Multiple sequence alignment - TraesCS1D01G066300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G066300 chr1D 100.000 3500 0 0 1 3500 47884647 47881148 0.000000e+00 6464.0
1 TraesCS1D01G066300 chr1D 91.545 1786 77 17 887 2653 47936292 47934562 0.000000e+00 2394.0
2 TraesCS1D01G066300 chr1D 91.731 774 46 9 2648 3413 47934027 47933264 0.000000e+00 1059.0
3 TraesCS1D01G066300 chr1B 93.193 1895 92 17 1018 2888 67643895 67642014 0.000000e+00 2750.0
4 TraesCS1D01G066300 chr1B 87.109 543 27 9 2886 3419 67542569 67542061 3.030000e-160 575.0
5 TraesCS1D01G066300 chr1B 88.293 410 29 8 884 1285 67659632 67659234 1.140000e-129 473.0
6 TraesCS1D01G066300 chr1A 96.472 907 32 0 1613 2519 47814878 47813972 0.000000e+00 1498.0
7 TraesCS1D01G066300 chr1A 93.855 830 46 3 1 829 150884305 150883480 0.000000e+00 1245.0
8 TraesCS1D01G066300 chr1A 91.193 897 63 12 2564 3451 47813961 47813072 0.000000e+00 1205.0
9 TraesCS1D01G066300 chr1A 87.345 806 50 15 838 1617 47815915 47815136 0.000000e+00 876.0
10 TraesCS1D01G066300 chr5B 95.060 830 37 2 1 830 560389458 560388633 0.000000e+00 1303.0
11 TraesCS1D01G066300 chr5B 73.406 737 182 14 1498 2227 642142111 642141382 2.680000e-66 263.0
12 TraesCS1D01G066300 chr7D 94.431 826 44 2 1 826 33741309 33742132 0.000000e+00 1269.0
13 TraesCS1D01G066300 chr7D 95.369 799 29 4 1 796 572592759 572591966 0.000000e+00 1264.0
14 TraesCS1D01G066300 chr7D 95.244 799 32 4 1 796 587075789 587074994 0.000000e+00 1260.0
15 TraesCS1D01G066300 chr7A 95.785 783 29 2 1 782 733523202 733523981 0.000000e+00 1260.0
16 TraesCS1D01G066300 chr6A 94.975 796 34 4 1 796 62133595 62132806 0.000000e+00 1243.0
17 TraesCS1D01G066300 chr4D 93.637 833 49 2 1 832 498043391 498042562 0.000000e+00 1242.0
18 TraesCS1D01G066300 chr4A 92.866 841 55 3 1 839 590197825 590196988 0.000000e+00 1216.0
19 TraesCS1D01G066300 chr5A 72.552 725 177 21 1514 2227 639293066 639292353 2.120000e-52 217.0
20 TraesCS1D01G066300 chr2A 93.750 48 3 0 782 829 421912682 421912635 4.850000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G066300 chr1D 47881148 47884647 3499 True 6464.0 6464 100.000 1 3500 1 chr1D.!!$R1 3499
1 TraesCS1D01G066300 chr1D 47933264 47936292 3028 True 1726.5 2394 91.638 887 3413 2 chr1D.!!$R2 2526
2 TraesCS1D01G066300 chr1B 67642014 67643895 1881 True 2750.0 2750 93.193 1018 2888 1 chr1B.!!$R2 1870
