Multiple sequence alignment - TraesCS1D01G065900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G065900 chr1D 100.000 4346 0 0 1 4346 47647865 47652210 0.000000e+00 8026.0
1 TraesCS1D01G065900 chr1D 77.395 1190 229 29 1277 2449 467801319 467802485 0.000000e+00 671.0
2 TraesCS1D01G065900 chr1D 91.776 304 23 2 805 1107 47593594 47593896 5.200000e-114 422.0
3 TraesCS1D01G065900 chr1D 95.522 134 3 2 3589 3719 299268547 299268414 1.220000e-50 211.0
4 TraesCS1D01G065900 chr1D 76.839 367 75 9 17 378 347213368 347213007 9.530000e-47 198.0
5 TraesCS1D01G065900 chr1D 78.307 189 35 6 192 378 302908273 302908457 2.750000e-22 117.0
6 TraesCS1D01G065900 chr1D 82.456 114 18 2 2459 2571 467802597 467802709 9.950000e-17 99.0
7 TraesCS1D01G065900 chr1B 94.156 2738 105 25 747 3462 67410684 67413388 0.000000e+00 4119.0
8 TraesCS1D01G065900 chr1B 90.966 321 18 3 4022 4334 67414445 67414762 5.200000e-114 422.0
9 TraesCS1D01G065900 chr1B 93.488 215 10 2 3713 3925 67413597 67413809 2.520000e-82 316.0
10 TraesCS1D01G065900 chr1B 96.429 168 3 2 560 724 67410461 67410628 1.540000e-69 274.0
11 TraesCS1D01G065900 chr1B 90.244 164 9 6 381 543 67179378 67179535 1.580000e-49 207.0
12 TraesCS1D01G065900 chr1B 94.697 132 5 1 3461 3590 67413467 67413598 2.050000e-48 204.0
13 TraesCS1D01G065900 chr1B 93.684 95 5 1 3926 4019 67414132 67414226 1.630000e-29 141.0
14 TraesCS1D01G065900 chr1B 83.333 114 17 2 2459 2571 645708736 645708848 2.140000e-18 104.0
15 TraesCS1D01G065900 chr1B 92.105 38 2 1 400 437 653324407 653324371 8.000000e-03 52.8
16 TraesCS1D01G065900 chr1B 92.105 38 2 1 400 437 653475844 653475808 8.000000e-03 52.8
17 TraesCS1D01G065900 chr1A 89.175 1358 93 26 615 1940 47516498 47517833 0.000000e+00 1644.0
18 TraesCS1D01G065900 chr1A 93.536 1052 45 12 2558 3592 47519610 47520655 0.000000e+00 1544.0
19 TraesCS1D01G065900 chr1A 98.095 630 12 0 1932 2561 47518879 47519508 0.000000e+00 1098.0
20 TraesCS1D01G065900 chr1A 87.167 413 24 7 3925 4333 47521130 47521517 3.990000e-120 442.0
21 TraesCS1D01G065900 chr1A 80.435 368 59 10 17 378 583949938 583950298 7.160000e-68 268.0
22 TraesCS1D01G065900 chr1A 79.947 379 63 11 3 374 27400918 27400546 2.580000e-67 267.0
23 TraesCS1D01G065900 chr1A 81.651 218 16 2 3713 3928 47520652 47520847 4.500000e-35 159.0
24 TraesCS1D01G065900 chr6B 77.649 1293 239 39 1200 2458 123911115 123912391 0.000000e+00 741.0
25 TraesCS1D01G065900 chr6B 73.596 1193 258 42 1282 2449 71496559 71495399 5.230000e-109 405.0
26 TraesCS1D01G065900 chr6B 75.955 628 130 16 1829 2449 71356567 71355954 1.960000e-78 303.0
27 TraesCS1D01G065900 chr6B 81.034 174 29 2 1279 1450 10852875 10852704 7.580000e-28 135.0
28 TraesCS1D01G065900 chr6B 76.166 193 42 3 2248 2438 19198252 19198442 9.950000e-17 99.0
29 TraesCS1D01G065900 chr6D 77.116 1276 252 34 1203 2458 47638451 47637196 0.000000e+00 702.0
30 TraesCS1D01G065900 chr6D 73.074 1285 286 47 1191 2449 34588632 34587382 6.770000e-108 401.0
31 TraesCS1D01G065900 chr6D 73.599 553 107 22 1912 2458 13821718 13822237 4.470000e-40 176.0
32 TraesCS1D01G065900 chr6D 77.992 259 49 5 1912 2169 5112819 5112568 5.820000e-34 156.0
33 TraesCS1D01G065900 chr6D 76.062 259 49 6 3066 3321 5044750 5044998 5.900000e-24 122.0
34 TraesCS1D01G065900 chr6D 75.281 267 52 7 3066 3328 5250065 5249809 9.880000e-22 115.0
35 TraesCS1D01G065900 chr5B 83.947 380 51 9 3 379 711704484 711704856 5.350000e-94 355.0
36 TraesCS1D01G065900 chr5B 75.907 386 73 20 4 381 711704804 711704431 3.450000e-41 180.0
37 TraesCS1D01G065900 chr5B 85.938 64 9 0 400 463 510807542 510807605 7.800000e-08 69.4
38 TraesCS1D01G065900 chr3A 81.163 361 56 9 17 371 28323088 28323442 3.310000e-71 279.0
39 TraesCS1D01G065900 chr3A 94.815 135 5 1 3586 3718 112955984 112955850 4.400000e-50 209.0
40 TraesCS1D01G065900 chr7B 79.944 359 60 9 25 378 720969642 720969291 2.010000e-63 254.0
41 TraesCS1D01G065900 chr7B 80.000 100 18 2 400 498 103298592 103298494 6.030000e-09 73.1
42 TraesCS1D01G065900 chr7D 83.146 267 36 8 17 282 19573938 19574196 7.270000e-58 235.0
43 TraesCS1D01G065900 chr7D 95.489 133 4 2 3589 3720 86806149 86806018 1.220000e-50 211.0
44 TraesCS1D01G065900 chr7D 93.571 140 5 3 3583 3719 635616487 635616349 5.700000e-49 206.0
45 TraesCS1D01G065900 chr7A 96.241 133 3 1 3585 3715 732956245 732956113 2.630000e-52 217.0
46 TraesCS1D01G065900 chr7A 96.875 32 0 1 400 431 463015025 463015055 8.000000e-03 52.8
47 TraesCS1D01G065900 chr2B 96.212 132 3 1 3588 3717 90047737 90047868 9.470000e-52 215.0
48 TraesCS1D01G065900 chr4B 78.022 364 63 14 16 371 44658240 44658594 3.400000e-51 213.0
49 TraesCS1D01G065900 chr4B 77.534 365 63 16 16 371 44469001 44469355 7.370000e-48 202.0
50 TraesCS1D01G065900 chr2D 94.286 140 5 3 3573 3710 451959042 451958904 1.220000e-50 211.0
51 TraesCS1D01G065900 chr4D 94.203 138 6 1 3582 3717 401368555 401368418 4.400000e-50 209.0
52 TraesCS1D01G065900 chr5D 94.161 137 6 1 3588 3722 414245790 414245654 1.580000e-49 207.0
53 TraesCS1D01G065900 chr5D 77.193 342 44 16 2463 2787 527572673 527572349 7.470000e-38 169.0
54 TraesCS1D01G065900 chr5D 77.193 342 44 16 2463 2787 527602236 527601912 7.470000e-38 169.0
55 TraesCS1D01G065900 chrUn 76.923 260 50 9 1912 2169 147965641 147965390 5.860000e-29 139.0
56 TraesCS1D01G065900 chr6A 82.432 148 22 4 226 371 612558157 612558302 4.560000e-25 126.0
57 TraesCS1D01G065900 chr5A 93.182 44 2 1 400 442 466010827 466010784 3.630000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G065900 chr1D 47647865 47652210 4345 False 8026.000000 8026 100.000000 1 4346 1 chr1D.!!$F2 4345
1 TraesCS1D01G065900 chr1D 467801319 467802709 1390 False 385.000000 671 79.925500 1277 2571 2 chr1D.!!$F4 1294
2 TraesCS1D01G065900 chr1B 67410461 67414762 4301 False 912.666667 4119 93.903333 560 4334 6 chr1B.!!$F3 3774
3 TraesCS1D01G065900 chr1A 47516498 47521517 5019 False 977.400000 1644 89.924800 615 4333 5 chr1A.!!$F2 3718
4 TraesCS1D01G065900 chr6B 123911115 123912391 1276 False 741.000000 741 77.649000 1200 2458 1 chr6B.!!$F2 1258
5 TraesCS1D01G065900 chr6B 71495399 71496559 1160 True 405.000000 405 73.596000 1282 2449 1 chr6B.!!$R3 1167
6 TraesCS1D01G065900 chr6B 71355954 71356567 613 True 303.000000 303 75.955000 1829 2449 1 chr6B.!!$R2 620
7 TraesCS1D01G065900 chr6D 47637196 47638451 1255 True 702.000000 702 77.116000 1203 2458 1 chr6D.!!$R4 1255
8 TraesCS1D01G065900 chr6D 34587382 34588632 1250 True 401.000000 401 73.074000 1191 2449 1 chr6D.!!$R3 1258

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 395 0.173481 TTCTTCCAGAGTCGGCATCG 59.827 55.0 0.00 0.00 37.82 3.84 F
610 614 0.179468 GTGTGCCGGCTTTATCCCTA 59.821 55.0 29.70 0.00 0.00 3.53 F
1259 1342 0.409092 AATCACACCAGCATTCCCCA 59.591 50.0 0.00 0.00 0.00 4.96 F
1718 1825 0.671781 CACTCCCAAGCGTCCAGAAG 60.672 60.0 0.00 0.00 0.00 2.85 F
2964 4341 0.446616 GCTAACAGCGGGTAGTTTGC 59.553 55.0 10.72 5.49 38.75 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 1993 0.178068 GCAACAGCGGAAGAGGGATA 59.822 55.000 0.00 0.0 0.0 2.59 R
2334 3499 1.729284 TTCTTTAACGGCGTCCCATC 58.271 50.000 15.17 0.0 0.0 3.51 R
2959 4336 0.376852 TCTGACACACAAGCGCAAAC 59.623 50.000 11.47 0.0 0.0 2.93 R
3220 4602 2.248248 TCCTCCTTCACATGTCGTTCT 58.752 47.619 0.00 0.0 0.0 3.01 R
4143 6168 0.971386 TCAGTGTACCCGGGTTTCTC 59.029 55.000 35.42 23.9 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.995003 AAAAATTCTGGAAAAATATGTAGCACA 57.005 25.926 0.00 0.00 0.00 4.57
55 56 9.807649 AATTCTGGAAAAATATGTAGCACATTC 57.192 29.630 7.02 0.86 39.88 2.67
56 57 7.936496 TCTGGAAAAATATGTAGCACATTCA 57.064 32.000 7.02 0.00 39.88 2.57
