5624 5.837586 TGTTTTCTTTGTTTGTTCACTGC 57.162 34.783 0.00 0.00 0.00 4.40
2359 5625 5.537188 TGTTTTCTTTGTTTGTTCACTGCT 58.463 33.333 0.00 0.00 0.00 4.24
2360 5626 5.988561 TGTTTTCTTTGTTTGTTCACTGCTT 59.011 32.000 0.00 0.00 0.00 3.91
2361 5627 6.481644 TGTTTTCTTTGTTTGTTCACTGCTTT 59.518 30.769 0.00 0.00 0.00 3.51
2362 5628 7.011857 TGTTTTCTTTGTTTGTTCACTGCTTTT 59.988 29.630 0.00 0.00 0.00 2.27
2363 5629 6.704512 TTCTTTGTTTGTTCACTGCTTTTC 57.295 33.333 0.00 0.00 0.00 2.29
2364 5630 6.024552 TCTTTGTTTGTTCACTGCTTTTCT 57.975 33.333 0.00 0.00 0.00 2.52
2365 5631 6.454795 TCTTTGTTTGTTCACTGCTTTTCTT 58.545 32.000 0.00 0.00 0.00 2.52
2366 5632 7.598278 TCTTTGTTTGTTCACTGCTTTTCTTA 58.402 30.769 0.00 0.00 0.00 2.10
2367 5633 7.754924 TCTTTGTTTGTTCACTGCTTTTCTTAG 59.245 33.333 0.00 0.00 0.00 2.18
2368 5634 5.890334 TGTTTGTTCACTGCTTTTCTTAGG 58.110 37.500 0.00 0.00 0.00 2.69
2369 5635 5.417580 TGTTTGTTCACTGCTTTTCTTAGGT 59.582 36.000 0.00 0.00 0.00 3.08
2370 5636 6.071616 TGTTTGTTCACTGCTTTTCTTAGGTT 60.072 34.615 0.00 0.00 0.00 3.50
2371 5637 6.524101 TTGTTCACTGCTTTTCTTAGGTTT 57.476 33.333 0.00 0.00 0.00 3.27
2372 5638 6.524101 TGTTCACTGCTTTTCTTAGGTTTT 57.476 33.333 0.00 0.00 0.00 2.43
2373 5639 6.930731 TGTTCACTGCTTTTCTTAGGTTTTT 58.069 32.000 0.00 0.00 0.00 1.94
2374 5640 7.033185 TGTTCACTGCTTTTCTTAGGTTTTTC 58.967 34.615 0.00 0.00 0.00 2.29
2375 5641 7.093945 TGTTCACTGCTTTTCTTAGGTTTTTCT 60.094 33.333 0.00 0.00 0.00 2.52
2376 5642 7.404671 TCACTGCTTTTCTTAGGTTTTTCTT 57.595 32.000 0.00 0.00 0.00 2.52
2377 5643 7.836842 TCACTGCTTTTCTTAGGTTTTTCTTT 58.163 30.769 0.00 0.00 0.00 2.52
2378 5644 8.311109 TCACTGCTTTTCTTAGGTTTTTCTTTT 58.689 29.630 0.00 0.00 0.00 2.27
2379 5645 8.935844 CACTGCTTTTCTTAGGTTTTTCTTTTT 58.064 29.630 0.00 0.00 0.00 1.94
2401 5667 5.793030 TTTCCATCCATTTTTACAACGGT 57.207 34.783 0.00 0.00 0.00 4.83
2402 5668 5.793030 TTCCATCCATTTTTACAACGGTT 57.207 34.783 0.00 0.00 0.00 4.44
2403 5669 5.793030 TCCATCCATTTTTACAACGGTTT 57.207 34.783 0.00 0.00 0.00 3.27
2404 5670 6.163135 TCCATCCATTTTTACAACGGTTTT 57.837 33.333 0.00 0.00 0.00 2.43
2405 5671 6.217294 TCCATCCATTTTTACAACGGTTTTC 58.783 36.000 0.00 0.00 0.00 2.29
2406 5672 6.041069 TCCATCCATTTTTACAACGGTTTTCT 59.959 34.615 0.00 0.00 0.00 2.52
2407 5673 6.704050 CCATCCATTTTTACAACGGTTTTCTT 59.296 34.615 0.00 0.00 0.00 2.52
2408 5674 7.095816 CCATCCATTTTTACAACGGTTTTCTTC 60.096 37.037 0.00 0.00 0.00 2.87
2409 5675 6.864342 TCCATTTTTACAACGGTTTTCTTCA 58.136 32.000 0.00 0.00 0.00 3.02
2410 5676 7.321153 TCCATTTTTACAACGGTTTTCTTCAA 58.679 30.769 0.00 0.00 0.00 2.69
2411 5677 7.817962 TCCATTTTTACAACGGTTTTCTTCAAA 59.182 29.630 0.00 0.00 0.00 2.69
2412 5678 8.443937 CCATTTTTACAACGGTTTTCTTCAAAA 58.556 29.630 0.00 0.00 0.00 2.44
2413 5679 9.813080 CATTTTTACAACGGTTTTCTTCAAAAA 57.187 25.926 0.00 0.00 33.17 1.94
2449 5715 9.768662 TTCTTCGTTGTACTAATAGTTTTTCCT 57.231 29.630 0.00 0.00 0.00 3.36
2450 5716 9.768662 TCTTCGTTGTACTAATAGTTTTTCCTT 57.231 29.630 0.00 0.00 0.00 3.36
2451 5717 9.807386 CTTCGTTGTACTAATAGTTTTTCCTTG 57.193 33.333 0.00 0.00 0.00 3.61
2452 5718 8.314143 TCGTTGTACTAATAGTTTTTCCTTGG 57.686 34.615 0.00 0.00 0.00 3.61
2453 5719 7.933033 TCGTTGTACTAATAGTTTTTCCTTGGT 59.067 33.333 0.00 0.00 0.00 3.67
2454 5720 8.562052 CGTTGTACTAATAGTTTTTCCTTGGTT 58.438 33.333 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.498841 CCAGGACGGAGATAGTACATCCT 60.499 52.174 0.00 0.00 36.56 3.24
32 33 2.820787 CCAGGACGGAGATAGTACATCC 59.179 54.545 0.00 0.00 36.56 3.51