3 TraesCS1D01G066300 chr1B 67542061 67542569 508 True 575.0 575 87.109 2886 3419 1 chr1B.!!$R1 533
4 TraesCS1D01G066300 chr1A 150883480 150884305 825 True 1245.0 1245 93.855 1 829 1 chr1A.!!$R1 828
5 TraesCS1D01G066300 chr1A 47813072 47815915 2843 True 1193.0 1498 91.670 838 3451 3 chr1A.!!$R2 2613
6 TraesCS1D01G066300 chr5B 560388633 560389458 825 True 1303.0 1303 95.060 1 830 1 chr5B.!!$R1 829
7 TraesCS1D01G066300 chr5B 642141382 642142111 729 True 263.0 263 73.406 1498 2227 1 chr5B.!!$R2 729
8 TraesCS1D01G066300 chr7D 33741309 33742132 823 False 1269.0 1269 94.431 1 826 1 chr7D.!!$F1 825
9 TraesCS1D01G066300 chr7D 572591966 572592759 793 True 1264.0 1264 95.369 1 796 1 chr7D.!!$R1 795
10 TraesCS1D01G066300 chr7D 587074994 587075789 795 True 1260.0 1260 95.244 1 796 1 chr7D.!!$R2 795
11 TraesCS1D01G066300 chr7A 733523202 733523981 779 False 1260.0 1260 95.785 1 782 1 chr7A.!!$F1 781
12 TraesCS1D01G066300 chr6A 62132806 62133595 789 True 1243.0 1243 94.975 1 796 1 chr6A.!!$R1 795
13 TraesCS1D01G066300 chr4D 498042562 498043391 829 True 1242.0 1242 93.637 1 832 1 chr4D.!!$R1 831
14 TraesCS1D01G066300 chr4A 590196988 590197825 837 True 1216.0 1216 92.866 1 839 1 chr4A.!!$R1 838
15 TraesCS1D01G066300 chr5A 639292353 639293066 713 True 217.0 217 72.552 1514 2227 1 chr5A.!!$R1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 954 0.451792 GCGCACGAGAAGCAGAAAAG 60.452 55.0 0.30 0.0 0.00 2.27 F
1060 1074 0.526662 GACGGTTCTGATCCTCGTGT 59.473 55.0 3.45 0.0 34.06 4.49 F
1344 1416 0.663568 AGAGTGAAAACGCCGTCGAG 60.664 55.0 0.00 0.0 39.41 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2320 0.106719 CCGGGCCACATGTTATCCTT 60.107 55.000 4.39 0.0 0.00 3.36 R
2313 2647 0.815095 TGATAGCCTCTTTCGTCGCA 59.185 50.000 0.00 0.0 0.00 5.10 R
2510 2865 1.527736 CAACCATGCATGTGTTGTTGC 59.472 47.619 31.76 0.0 35.81 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
299 304 7.066163 AGCGAACAATTGAGTTGAATGATGATA 59.934 33.333 13.59 0.00 40.37 2.15
357 362 0.770557 AGAAGCCCCACACCCAACTA 60.771 55.000 0.00 0.00 0.00 2.24
480 485 4.219288 AGCTATTGTGAAGGCAAGAAAAGG 59.781 41.667 0.00 0.00 0.00 3.11
491 496 2.494059 CAAGAAAAGGAGCCAACGAGA 58.506 47.619 0.00 0.00 0.00 4.04
511 516 4.617593 AGATGAGGAAAATGGCAAGGAAT 58.382 39.130 0.00 0.00 0.00 3.01