57 58 7.761409 TCTGGAAAAATATGTAGCACATTCAC 58.239 34.615 7.02 0.00 39.88 3.18
58 59 7.392953 TCTGGAAAAATATGTAGCACATTCACA 59.607 33.333 7.02 0.00 39.88 3.58
59 60 8.065473 TGGAAAAATATGTAGCACATTCACAT 57.935 30.769 7.02 0.00 39.88 3.21
60 61 9.183368 TGGAAAAATATGTAGCACATTCACATA 57.817 29.630 7.02 0.00 39.88 2.29
69 70 9.955208 ATGTAGCACATTCACATAACAATAATG 57.045 29.630 0.00 0.00 34.67 1.90
70 71 8.955388 TGTAGCACATTCACATAACAATAATGT 58.045 29.630 0.00 0.00 43.14 2.71
73 74 9.955208 AGCACATTCACATAACAATAATGTATG 57.045 29.630 0.00 0.00 39.40 2.39
74 75 9.734620 GCACATTCACATAACAATAATGTATGT 57.265 29.630 0.00 0.00 39.40 2.29
129 130 8.846943 ACATAGTTTGAGATACAACAATGACA 57.153 30.769 0.00 0.00 38.29 3.58
130 131 9.283768 ACATAGTTTGAGATACAACAATGACAA 57.716 29.630 0.00 0.00 38.29 3.18
134 135 9.683069 AGTTTGAGATACAACAATGACAAATTC 57.317 29.630 0.00 0.00 38.29 2.17
135 136 9.462174 GTTTGAGATACAACAATGACAAATTCA 57.538 29.630 0.00 0.00 38.29 2.57
137 138 9.462174 TTGAGATACAACAATGACAAATTCAAC 57.538 29.630 0.00 0.00 33.77 3.18
138 139 8.628280 TGAGATACAACAATGACAAATTCAACA 58.372 29.630 0.00 0.00 37.92 3.33
139 140 9.630098 GAGATACAACAATGACAAATTCAACAT 57.370 29.630 0.00 0.00 37.92 2.71
140 141 9.985730 AGATACAACAATGACAAATTCAACATT 57.014 25.926 0.00 0.00 37.92 2.71
142 143 9.761504 ATACAACAATGACAAATTCAACATTGA 57.238 25.926 24.47 11.93 46.81 2.57
143 144 8.133754 ACAACAATGACAAATTCAACATTGAG 57.866 30.769 24.47 19.98 46.81 3.02
144 145 7.765360 ACAACAATGACAAATTCAACATTGAGT 59.235 29.630 24.47 20.35 46.81 3.41
145 146 9.247126 CAACAATGACAAATTCAACATTGAGTA 57.753 29.630 24.47 0.00 46.81 2.59
146 147 9.467258 AACAATGACAAATTCAACATTGAGTAG 57.533 29.630 24.47 9.39 46.81 2.57
147 148 8.632679 ACAATGACAAATTCAACATTGAGTAGT 58.367 29.630 24.47 9.84 46.81 2.73
150 151 8.669946 TGACAAATTCAACATTGAGTAGTACA 57.330 30.769 2.52 0.00 38.61 2.90
151 152 9.283768 TGACAAATTCAACATTGAGTAGTACAT 57.716 29.630 2.52 0.00 38.61 2.29
157 158 9.719355 ATTCAACATTGAGTAGTACATAACACA 57.281 29.630 2.52 0.00 38.61 3.72
158 159 9.549078 TTCAACATTGAGTAGTACATAACACAA 57.451 29.630 2.52 2.29 38.61 3.33
159 160 9.203421 TCAACATTGAGTAGTACATAACACAAG 57.797 33.333 2.52 0.20 32.50 3.16
160 161 8.988934 CAACATTGAGTAGTACATAACACAAGT 58.011 33.333 2.52 0.71 0.00 3.16
161 162 9.555727 AACATTGAGTAGTACATAACACAAGTT 57.444 29.630 2.52 5.75 41.74 2.66
164 165 8.752766 TTGAGTAGTACATAACACAAGTTAGC 57.247 34.615 2.52 0.00 43.02 3.09
165 166 8.118976 TGAGTAGTACATAACACAAGTTAGCT 57.881 34.615 2.52 0.00 43.02 3.32
166 167 8.582437 TGAGTAGTACATAACACAAGTTAGCTT 58.418 33.333 2.52 0.00 43.02 3.74
167 168 9.420551 GAGTAGTACATAACACAAGTTAGCTTT 57.579 33.333 2.52 0.00 43.02 3.51
175 176 9.559958 CATAACACAAGTTAGCTTTAGATTTGG 57.440 33.333 0.00 0.00 43.02 3.28
176 177 6.013842 ACACAAGTTAGCTTTAGATTTGGC 57.986 37.500 0.00 0.00 31.49 4.52
177 178 5.770162 ACACAAGTTAGCTTTAGATTTGGCT 59.230 36.000 0.00 0.00 38.62 4.75
178 179 6.072452 ACACAAGTTAGCTTTAGATTTGGCTC 60.072 38.462 0.00 0.00 36.40 4.70
179 180 6.003950 ACAAGTTAGCTTTAGATTTGGCTCA 58.996 36.000 0.00 0.00 36.40 4.26
180 181 6.660949 ACAAGTTAGCTTTAGATTTGGCTCAT 59.339 34.615 0.00 0.00 36.40 2.90
181 182 7.177392 ACAAGTTAGCTTTAGATTTGGCTCATT 59.823 33.333 0.00 0.00 36.40 2.57
182 183 8.677300 CAAGTTAGCTTTAGATTTGGCTCATTA 58.323 33.333 0.00 0.00 36.40 1.90
183 184 8.986929 AGTTAGCTTTAGATTTGGCTCATTAT 57.013 30.769 0.00 0.00 36.40 1.28
184 185 9.061435 AGTTAGCTTTAGATTTGGCTCATTATC 57.939 33.333 0.00 0.00 36.40 1.75
185 186 8.840321 GTTAGCTTTAGATTTGGCTCATTATCA 58.160 33.333 0.00 0.00 36.40 2.15
186 187 9.578576 TTAGCTTTAGATTTGGCTCATTATCAT 57.421 29.630 0.00 0.00 36.40 2.45
188 189 9.750783 AGCTTTAGATTTGGCTCATTATCATAT 57.249 29.630 0.00 0.00 0.00 1.78
194 195 9.529823 AGATTTGGCTCATTATCATATTGATGT 57.470 29.630 0.30 0.00 37.70 3.06
195 196 9.784680 GATTTGGCTCATTATCATATTGATGTC 57.215 33.333 0.30 0.00 37.70 3.06
196 197 8.694581 TTTGGCTCATTATCATATTGATGTCA 57.305 30.769 0.30 0.00 37.70 3.58
197 198 8.694581 TTGGCTCATTATCATATTGATGTCAA 57.305 30.769 0.00 0.00 37.70 3.18
198 199 8.694581 TGGCTCATTATCATATTGATGTCAAA 57.305 30.769 0.00 0.00 37.70 2.69
199 200 9.304335 TGGCTCATTATCATATTGATGTCAAAT 57.696 29.630 0.00 0.00 37.70 2.32
228 229 8.827177 TCAGTTTTTGTATCTCGAGTAATGTT 57.173 30.769 13.13 0.00 0.00 2.71
229 230 9.268268 TCAGTTTTTGTATCTCGAGTAATGTTT 57.732 29.630 13.13 0.00 0.00 2.83
230 231 9.878599 CAGTTTTTGTATCTCGAGTAATGTTTT 57.121 29.630 13.13 0.00 0.00 2.43
231 232 9.878599 AGTTTTTGTATCTCGAGTAATGTTTTG 57.121 29.630 13.13 0.00 0.00 2.44
232 233 9.872757 GTTTTTGTATCTCGAGTAATGTTTTGA 57.127 29.630 13.13 0.00 0.00 2.69
276 277 8.861033 ATGACAACATACATTGATGTTATTGC 57.139 30.769 1.46 3.41 46.02 3.56
277 278 7.257003 TGACAACATACATTGATGTTATTGCC 58.743 34.615 1.46 0.00 46.02 4.52
278 279 7.094032 TGACAACATACATTGATGTTATTGCCA 60.094 33.333 1.46 1.88 46.02 4.92
279 280 7.609960 ACAACATACATTGATGTTATTGCCAA 58.390 30.769 1.46 0.00 46.02 4.52
280 281 8.259411 ACAACATACATTGATGTTATTGCCAAT 58.741 29.630 1.46 0.00 46.02 3.16
281 282 8.544597 CAACATACATTGATGTTATTGCCAATG 58.455 33.333 0.00 0.00 46.02 2.82
285 286 6.971527 CATTGATGTTATTGCCAATGTGTT 57.028 33.333 0.00 0.00 40.31 3.32
287 288 8.476657 CATTGATGTTATTGCCAATGTGTTAA 57.523 30.769 0.00 0.00 40.31 2.01
288 289 8.933807 CATTGATGTTATTGCCAATGTGTTAAA 58.066 29.630 0.00 0.00 40.31 1.52
289 290 8.893219 TTGATGTTATTGCCAATGTGTTAAAA 57.107 26.923 0.00 0.00 0.00 1.52
290 291 8.893219 TGATGTTATTGCCAATGTGTTAAAAA 57.107 26.923 0.00 0.00 0.00 1.94
291 292 9.499479 TGATGTTATTGCCAATGTGTTAAAAAT 57.501 25.926 0.00 0.00 0.00 1.82
334 335 6.677027 TTTTAAAATGTGTTAATGCGTCCG 57.323 33.333 0.00 0.00 0.00 4.79
335 336 5.608676 TTAAAATGTGTTAATGCGTCCGA 57.391 34.783 0.00 0.00 0.00 4.55
336 337 4.695217 AAAATGTGTTAATGCGTCCGAT 57.305 36.364 0.00 0.00 0.00 4.18
337 338 3.673746 AATGTGTTAATGCGTCCGATG 57.326 42.857 0.00 0.00 0.00 3.84
338 339 2.087501 TGTGTTAATGCGTCCGATGT 57.912 45.000 0.00 0.00 0.00 3.06
339 340 3.233684 TGTGTTAATGCGTCCGATGTA 57.766 42.857 0.00 0.00 0.00 2.29
340 341 2.924926 TGTGTTAATGCGTCCGATGTAC 59.075 45.455 0.00 0.00 0.00 2.90
341 342 2.283351 GTGTTAATGCGTCCGATGTACC 59.717 50.000 0.00 0.00 0.00 3.34
342 343 1.519758 GTTAATGCGTCCGATGTACCG 59.480 52.381 0.00 0.00 0.00 4.02
349 350 4.724022 CCGATGTACCGGTAGCAC 57.276 61.111 16.41 6.82 44.23 4.40
350 351 1.066918 CCGATGTACCGGTAGCACC 59.933 63.158 16.41 6.52 44.23 5.01
351 352 1.669049 CCGATGTACCGGTAGCACCA 61.669 60.000 16.41 10.00 44.23 4.17
352 353 0.526954 CGATGTACCGGTAGCACCAC 60.527 60.000 16.41 5.10 38.47 4.16
353 354 0.533491 GATGTACCGGTAGCACCACA 59.467 55.000 16.41 11.67 38.47 4.17
354 355 0.978151 ATGTACCGGTAGCACCACAA 59.022 50.000 16.41 0.00 38.47 3.33
355 356 0.319083 TGTACCGGTAGCACCACAAG 59.681 55.000 16.41 0.00 38.47 3.16
356 357 1.017701 GTACCGGTAGCACCACAAGC 61.018 60.000 16.41 0.00 38.47 4.01
357 358 1.473497 TACCGGTAGCACCACAAGCA 61.473 55.000 11.16 0.00 38.47 3.91
358 359 2.325082 CCGGTAGCACCACAAGCAC 61.325 63.158 0.00 0.00 38.47 4.40
359 360 2.325082 CGGTAGCACCACAAGCACC 61.325 63.158 6.21 0.00 38.47 5.01
360 361 2.325082 GGTAGCACCACAAGCACCG 61.325 63.158 1.01 0.00 38.42 4.94
361 362 2.031919 TAGCACCACAAGCACCGG 59.968 61.111 0.00 0.00 0.00 5.28
362 363 2.813726 TAGCACCACAAGCACCGGT 61.814 57.895 0.00 0.00 0.00 5.28
373 374 3.030652 CACCGGTGCACCAGAAAC 58.969 61.111 34.16 7.59 35.14 2.78
374 375 1.821759 CACCGGTGCACCAGAAACA 60.822 57.895 34.16 0.00 35.14 2.83
375 376 1.150536 ACCGGTGCACCAGAAACAT 59.849 52.632 34.16 4.93 35.14 2.71
376 377 0.467290 ACCGGTGCACCAGAAACATT 60.467 50.000 34.16 4.14 35.14 2.71