34 35 3.596940 ACCAGGACGGAGATAGTACAT 57.403 47.619 0.00 0.00 38.63 2.29
35 36 3.377253 AACCAGGACGGAGATAGTACA 57.623 47.619 0.00 0.00 38.63 2.90
36 37 6.214399 CAATAAACCAGGACGGAGATAGTAC 58.786 44.000 0.00 0.00 38.63 2.73
37 38 5.303589 CCAATAAACCAGGACGGAGATAGTA 59.696 44.000 0.00 0.00 38.63 1.82
38 39 4.101119 CCAATAAACCAGGACGGAGATAGT 59.899 45.833 0.00 0.00 38.63 2.12
39 40 4.101119 ACCAATAAACCAGGACGGAGATAG 59.899 45.833 0.00 0.00 38.63 2.08
40 41 4.035112 ACCAATAAACCAGGACGGAGATA 58.965 43.478 0.00 0.00 38.63 1.98
41 42 2.844348 ACCAATAAACCAGGACGGAGAT 59.156 45.455 0.00 0.00 38.63 2.75
42 43 2.235402 GACCAATAAACCAGGACGGAGA 59.765 50.000 0.00 0.00 38.63 3.71
43 44 2.629051 GACCAATAAACCAGGACGGAG 58.371 52.381 0.00 0.00 38.63 4.63
44 45 1.279846 GGACCAATAAACCAGGACGGA 59.720 52.381 0.00 0.00 38.63 4.69
45 46 1.680860 GGGACCAATAAACCAGGACGG 60.681 57.143 0.00 0.00 42.50 4.79
46 47 1.746470 GGGACCAATAAACCAGGACG 58.254 55.000 0.00 0.00 0.00 4.79
61 62 5.523438 TTGACACAAAATACAAAGGGGAC 57.477 39.130 0.00 0.00 0.00 4.46
62 63 6.739331 ATTTGACACAAAATACAAAGGGGA 57.261 33.333 0.00 0.00 36.07 4.81
63 64 7.800155 AAATTTGACACAAAATACAAAGGGG 57.200 32.000 0.00 0.00 36.07 4.79
64 65 8.887717 TCAAAATTTGACACAAAATACAAAGGG 58.112 29.630 4.03 0.00 36.07 3.95
118 119 8.933807 CCAACAATATAATTTTTGTGACATGCA 58.066 29.630 0.00 0.00 36.26 3.96
119 120 9.149225 TCCAACAATATAATTTTTGTGACATGC 57.851 29.630 0.00 0.00 36.26 4.06
204 205 9.249053 TGCCAAATTTGACCATAGATTTAACTA 57.751 29.630 19.86 0.00 0.00 2.24
205 206 8.034804 GTGCCAAATTTGACCATAGATTTAACT 58.965 33.333 19.86 0.00 0.00 2.24
206 207 7.816995 TGTGCCAAATTTGACCATAGATTTAAC 59.183 33.333 19.86 0.00 0.00 2.01
207 208 7.901029 TGTGCCAAATTTGACCATAGATTTAA 58.099 30.769 19.86 0.00 0.00 1.52
208 209 7.473735 TGTGCCAAATTTGACCATAGATTTA 57.526 32.000 19.86 0.00 0.00 1.40
209 210 6.357579 TGTGCCAAATTTGACCATAGATTT 57.642 33.333 19.86 0.00 0.00 2.17
210 211 5.999205 TGTGCCAAATTTGACCATAGATT 57.001 34.783 19.86 0.00 0.00 2.40
211 212 5.999205 TTGTGCCAAATTTGACCATAGAT 57.001 34.783 19.86 0.00 0.00 1.98
212 213 5.798125 TTTGTGCCAAATTTGACCATAGA 57.202 34.783 19.86 7.11 0.00 1.98
213 214 7.201427 CGTATTTTGTGCCAAATTTGACCATAG 60.201 37.037 19.86 2.75 0.00 2.23
214 215 6.587990 CGTATTTTGTGCCAAATTTGACCATA 59.412 34.615 19.86 11.09 0.00 2.74
215 216 5.407995 CGTATTTTGTGCCAAATTTGACCAT 59.592 36.000 19.86 5.91 0.00 3.55
216 217 4.747108 CGTATTTTGTGCCAAATTTGACCA 59.253 37.500 19.86 12.69 0.00 4.02
217 218 4.985409 TCGTATTTTGTGCCAAATTTGACC 59.015 37.500 19.86 10.31 0.00 4.02
218 219 6.145371 ACATCGTATTTTGTGCCAAATTTGAC 59.855 34.615 19.86 8.78 0.00 3.18
219 220 6.145209 CACATCGTATTTTGTGCCAAATTTGA 59.855 34.615 19.86 0.00 37.08 2.69
220 221 6.298103 CACATCGTATTTTGTGCCAAATTTG 58.702 36.000 11.40 11.40 37.08 2.32
221 222 5.407995 CCACATCGTATTTTGTGCCAAATTT 59.592 36.000 1.89 0.00 41.47 1.82
222 223 4.928615 CCACATCGTATTTTGTGCCAAATT 59.071 37.500 1.89 2.10 41.47 1.82
223 224 4.493547 CCACATCGTATTTTGTGCCAAAT 58.506 39.130 1.89 0.00 41.47 2.32
224 225 3.305676 CCCACATCGTATTTTGTGCCAAA 60.306 43.478 0.00 0.00 41.47 3.28
225 226 2.230025 CCCACATCGTATTTTGTGCCAA 59.770 45.455 0.00 0.00 41.47 4.52
226 227 1.815613 CCCACATCGTATTTTGTGCCA 59.184 47.619 0.00 0.00 41.47 4.92
227 228 1.469079 GCCCACATCGTATTTTGTGCC 60.469 52.381 0.00 0.00 41.47 5.01
228 229 1.469079 GGCCCACATCGTATTTTGTGC 60.469 52.381 0.00 0.00 41.47 4.57
229 230 1.815613 TGGCCCACATCGTATTTTGTG 59.184 47.619 0.00 0.00 42.25 3.33