724 731 2.224523 TGCCCGTGAAGAAGTCTTGATT 60.225 45.455 0.00 0.00 36.11 2.57
756 763 2.619646 CCATGATTCGTGCAATGGATGA 59.380 45.455 6.98 0.00 0.00 2.92
768 775 0.839277 ATGGATGACGATGGCCTTGA 59.161 50.000 3.32 0.00 0.00 3.02
771 778 0.460284 GATGACGATGGCCTTGACGT 60.460 55.000 3.32 10.50 41.57 4.34
836 843 4.708386 CCACGGGCGGTTTAGGCA 62.708 66.667 0.00 0.00 38.57 4.75
864 871 1.165907 TGAACGACCTGCCAAAGCTG 61.166 55.000 0.00 0.00 40.80 4.24
869 876 0.875059 GACCTGCCAAAGCTGTGTAC 59.125 55.000 2.51 0.00 40.80 2.90
873 880 2.258013 GCCAAAGCTGTGTACGCCA 61.258 57.895 2.51 0.00 35.50 5.69
899 912 2.024588 ACAAGCAACGCAACGCAG 59.975 55.556 0.00 0.00 0.00 5.18
935 949 4.144681 GCAGCGCACGAGAAGCAG 62.145 66.667 11.47 0.00 0.00 4.24
940 954 0.451792 GCGCACGAGAAGCAGAAAAG 60.452 55.000 0.30 0.00 0.00 2.27
983 997 5.138276 TCTGTATACCAAAGGAGCTCGTAT 58.862 41.667 9.76 12.08 0.00 3.06
984 998 5.009710 TCTGTATACCAAAGGAGCTCGTATG 59.990 44.000 9.76 6.81 0.00 2.39
985 999 4.647853 TGTATACCAAAGGAGCTCGTATGT 59.352 41.667 9.76 9.55 0.00 2.29
986 1000 5.829391 TGTATACCAAAGGAGCTCGTATGTA 59.171 40.000 9.76 11.32 0.00 2.29
1044 1058 2.507102 CTGGTAGTGCTGGCGACG 60.507 66.667 0.00 0.00 0.00 5.12
1060 1074 0.526662 GACGGTTCTGATCCTCGTGT 59.473 55.000 3.45 0.00 34.06 4.49
1066 1080 3.678548 GGTTCTGATCCTCGTGTTGTTAC 59.321 47.826 0.00 0.00 0.00 2.50
1095 1109 3.142838 GTGCCGGCCATTGCTCAT 61.143 61.111 26.77 0.00 37.74 2.90
1144 1164 1.000060 GTAGACGTACCACCAGCAACA 60.000 52.381 0.00 0.00 0.00 3.33
1162 1185 3.244281 AACGTCCGCCCCAACCTAC 62.244 63.158 0.00 0.00 0.00 3.18
1287 1341 3.775654 CCTTCTCCCGCGCCTTCT 61.776 66.667 0.00 0.00 0.00 2.85
1297 1363 4.214327 CGCCTTCTCCCGAGCCTC 62.214 72.222 0.00 0.00 0.00 4.70
1302 1368 2.581726 CTTCTCCCGAGCCTCCTCCT 62.582 65.000 0.00 0.00 34.49 3.69
1343 1415 0.937699 CAGAGTGAAAACGCCGTCGA 60.938 55.000 0.00 0.00 39.41 4.20
1344 1416 0.663568 AGAGTGAAAACGCCGTCGAG 60.664 55.000 0.00 0.00 39.41 4.04
1345 1417 1.615107 GAGTGAAAACGCCGTCGAGG 61.615 60.000 0.00 0.00 44.97 4.63
1346 1418 1.952635 GTGAAAACGCCGTCGAGGT 60.953 57.895 4.18 0.00 43.70 3.85
1407 1479 1.537814 AACAGGACGATACACCGGCA 61.538 55.000 0.00 0.00 39.84 5.69
1486 1558 1.616187 CCAGGGAGAAGACGTACCTCA 60.616 57.143 11.72 0.00 0.00 3.86
1986 2320 1.342174 ACCGAAAACCTCTACGCTTCA 59.658 47.619 0.00 0.00 0.00 3.02
1995 2329 3.767673 ACCTCTACGCTTCAAGGATAACA 59.232 43.478 0.00 0.00 32.99 2.41