377 378 0.240945 CCGGTGCACCAGAAACATTC 59.759 55.000 34.16 4.51 35.14 2.67
378 379 1.238439 CGGTGCACCAGAAACATTCT 58.762 50.000 34.16 0.00 41.70 2.40
379 380 1.608590 CGGTGCACCAGAAACATTCTT 59.391 47.619 34.16 0.00 38.11 2.52
380 381 2.350772 CGGTGCACCAGAAACATTCTTC 60.351 50.000 34.16 3.30 38.11 2.87
381 382 2.029918 GGTGCACCAGAAACATTCTTCC 60.030 50.000 31.23 0.00 38.11 3.46
382 383 2.622942 GTGCACCAGAAACATTCTTCCA 59.377 45.455 5.22 0.00 38.11 3.53
383 384 2.886523 TGCACCAGAAACATTCTTCCAG 59.113 45.455 0.00 0.00 38.11 3.86
384 385 3.149196 GCACCAGAAACATTCTTCCAGA 58.851 45.455 0.00 0.00 38.11 3.86
385 386 3.190118 GCACCAGAAACATTCTTCCAGAG 59.810 47.826 0.00 0.00 38.11 3.35
386 387 4.392940 CACCAGAAACATTCTTCCAGAGT 58.607 43.478 0.00 0.00 38.11 3.24
387 388 4.453819 CACCAGAAACATTCTTCCAGAGTC 59.546 45.833 0.00 0.00 38.11 3.36
388 389 3.681897 CCAGAAACATTCTTCCAGAGTCG 59.318 47.826 0.00 0.00 38.11 4.18
389 390 3.681897 CAGAAACATTCTTCCAGAGTCGG 59.318 47.826 0.00 0.00 38.11 4.79
390 391 2.100605 AACATTCTTCCAGAGTCGGC 57.899 50.000 0.00 0.00 0.00 5.54
391 392 0.976641 ACATTCTTCCAGAGTCGGCA 59.023 50.000 0.00 0.00 0.00 5.69
392 393 1.556911 ACATTCTTCCAGAGTCGGCAT 59.443 47.619 0.00 0.00 0.00 4.40
393 394 2.208431 CATTCTTCCAGAGTCGGCATC 58.792 52.381 0.00 0.00 0.00 3.91
394 395 0.173481 TTCTTCCAGAGTCGGCATCG 59.827 55.000 0.00 0.00 37.82 3.84
395 396 0.679960 TCTTCCAGAGTCGGCATCGA 60.680 55.000 0.00 0.00 43.86 3.59
396 397 0.248825 CTTCCAGAGTCGGCATCGAG 60.249 60.000 0.00 0.00 46.91 4.04
397 398 2.279120 CCAGAGTCGGCATCGAGC 60.279 66.667 0.00 0.00 46.91 5.03
398 399 2.780094 CCAGAGTCGGCATCGAGCT 61.780 63.158 6.78 0.00 46.91 4.09
399 400 1.448119 CCAGAGTCGGCATCGAGCTA 61.448 60.000 6.78 0.00 46.91 3.32
400 401 0.595588 CAGAGTCGGCATCGAGCTAT 59.404 55.000 6.78 0.00 46.91 2.97
401 402 0.595588 AGAGTCGGCATCGAGCTATG 59.404 55.000 6.78 0.00 46.91 2.23
408 409 3.511182 CATCGAGCTATGCAGGAGG 57.489 57.895 0.00 0.00 0.00 4.30
409 410 0.964700 CATCGAGCTATGCAGGAGGA 59.035 55.000 0.00 0.00 0.00 3.71
410 411 1.342496 CATCGAGCTATGCAGGAGGAA 59.658 52.381 0.00 0.00 0.00 3.36
411 412 1.035923 TCGAGCTATGCAGGAGGAAG 58.964 55.000 0.00 0.00 0.00 3.46
412 413 1.035923 CGAGCTATGCAGGAGGAAGA 58.964 55.000 0.00 0.00 0.00 2.87
413 414 1.410517 CGAGCTATGCAGGAGGAAGAA 59.589 52.381 0.00 0.00 0.00 2.52
414 415 2.545532 CGAGCTATGCAGGAGGAAGAAG 60.546 54.545 0.00 0.00 0.00 2.85
415 416 2.697751 GAGCTATGCAGGAGGAAGAAGA 59.302 50.000 0.00 0.00 0.00 2.87
416 417 2.433970 AGCTATGCAGGAGGAAGAAGAC 59.566 50.000 0.00 0.00 0.00 3.01
417 418 2.433970 GCTATGCAGGAGGAAGAAGACT 59.566 50.000 0.00 0.00 0.00 3.24
418 419 3.118445 GCTATGCAGGAGGAAGAAGACTT 60.118 47.826 0.00 0.00 39.24 3.01
428 429 2.949142 GAAGAAGACTTCGACACCCTC 58.051 52.381 9.53 0.00 42.14 4.30
429 430 1.996798 AGAAGACTTCGACACCCTCA 58.003 50.000 9.53 0.00 34.02 3.86
430 431 2.317040 AGAAGACTTCGACACCCTCAA 58.683 47.619 9.53 0.00 34.02 3.02
431 432 2.297597 AGAAGACTTCGACACCCTCAAG 59.702 50.000 9.53 0.00 34.02 3.02
432 433 1.996798 AGACTTCGACACCCTCAAGA 58.003 50.000 0.00 0.00 0.00 3.02
433 434 2.317040 AGACTTCGACACCCTCAAGAA 58.683 47.619 0.00 0.00 0.00 2.52
434 435 2.900546 AGACTTCGACACCCTCAAGAAT 59.099 45.455 0.00 0.00 0.00 2.40
435 436 3.325135 AGACTTCGACACCCTCAAGAATT 59.675 43.478 0.00 0.00 0.00 2.17
436 437 4.065789 GACTTCGACACCCTCAAGAATTT 58.934 43.478 0.00 0.00 0.00 1.82
437 438 3.815401 ACTTCGACACCCTCAAGAATTTG 59.185 43.478 0.00 0.00 35.57 2.32
438 439 3.762407 TCGACACCCTCAAGAATTTGA 57.238 42.857 0.00 0.00 40.92 2.69
439 440 4.079980 TCGACACCCTCAAGAATTTGAA 57.920 40.909 0.00 0.00 42.48 2.69
440 441 4.651778 TCGACACCCTCAAGAATTTGAAT 58.348 39.130 0.00 0.00 42.48 2.57
441 442 4.455533 TCGACACCCTCAAGAATTTGAATG 59.544 41.667 0.00 0.00 42.48 2.67
442 443 4.488879 GACACCCTCAAGAATTTGAATGC 58.511 43.478 0.00 0.00 42.48 3.56
443 444 4.154942 ACACCCTCAAGAATTTGAATGCT 58.845 39.130 0.00 0.00 42.48 3.79
444 445 5.324409 ACACCCTCAAGAATTTGAATGCTA 58.676 37.500 0.00 0.00 42.48 3.49
445 446 5.954150 ACACCCTCAAGAATTTGAATGCTAT 59.046 36.000 0.00 0.00 42.48 2.97
446 447 6.438425 ACACCCTCAAGAATTTGAATGCTATT 59.562 34.615 0.00 0.00 42.48 1.73
447 448 7.038799 ACACCCTCAAGAATTTGAATGCTATTT 60.039 33.333 0.00 0.00 42.48 1.40
448 449 7.820872 CACCCTCAAGAATTTGAATGCTATTTT 59.179 33.333 0.00 0.00 42.48 1.82
449 450 9.034800 ACCCTCAAGAATTTGAATGCTATTTTA 57.965 29.630 0.00 0.00 42.48 1.52
476 477 8.657074 TTTTCTGTATGGATGTATTCGTAAGG 57.343 34.615 0.00 0.00 38.47 2.69
477 478 7.591421 TTCTGTATGGATGTATTCGTAAGGA 57.409 36.000 0.00 0.00 38.47 3.36
478 479 6.978338 TCTGTATGGATGTATTCGTAAGGAC 58.022 40.000 0.00 0.00 38.47 3.85
479 480 6.015688 TCTGTATGGATGTATTCGTAAGGACC 60.016 42.308 0.00 0.00 38.47 4.46
480 481 5.836898 TGTATGGATGTATTCGTAAGGACCT 59.163 40.000 0.00 0.00 38.47 3.85
481 482 4.665833 TGGATGTATTCGTAAGGACCTG 57.334 45.455 0.00 0.00 38.47 4.00
482 483 4.028131 TGGATGTATTCGTAAGGACCTGT 58.972 43.478 0.00 0.00 38.47 4.00
483 484 4.142026 TGGATGTATTCGTAAGGACCTGTG 60.142 45.833 0.00 0.00 38.47 3.66
484 485 4.098960 GGATGTATTCGTAAGGACCTGTGA 59.901 45.833 0.00 0.00 38.47 3.58
485 486 5.221461 GGATGTATTCGTAAGGACCTGTGAT 60.221 44.000 0.00 0.00 38.47 3.06
486 487 5.006153 TGTATTCGTAAGGACCTGTGATG 57.994 43.478 0.00 0.00 38.47 3.07
487 488 4.707934 TGTATTCGTAAGGACCTGTGATGA 59.292 41.667 0.00 0.00 38.47 2.92
488 489 5.362717 TGTATTCGTAAGGACCTGTGATGAT 59.637 40.000 0.00 0.00 38.47 2.45
489 490 4.819105 TTCGTAAGGACCTGTGATGATT 57.181 40.909 0.00 0.00 38.47 2.57
490 491 5.925506 TTCGTAAGGACCTGTGATGATTA 57.074 39.130 0.00 0.00 38.47 1.75
491 492 5.925506 TCGTAAGGACCTGTGATGATTAA 57.074 39.130 0.00 0.00 38.47 1.40
492 493 6.479972 TCGTAAGGACCTGTGATGATTAAT 57.520 37.500 0.00 0.00 38.47 1.40
493 494 7.591421 TCGTAAGGACCTGTGATGATTAATA 57.409 36.000 0.00 0.00 38.47 0.98
494 495 7.431249 TCGTAAGGACCTGTGATGATTAATAC 58.569 38.462 0.00 0.00 38.47 1.89
495 496 7.068962 TCGTAAGGACCTGTGATGATTAATACA 59.931 37.037 0.00 0.00 38.47 2.29
496 497 7.872993 CGTAAGGACCTGTGATGATTAATACAT 59.127 37.037 0.00 0.00 0.00 2.29
497 498 8.993121 GTAAGGACCTGTGATGATTAATACATG 58.007 37.037 0.00 0.00 0.00 3.21
498 499 7.379059 AGGACCTGTGATGATTAATACATGA 57.621 36.000 0.00 0.00 0.00 3.07
499 500 7.220030 AGGACCTGTGATGATTAATACATGAC 58.780 38.462 0.00 9.09 33.74 3.06
500 501 6.428159 GGACCTGTGATGATTAATACATGACC 59.572 42.308 0.00 6.26 32.56 4.02
501 502 6.299141 ACCTGTGATGATTAATACATGACCC 58.701 40.000 0.00 0.00 32.56 4.46
502 503 5.409520 CCTGTGATGATTAATACATGACCCG 59.590 44.000 0.00 6.24 32.56 5.28
503 504 4.754618 TGTGATGATTAATACATGACCCGC 59.245 41.667 0.00 4.42 32.56 6.13
504 505 4.754618 GTGATGATTAATACATGACCCGCA 59.245 41.667 0.00 0.00 0.00 5.69
505 506 5.238432 GTGATGATTAATACATGACCCGCAA 59.762 40.000 0.00 0.00 0.00 4.85
506 507 5.825151 TGATGATTAATACATGACCCGCAAA 59.175 36.000 0.00 0.00 0.00 3.68
507 508 6.319911 TGATGATTAATACATGACCCGCAAAA 59.680 34.615 0.00 0.00 0.00 2.44
508 509 6.516739 TGATTAATACATGACCCGCAAAAA 57.483 33.333 0.00 0.00 0.00 1.94
552 553 7.528996 TTTTTGAGACAAAGATGATGATGGT 57.471 32.000 0.00 0.00 0.00 3.55
553 554 6.505044 TTTGAGACAAAGATGATGATGGTG 57.495 37.500 0.00 0.00 0.00 4.17
554 555 5.425196 TGAGACAAAGATGATGATGGTGA 57.575 39.130 0.00 0.00 0.00 4.02
555 556 5.997843 TGAGACAAAGATGATGATGGTGAT 58.002 37.500 0.00 0.00 0.00 3.06
556 557 6.420638 TGAGACAAAGATGATGATGGTGATT 58.579 36.000 0.00 0.00 0.00 2.57
557 558 7.567458 TGAGACAAAGATGATGATGGTGATTA 58.433 34.615 0.00 0.00 0.00 1.75
558 559 8.048514 TGAGACAAAGATGATGATGGTGATTAA 58.951 33.333 0.00 0.00 0.00 1.40
610 614 0.179468 GTGTGCCGGCTTTATCCCTA 59.821 55.000 29.70 0.00 0.00 3.53