230 231 2.208132 TGGCCCACATCGTATTTTGT 57.792 45.000 0.00 0.00 0.00 2.83
231 232 3.799281 ATTGGCCCACATCGTATTTTG 57.201 42.857 0.00 0.00 0.00 2.44
232 233 5.394773 GGTTTATTGGCCCACATCGTATTTT 60.395 40.000 0.00 0.00 0.00 1.82
233 234 4.098807 GGTTTATTGGCCCACATCGTATTT 59.901 41.667 0.00 0.00 0.00 1.40
234 235 3.634910 GGTTTATTGGCCCACATCGTATT 59.365 43.478 0.00 0.00 0.00 1.89
235 236 3.219281 GGTTTATTGGCCCACATCGTAT 58.781 45.455 0.00 0.00 0.00 3.06
236 237 2.026169 TGGTTTATTGGCCCACATCGTA 60.026 45.455 0.00 0.00 0.00 3.43
237 238 1.272203 TGGTTTATTGGCCCACATCGT 60.272 47.619 0.00 0.00 0.00 3.73
238 239 1.405105 CTGGTTTATTGGCCCACATCG 59.595 52.381 0.00 0.00 0.00 3.84
239 240 2.733956 TCTGGTTTATTGGCCCACATC 58.266 47.619 0.00 0.00 0.00 3.06
240 241 2.831526 GTTCTGGTTTATTGGCCCACAT 59.168 45.455 0.00 0.00 0.00 3.21
241 242 2.158385 AGTTCTGGTTTATTGGCCCACA 60.158 45.455 0.00 0.00 0.00 4.17
242 243 2.231235 CAGTTCTGGTTTATTGGCCCAC 59.769 50.000 0.00 0.00 0.00 4.61
243 244 2.109128 TCAGTTCTGGTTTATTGGCCCA 59.891 45.455 0.00 0.00 0.00 5.36
244 245 2.802719 TCAGTTCTGGTTTATTGGCCC 58.197 47.619 0.00 0.00 0.00 5.80
245 246 3.763897 ACATCAGTTCTGGTTTATTGGCC 59.236 43.478 0.00 0.00 0.00 5.36
246 247 5.648092 ACTACATCAGTTCTGGTTTATTGGC 59.352 40.000 0.00 0.00 31.59 4.52
247 248 8.964476 ATACTACATCAGTTCTGGTTTATTGG 57.036 34.615 0.00 0.00 38.80 3.16
248 249 9.046296 GGATACTACATCAGTTCTGGTTTATTG 57.954 37.037 0.00 0.00 38.80 1.90
274 275 0.040204 AGTTGGCCCAATCCTCCAAG 59.960 55.000 0.00 0.00 40.19 3.61
300 301 4.321750 CCAACGTTCACCTTTAGCTAGAGA 60.322 45.833 12.74 0.00 0.00 3.10
301 302 3.927142 CCAACGTTCACCTTTAGCTAGAG 59.073 47.826 0.00 4.28 0.00 2.43
322 323 0.899717 ATGGCCATTGGTGTGTGACC 60.900 55.000 14.09 0.00 46.37 4.02
334 335 3.508845 ACGCTTTTATCCTATGGCCAT 57.491 42.857 24.45 24.45 0.00 4.40
342 343 2.028385 AGGACGTCAACGCTTTTATCCT 60.028 45.455 18.91 3.57 44.43 3.24
378 379 0.179000 CCGTCCCAGATTTCCCAGAG 59.821 60.000 0.00 0.00 0.00 3.35
379 380 1.271840 CCCGTCCCAGATTTCCCAGA 61.272 60.000 0.00 0.00 0.00 3.86
393 394 1.017387 GTCCATGCATTTCTCCCGTC 58.983 55.000 0.00 0.00 0.00 4.79
433 446 2.613595 TGGCAATAATAGTTGAGCGCAG 59.386 45.455 11.47 0.00 0.00 5.18
437 450 6.677781 TTACAGTGGCAATAATAGTTGAGC 57.322 37.500 0.00 0.00 0.00 4.26
468 481 1.674962 GAATGCTCCACATGAAGCCTC 59.325 52.381 0.00 1.95 39.60 4.70
469 482 1.684248 GGAATGCTCCACATGAAGCCT 60.684 52.381 0.00 0.00 41.96 4.58
488 501 4.191544 TGATCTCAAATACTTTGCTCGGG 58.808 43.478 0.00 0.00 40.43 5.14
492 505 8.798859 ACATAACTGATCTCAAATACTTTGCT 57.201 30.769 0.00 0.00 40.43 3.91
511 524 7.434013 CACAAACCACTACTTTTCCAACATAAC 59.566 37.037 0.00 0.00 0.00 1.89
513 526 6.603997 ACACAAACCACTACTTTTCCAACATA 59.396 34.615 0.00 0.00 0.00 2.29
520 533 7.646446 ACAAAAACACAAACCACTACTTTTC 57.354 32.000 0.00 0.00 0.00 2.29
523 536 7.599621 GGTTAACAAAAACACAAACCACTACTT 59.400 33.333 8.10 0.00 37.05 2.24
532 545 4.576879 GGTGGGGTTAACAAAAACACAAA 58.423 39.130 8.10 0.00 34.29 2.83
535 548 2.481622 CCGGTGGGGTTAACAAAAACAC 60.482 50.000 8.10 8.10 31.69 3.32
561 574 5.977129 GGATTTTAGCAATATTCAACACCCG 59.023 40.000 0.00 0.00 0.00 5.28
583 596 9.182214 CTTCATTTCATTGATTAAGAAGAGGGA 57.818 33.333 10.61 0.00 34.66 4.20
641 654 0.668535 ACAGAGGCAAAAACTTCGCC 59.331 50.000 0.00 0.00 46.62 5.54
665 678 0.780002 GCTCTCACGCGTCGTTTTAA 59.220 50.000 9.86 0.00 38.32 1.52
701 714 4.161001 CAGCTATCTTGAAAAGCCCCAAAT 59.839 41.667 0.00 0.00 45.70 2.32