2035 2369 2.066393 AGCATCGGGAGCTTAGGCA 61.066 57.895 0.00 0.00 39.87 4.75
2061 2395 3.997400 CTCCGAGGCCCGAGTCTCA 62.997 68.421 14.30 0.00 45.59 3.27
2247 2581 4.815108 CCCGCCAACCCTAAGCCC 62.815 72.222 0.00 0.00 0.00 5.19
2313 2647 1.276622 AGAACATAAGGGGCACGAGT 58.723 50.000 0.00 0.00 0.00 4.18
2394 2728 1.508632 TGCAAGACGTGAAGCTTACC 58.491 50.000 0.00 0.00 0.00 2.85
2399 2733 2.673833 AGACGTGAAGCTTACCTTTCG 58.326 47.619 0.00 1.11 37.28 3.46
2425 2759 2.784356 GGGCACAAGCACAAGCACA 61.784 57.895 0.00 0.00 45.91 4.57
2502 2857 1.767681 GATCCCAAGACCTGCTGAGAT 59.232 52.381 0.00 0.00 0.00 2.75
2510 2865 4.199432 AGACCTGCTGAGATAACAACAG 57.801 45.455 0.00 0.00 34.84 3.16
2604 2959 8.859236 ATCTTGTGGATATATGGATTCAACAG 57.141 34.615 0.00 0.00 32.04 3.16
2692 3587 5.620206 TCTGAGAACTGAATTTGTAAGGCA 58.380 37.500 0.00 0.00 0.00 4.75
2695 3590 8.049117 TCTGAGAACTGAATTTGTAAGGCATAT 58.951 33.333 0.00 0.00 0.00 1.78
2776 3671 4.093556 GTGTGAATTTCTTCGGAGGTCATC 59.906 45.833 0.00 0.00 33.86 2.92
2802 3697 4.201657 CCTATGTTCATGAGGTCATTGCA 58.798 43.478 12.77 0.00 33.61 4.08
2803 3698 4.641541 CCTATGTTCATGAGGTCATTGCAA 59.358 41.667 0.00 0.00 33.61 4.08
2811 3706 3.499202 ATGAGGTCATTGCAAGGTGACTT 60.499 43.478 24.91 20.47 42.48 3.01
2823 3718 3.094484 AGGTGACTTGGTTTTGACCAA 57.906 42.857 10.31 10.31 46.50 3.67
2895 3798 3.126831 GTCCATCAAGCTTATCTCCACG 58.873 50.000 0.00 0.00 0.00 4.94
2896 3799 2.766263 TCCATCAAGCTTATCTCCACGT 59.234 45.455 0.00 0.00 0.00 4.49
2902 3808 3.402628 AGCTTATCTCCACGTTTGTGT 57.597 42.857 0.00 0.00 44.92 3.72
2917 3823 5.302823 ACGTTTGTGTTAGGTCTAGGTTAGT 59.697 40.000 0.00 0.00 0.00 2.24
3225 4145 5.362430 TGTGGGTGAAGCTAAAATTGAGTTT 59.638 36.000 0.00 0.00 0.00 2.66
3242 4162 6.636666 TGAGTTTAAGCGTTCGGTTATAAG 57.363 37.500 15.53 0.00 0.00 1.73
3373 4297 2.095364 GTCAACACGACGACTCCATAGT 60.095 50.000 0.00 0.00 34.84 2.12
3388 4312 4.713553 TCCATAGTCATTGTTGTGTGTGT 58.286 39.130 0.00 0.00 0.00 3.72
3396 4320 0.615850 TGTTGTGTGTGTCCTGTCCA 59.384 50.000 0.00 0.00 0.00 4.02
3419 4343 5.612725 TCAACTTTCTCTTTGGCCAATTT 57.387 34.783 21.26 0.00 0.00 1.82
3454 4378 3.914426 CAGGTTCTAGTTACTGCCCAT 57.086 47.619 0.00 0.00 0.00 4.00
3455 4379 3.798202 CAGGTTCTAGTTACTGCCCATC 58.202 50.000 0.00 0.00 0.00 3.51
3456 4380 3.197766 CAGGTTCTAGTTACTGCCCATCA 59.802 47.826 0.00 0.00 0.00 3.07