759 803 2.352805 CACAGCTCAACCCCTCCC 59.647 66.667 0.00 0.00 0.00 4.30
795 840 2.031465 GGGAGAAACAACCGGCGA 59.969 61.111 9.30 0.00 0.00 5.54
845 890 1.073768 GGCAAGCGACGACTCTTCTC 61.074 60.000 0.00 0.00 0.00 2.87
912 957 5.247564 TCCTCGTCTCTCCCAATTTCTTTTA 59.752 40.000 0.00 0.00 0.00 1.52
971 1016 1.284785 CTCCCTAATCAAACCCTGCCA 59.715 52.381 0.00 0.00 0.00 4.92
1010 1067 1.296523 AGGAGGGGAGATGGATTCTGT 59.703 52.381 0.00 0.00 33.74 3.41
1023 1080 8.100135 AGATGGATTCTGTTAAGGAGATTCTT 57.900 34.615 0.00 0.00 31.79 2.52
1061 1118 2.364970 CACATCCAGTCTCTCCATCTCC 59.635 54.545 0.00 0.00 0.00 3.71
1114 1172 6.697019 CAGTCTGTTTGTTTGTTTATCCCTTG 59.303 38.462 0.00 0.00 0.00 3.61
1119 1185 9.541143 CTGTTTGTTTGTTTATCCCTTGTTATT 57.459 29.630 0.00 0.00 0.00 1.40
1124 1190 8.865090 TGTTTGTTTATCCCTTGTTATTGATGT 58.135 29.630 0.00 0.00 0.00 3.06
1128 1194 8.865090 TGTTTATCCCTTGTTATTGATGTTGTT 58.135 29.630 0.00 0.00 0.00 2.83
1164 1235 7.820648 ACATTGCTAGTACTTGAAGAAATTGG 58.179 34.615 8.60 0.00 0.00 3.16
1259 1342 0.409092 AATCACACCAGCATTCCCCA 59.591 50.000 0.00 0.00 0.00 4.96
1274 1363 3.853330 CCAACGTCGATGCCTGCG 61.853 66.667 4.06 0.00 0.00 5.18
1505 1609 2.915659 TGTCCACGCTTCGTCCCT 60.916 61.111 0.00 0.00 38.32 4.20
1510 1614 1.134907 TCCACGCTTCGTCCCTATTTC 60.135 52.381 0.00 0.00 38.32 2.17
1718 1825 0.671781 CACTCCCAAGCGTCCAGAAG 60.672 60.000 0.00 0.00 0.00 2.85
1738 1845 2.038557 AGTCCAGGTACCACATGTTCAC 59.961 50.000 15.94 0.71 0.00 3.18
1782 1889 4.077184 CCGGCGGCTTGTCCTACA 62.077 66.667 15.42 0.00 0.00 2.74
1868 1975 2.956987 GGTGTCTGGTGCATGCAC 59.043 61.111 37.29 37.29 45.49 4.57
1879 1986 2.569059 GTGCATGCACACCTCATCTAT 58.431 47.619 39.12 0.00 45.53 1.98
1886 1993 3.198417 TGCACACCTCATCTATCACACAT 59.802 43.478 0.00 0.00 0.00 3.21
2364 3529 4.095610 GCCGTTAAAGAATGGACATTTCG 58.904 43.478 0.00 0.00 43.60 3.46
2378 3543 3.016736 ACATTTCGTTGATGTCCATCCC 58.983 45.455 4.90 0.00 37.02 3.85
2674 4047 8.117813 TCAATCCTGTAATTTTAGTTTCCCAC 57.882 34.615 0.00 0.00 0.00 4.61
2861 4238 8.825745 TCTTTTTCTTAAACACAATTGGATTGC 58.174 29.630 10.83 0.00 43.98 3.56
2908 4285 6.426980 TGAGTTTATGCATGAACTGTGATC 57.573 37.500 33.87 21.89 36.84 2.92
2964 4341 0.446616 GCTAACAGCGGGTAGTTTGC 59.553 55.000 10.72 5.49 38.75 3.68
2993 4370 5.934625 GTGTGTCAGACATTTCTCCTTGTAT 59.065 40.000 6.51 0.00 36.78 2.29
3009 4386 8.160765 TCTCCTTGTATGATCAGGTTTTTGTTA 58.839 33.333 0.09 0.00 0.00 2.41
3101 4483 3.788227 TCTATGTTGCTGGACCAAGTT 57.212 42.857 0.00 0.00 0.00 2.66
3125 4507 8.932791 GTTCATTCTTTTGATTTCTGAATGCAT 58.067 29.630 0.00 0.00 41.90 3.96
3185 4567 9.499479 AATGTTATGATGCTGAATAACCTCTAG 57.501 33.333 11.11 0.00 38.11 2.43
3196 4578 7.308951 GCTGAATAACCTCTAGTCTATCCTGAC 60.309 44.444 0.00 0.00 37.23 3.51
3220 4602 3.943671 TCCTCTGTTTCCTTCAACCAA 57.056 42.857 0.00 0.00 0.00 3.67
3226 4608 3.611970 TGTTTCCTTCAACCAAGAACGA 58.388 40.909 0.00 0.00 33.29 3.85
3321 4709 3.000322 CGCATTTCCTTAGTAGCAGTTCG 60.000 47.826 0.00 0.00 0.00 3.95
3413 4801 5.456042 CCCTATGGTACCATGACTATTTGCA 60.456 44.000 33.41 11.50 37.82 4.08
3437 4826 6.910536 ACGAGATATTGGTTTCATGAAGAC 57.089 37.500 8.41 9.69 0.00 3.01
3463 4932 4.703897 TCCCTGTATGCATGTTTACTAGC 58.296 43.478 10.16 0.00 0.00 3.42
3477 4946 6.878317 TGTTTACTAGCTATGCTGACTGATT 58.122 36.000 1.96 0.00 40.10 2.57
3532 5001 0.594602 TGCTCTGCTTGTCAATGTGC 59.405 50.000 0.00 0.00 0.00 4.57
3597 5069 6.607004 TTTAGCATAATAGCTACTCCCTCC 57.393 41.667 0.00 0.00 46.07 4.30
3598 5070 4.133526 AGCATAATAGCTACTCCCTCCA 57.866 45.455 0.00 0.00 44.50 3.86
3599 5071 4.693420 AGCATAATAGCTACTCCCTCCAT 58.307 43.478 0.00 0.00 44.50 3.41
3600 5072 5.097234 AGCATAATAGCTACTCCCTCCATT 58.903 41.667 0.00 0.00 44.50 3.16
3601 5073 5.188751 AGCATAATAGCTACTCCCTCCATTC 59.811 44.000 0.00 0.00 44.50 2.67
3602 5074 5.627968 GCATAATAGCTACTCCCTCCATTCC 60.628 48.000 0.00 0.00 0.00 3.01
3603 5075 3.637821 ATAGCTACTCCCTCCATTCCA 57.362 47.619 0.00 0.00 0.00 3.53
3604 5076 1.501582 AGCTACTCCCTCCATTCCAC 58.498 55.000 0.00 0.00 0.00 4.02
3605 5077 1.204146 GCTACTCCCTCCATTCCACA 58.796 55.000 0.00 0.00 0.00 4.17
3606 5078 1.559682 GCTACTCCCTCCATTCCACAA 59.440 52.381 0.00 0.00 0.00 3.33
3607 5079 2.173569 GCTACTCCCTCCATTCCACAAT 59.826 50.000 0.00 0.00 0.00 2.71
3608 5080 3.391296 GCTACTCCCTCCATTCCACAATA 59.609 47.826 0.00 0.00 0.00 1.90
3609 5081 3.933861 ACTCCCTCCATTCCACAATAC 57.066 47.619 0.00 0.00 0.00 1.89
3610 5082 3.189606 ACTCCCTCCATTCCACAATACA 58.810 45.455 0.00 0.00 0.00 2.29
3611 5083 3.788142 ACTCCCTCCATTCCACAATACAT 59.212 43.478 0.00 0.00 0.00 2.29
3612 5084 4.139786 CTCCCTCCATTCCACAATACATG 58.860 47.826 0.00 0.00 0.00 3.21
3613 5085 2.624838 CCCTCCATTCCACAATACATGC 59.375 50.000 0.00 0.00 0.00 4.06
3614 5086 2.624838 CCTCCATTCCACAATACATGCC 59.375 50.000 0.00 0.00 0.00 4.40
3615 5087 3.559069 CTCCATTCCACAATACATGCCT 58.441 45.455 0.00 0.00 0.00 4.75
3616 5088 3.956199 CTCCATTCCACAATACATGCCTT 59.044 43.478 0.00 0.00 0.00 4.35
3617 5089 4.352009 TCCATTCCACAATACATGCCTTT 58.648 39.130 0.00 0.00 0.00 3.11
3618 5090 4.402155 TCCATTCCACAATACATGCCTTTC 59.598 41.667 0.00 0.00 0.00 2.62
3619 5091 4.160065 CCATTCCACAATACATGCCTTTCA 59.840 41.667 0.00 0.00 0.00 2.69
3620 5092 5.163385 CCATTCCACAATACATGCCTTTCAT 60.163 40.000 0.00 0.00 35.31 2.57
3621 5093 5.999205 TTCCACAATACATGCCTTTCATT 57.001 34.783 0.00 0.00 31.79 2.57
3622 5094 5.999205 TCCACAATACATGCCTTTCATTT 57.001 34.783 0.00 0.00 31.79 2.32
3623 5095 5.722263 TCCACAATACATGCCTTTCATTTG 58.278 37.500 0.00 0.00 31.79 2.32
3624 5096 5.245751 TCCACAATACATGCCTTTCATTTGT 59.754 36.000 0.00 0.00 35.27 2.83
3625 5097 5.577945 CCACAATACATGCCTTTCATTTGTC 59.422 40.000 0.00 0.00 33.62 3.18
3626 5098 6.157904 CACAATACATGCCTTTCATTTGTCA 58.842 36.000 0.00 0.00 33.62 3.58
3627 5099 6.645827 CACAATACATGCCTTTCATTTGTCAA 59.354 34.615 0.00 0.00 33.62 3.18
3628 5100 7.171167 CACAATACATGCCTTTCATTTGTCAAA 59.829 33.333 0.00 0.00 33.62 2.69
3629 5101 7.714377 ACAATACATGCCTTTCATTTGTCAAAA 59.286 29.630 1.31 0.00 31.48 2.44
3630 5102 8.723311 CAATACATGCCTTTCATTTGTCAAAAT 58.277 29.630 1.31 0.00 36.39 1.82
3631 5103 9.941325 AATACATGCCTTTCATTTGTCAAAATA 57.059 25.926 1.31 0.00 34.14 1.40
3634 5106 9.590451 ACATGCCTTTCATTTGTCAAAATATAG 57.410 29.630 1.31 0.00 34.14 1.31
3635 5107 9.806203 CATGCCTTTCATTTGTCAAAATATAGA 57.194 29.630 1.31 0.00 34.14 1.98
3637 5109 9.806203 TGCCTTTCATTTGTCAAAATATAGATG 57.194 29.630 1.31 0.00 34.14 2.90
3638 5110 9.807649 GCCTTTCATTTGTCAAAATATAGATGT 57.192 29.630 1.31 0.00 34.14 3.06
3685 5157 9.874205 ATAGGTACATCCATTTTTGAACAAATG 57.126 29.630 0.00 0.04 41.86 2.32
3695 5167 8.200364 CATTTTTGAACAAATGGAAGTCAAGT 57.800 30.769 0.82 0.00 39.53 3.16
3696 5168 9.311916 CATTTTTGAACAAATGGAAGTCAAGTA 57.688 29.630 0.82 0.00 39.53 2.24
3698 5170 9.883142 TTTTTGAACAAATGGAAGTCAAGTATT 57.117 25.926 0.82 0.00 0.00 1.89
3699 5171 9.883142 TTTTGAACAAATGGAAGTCAAGTATTT 57.117 25.926 0.82 0.00 0.00 1.40
3700 5172 9.883142 TTTGAACAAATGGAAGTCAAGTATTTT 57.117 25.926 0.00 0.00 0.00 1.82
3701 5173 8.870160 TGAACAAATGGAAGTCAAGTATTTTG 57.130 30.769 0.00 0.00 0.00 2.44
3702 5174 7.925483 TGAACAAATGGAAGTCAAGTATTTTGG 59.075 33.333 0.00 0.00 29.41 3.28
3703 5175 7.595819 ACAAATGGAAGTCAAGTATTTTGGA 57.404 32.000 0.00 0.00 29.41 3.53
3704 5176 8.017418 ACAAATGGAAGTCAAGTATTTTGGAA 57.983 30.769 0.00 0.00 29.41 3.53
3705 5177 7.926018 ACAAATGGAAGTCAAGTATTTTGGAAC 59.074 33.333 0.00 0.00 29.41 3.62
3706 5178 5.682943 TGGAAGTCAAGTATTTTGGAACG 57.317 39.130 0.00 0.00 0.00 3.95
3707 5179 4.517453 TGGAAGTCAAGTATTTTGGAACGG 59.483 41.667 0.00 0.00 0.00 4.44