735 748 8.312564 TGCTTCAAATTCCATTTTCATGTGATA 58.687 29.630 0.00 0.00 0.00 2.15
737 750 6.424509 GTGCTTCAAATTCCATTTTCATGTGA 59.575 34.615 0.00 0.00 0.00 3.58
739 752 5.702209 GGTGCTTCAAATTCCATTTTCATGT 59.298 36.000 0.00 0.00 0.00 3.21
756 769 3.360758 CGTTGCTTAAATTTCGGTGCTTC 59.639 43.478 0.00 0.00 0.00 3.86
811 1292 3.367395 GCCTTTTTATGAGTTGAGGTGGC 60.367 47.826 0.00 0.00 0.00 5.01
952 1441 1.070786 GCGGAGTGTCCCAAGTTCA 59.929 57.895 0.00 0.00 31.13 3.18
953 1442 0.321653 ATGCGGAGTGTCCCAAGTTC 60.322 55.000 0.00 0.00 31.13 3.01
969 1458 5.411669 ACCTACTAGTAGCACAAACAAATGC 59.588 40.000 22.39 0.00 42.39 3.56
1189 1678 2.164624 CCCAGACTAGGTTGAAGACGAG 59.835 54.545 0.00 0.00 0.00 4.18
1218 1707 4.057428 GCTGAGACGACGGCCACT 62.057 66.667 2.24 0.00 36.30 4.00
1479 4718 3.701532 AAATTCGGCGAGTGACAAAAA 57.298 38.095 10.46 0.00 0.00 1.94
1536 4777 7.301868 ACAATATGAATATTTCGCCCCAAAT 57.698 32.000 0.00 0.00 30.91 2.32
1543 4784 7.123190 TCACGTGAACAATATGAATATTTCGC 58.877 34.615 17.62 0.00 30.91 4.70
1559 4800 5.622770 ACCTCCATAAATTTCACGTGAAC 57.377 39.130 29.74 0.00 33.13 3.18
1583 4824 5.460748 TGTCTGAAACACACTATAACACGTG 59.539 40.000 15.48 15.48 37.18 4.49
1584 4825 5.593968 TGTCTGAAACACACTATAACACGT 58.406 37.500 0.00 0.00 31.20 4.49
1585 4826 6.706055 ATGTCTGAAACACACTATAACACG 57.294 37.500 0.00 0.00 41.75 4.49
1586 4827 8.342634 ACAAATGTCTGAAACACACTATAACAC 58.657 33.333 0.00 0.00 41.75 3.32
1588 4829 8.556194 TCACAAATGTCTGAAACACACTATAAC 58.444 33.333 0.00 0.00 41.75 1.89
1590 4831 8.846943 ATCACAAATGTCTGAAACACACTATA 57.153 30.769 0.00 0.00 41.75 1.31
1591 4832 7.360353 CGATCACAAATGTCTGAAACACACTAT 60.360 37.037 0.00 0.00 41.75 2.12
1592 4833 6.073819 CGATCACAAATGTCTGAAACACACTA 60.074 38.462 0.00 0.00 41.75 2.74
1593 4834 5.277490 CGATCACAAATGTCTGAAACACACT 60.277 40.000 0.00 0.00 41.75 3.55
1608 4870 5.106869 CCGGAAACTATGAAACGATCACAAA 60.107 40.000 0.00 0.00 41.93 2.83
1637 4899 6.849811 CGTACTATAACAGATTACGTGTCAGG 59.150 42.308 0.00 0.00 32.71 3.86
1655 4917 6.321690 AGGAACTAACTTGCAGATCGTACTAT 59.678 38.462 0.00 0.00 36.02 2.12
1796 5061 3.547746 ACAGTCTAGCCGTTTCCAAAAA 58.452 40.909 0.00 0.00 0.00 1.94
1828 5093 5.380043 AGTATCTCCCGAAATGCATGATTT 58.620 37.500 0.00 0.00 36.94 2.17
1895 5161 9.341899 GCGAACATTTCACAGTTATAAAGATTT 57.658 29.630 0.00 0.00 0.00 2.17
1896 5162 8.730680 AGCGAACATTTCACAGTTATAAAGATT 58.269 29.630 0.00 0.00 0.00 2.40
1897 5163 8.268850 AGCGAACATTTCACAGTTATAAAGAT 57.731 30.769 0.00 0.00 0.00 2.40
1898 5164 7.667043 AGCGAACATTTCACAGTTATAAAGA 57.333 32.000 0.00 0.00 0.00 2.52
1899 5165 9.988350 ATAAGCGAACATTTCACAGTTATAAAG 57.012 29.630 0.00 0.00 0.00 1.85
1902 5168 9.982291 GAAATAAGCGAACATTTCACAGTTATA 57.018 29.630 9.72 0.00 39.74 0.98
1903 5169 8.730680 AGAAATAAGCGAACATTTCACAGTTAT 58.269 29.630 14.48 0.00 41.53 1.89
1904 5170 8.094798 AGAAATAAGCGAACATTTCACAGTTA 57.905 30.769 14.48 0.00 41.53 2.24
1905 5171 6.970484 AGAAATAAGCGAACATTTCACAGTT 58.030 32.000 14.48 0.00 41.53 3.16
1906 5172 6.560253 AGAAATAAGCGAACATTTCACAGT 57.440 33.333 14.48 0.00 41.53 3.55
1907 5173 8.948853 TTAAGAAATAAGCGAACATTTCACAG 57.051 30.769 14.48 0.00 41.53 3.66
1914 5180 9.337396 TGGACATATTAAGAAATAAGCGAACAT 57.663 29.630 0.00 0.00 31.44 2.71
1915 5181 8.725405 TGGACATATTAAGAAATAAGCGAACA 57.275 30.769 0.00 0.00 31.44 3.18
1916 5182 9.042008 TCTGGACATATTAAGAAATAAGCGAAC 57.958 33.333 0.00 0.00 31.44 3.95
1917 5183 9.042008 GTCTGGACATATTAAGAAATAAGCGAA 57.958 33.333 0.00 0.00 31.44 4.70