3457 4381 3.844211 AGGTTCTAGTTACTGCCCATCAA 59.156 43.478 0.00 0.00 0.00 2.57
3458 4382 3.939592 GGTTCTAGTTACTGCCCATCAAC 59.060 47.826 0.00 0.00 0.00 3.18
3459 4383 4.323562 GGTTCTAGTTACTGCCCATCAACT 60.324 45.833 0.00 0.00 35.50 3.16
3460 4384 5.105064 GGTTCTAGTTACTGCCCATCAACTA 60.105 44.000 0.00 0.00 33.47 2.24
3461 4385 5.854010 TCTAGTTACTGCCCATCAACTAG 57.146 43.478 12.11 12.11 46.14 2.57
3462 4386 5.269991 TCTAGTTACTGCCCATCAACTAGT 58.730 41.667 15.97 0.00 45.47 2.57
3463 4387 4.910458 AGTTACTGCCCATCAACTAGTT 57.090 40.909 1.12 1.12 29.67 2.24
3464 4388 6.893554 TCTAGTTACTGCCCATCAACTAGTTA 59.106 38.462 8.04 0.00 45.47 2.24
3465 4389 6.561519 AGTTACTGCCCATCAACTAGTTAT 57.438 37.500 8.04 0.08 29.67 1.89
3466 4390 6.958767 AGTTACTGCCCATCAACTAGTTATT 58.041 36.000 8.04 0.00 29.67 1.40
3467 4391 6.823689 AGTTACTGCCCATCAACTAGTTATTG 59.176 38.462 8.04 8.69 29.67 1.90
3468 4392 3.947834 ACTGCCCATCAACTAGTTATTGC 59.052 43.478 8.04 7.67 0.00 3.56
3469 4393 3.947196 CTGCCCATCAACTAGTTATTGCA 59.053 43.478 8.04 11.54 0.00 4.08
3470 4394 4.339748 TGCCCATCAACTAGTTATTGCAA 58.660 39.130 8.04 0.00 0.00 4.08
3471 4395 4.769488 TGCCCATCAACTAGTTATTGCAAA 59.231 37.500 8.04 0.00 0.00 3.68
3472 4396 5.421693 TGCCCATCAACTAGTTATTGCAAAT 59.578 36.000 8.04 0.00 0.00 2.32
3473 4397 6.070881 TGCCCATCAACTAGTTATTGCAAATT 60.071 34.615 8.04 0.00 0.00 1.82
3474 4398 6.476706 GCCCATCAACTAGTTATTGCAAATTC 59.523 38.462 8.04 0.00 0.00 2.17
3475 4399 7.546358 CCCATCAACTAGTTATTGCAAATTCA 58.454 34.615 8.04 0.00 0.00 2.57
3476 4400 8.034215 CCCATCAACTAGTTATTGCAAATTCAA 58.966 33.333 8.04 0.00 0.00 2.69
3477 4401 9.590451 CCATCAACTAGTTATTGCAAATTCAAT 57.410 29.630 8.04 0.00 39.70 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
299 304 2.415624 TGCATCATCCTCCTCCTCATT 58.584 47.619 0.00 0.00 0.00 2.57
357 362 3.695830 TTGGCTTCGAGTATGAAACCT 57.304 42.857 0.00 0.00 35.56 3.50
480 485 2.386661 TTTCCTCATCTCGTTGGCTC 57.613 50.000 0.00 0.00 0.00 4.70
491 496 4.355549 TGATTCCTTGCCATTTTCCTCAT 58.644 39.130 0.00 0.00 0.00 2.90
684 691 4.336713 GGGCAAGATTGACATACTCCTTTC 59.663 45.833 0.02 0.00 38.18 2.62
756 763 0.740868 CATGACGTCAAGGCCATCGT 60.741 55.000 24.13 9.98 39.21 3.73
832 839 1.597027 CGTTCAAAGTCGGGTGCCT 60.597 57.895 0.00 0.00 0.00 4.75
835 842 0.249741 AGGTCGTTCAAAGTCGGGTG 60.250 55.000 0.00 0.00 0.00 4.61