3708 5180 4.758165 GGAAGTCAAGTATTTTGGAACGGA 59.242 41.667 0.00 0.00 0.00 4.69
3709 5181 5.106673 GGAAGTCAAGTATTTTGGAACGGAG 60.107 44.000 0.00 0.00 0.00 4.63
3710 5182 5.223449 AGTCAAGTATTTTGGAACGGAGA 57.777 39.130 0.00 0.00 0.00 3.71
3711 5183 5.238583 AGTCAAGTATTTTGGAACGGAGAG 58.761 41.667 0.00 0.00 0.00 3.20
3751 5223 0.176219 TTCTCGGTCAACGGTGTTGT 59.824 50.000 0.00 0.00 44.45 3.32
3779 5251 1.066573 GGTCATCAGGTCAGGACTGTG 60.067 57.143 0.00 0.00 37.25 3.66
3829 5301 2.057137 TTTTGACTCTGCAAGTGCCT 57.943 45.000 6.31 0.00 38.74 4.75
3832 5304 1.342074 TGACTCTGCAAGTGCCTAGT 58.658 50.000 7.19 7.19 38.74 2.57
3859 5331 2.029838 ACAATCATTCTCCCTGCGAC 57.970 50.000 0.00 0.00 0.00 5.19
3906 5378 0.682532 TTGTTCTGCCCAGCACAACA 60.683 50.000 8.97 6.35 43.37 3.33
3914 5386 1.301244 CCAGCACAACAGACGAGCT 60.301 57.895 0.00 0.00 35.63 4.09
3922 5394 3.201494 CAGACGAGCTGGATCGGT 58.799 61.111 12.65 0.00 46.91 4.69
3933 5739 2.693069 CTGGATCGGTGCTTGATATCC 58.307 52.381 0.00 0.00 37.27 2.59
3960 5767 1.985473 ACAACTGAAGAAGCATGCCA 58.015 45.000 15.66 3.50 0.00 4.92
3968 5775 0.323178 AGAAGCATGCCACCCTTCAG 60.323 55.000 15.66 0.00 37.91 3.02
4004 5811 3.055602 AGAAAATGGCAGGAATCTTTGGC 60.056 43.478 0.00 5.28 40.02 4.52
4026 6049 3.871594 CACCTGCAAGCTACTGGTATTAC 59.128 47.826 15.19 0.00 37.26 1.89
4122 6147 8.798859 ACATTAGAGTCTCTTTTGTGCATATT 57.201 30.769 7.89 0.00 0.00 1.28
4124 6149 7.525688 TTAGAGTCTCTTTTGTGCATATTCG 57.474 36.000 7.89 0.00 0.00 3.34
4128 6153 6.373779 AGTCTCTTTTGTGCATATTCGTTTG 58.626 36.000 0.00 0.00 0.00 2.93
4143 6168 5.940603 TTCGTTTGTTTTGTGCTAACATG 57.059 34.783 0.00 0.00 35.60 3.21
4226 6251 2.359975 GCCGTTCCTTCACCTGGG 60.360 66.667 0.00 0.00 0.00 4.45
4233 6258 2.628178 GTTCCTTCACCTGGGGAAAAAG 59.372 50.000 13.27 4.86 40.26 2.27
4262 6287 3.855950 CGTCAATCCGTTAGTAACCTGAC 59.144 47.826 7.45 12.59 0.00 3.51
4270 6295 3.660865 GTTAGTAACCTGACAGTGGTGG 58.339 50.000 1.22 0.00 37.93 4.61
4308 6341 7.064609 GCACTAGTGACATATACAGCTTTCAAA 59.935 37.037 27.08 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.995003 TGTGCTACATATTTTTCCAGAATTTTT 57.005 25.926 0.00 0.00 0.00 1.94
29 30 9.807649 GAATGTGCTACATATTTTTCCAGAATT 57.192 29.630 2.80 0.00 37.97 2.17
30 31 8.970020 TGAATGTGCTACATATTTTTCCAGAAT 58.030 29.630 2.80 0.00 37.97 2.40
31 32 8.243426 GTGAATGTGCTACATATTTTTCCAGAA 58.757 33.333 2.80 0.00 37.97 3.02
32 33 7.392953 TGTGAATGTGCTACATATTTTTCCAGA 59.607 33.333 2.80 0.00 37.97 3.86
33 34 7.537715 TGTGAATGTGCTACATATTTTTCCAG 58.462 34.615 2.80 0.00 37.97 3.86
34 35 7.459795 TGTGAATGTGCTACATATTTTTCCA 57.540 32.000 2.80 0.00 37.97 3.53
43 44 9.955208 CATTATTGTTATGTGAATGTGCTACAT 57.045 29.630 0.00 0.00 41.31 2.29
44 45 8.955388 ACATTATTGTTATGTGAATGTGCTACA 58.045 29.630 0.00 0.00 38.85 2.74
47 48 9.955208 CATACATTATTGTTATGTGAATGTGCT 57.045 29.630 8.43 0.00 40.14 4.40
48 49 9.734620 ACATACATTATTGTTATGTGAATGTGC 57.265 29.630 8.43 0.00 40.14 4.57
103 104 9.283768 TGTCATTGTTGTATCTCAAACTATGTT 57.716 29.630 8.89 0.00 37.81 2.71
104 105 8.846943 TGTCATTGTTGTATCTCAAACTATGT 57.153 30.769 8.89 0.00 37.81 2.29
108 109 9.683069 GAATTTGTCATTGTTGTATCTCAAACT 57.317 29.630 0.00 0.00 37.81 2.66
109 110 9.462174 TGAATTTGTCATTGTTGTATCTCAAAC 57.538 29.630 0.00 0.00 37.81 2.93
111 112 9.462174 GTTGAATTTGTCATTGTTGTATCTCAA 57.538 29.630 0.00 0.00 35.70 3.02
112 113 8.628280 TGTTGAATTTGTCATTGTTGTATCTCA 58.372 29.630 0.00 0.00 35.70 3.27
113 114 9.630098 ATGTTGAATTTGTCATTGTTGTATCTC 57.370 29.630 0.00 0.00 35.70 2.75
114 115 9.985730 AATGTTGAATTTGTCATTGTTGTATCT 57.014 25.926 0.00 0.00 35.70 1.98
116 117 9.761504 TCAATGTTGAATTTGTCATTGTTGTAT 57.238 25.926 19.63 0.00 43.97 2.29
117 118 9.247126 CTCAATGTTGAATTTGTCATTGTTGTA 57.753 29.630 19.63 8.44 43.97 2.41
118 119 7.765360 ACTCAATGTTGAATTTGTCATTGTTGT 59.235 29.630 19.63 17.39 43.97 3.32
119 120 8.133754 ACTCAATGTTGAATTTGTCATTGTTG 57.866 30.769 19.63 17.02 43.97 3.33
120 121 9.467258 CTACTCAATGTTGAATTTGTCATTGTT 57.533 29.630 19.63 14.32 43.97 2.83
121 122 8.632679 ACTACTCAATGTTGAATTTGTCATTGT 58.367 29.630 19.63 11.05 43.97 2.71
124 125 9.283768 TGTACTACTCAATGTTGAATTTGTCAT 57.716 29.630 0.00 0.00 36.64 3.06
125 126 8.669946 TGTACTACTCAATGTTGAATTTGTCA 57.330 30.769 0.00 0.00 36.64 3.58
131 132 9.719355 TGTGTTATGTACTACTCAATGTTGAAT 57.281 29.630 0.00 0.00 36.64 2.57
132 133 9.549078 TTGTGTTATGTACTACTCAATGTTGAA 57.451 29.630 0.00 0.00 36.64 2.69
133 134 9.203421 CTTGTGTTATGTACTACTCAATGTTGA 57.797 33.333 0.00 0.00 35.57 3.18
134 135 8.988934 ACTTGTGTTATGTACTACTCAATGTTG 58.011 33.333 0.00 0.00 30.32 3.33
135 136 9.555727 AACTTGTGTTATGTACTACTCAATGTT 57.444 29.630 0.00 7.07 34.15 2.71
138 139 9.367444 GCTAACTTGTGTTATGTACTACTCAAT 57.633 33.333 0.00 0.00 37.92 2.57
139 140 8.582437 AGCTAACTTGTGTTATGTACTACTCAA 58.418 33.333 0.00 3.17 37.92 3.02
140 141 8.118976 AGCTAACTTGTGTTATGTACTACTCA 57.881 34.615 0.00 0.00 37.92 3.41
141 142 8.983307 AAGCTAACTTGTGTTATGTACTACTC 57.017 34.615 0.00 0.00 37.92 2.59
149 150 9.559958 CCAAATCTAAAGCTAACTTGTGTTATG 57.440 33.333 0.00 0.00 37.92 1.90
150 151 8.244113 GCCAAATCTAAAGCTAACTTGTGTTAT 58.756 33.333 0.00 0.00 37.92 1.89
151 152 7.447238 AGCCAAATCTAAAGCTAACTTGTGTTA 59.553 33.333 0.00 0.00 35.85 2.41
152 153 6.265422 AGCCAAATCTAAAGCTAACTTGTGTT 59.735 34.615 0.00 0.00 35.85 3.32
153 154 5.770162 AGCCAAATCTAAAGCTAACTTGTGT 59.230 36.000 0.00 0.00 35.85 3.72
154 155 6.072508 TGAGCCAAATCTAAAGCTAACTTGTG 60.073 38.462 0.00 0.00 35.85 3.33
155 156 6.003950 TGAGCCAAATCTAAAGCTAACTTGT 58.996 36.000 0.00 0.00 35.85 3.16
156 157 6.500684 TGAGCCAAATCTAAAGCTAACTTG 57.499 37.500 0.00 0.00 35.85 3.16
157 158 7.709149 AATGAGCCAAATCTAAAGCTAACTT 57.291 32.000 0.00 0.00 35.23 2.66
158 159 8.986929 ATAATGAGCCAAATCTAAAGCTAACT 57.013 30.769 0.00 0.00 35.23 2.24
159 160 8.840321 TGATAATGAGCCAAATCTAAAGCTAAC 58.160 33.333 0.00 0.00 35.23 2.34
160 161 8.978874 TGATAATGAGCCAAATCTAAAGCTAA 57.021 30.769 0.00 0.00 35.23 3.09
162 163 9.750783 ATATGATAATGAGCCAAATCTAAAGCT 57.249 29.630 0.00 0.00 38.56 3.74
168 169 9.529823 ACATCAATATGATAATGAGCCAAATCT 57.470 29.630 0.00 0.00 34.28 2.40
169 170 9.784680 GACATCAATATGATAATGAGCCAAATC 57.215 33.333 0.00 0.00 34.28 2.17
170 171 9.304335 TGACATCAATATGATAATGAGCCAAAT 57.696 29.630 0.00 0.00 34.28 2.32
171 172 8.694581 TGACATCAATATGATAATGAGCCAAA 57.305 30.769 0.00 0.00 34.28 3.28
172 173 8.694581 TTGACATCAATATGATAATGAGCCAA 57.305 30.769 0.00 0.00 34.28 4.52
173 174 8.694581 TTTGACATCAATATGATAATGAGCCA 57.305 30.769 0.00 0.00 34.28 4.75
202 203 9.436957 AACATTACTCGAGATACAAAAACTGAT 57.563 29.630 21.68 0.00 0.00 2.90
203 204 8.827177 AACATTACTCGAGATACAAAAACTGA 57.173 30.769 21.68 0.00 0.00 3.41
204 205 9.878599 AAAACATTACTCGAGATACAAAAACTG 57.121 29.630 21.68 5.30 0.00 3.16
205 206 9.878599 CAAAACATTACTCGAGATACAAAAACT 57.121 29.630 21.68 0.00 0.00 2.66
206 207 9.872757 TCAAAACATTACTCGAGATACAAAAAC 57.127 29.630 21.68 0.00 0.00 2.43
250 251 9.949174 GCAATAACATCAATGTATGTTGTCATA 57.051 29.630 15.95 2.77 46.77 2.15
251 252 7.922278 GGCAATAACATCAATGTATGTTGTCAT 59.078 33.333 15.95 4.86 46.77 3.06
252 253 7.094032 TGGCAATAACATCAATGTATGTTGTCA 60.094 33.333 15.95 13.58 46.77 3.58
253 254 7.257003 TGGCAATAACATCAATGTATGTTGTC 58.743 34.615 15.95 4.83 46.77 3.18
254 255 7.167924 TGGCAATAACATCAATGTATGTTGT 57.832 32.000 15.95 9.93 46.77 3.32
255 256 8.544597 CATTGGCAATAACATCAATGTATGTTG 58.455 33.333 13.23 4.01 46.77 3.33
262 263 6.971527 AACACATTGGCAATAACATCAATG 57.028 33.333 13.23 11.76 46.82 2.82
263 264 9.499479 TTTTAACACATTGGCAATAACATCAAT 57.501 25.926 13.23 0.00 0.00 2.57
264 265 8.893219 TTTTAACACATTGGCAATAACATCAA 57.107 26.923 13.23 0.00 0.00 2.57