1918 5184 8.201464 TGTCTGGACATATTAAGAAATAAGCGA 58.799 33.333 0.00 0.00 36.21 4.93
1919 5185 8.365399 TGTCTGGACATATTAAGAAATAAGCG 57.635 34.615 0.00 0.00 36.21 4.68
1949 5215 9.656040 ACTTTTAAAAATACCCGAACACTTTTT 57.344 25.926 1.66 0.00 34.45 1.94
1953 5219 9.902196 CAATACTTTTAAAAATACCCGAACACT 57.098 29.630 1.66 0.00 0.00 3.55
1954 5220 9.896263 TCAATACTTTTAAAAATACCCGAACAC 57.104 29.630 1.66 0.00 0.00 3.32
1955 5221 9.896263 GTCAATACTTTTAAAAATACCCGAACA 57.104 29.630 1.66 0.00 0.00 3.18
1956 5222 9.896263 TGTCAATACTTTTAAAAATACCCGAAC 57.104 29.630 1.66 0.00 0.00 3.95
1957 5223 9.896263 GTGTCAATACTTTTAAAAATACCCGAA 57.104 29.630 1.66 0.00 0.00 4.30
1958 5224 9.064706 TGTGTCAATACTTTTAAAAATACCCGA 57.935 29.630 1.66 0.00 0.00 5.14
1959 5225 9.849166 ATGTGTCAATACTTTTAAAAATACCCG 57.151 29.630 1.66 0.00 0.00 5.28
1993 5259 9.829507 TCCACACTTTTTAATTTGATGAACATT 57.170 25.926 0.00 0.00 0.00 2.71
1994 5260 9.260002 GTCCACACTTTTTAATTTGATGAACAT 57.740 29.630 0.00 0.00 0.00 2.71
1995 5261 8.253810 TGTCCACACTTTTTAATTTGATGAACA 58.746 29.630 0.00 0.00 0.00 3.18
1996 5262 8.641499 TGTCCACACTTTTTAATTTGATGAAC 57.359 30.769 0.00 0.00 0.00 3.18
1997 5263 9.658799 TTTGTCCACACTTTTTAATTTGATGAA 57.341 25.926 0.00 0.00 0.00 2.57
1998 5264 9.658799 TTTTGTCCACACTTTTTAATTTGATGA 57.341 25.926 0.00 0.00 0.00 2.92
2004 5270 9.442047 TGTGAATTTTGTCCACACTTTTTAATT 57.558 25.926 0.00 0.00 36.07 1.40
2005 5271 9.442047 TTGTGAATTTTGTCCACACTTTTTAAT 57.558 25.926 0.00 0.00 40.10 1.40
2006 5272 8.833231 TTGTGAATTTTGTCCACACTTTTTAA 57.167 26.923 0.00 0.00 40.10 1.52
2007 5273 8.833231 TTTGTGAATTTTGTCCACACTTTTTA 57.167 26.923 0.00 0.00 40.10 1.52
2008 5274 7.094848 CCTTTGTGAATTTTGTCCACACTTTTT 60.095 33.333 0.00 0.00 40.10 1.94
2009 5275 6.371271 CCTTTGTGAATTTTGTCCACACTTTT 59.629 34.615 0.00 0.00 40.10 2.27
2010 5276 5.874261 CCTTTGTGAATTTTGTCCACACTTT 59.126 36.000 0.00 0.00 40.10 2.66
2011 5277 5.186797 TCCTTTGTGAATTTTGTCCACACTT 59.813 36.000 0.00 0.00 40.10 3.16
2012 5278 4.709397 TCCTTTGTGAATTTTGTCCACACT 59.291 37.500 0.00 0.00 40.10 3.55
2013 5279 5.004922 TCCTTTGTGAATTTTGTCCACAC 57.995 39.130 0.00 0.00 40.10 3.82
2014 5280 5.667539 TTCCTTTGTGAATTTTGTCCACA 57.332 34.783 0.00 0.00 38.83 4.17
2015 5281 6.976636 TTTTCCTTTGTGAATTTTGTCCAC 57.023 33.333 0.00 0.00 0.00 4.02
2016 5282 9.672673 TTATTTTTCCTTTGTGAATTTTGTCCA 57.327 25.926 0.00 0.00 0.00 4.02
2125 5391 9.952030 TTCCCTTTTTGTTCATTTCTAGTTTTT 57.048 25.926 0.00 0.00 0.00 1.94
2126 5392 9.952030 TTTCCCTTTTTGTTCATTTCTAGTTTT 57.048 25.926 0.00 0.00 0.00 2.43
2127 5393 9.952030 TTTTCCCTTTTTGTTCATTTCTAGTTT 57.048 25.926 0.00 0.00 0.00 2.66
2128 5394 9.599866 CTTTTCCCTTTTTGTTCATTTCTAGTT 57.400 29.630 0.00 0.00 0.00 2.24
2129 5395 8.977412 TCTTTTCCCTTTTTGTTCATTTCTAGT 58.023 29.630 0.00 0.00 0.00 2.57
2130 5396 9.249457 GTCTTTTCCCTTTTTGTTCATTTCTAG 57.751 33.333 0.00 0.00 0.00 2.43
2131 5397 8.201464 GGTCTTTTCCCTTTTTGTTCATTTCTA 58.799 33.333 0.00 0.00 0.00 2.10
2132 5398 7.047891 GGTCTTTTCCCTTTTTGTTCATTTCT 58.952 34.615 0.00 0.00 0.00 2.52
2133 5399 6.260050 GGGTCTTTTCCCTTTTTGTTCATTTC 59.740 38.462 0.00 0.00 43.85 2.17
2134 5400 6.119536 GGGTCTTTTCCCTTTTTGTTCATTT 58.880 36.000 0.00 0.00 43.85 2.32
2135 5401 5.680619 GGGTCTTTTCCCTTTTTGTTCATT 58.319 37.500 0.00 0.00 43.85 2.57
2136 5402 5.290493 GGGTCTTTTCCCTTTTTGTTCAT 57.710 39.130 0.00 0.00 43.85 2.57
2137 5403 4.746535 GGGTCTTTTCCCTTTTTGTTCA 57.253 40.909 0.00 0.00 43.85 3.18
2148 5414 6.063496 ACTAGGTATTTCTGGGTCTTTTCC 57.937 41.667 0.00 0.00 0.00 3.13