836 843 0.249741 CAGGTCGTTCAAAGTCGGGT 60.250 55.000 0.00 0.00 0.00 5.28
864 871 3.546002 TGTGCTTTTATTGGCGTACAC 57.454 42.857 0.00 0.00 0.00 2.90
869 876 2.063156 TGCTTGTGCTTTTATTGGCG 57.937 45.000 0.00 0.00 40.48 5.69
873 880 3.090952 TGCGTTGCTTGTGCTTTTATT 57.909 38.095 0.00 0.00 40.48 1.40
899 912 0.739112 CGAGCTTGTCTCTCTTGCCC 60.739 60.000 0.00 0.00 39.70 5.36
921 935 0.451792 CTTTTCTGCTTCTCGTGCGC 60.452 55.000 0.00 0.00 0.00 6.09
962 976 4.647853 ACATACGAGCTCCTTTGGTATACA 59.352 41.667 8.47 0.00 0.00 2.29
983 997 2.432146 GACATGTCCTGGCTGATCTACA 59.568 50.000 15.31 0.00 0.00 2.74
984 998 2.544694 CGACATGTCCTGGCTGATCTAC 60.545 54.545 20.03 0.00 0.00 2.59
985 999 1.683385 CGACATGTCCTGGCTGATCTA 59.317 52.381 20.03 0.00 0.00 1.98
986 1000 0.463204 CGACATGTCCTGGCTGATCT 59.537 55.000 20.03 0.00 0.00 2.75
1044 1058 2.457366 ACAACACGAGGATCAGAACC 57.543 50.000 0.00 0.00 33.17 3.62
1060 1074 1.347707 CACCAGGAGGAGCAGTAACAA 59.652 52.381 0.00 0.00 38.69 2.83
1118 1132 3.814268 TGGTACGTCTACCGCCGC 61.814 66.667 0.00 0.00 45.22 6.53
1144 1164 2.924101 TAGGTTGGGGCGGACGTT 60.924 61.111 0.00 0.00 0.00 3.99
1162 1185 1.202463 AGGCATGATCTTCTTCCGTCG 60.202 52.381 0.00 0.00 0.00 5.12
1280 1334 4.214327 GAGGCTCGGGAGAAGGCG 62.214 72.222 0.00 0.00 39.18 5.52
1308 1374 0.681564 TCTGAGAAGGCTCGGGAGAC 60.682 60.000 0.00 0.00 45.72 3.36
1407 1479 2.123726 GCCCATGCTTCCCGGAAT 60.124 61.111 0.73 0.00 33.53 3.01
1486 1558 1.066573 CGAGAAGGTGGTCTGCTTCAT 60.067 52.381 0.00 0.00 29.38 2.57
1986 2320 0.106719 CCGGGCCACATGTTATCCTT 60.107 55.000 4.39 0.00 0.00 3.36
2035 2369 2.342648 GGCCTCGGAGTTGTCGTT 59.657 61.111 4.02 0.00 0.00 3.85
2061 2395 4.457603 TGCGCCTTGTAGATTGTTATGTTT 59.542 37.500 4.18 0.00 0.00 2.83
2247 2581 2.119457 GCCGAAGTTTGTTTCTTGCAG 58.881 47.619 0.00 0.00 0.00 4.41
2313 2647 0.815095 TGATAGCCTCTTTCGTCGCA 59.185 50.000 0.00 0.00 0.00 5.10
2394 2728 2.280524 TGCCCACGGTCACGAAAG 60.281 61.111 0.00 0.00 44.60 2.62
2399 2733 3.660111 GCTTGTGCCCACGGTCAC 61.660 66.667 0.00 0.00 32.96 3.67
2425 2759 1.535462 GCATACACTTGTTGCGGAAGT 59.465 47.619 0.00 0.00 33.82 3.01
2502 2857 3.119352 TGCATGTGTTGTTGCTGTTGTTA 60.119 39.130 0.00 0.00 39.60 2.41
2510 2865 1.527736 CAACCATGCATGTGTTGTTGC 59.472 47.619 31.76 0.00 35.81 4.17
2628 2983 2.225491 ACACGGTGTATGATTTGCACAC 59.775 45.455 12.96 0.00 42.21 3.82