265 266 8.893219 TTTTTAACACATTGGCAATAACATCA 57.107 26.923 13.23 0.00 0.00 3.07
310 311 7.085116 TCGGACGCATTAACACATTTTAAAAT 58.915 30.769 7.64 7.64 0.00 1.82
311 312 6.436261 TCGGACGCATTAACACATTTTAAAA 58.564 32.000 2.51 2.51 0.00 1.52
312 313 5.998553 TCGGACGCATTAACACATTTTAAA 58.001 33.333 0.00 0.00 0.00 1.52
313 314 5.608676 TCGGACGCATTAACACATTTTAA 57.391 34.783 0.00 0.00 0.00 1.52
314 315 5.122554 ACATCGGACGCATTAACACATTTTA 59.877 36.000 0.00 0.00 0.00 1.52
315 316 4.083003 ACATCGGACGCATTAACACATTTT 60.083 37.500 0.00 0.00 0.00 1.82
316 317 3.438781 ACATCGGACGCATTAACACATTT 59.561 39.130 0.00 0.00 0.00 2.32
317 318 3.006940 ACATCGGACGCATTAACACATT 58.993 40.909 0.00 0.00 0.00 2.71
318 319 2.627945 ACATCGGACGCATTAACACAT 58.372 42.857 0.00 0.00 0.00 3.21
319 320 2.087501 ACATCGGACGCATTAACACA 57.912 45.000 0.00 0.00 0.00 3.72
320 321 2.283351 GGTACATCGGACGCATTAACAC 59.717 50.000 0.00 0.00 0.00 3.32
321 322 2.542597 GGTACATCGGACGCATTAACA 58.457 47.619 0.00 0.00 0.00 2.41
322 323 1.519758 CGGTACATCGGACGCATTAAC 59.480 52.381 0.00 0.00 0.00 2.01
323 324 1.842720 CGGTACATCGGACGCATTAA 58.157 50.000 0.00 0.00 0.00 1.40
324 325 3.555401 CGGTACATCGGACGCATTA 57.445 52.632 0.00 0.00 0.00 1.90
325 326 4.412933 CGGTACATCGGACGCATT 57.587 55.556 0.00 0.00 0.00 3.56
333 334 0.526954 GTGGTGCTACCGGTACATCG 60.527 60.000 11.16 1.72 42.58 3.84
334 335 0.533491 TGTGGTGCTACCGGTACATC 59.467 55.000 11.16 14.38 42.58 3.06
335 336 0.978151 TTGTGGTGCTACCGGTACAT 59.022 50.000 11.16 0.00 42.58 2.29
336 337 0.319083 CTTGTGGTGCTACCGGTACA 59.681 55.000 11.16 11.30 42.58 2.90
337 338 1.017701 GCTTGTGGTGCTACCGGTAC 61.018 60.000 11.16 3.37 42.58 3.34
338 339 1.294138 GCTTGTGGTGCTACCGGTA 59.706 57.895 14.95 14.95 42.58 4.02
339 340 2.032071 GCTTGTGGTGCTACCGGT 59.968 61.111 13.98 13.98 42.58 5.28
340 341 2.031919 TGCTTGTGGTGCTACCGG 59.968 61.111 0.00 0.00 42.58 5.28
341 342 2.325082 GGTGCTTGTGGTGCTACCG 61.325 63.158 0.00 0.00 42.58 4.02
342 343 2.325082 CGGTGCTTGTGGTGCTACC 61.325 63.158 0.00 0.00 39.22 3.18
343 344 2.325082 CCGGTGCTTGTGGTGCTAC 61.325 63.158 0.00 0.00 0.00 3.58
344 345 2.031919 CCGGTGCTTGTGGTGCTA 59.968 61.111 0.00 0.00 0.00 3.49
345 346 4.189580 ACCGGTGCTTGTGGTGCT 62.190 61.111 6.12 0.00 33.91 4.40
346 347 3.964875 CACCGGTGCTTGTGGTGC 61.965 66.667 24.02 0.00 45.85 5.01
356 357 1.172180 ATGTTTCTGGTGCACCGGTG 61.172 55.000 37.57 30.66 43.01 4.94
357 358 0.467290 AATGTTTCTGGTGCACCGGT 60.467 50.000 37.57 20.21 43.01 5.28
358 359 0.240945 GAATGTTTCTGGTGCACCGG 59.759 55.000 35.06 35.06 43.86 5.28
359 360 1.238439 AGAATGTTTCTGGTGCACCG 58.762 50.000 30.07 23.48 38.91 4.94
360 361 2.029918 GGAAGAATGTTTCTGGTGCACC 60.030 50.000 29.67 29.67 40.59 5.01
361 362 2.622942 TGGAAGAATGTTTCTGGTGCAC 59.377 45.455 8.80 8.80 40.59 4.57
362 363 2.886523 CTGGAAGAATGTTTCTGGTGCA 59.113 45.455 0.00 0.00 40.59 4.57
363 364 3.149196 TCTGGAAGAATGTTTCTGGTGC 58.851 45.455 0.00 0.00 42.31 5.01
364 365 4.392940 ACTCTGGAAGAATGTTTCTGGTG 58.607 43.478 0.00 0.00 46.34 4.17
365 366 4.646572 GACTCTGGAAGAATGTTTCTGGT 58.353 43.478 0.00 0.00 46.34 4.00
366 367 3.681897 CGACTCTGGAAGAATGTTTCTGG 59.318 47.826 0.00 0.00 46.34 3.86
367 368 3.681897 CCGACTCTGGAAGAATGTTTCTG 59.318 47.826 0.00 0.00 46.34 3.02
368 369 3.866449 GCCGACTCTGGAAGAATGTTTCT 60.866 47.826 0.00 0.00 46.34 2.52
369 370 2.416893 GCCGACTCTGGAAGAATGTTTC 59.583 50.000 0.00 0.00 46.34 2.78
370 371 2.224523 TGCCGACTCTGGAAGAATGTTT 60.225 45.455 0.00 0.00 46.34 2.83
371 372 1.347707 TGCCGACTCTGGAAGAATGTT 59.652 47.619 0.00 0.00 46.34 2.71
372 373 0.976641 TGCCGACTCTGGAAGAATGT 59.023 50.000 0.00 0.00 46.34 2.71
373 374 2.208431 GATGCCGACTCTGGAAGAATG 58.792 52.381 0.00 0.00 46.34 2.67
374 375 1.202463 CGATGCCGACTCTGGAAGAAT 60.202 52.381 0.00 0.00 39.83 2.40
375 376 0.173481 CGATGCCGACTCTGGAAGAA 59.827 55.000 0.00 0.00 39.83 2.52
376 377 0.679960 TCGATGCCGACTCTGGAAGA 60.680 55.000 0.00 0.00 39.68 2.87
377 378 0.248825 CTCGATGCCGACTCTGGAAG 60.249 60.000 0.00 0.00 40.30 3.46
378 379 1.809869 CTCGATGCCGACTCTGGAA 59.190 57.895 0.00 0.00 40.30 3.53
379 380 2.775856 GCTCGATGCCGACTCTGGA 61.776 63.158 0.00 0.00 40.30 3.86
380 381 1.448119 TAGCTCGATGCCGACTCTGG 61.448 60.000 0.00 0.00 44.23 3.86
381 382 0.595588 ATAGCTCGATGCCGACTCTG 59.404 55.000 0.00 0.00 44.23 3.35
382 383 0.595588 CATAGCTCGATGCCGACTCT 59.404 55.000 0.00 0.00 44.23 3.24
383 384 1.006314 GCATAGCTCGATGCCGACTC 61.006 60.000 9.91 0.00 45.41 3.36
384 385 1.006805 GCATAGCTCGATGCCGACT 60.007 57.895 9.91 0.00 45.41 4.18
385 386 3.543548 GCATAGCTCGATGCCGAC 58.456 61.111 9.91 0.00 45.41 4.79
390 391 0.964700 TCCTCCTGCATAGCTCGATG 59.035 55.000 0.00 0.00 0.00 3.84
391 392 1.617850 CTTCCTCCTGCATAGCTCGAT 59.382 52.381 0.00 0.00 0.00 3.59
392 393 1.035923 CTTCCTCCTGCATAGCTCGA 58.964 55.000 0.00 0.00 0.00 4.04
393 394 1.035923 TCTTCCTCCTGCATAGCTCG 58.964 55.000 0.00 0.00 0.00 5.03
394 395 2.697751 TCTTCTTCCTCCTGCATAGCTC 59.302 50.000 0.00 0.00 0.00 4.09
395 396 2.433970 GTCTTCTTCCTCCTGCATAGCT 59.566 50.000 0.00 0.00 0.00 3.32
396 397 2.433970 AGTCTTCTTCCTCCTGCATAGC 59.566 50.000 0.00 0.00 0.00 2.97
397 398 4.692228 GAAGTCTTCTTCCTCCTGCATAG 58.308 47.826 5.27 0.00 42.85 2.23
398 399 3.131223 CGAAGTCTTCTTCCTCCTGCATA 59.869 47.826 10.81 0.00 45.02 3.14
399 400 2.093764 CGAAGTCTTCTTCCTCCTGCAT 60.094 50.000 10.81 0.00 45.02 3.96
400 401 1.273606 CGAAGTCTTCTTCCTCCTGCA 59.726 52.381 10.81 0.00 45.02 4.41
401 402 1.546476 TCGAAGTCTTCTTCCTCCTGC 59.454 52.381 10.81 0.00 45.02 4.85
402 403 2.558795 TGTCGAAGTCTTCTTCCTCCTG 59.441 50.000 10.81 0.00 45.02 3.86
403 404 2.559231 GTGTCGAAGTCTTCTTCCTCCT 59.441 50.000 10.81 0.00 45.02 3.69
404 405 2.352912 GGTGTCGAAGTCTTCTTCCTCC 60.353 54.545 10.81 5.10 45.02 4.30
405 406 2.352912 GGGTGTCGAAGTCTTCTTCCTC 60.353 54.545 10.81 0.23 45.02 3.71
406 407 1.619332 GGGTGTCGAAGTCTTCTTCCT 59.381 52.381 10.81 0.00 45.02 3.36
407 408 1.619332 AGGGTGTCGAAGTCTTCTTCC 59.381 52.381 10.81 7.19 45.02 3.46
408 409 2.296471 TGAGGGTGTCGAAGTCTTCTTC 59.704 50.000 10.81 4.38 44.55 2.87
409 410 2.317040 TGAGGGTGTCGAAGTCTTCTT 58.683 47.619 10.81 0.00 36.51 2.52
410 411 1.996798 TGAGGGTGTCGAAGTCTTCT 58.003 50.000 10.81 0.00 0.00 2.85
411 412 2.296471 TCTTGAGGGTGTCGAAGTCTTC 59.704 50.000 2.18 2.18 0.00 2.87
412 413 2.317040 TCTTGAGGGTGTCGAAGTCTT 58.683 47.619 0.00 0.00 0.00 3.01
413 414 1.996798 TCTTGAGGGTGTCGAAGTCT 58.003 50.000 0.00 0.00 0.00 3.24
414 415 2.814280 TTCTTGAGGGTGTCGAAGTC 57.186 50.000 0.00 0.00 0.00 3.01
415 416 3.771577 AATTCTTGAGGGTGTCGAAGT 57.228 42.857 0.00 0.00 0.00 3.01
416 417 4.065088 TCAAATTCTTGAGGGTGTCGAAG 58.935 43.478 0.00 0.00 36.62 3.79
417 418 4.079980 TCAAATTCTTGAGGGTGTCGAA 57.920 40.909 0.00 0.00 36.62 3.71
418 419 3.762407 TCAAATTCTTGAGGGTGTCGA 57.238 42.857 0.00 0.00 36.62 4.20
419 420 4.726416 CATTCAAATTCTTGAGGGTGTCG 58.274 43.478 0.00 0.00 42.48 4.35
420 421 4.219288 AGCATTCAAATTCTTGAGGGTGTC 59.781 41.667 0.00 0.00 42.48 3.67
421 422 4.154942 AGCATTCAAATTCTTGAGGGTGT 58.845 39.130 0.00 0.00 42.48 4.16
422 423 4.796038 AGCATTCAAATTCTTGAGGGTG 57.204 40.909 0.00 0.00 42.48 4.61
423 424 7.486407 AAATAGCATTCAAATTCTTGAGGGT 57.514 32.000 0.00 0.00 42.48 4.34
450 451 9.104965 CCTTACGAATACATCCATACAGAAAAA 57.895 33.333 0.00 0.00 0.00 1.94
451 452 8.479689 TCCTTACGAATACATCCATACAGAAAA 58.520 33.333 0.00 0.00 0.00 2.29
452 453 7.924412 GTCCTTACGAATACATCCATACAGAAA 59.076 37.037 0.00 0.00 0.00 2.52
453 454 7.431249 GTCCTTACGAATACATCCATACAGAA 58.569 38.462 0.00 0.00 0.00 3.02
454 455 6.015688 GGTCCTTACGAATACATCCATACAGA 60.016 42.308 0.00 0.00 0.00 3.41