2149 5415 6.114089 GGACTAGGTATTTCTGGGTCTTTTC 58.886 44.000 0.00 0.00 0.00 2.29
2150 5416 5.338137 CGGACTAGGTATTTCTGGGTCTTTT 60.338 44.000 0.00 0.00 0.00 2.27
2151 5417 4.161754 CGGACTAGGTATTTCTGGGTCTTT 59.838 45.833 0.00 0.00 0.00 2.52
2152 5418 3.705072 CGGACTAGGTATTTCTGGGTCTT 59.295 47.826 0.00 0.00 0.00 3.01
2153 5419 3.297736 CGGACTAGGTATTTCTGGGTCT 58.702 50.000 0.00 0.00 0.00 3.85
2154 5420 2.364647 CCGGACTAGGTATTTCTGGGTC 59.635 54.545 0.00 0.00 32.78 4.46
2155 5421 2.395619 CCGGACTAGGTATTTCTGGGT 58.604 52.381 0.00 0.00 32.78 4.51
2156 5422 1.070289 GCCGGACTAGGTATTTCTGGG 59.930 57.143 5.05 0.00 36.43 4.45
2157 5423 1.269621 CGCCGGACTAGGTATTTCTGG 60.270 57.143 5.05 0.00 38.64 3.86
2158 5424 1.269621 CCGCCGGACTAGGTATTTCTG 60.270 57.143 5.05 0.00 0.00 3.02
2159 5425 1.038280 CCGCCGGACTAGGTATTTCT 58.962 55.000 5.05 0.00 0.00 2.52
2160 5426 0.599466 GCCGCCGGACTAGGTATTTC 60.599 60.000 7.68 0.00 0.00 2.17
2161 5427 1.332144 TGCCGCCGGACTAGGTATTT 61.332 55.000 7.68 0.00 0.00 1.40
2162 5428 1.745320 CTGCCGCCGGACTAGGTATT 61.745 60.000 7.68 0.00 0.00 1.89
2163 5429 2.123597 TGCCGCCGGACTAGGTAT 60.124 61.111 7.68 0.00 0.00 2.73
2164 5430 2.269520 TACTGCCGCCGGACTAGGTA 62.270 60.000 7.68 0.37 0.00 3.08
2165 5431 3.650298 TACTGCCGCCGGACTAGGT 62.650 63.158 7.68 0.00 0.00 3.08
2166 5432 1.952102 TTTACTGCCGCCGGACTAGG 61.952 60.000 7.68 3.04 0.00 3.02
2167 5433 0.104304 ATTTACTGCCGCCGGACTAG 59.896 55.000 7.68 3.88 0.00 2.57
2168 5434 0.538118 AATTTACTGCCGCCGGACTA 59.462 50.000 7.68 0.00 0.00 2.59
2169 5435 0.322187 AAATTTACTGCCGCCGGACT 60.322 50.000 7.68 0.00 0.00 3.85
2170 5436 0.524414 AAAATTTACTGCCGCCGGAC 59.476 50.000 7.68 0.00 0.00 4.79
2171 5437 1.249407 AAAAATTTACTGCCGCCGGA 58.751 45.000 7.68 0.00 0.00 5.14
2172 5438 3.804601 AAAAATTTACTGCCGCCGG 57.195 47.368 0.00 0.00 0.00 6.13
2188 5454 1.276705 GCCCCCGGATTTGCTTAAAAA 59.723 47.619 0.73 0.00 0.00 1.94
2189 5455 0.899019 GCCCCCGGATTTGCTTAAAA 59.101 50.000 0.73 0.00 0.00 1.52
2190 5456 0.251832 TGCCCCCGGATTTGCTTAAA 60.252 50.000 0.73 0.00 0.00 1.52
2191 5457 0.682855 CTGCCCCCGGATTTGCTTAA 60.683 55.000 0.73 0.00 0.00 1.85
2192 5458 1.077068 CTGCCCCCGGATTTGCTTA 60.077 57.895 0.73 0.00 0.00 3.09
2193 5459 2.362889 CTGCCCCCGGATTTGCTT 60.363 61.111 0.73 0.00 0.00 3.91
2196 5462 4.794648 TCGCTGCCCCCGGATTTG 62.795 66.667 0.73 0.00 0.00 2.32
2197 5463 2.854300 AATTCGCTGCCCCCGGATTT 62.854 55.000 0.73 0.00 30.07 2.17
2198 5464 3.358932 AATTCGCTGCCCCCGGATT 62.359 57.895 0.73 0.00 0.00 3.01
2199 5465 3.809013 AATTCGCTGCCCCCGGAT 61.809 61.111 0.73 0.00 0.00 4.18
2200 5466 4.794648 CAATTCGCTGCCCCCGGA 62.795 66.667 0.73 0.00 0.00 5.14
2202 5468 4.794648 TCCAATTCGCTGCCCCCG 62.795 66.667 0.00 0.00 0.00 5.73
2203 5469 3.140814 GTCCAATTCGCTGCCCCC 61.141 66.667 0.00 0.00 0.00 5.40
2204 5470 3.508840 CGTCCAATTCGCTGCCCC 61.509 66.667 0.00 0.00 0.00 5.80
2205 5471 2.435938 TCGTCCAATTCGCTGCCC 60.436 61.111 0.00 0.00 0.00 5.36
2206 5472 2.750888 GGTCGTCCAATTCGCTGCC 61.751 63.158 0.00 0.00 0.00 4.85
2207 5473 2.032634 TGGTCGTCCAATTCGCTGC 61.033 57.895 0.00 0.00 41.25 5.25
2208 5474 4.277239 TGGTCGTCCAATTCGCTG 57.723 55.556 0.00 0.00 41.25 5.18
2223 5489 0.390603 TTACGGTTGCGACCAGATGG 60.391 55.000 23.21 8.59 46.91 3.51
2224 5490 1.434555 TTTACGGTTGCGACCAGATG 58.565 50.000 23.21 8.97 46.91 2.90
2225 5491 2.073816 CTTTTACGGTTGCGACCAGAT 58.926 47.619 23.21 10.07 46.91 2.90
2226 5492 1.068895 TCTTTTACGGTTGCGACCAGA 59.931 47.619 23.21 14.20 46.91 3.86