2776 3671 4.694760 TGACCTCATGAACATAGGGATG 57.305 45.455 0.00 0.00 39.16 3.51
2820 3715 5.458041 ACCACAACAAAGATCAAGATTGG 57.542 39.130 0.00 0.00 0.00 3.16
2823 3718 4.262164 GGCAACCACAACAAAGATCAAGAT 60.262 41.667 0.00 0.00 0.00 2.40
2895 3798 7.816513 CCTAACTAACCTAGACCTAACACAAAC 59.183 40.741 0.00 0.00 0.00 2.93
2896 3799 7.526025 GCCTAACTAACCTAGACCTAACACAAA 60.526 40.741 0.00 0.00 0.00 2.83
2902 3808 5.837438 GGATGCCTAACTAACCTAGACCTAA 59.163 44.000 0.00 0.00 0.00 2.69
2917 3823 2.432444 CGACCAACAAAGGATGCCTAA 58.568 47.619 0.00 0.00 31.13 2.69
3173 4079 1.818674 ACTCAATTTTAGCTTGGCCCG 59.181 47.619 0.00 0.00 0.00 6.13
3203 4123 7.589958 TTAAACTCAATTTTAGCTTCACCCA 57.410 32.000 0.00 0.00 0.00 4.51
3225 4145 4.114058 ACTGCTTATAACCGAACGCTTA 57.886 40.909 0.00 0.00 0.00 3.09
3242 4162 8.587952 ACATTTCCTTTGTAATTGTTTACTGC 57.412 30.769 0.00 0.00 38.81 4.40
3373 4297 2.942376 GACAGGACACACACAACAATGA 59.058 45.455 0.00 0.00 0.00 2.57
3381 4305 1.873591 GTTGATGGACAGGACACACAC 59.126 52.381 0.00 0.00 0.00 3.82
3388 4312 4.982241 AAGAGAAAGTTGATGGACAGGA 57.018 40.909 0.00 0.00 0.00 3.86
3396 4320 5.813513 AATTGGCCAAAGAGAAAGTTGAT 57.186 34.783 24.71 0.00 0.00 2.57
3423 4347 8.299570 CAGTAACTAGAACCTGCAATTGAATTT 58.700 33.333 10.34 0.00 0.00 1.82
3451 4375 8.984891 TTGAATTTGCAATAACTAGTTGATGG 57.015 30.769 18.56 6.71 0.00 3.51
3456 4380 8.720562 GCCAAATTGAATTTGCAATAACTAGTT 58.279 29.630 21.85 13.68 46.27 2.24
3457 4381 7.877097 TGCCAAATTGAATTTGCAATAACTAGT 59.123 29.630 21.85 0.00 46.27 2.57
3458 4382 8.254178 TGCCAAATTGAATTTGCAATAACTAG 57.746 30.769 21.85 8.68 46.27 2.57
3459 4383 8.613060 TTGCCAAATTGAATTTGCAATAACTA 57.387 26.923 21.85 7.58 46.27 2.24
3460 4384 7.507733 TTGCCAAATTGAATTTGCAATAACT 57.492 28.000 21.85 0.00 46.27 2.24
3461 4385 7.861872 AGTTTGCCAAATTGAATTTGCAATAAC 59.138 29.630 25.71 22.72 46.27 1.89
3462 4386 7.938715 AGTTTGCCAAATTGAATTTGCAATAA 58.061 26.923 25.71 16.81 46.27 1.40
3463 4387 7.507733 AGTTTGCCAAATTGAATTTGCAATA 57.492 28.000 25.71 18.64 46.27 1.90
3464 4388 6.394025 AGTTTGCCAAATTGAATTTGCAAT 57.606 29.167 25.71 16.81 46.27 3.56
3465 4389 5.831702 AGTTTGCCAAATTGAATTTGCAA 57.168 30.435 21.85 22.83 46.27 4.08
3466 4390 6.932356 TTAGTTTGCCAAATTGAATTTGCA 57.068 29.167 21.85 19.39 46.27 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.