455 456 6.015350 AGGTCCTTACGAATACATCCATACAG 60.015 42.308 0.00 0.00 0.00 2.74
456 457 5.836898 AGGTCCTTACGAATACATCCATACA 59.163 40.000 0.00 0.00 0.00 2.29
457 458 6.157211 CAGGTCCTTACGAATACATCCATAC 58.843 44.000 0.00 0.00 0.00 2.39
458 459 5.836898 ACAGGTCCTTACGAATACATCCATA 59.163 40.000 0.00 0.00 0.00 2.74
459 460 4.654262 ACAGGTCCTTACGAATACATCCAT 59.346 41.667 0.00 0.00 0.00 3.41
460 461 4.028131 ACAGGTCCTTACGAATACATCCA 58.972 43.478 0.00 0.00 0.00 3.41
461 462 4.098960 TCACAGGTCCTTACGAATACATCC 59.901 45.833 0.00 0.00 0.00 3.51
462 463 5.258456 TCACAGGTCCTTACGAATACATC 57.742 43.478 0.00 0.00 0.00 3.06
463 464 5.362717 TCATCACAGGTCCTTACGAATACAT 59.637 40.000 0.00 0.00 0.00 2.29
464 465 4.707934 TCATCACAGGTCCTTACGAATACA 59.292 41.667 0.00 0.00 0.00 2.29
465 466 5.258456 TCATCACAGGTCCTTACGAATAC 57.742 43.478 0.00 0.00 0.00 1.89
466 467 6.479972 AATCATCACAGGTCCTTACGAATA 57.520 37.500 0.00 0.00 0.00 1.75
467 468 5.359194 AATCATCACAGGTCCTTACGAAT 57.641 39.130 0.00 0.00 0.00 3.34
468 469 4.819105 AATCATCACAGGTCCTTACGAA 57.181 40.909 0.00 0.00 0.00 3.85
469 470 5.925506 TTAATCATCACAGGTCCTTACGA 57.074 39.130 0.00 0.00 0.00 3.43
470 471 7.207383 TGTATTAATCATCACAGGTCCTTACG 58.793 38.462 0.00 0.00 0.00 3.18
471 472 8.993121 CATGTATTAATCATCACAGGTCCTTAC 58.007 37.037 0.00 0.00 0.00 2.34
472 473 8.933653 TCATGTATTAATCATCACAGGTCCTTA 58.066 33.333 0.00 0.00 0.00 2.69
473 474 7.716998 GTCATGTATTAATCATCACAGGTCCTT 59.283 37.037 0.00 0.00 0.00 3.36
474 475 7.220030 GTCATGTATTAATCATCACAGGTCCT 58.780 38.462 0.00 0.00 0.00 3.85
475 476 6.428159 GGTCATGTATTAATCATCACAGGTCC 59.572 42.308 0.00 0.00 0.00 4.46
476 477 6.428159 GGGTCATGTATTAATCATCACAGGTC 59.572 42.308 0.00 0.00 0.00 3.85
477 478 6.299141 GGGTCATGTATTAATCATCACAGGT 58.701 40.000 0.00 0.00 0.00 4.00
478 479 5.409520 CGGGTCATGTATTAATCATCACAGG 59.590 44.000 0.00 0.00 0.00 4.00
479 480 5.106948 GCGGGTCATGTATTAATCATCACAG 60.107 44.000 0.00 0.00 0.00 3.66
480 481 4.754618 GCGGGTCATGTATTAATCATCACA 59.245 41.667 0.00 0.00 0.00 3.58
481 482 4.754618 TGCGGGTCATGTATTAATCATCAC 59.245 41.667 0.00 0.00 0.00 3.06
482 483 4.967036 TGCGGGTCATGTATTAATCATCA 58.033 39.130 0.00 0.00 0.00 3.07
483 484 5.940192 TTGCGGGTCATGTATTAATCATC 57.060 39.130 0.00 0.00 0.00 2.92
484 485 6.707440 TTTTGCGGGTCATGTATTAATCAT 57.293 33.333 0.00 0.00 0.00 2.45
485 486 6.516739 TTTTTGCGGGTCATGTATTAATCA 57.483 33.333 0.00 0.00 0.00 2.57
528 529 7.231115 TCACCATCATCATCTTTGTCTCAAAAA 59.769 33.333 0.00 0.00 0.00 1.94
529 530 6.716173 TCACCATCATCATCTTTGTCTCAAAA 59.284 34.615 0.00 0.00 0.00 2.44
530 531 6.240145 TCACCATCATCATCTTTGTCTCAAA 58.760 36.000 0.00 0.00 0.00 2.69
531 532 5.807909 TCACCATCATCATCTTTGTCTCAA 58.192 37.500 0.00 0.00 0.00 3.02
532 533 5.425196 TCACCATCATCATCTTTGTCTCA 57.575 39.130 0.00 0.00 0.00 3.27
533 534 6.939132 AATCACCATCATCATCTTTGTCTC 57.061 37.500 0.00 0.00 0.00 3.36
534 535 8.991783 ATTAATCACCATCATCATCTTTGTCT 57.008 30.769 0.00 0.00 0.00 3.41
536 537 9.631257 TGTATTAATCACCATCATCATCTTTGT 57.369 29.630 0.00 0.00 0.00 2.83
539 540 9.239551 CCATGTATTAATCACCATCATCATCTT 57.760 33.333 0.00 0.00 0.00 2.40
540 541 7.338703 GCCATGTATTAATCACCATCATCATCT 59.661 37.037 0.00 0.00 0.00 2.90
541 542 7.338703 AGCCATGTATTAATCACCATCATCATC 59.661 37.037 0.00 0.00 0.00 2.92
542 543 7.179966 AGCCATGTATTAATCACCATCATCAT 58.820 34.615 0.00 0.00 0.00 2.45
543 544 6.545567 AGCCATGTATTAATCACCATCATCA 58.454 36.000 0.00 0.00 0.00 3.07
544 545 7.458409 AAGCCATGTATTAATCACCATCATC 57.542 36.000 0.00 0.00 0.00 2.92
545 546 7.613022 CCTAAGCCATGTATTAATCACCATCAT 59.387 37.037 0.00 0.00 0.00 2.45
546 547 6.942005 CCTAAGCCATGTATTAATCACCATCA 59.058 38.462 0.00 0.00 0.00 3.07
547 548 6.127897 GCCTAAGCCATGTATTAATCACCATC 60.128 42.308 0.00 0.00 0.00 3.51
548 549 5.711976 GCCTAAGCCATGTATTAATCACCAT 59.288 40.000 0.00 0.00 0.00 3.55
549 550 5.070001 GCCTAAGCCATGTATTAATCACCA 58.930 41.667 0.00 0.00 0.00 4.17
550 551 5.629079 GCCTAAGCCATGTATTAATCACC 57.371 43.478 0.00 0.00 0.00 4.02
590 591 2.119029 GGGATAAAGCCGGCACACC 61.119 63.158 31.54 22.16 0.00 4.16
591 592 0.179468 TAGGGATAAAGCCGGCACAC 59.821 55.000 31.54 15.01 0.00 3.82
592 593 0.913205 TTAGGGATAAAGCCGGCACA 59.087 50.000 31.54 13.65 0.00 4.57
724 728 4.447389 GCTGTGTGAAGAAGTTTCTCTCTC 59.553 45.833 0.00 0.00 36.28 3.20
725 729 4.100808 AGCTGTGTGAAGAAGTTTCTCTCT 59.899 41.667 0.00 0.00 36.28 3.10
726 730 4.376146 AGCTGTGTGAAGAAGTTTCTCTC 58.624 43.478 0.00 0.00 36.28 3.20
727 731 4.141846 TGAGCTGTGTGAAGAAGTTTCTCT 60.142 41.667 0.00 0.00 36.28 3.10
728 732 4.122776 TGAGCTGTGTGAAGAAGTTTCTC 58.877 43.478 0.00 0.00 36.28 2.87
780 825 2.851104 CGTCGCCGGTTGTTTCTC 59.149 61.111 1.90 0.00 0.00 2.87
831 876 2.490685 GGGGAGAAGAGTCGTCGC 59.509 66.667 1.28 1.28 0.00 5.19
852 897 0.178973 TCAATAGATCGCGAGGGGGA 60.179 55.000 16.66 4.38 39.66 4.81
855 900 3.802613 CCTCAATAGATCGCGAGGG 57.197 57.895 16.66 0.00 41.20 4.30
857 902 2.920227 GCTCACCTCAATAGATCGCGAG 60.920 54.545 16.66 0.00 0.00 5.03
858 903 1.001268 GCTCACCTCAATAGATCGCGA 60.001 52.381 13.09 13.09 0.00 5.87
859 904 1.413382 GCTCACCTCAATAGATCGCG 58.587 55.000 0.00 0.00 0.00 5.87
860 905 1.342819 AGGCTCACCTCAATAGATCGC 59.657 52.381 0.00 0.00 46.34 4.58
912 957 2.442126 GGGTTTAATCCCGGGAGAAGAT 59.558 50.000 30.42 8.85 37.93 2.40
971 1016 4.973168 TCCTCAGCTGACAAGTAAATGTT 58.027 39.130 13.74 0.00 32.57 2.71
1010 1067 1.829222 ACCGCCGAAGAATCTCCTTAA 59.171 47.619 0.00 0.00 0.00 1.85
1023 1080 0.108520 GTGGATTGTCTTACCGCCGA 60.109 55.000 0.00 0.00 0.00 5.54
1061 1118 2.806434 TGAAATGTGGGGATGGTCAAG 58.194 47.619 0.00 0.00 0.00 3.02
1114 1172 6.020281 TCGTTGCAACAAACAACATCAATAAC 60.020 34.615 28.01 0.00 46.14 1.89
1119 1185 3.175152 GTCGTTGCAACAAACAACATCA 58.825 40.909 28.01 0.00 46.14 3.07
1145 1211 8.454106 CAATGGACCAATTTCTTCAAGTACTAG 58.546 37.037 0.00 0.00 0.00 2.57
1150 1216 4.344679 TGCAATGGACCAATTTCTTCAAGT 59.655 37.500 0.00 0.00 0.00 3.16
1151 1217 4.885413 TGCAATGGACCAATTTCTTCAAG 58.115 39.130 0.00 0.00 0.00 3.02
1152 1218 4.952071 TGCAATGGACCAATTTCTTCAA 57.048 36.364 0.00 0.00 0.00 2.69
1153 1219 5.011840 TCAATGCAATGGACCAATTTCTTCA 59.988 36.000 0.00 0.00 0.00 3.02
1154 1220 5.349543 GTCAATGCAATGGACCAATTTCTTC 59.650 40.000 0.00 0.00 41.61 2.87
1164 1235 0.799534 GCAGCGTCAATGCAATGGAC 60.800 55.000 1.05 3.92 44.08 4.02
1274 1363 1.077716 AAGCACCTTGGATACCGCC 60.078 57.895 0.00 0.00 0.00 6.13
1505 1609 1.983119 CTGGGGGCTGAGGCGAAATA 61.983 60.000 0.00 0.00 39.81 1.40
1718 1825 2.038557 AGTGAACATGTGGTACCTGGAC 59.961 50.000 14.36 3.48 0.00 4.02
1738 1845 6.054295 CCATCTTCTTTGGAGAGGATTGTAG 58.946 44.000 0.00 0.00 43.82 2.74
1782 1889 1.284785 CCCCTCCACCAACATGTACAT 59.715 52.381 1.41 1.41 0.00 2.29
1868 1975 5.483231 AGGGATATGTGTGATAGATGAGGTG 59.517 44.000 0.00 0.00 0.00 4.00
1879 1986 1.412710 GCGGAAGAGGGATATGTGTGA 59.587 52.381 0.00 0.00 0.00 3.58
1886 1993 0.178068 GCAACAGCGGAAGAGGGATA 59.822 55.000 0.00 0.00 0.00 2.59
2334 3499 1.729284 TTCTTTAACGGCGTCCCATC 58.271 50.000 15.17 0.00 0.00 3.51
2364 3529 6.064060 TCATCATAAAGGGATGGACATCAAC 58.936 40.000 13.72 6.42 41.89 3.18
2378 3543 3.705579 TGGGTGGCCAAATCATCATAAAG 59.294 43.478 7.24 0.00 0.00 1.85
2636 4009 7.537596 TTACAGGATTGATTGGTTTGTGATT 57.462 32.000 0.00 0.00 0.00 2.57
2703 4076 5.424252 TGAGGTTCACAGTATAAAGGTAGGG 59.576 44.000 0.00 0.00 0.00 3.53
2827 4204 8.925161 TTGTGTTTAAGAAAAAGAATCCACTG 57.075 30.769 0.00 0.00 0.00 3.66
2861 4238 5.581126 ACATACCTGCCATGTAAAATGTG 57.419 39.130 0.00 0.00 34.88 3.21
2959 4336 0.376852 TCTGACACACAAGCGCAAAC 59.623 50.000 11.47 0.00 0.00 2.93
2964 4341 2.545526 AGAAATGTCTGACACACAAGCG 59.454 45.455 13.50 0.00 38.04 4.68