2227 5493 1.459592 CTCTTTTACGGTTGCGACCAG 59.540 52.381 23.21 16.94 46.91 4.00
2228 5494 1.504359 CTCTTTTACGGTTGCGACCA 58.496 50.000 23.21 0.97 46.91 4.02
2229 5495 0.165295 GCTCTTTTACGGTTGCGACC 59.835 55.000 13.74 13.74 42.87 4.79
2230 5496 0.179258 CGCTCTTTTACGGTTGCGAC 60.179 55.000 0.00 0.00 45.15 5.19
2231 5497 1.286354 CCGCTCTTTTACGGTTGCGA 61.286 55.000 6.74 0.00 45.15 5.10
2232 5498 1.131826 CCGCTCTTTTACGGTTGCG 59.868 57.895 0.00 0.00 44.46 4.85
2238 5504 2.813908 AGCCGCCGCTCTTTTACG 60.814 61.111 0.00 0.00 43.95 3.18
2248 5514 4.899239 GACCCTCATGAGCCGCCG 62.899 72.222 17.76 3.06 0.00 6.46
2249 5515 1.476007 ATAGACCCTCATGAGCCGCC 61.476 60.000 17.76 5.94 0.00 6.13
2250 5516 0.037790 GATAGACCCTCATGAGCCGC 60.038 60.000 17.76 7.89 0.00 6.53
2251 5517 1.332195 TGATAGACCCTCATGAGCCG 58.668 55.000 17.76 11.43 0.00 5.52
2257 5523 1.346062 AGCGCATGATAGACCCTCAT 58.654 50.000 11.47 0.00 33.65 2.90
2258 5524 1.123077 AAGCGCATGATAGACCCTCA 58.877 50.000 11.47 0.00 0.00 3.86
2259 5525 1.202580 ACAAGCGCATGATAGACCCTC 60.203 52.381 20.91 0.00 0.00 4.30
2260 5526 0.833287 ACAAGCGCATGATAGACCCT 59.167 50.000 20.91 0.00 0.00 4.34
2261 5527 1.668419 AACAAGCGCATGATAGACCC 58.332 50.000 20.91 0.00 0.00 4.46
2262 5528 2.939103 AGAAACAAGCGCATGATAGACC 59.061 45.455 20.91 2.30 0.00 3.85
2263 5529 3.618594 TGAGAAACAAGCGCATGATAGAC 59.381 43.478 20.91 8.08 0.00 2.59
2264 5530 3.618594 GTGAGAAACAAGCGCATGATAGA 59.381 43.478 20.91 0.00 0.00 1.98
2265 5531 3.620374 AGTGAGAAACAAGCGCATGATAG 59.380 43.478 20.91 0.00 0.00 2.08
2266 5532 3.371898 CAGTGAGAAACAAGCGCATGATA 59.628 43.478 20.91 0.00 0.00 2.15
2267 5533 2.161012 CAGTGAGAAACAAGCGCATGAT 59.839 45.455 20.91 4.19 0.00 2.45
2268 5534 1.532437 CAGTGAGAAACAAGCGCATGA 59.468 47.619 20.91 0.00 0.00 3.07
2269 5535 1.265095 ACAGTGAGAAACAAGCGCATG 59.735 47.619 11.47 11.60 0.00 4.06
2270 5536 1.597742 ACAGTGAGAAACAAGCGCAT 58.402 45.000 11.47 0.00 0.00 4.73
2271 5537 2.135139 CTACAGTGAGAAACAAGCGCA 58.865 47.619 11.47 0.00 0.00 6.09
2272 5538 1.461127 CCTACAGTGAGAAACAAGCGC 59.539 52.381 0.00 0.00 0.00 5.92
2273 5539 1.461127 GCCTACAGTGAGAAACAAGCG 59.539 52.381 0.00 0.00 0.00 4.68
2274 5540 1.807142 GGCCTACAGTGAGAAACAAGC 59.193 52.381 0.00 0.00 0.00 4.01
2275 5541 2.069273 CGGCCTACAGTGAGAAACAAG 58.931 52.381 0.00 0.00 0.00 3.16
2276 5542 1.876416 GCGGCCTACAGTGAGAAACAA 60.876 52.381 0.00 0.00 0.00 2.83
2277 5543 0.320421 GCGGCCTACAGTGAGAAACA 60.320 55.000 0.00 0.00 0.00 2.83
2278 5544 0.037232 AGCGGCCTACAGTGAGAAAC 60.037 55.000 0.00 0.00 0.00 2.78
2279 5545 0.246635 GAGCGGCCTACAGTGAGAAA 59.753 55.000 0.00 0.00 0.00 2.52
2280 5546 1.605058 GGAGCGGCCTACAGTGAGAA 61.605 60.000 0.00 0.00 0.00 2.87
2281 5547 2.052690 GGAGCGGCCTACAGTGAGA 61.053 63.158 0.00 0.00 0.00 3.27
2282 5548 2.496817 GGAGCGGCCTACAGTGAG 59.503 66.667 0.00 0.00 0.00 3.51
2291 5557 2.663188 CGAAGCATAGGAGCGGCC 60.663 66.667 0.00 0.00 40.15 6.13
2292 5558 2.663188 CCGAAGCATAGGAGCGGC 60.663 66.667 0.00 0.00 40.15 6.53
2293 5559 0.462047 AAACCGAAGCATAGGAGCGG 60.462 55.000 0.00 0.00 46.83 5.52
2294 5560 1.327764 GAAAACCGAAGCATAGGAGCG 59.672 52.381 0.00 0.00 40.15 5.03
2295 5561 2.633488 AGAAAACCGAAGCATAGGAGC 58.367 47.619 0.00 0.00 0.00 4.70
2296 5562 3.623510 GGAAGAAAACCGAAGCATAGGAG 59.376 47.826 0.00 0.00 0.00 3.69
2297 5563 3.263425 AGGAAGAAAACCGAAGCATAGGA 59.737 43.478 0.00 0.00 0.00 2.94
2298 5564 3.610911 AGGAAGAAAACCGAAGCATAGG 58.389 45.455 0.00 0.00 0.00 2.57
2299 5565 5.629079 AAAGGAAGAAAACCGAAGCATAG 57.371 39.130 0.00 0.00 0.00 2.23
2300 5566 6.399639 AAAAAGGAAGAAAACCGAAGCATA 57.600 33.333 0.00 0.00 0.00 3.14
2301 5567 4.937201 AAAAGGAAGAAAACCGAAGCAT 57.063 36.364 0.00 0.00 0.00 3.79
2302 5568 4.729227 AAAAAGGAAGAAAACCGAAGCA 57.271 36.364 0.00 0.00 0.00 3.91
2332 5598 8.439286 GCAGTGAACAAACAAAGAAAACAAATA 58.561 29.630 0.00 0.00 0.00 1.40
2333 5599 7.173047 AGCAGTGAACAAACAAAGAAAACAAAT 59.827 29.630 0.00 0.00 0.00 2.32
2334 5600 6.481644 AGCAGTGAACAAACAAAGAAAACAAA 59.518 30.769 0.00 0.00 0.00 2.83
2335 5601 5.988561 AGCAGTGAACAAACAAAGAAAACAA 59.011 32.000 0.00 0.00 0.00 2.83
2336 5602 5.537188 AGCAGTGAACAAACAAAGAAAACA 58.463 33.333 0.00 0.00 0.00 2.83
2337 5603 6.466308 AAGCAGTGAACAAACAAAGAAAAC 57.534 33.333 0.00 0.00 0.00 2.43
2338 5604 7.440856 AGAAAAGCAGTGAACAAACAAAGAAAA 59.559 29.630 0.00 0.00 0.00 2.29
2339 5605 6.928492 AGAAAAGCAGTGAACAAACAAAGAAA 59.072 30.769 0.00 0.00 0.00 2.52
2340 5606 6.454795 AGAAAAGCAGTGAACAAACAAAGAA 58.545 32.000 0.00 0.00 0.00 2.52
2341 5607 6.024552 AGAAAAGCAGTGAACAAACAAAGA 57.975 33.333 0.00 0.00 0.00 2.52
2342 5608 6.710692 AAGAAAAGCAGTGAACAAACAAAG 57.289 33.333 0.00 0.00 0.00 2.77
2343 5609 6.811170 CCTAAGAAAAGCAGTGAACAAACAAA 59.189 34.615 0.00 0.00 0.00 2.83
2344 5610 6.071616 ACCTAAGAAAAGCAGTGAACAAACAA 60.072 34.615 0.00 0.00 0.00 2.83
2345 5611 5.417580 ACCTAAGAAAAGCAGTGAACAAACA 59.582 36.000 0.00 0.00 0.00 2.83
2346 5612 5.891451 ACCTAAGAAAAGCAGTGAACAAAC 58.109 37.500 0.00 0.00 0.00 2.93
2347 5613 6.524101 AACCTAAGAAAAGCAGTGAACAAA 57.476 33.333 0.00 0.00 0.00 2.83
2348 5614 6.524101 AAACCTAAGAAAAGCAGTGAACAA 57.476 33.333 0.00 0.00 0.00 2.83
2349 5615 6.524101 AAAACCTAAGAAAAGCAGTGAACA 57.476 33.333 0.00 0.00 0.00 3.18
2350 5616 7.258441 AGAAAAACCTAAGAAAAGCAGTGAAC 58.742 34.615 0.00 0.00 0.00 3.18
2351 5617 7.404671 AGAAAAACCTAAGAAAAGCAGTGAA 57.595 32.000 0.00 0.00 0.00 3.18
2352 5618 7.404671 AAGAAAAACCTAAGAAAAGCAGTGA 57.595 32.000 0.00 0.00 0.00 3.41
2353 5619 8.479313 AAAAGAAAAACCTAAGAAAAGCAGTG 57.521 30.769 0.00 0.00 0.00 3.66
2377 5643 6.583562 ACCGTTGTAAAAATGGATGGAAAAA 58.416 32.000 3.39 0.00 0.00 1.94
2378 5644 6.163135 ACCGTTGTAAAAATGGATGGAAAA 57.837 33.333 3.39 0.00 0.00 2.29
2379 5645 5.793030 ACCGTTGTAAAAATGGATGGAAA 57.207 34.783 3.39 0.00 0.00 3.13
2380 5646 5.793030 AACCGTTGTAAAAATGGATGGAA 57.207 34.783 3.39 0.00 0.00 3.53
2381 5647 5.793030 AAACCGTTGTAAAAATGGATGGA 57.207 34.783 3.39 0.00 0.00 3.41
2382 5648 6.220201 AGAAAACCGTTGTAAAAATGGATGG 58.780 36.000 3.39 0.00 0.00 3.51
2383 5649 7.436673 TGAAGAAAACCGTTGTAAAAATGGATG 59.563 33.333 3.39 0.00 0.00 3.51
2384 5650 7.493367 TGAAGAAAACCGTTGTAAAAATGGAT 58.507 30.769 3.39 0.00 0.00 3.41
2385 5651 6.864342 TGAAGAAAACCGTTGTAAAAATGGA 58.136 32.000 3.39 0.00 0.00 3.41
2386 5652 7.527084 TTGAAGAAAACCGTTGTAAAAATGG 57.473 32.000 0.00 0.00 0.00 3.16
2387 5653 9.813080 TTTTTGAAGAAAACCGTTGTAAAAATG 57.187 25.926 0.00 0.00 30.56 2.32
2423 5689 9.768662 AGGAAAAACTATTAGTACAACGAAGAA 57.231 29.630 0.00 0.00 0.00 2.52
2424 5690 9.768662 AAGGAAAAACTATTAGTACAACGAAGA 57.231 29.630 0.00 0.00 0.00 2.87
2425 5691 9.807386 CAAGGAAAAACTATTAGTACAACGAAG 57.193 33.333 0.00 0.00 0.00 3.79
2426 5692 8.776470 CCAAGGAAAAACTATTAGTACAACGAA 58.224 33.333 0.00 0.00 0.00 3.85
2427 5693 7.933033 ACCAAGGAAAAACTATTAGTACAACGA 59.067 33.333 0.00 0.00 0.00 3.85
2428 5694 8.091385 ACCAAGGAAAAACTATTAGTACAACG 57.909 34.615 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.