3009 4386 8.906867 CAGACCAACATATTTCCATTTCAGTAT 58.093 33.333 0.00 0.00 0.00 2.12
3101 4483 8.092068 ACATGCATTCAGAAATCAAAAGAATGA 58.908 29.630 15.30 3.82 45.04 2.57
3157 4539 9.193806 AGAGGTTATTCAGCATCATAACATTTT 57.806 29.630 11.72 0.00 37.53 1.82
3158 4540 8.757982 AGAGGTTATTCAGCATCATAACATTT 57.242 30.769 11.72 1.17 37.53 2.32
3159 4541 9.499479 CTAGAGGTTATTCAGCATCATAACATT 57.501 33.333 11.72 2.88 37.53 2.71
3160 4542 8.654997 ACTAGAGGTTATTCAGCATCATAACAT 58.345 33.333 0.00 6.55 37.53 2.71
3161 4543 8.023021 ACTAGAGGTTATTCAGCATCATAACA 57.977 34.615 0.00 0.00 37.53 2.41
3177 4559 3.794971 AGGGTCAGGATAGACTAGAGGTT 59.205 47.826 0.00 0.00 38.57 3.50
3185 4567 2.962421 CAGAGGAAGGGTCAGGATAGAC 59.038 54.545 0.00 0.00 37.80 2.59
3196 4578 3.149981 GTTGAAGGAAACAGAGGAAGGG 58.850 50.000 0.00 0.00 0.00 3.95
3220 4602 2.248248 TCCTCCTTCACATGTCGTTCT 58.752 47.619 0.00 0.00 0.00 3.01
3226 4608 4.560739 TCCTGATATCCTCCTTCACATGT 58.439 43.478 0.00 0.00 0.00 3.21
3299 4687 3.000322 CGAACTGCTACTAAGGAAATGCG 60.000 47.826 0.00 0.00 0.00 4.73
3413 4801 6.036083 CGTCTTCATGAAACCAATATCTCGTT 59.964 38.462 9.88 0.00 0.00 3.85
3437 4826 2.315925 AACATGCATACAGGGAGTCG 57.684 50.000 0.00 0.00 0.00 4.18
3463 4932 3.937079 TGCAAGTGAATCAGTCAGCATAG 59.063 43.478 12.23 0.00 36.74 2.23
3477 4946 2.809174 CCGCGACGATGCAAGTGA 60.809 61.111 8.23 0.00 34.15 3.41
3532 5001 4.811557 GCTACTACACCTTCCTGCAAATAG 59.188 45.833 0.00 0.00 0.00 1.73
3588 5060 4.367166 TGTATTGTGGAATGGAGGGAGTA 58.633 43.478 0.00 0.00 0.00 2.59
3589 5061 3.189606 TGTATTGTGGAATGGAGGGAGT 58.810 45.455 0.00 0.00 0.00 3.85
3590 5062 3.931907 TGTATTGTGGAATGGAGGGAG 57.068 47.619 0.00 0.00 0.00 4.30
3591 5063 3.688126 GCATGTATTGTGGAATGGAGGGA 60.688 47.826 0.00 0.00 0.00 4.20
3592 5064 2.624838 GCATGTATTGTGGAATGGAGGG 59.375 50.000 0.00 0.00 0.00 4.30
3593 5065 2.624838 GGCATGTATTGTGGAATGGAGG 59.375 50.000 0.00 0.00 0.00 4.30
3594 5066 3.559069 AGGCATGTATTGTGGAATGGAG 58.441 45.455 0.00 0.00 0.00 3.86
3595 5067 3.668141 AGGCATGTATTGTGGAATGGA 57.332 42.857 0.00 0.00 0.00 3.41
3596 5068 4.160065 TGAAAGGCATGTATTGTGGAATGG 59.840 41.667 0.00 0.00 0.00 3.16
3597 5069 5.327616 TGAAAGGCATGTATTGTGGAATG 57.672 39.130 0.00 0.00 0.00 2.67
3598 5070 6.549433 AATGAAAGGCATGTATTGTGGAAT 57.451 33.333 0.00 0.00 37.28 3.01
3599 5071 5.999205 AATGAAAGGCATGTATTGTGGAA 57.001 34.783 0.00 0.00 37.28 3.53
3600 5072 5.245751 ACAAATGAAAGGCATGTATTGTGGA 59.754 36.000 0.00 0.00 35.32 4.02
3601 5073 5.481105 ACAAATGAAAGGCATGTATTGTGG 58.519 37.500 0.00 0.00 35.32 4.17
3602 5074 6.157904 TGACAAATGAAAGGCATGTATTGTG 58.842 36.000 0.00 0.00 36.24 3.33
3603 5075 6.343716 TGACAAATGAAAGGCATGTATTGT 57.656 33.333 0.00 0.00 37.87 2.71
3604 5076 7.655236 TTTGACAAATGAAAGGCATGTATTG 57.345 32.000 0.00 0.00 37.28 1.90
3605 5077 8.851541 ATTTTGACAAATGAAAGGCATGTATT 57.148 26.923 0.50 0.00 37.28 1.89
3608 5080 9.590451 CTATATTTTGACAAATGAAAGGCATGT 57.410 29.630 0.50 0.00 37.28 3.21
3609 5081 9.806203 TCTATATTTTGACAAATGAAAGGCATG 57.194 29.630 0.50 0.00 37.28 4.06
3611 5083 9.806203 CATCTATATTTTGACAAATGAAAGGCA 57.194 29.630 0.50 0.00 34.29 4.75
3612 5084 9.807649 ACATCTATATTTTGACAAATGAAAGGC 57.192 29.630 0.50 0.00 34.29 4.35
3659 5131 9.874205 CATTTGTTCAAAAATGGATGTACCTAT 57.126 29.630 2.11 0.00 41.71 2.57
3670 5142 8.200364 ACTTGACTTCCATTTGTTCAAAAATG 57.800 30.769 2.11 3.25 43.94 2.32
3672 5144 9.883142 AATACTTGACTTCCATTTGTTCAAAAA 57.117 25.926 2.11 0.00 0.00 1.94
3673 5145 9.883142 AAATACTTGACTTCCATTTGTTCAAAA 57.117 25.926 2.11 0.00 0.00 2.44
3674 5146 9.883142 AAAATACTTGACTTCCATTTGTTCAAA 57.117 25.926 0.44 0.44 0.00 2.69
3675 5147 9.311916 CAAAATACTTGACTTCCATTTGTTCAA 57.688 29.630 0.00 0.00 0.00 2.69
3676 5148 7.925483 CCAAAATACTTGACTTCCATTTGTTCA 59.075 33.333 0.00 0.00 0.00 3.18
3677 5149 8.141268 TCCAAAATACTTGACTTCCATTTGTTC 58.859 33.333 0.00 0.00 0.00 3.18
3678 5150 8.017418 TCCAAAATACTTGACTTCCATTTGTT 57.983 30.769 0.00 0.00 0.00 2.83
3679 5151 7.595819 TCCAAAATACTTGACTTCCATTTGT 57.404 32.000 0.00 0.00 0.00 2.83
3680 5152 7.114811 CGTTCCAAAATACTTGACTTCCATTTG 59.885 37.037 0.00 0.00 0.00 2.32
3681 5153 7.145323 CGTTCCAAAATACTTGACTTCCATTT 58.855 34.615 0.00 0.00 0.00 2.32
3682 5154 6.294508 CCGTTCCAAAATACTTGACTTCCATT 60.295 38.462 0.00 0.00 0.00 3.16
3683 5155 5.183140 CCGTTCCAAAATACTTGACTTCCAT 59.817 40.000 0.00 0.00 0.00 3.41
3684 5156 4.517453 CCGTTCCAAAATACTTGACTTCCA 59.483 41.667 0.00 0.00 0.00 3.53
3685 5157 4.758165 TCCGTTCCAAAATACTTGACTTCC 59.242 41.667 0.00 0.00 0.00 3.46
3686 5158 5.699458 TCTCCGTTCCAAAATACTTGACTTC 59.301 40.000 0.00 0.00 0.00 3.01
3687 5159 5.617252 TCTCCGTTCCAAAATACTTGACTT 58.383 37.500 0.00 0.00 0.00 3.01
3688 5160 5.221661 ACTCTCCGTTCCAAAATACTTGACT 60.222 40.000 0.00 0.00 0.00 3.41
3689 5161 4.995487 ACTCTCCGTTCCAAAATACTTGAC 59.005 41.667 0.00 0.00 0.00 3.18
3690 5162 5.223449 ACTCTCCGTTCCAAAATACTTGA 57.777 39.130 0.00 0.00 0.00 3.02
3691 5163 6.164176 ACTACTCTCCGTTCCAAAATACTTG 58.836 40.000 0.00 0.00 0.00 3.16
3692 5164 6.356186 ACTACTCTCCGTTCCAAAATACTT 57.644 37.500 0.00 0.00 0.00 2.24
3693 5165 5.997384 ACTACTCTCCGTTCCAAAATACT 57.003 39.130 0.00 0.00 0.00 2.12
3694 5166 7.172019 TGAAAACTACTCTCCGTTCCAAAATAC 59.828 37.037 0.00 0.00 0.00 1.89
3695 5167 7.218614 TGAAAACTACTCTCCGTTCCAAAATA 58.781 34.615 0.00 0.00 0.00 1.40
3696 5168 6.059484 TGAAAACTACTCTCCGTTCCAAAAT 58.941 36.000 0.00 0.00 0.00 1.82
3697 5169 5.430007 TGAAAACTACTCTCCGTTCCAAAA 58.570 37.500 0.00 0.00 0.00 2.44
3698 5170 5.026038 TGAAAACTACTCTCCGTTCCAAA 57.974 39.130 0.00 0.00 0.00 3.28
3699 5171 4.675976 TGAAAACTACTCTCCGTTCCAA 57.324 40.909 0.00 0.00 0.00 3.53
3700 5172 4.322499 GGATGAAAACTACTCTCCGTTCCA 60.322 45.833 0.00 0.00 0.00 3.53
3701 5173 4.182339 GGATGAAAACTACTCTCCGTTCC 58.818 47.826 0.00 0.00 0.00 3.62
3702 5174 3.858238 CGGATGAAAACTACTCTCCGTTC 59.142 47.826 0.00 0.00 40.47 3.95
3703 5175 3.846360 CGGATGAAAACTACTCTCCGTT 58.154 45.455 0.00 0.00 40.47 4.44
3704 5176 3.505464 CGGATGAAAACTACTCTCCGT 57.495 47.619 0.00 0.00 40.47 4.69
3705 5177 6.076490 TTCAACGGATGAAAACTACTCTCCG 61.076 44.000 7.21 7.21 44.94 4.63
3706 5178 4.817517 TCAACGGATGAAAACTACTCTCC 58.182 43.478 0.00 0.00 34.30 3.71
3751 5223 1.967779 TGACCTGATGACCGAGAACAA 59.032 47.619 0.00 0.00 0.00 2.83
3779 5251 3.066380 CCACAAAAGGCATTAGTTTGGC 58.934 45.455 0.00 0.00 42.18 4.52
3829 5301 7.004086 AGGGAGAATGATTGTTTGTTCAACTA 58.996 34.615 0.00 0.00 36.21 2.24
3832 5304 5.509501 GCAGGGAGAATGATTGTTTGTTCAA 60.510 40.000 0.00 0.00 0.00 2.69
3870 5342 6.533367 GCAGAACAAAACAAAACCAGATAACA 59.467 34.615 0.00 0.00 0.00 2.41
3906 5378 3.069980 GCACCGATCCAGCTCGTCT 62.070 63.158 0.00 0.00 36.93 4.18
3914 5386 2.037641 CAGGATATCAAGCACCGATCCA 59.962 50.000 4.83 0.00 38.87 3.41
3915 5387 2.300152 TCAGGATATCAAGCACCGATCC 59.700 50.000 4.83 0.00 37.01 3.36
3916 5388 3.667497 TCAGGATATCAAGCACCGATC 57.333 47.619 4.83 0.00 0.00 3.69
3918 5390 2.037641 CCATCAGGATATCAAGCACCGA 59.962 50.000 4.83 0.00 36.89 4.69
3919 5391 2.224378 ACCATCAGGATATCAAGCACCG 60.224 50.000 4.83 0.00 38.69 4.94
3920 5392 3.498774 ACCATCAGGATATCAAGCACC 57.501 47.619 4.83 0.00 38.69 5.01
3921 5393 4.960938 TGTACCATCAGGATATCAAGCAC 58.039 43.478 4.83 0.00 38.69 4.40
3922 5394 5.130975 AGTTGTACCATCAGGATATCAAGCA 59.869 40.000 4.83 0.00 38.69 3.91
3933 5739 4.318332 TGCTTCTTCAGTTGTACCATCAG 58.682 43.478 0.00 0.00 0.00 2.90
3960 5767 1.599047 CTCATGGCGTCTGAAGGGT 59.401 57.895 0.00 0.00 0.00 4.34
4004 5811 2.698855 ATACCAGTAGCTTGCAGGTG 57.301 50.000 12.97 0.00 33.91 4.00
4026 6049 4.481930 TTACAGCACATCGGAAAACAAG 57.518 40.909 0.00 0.00 0.00 3.16
4122 6147 5.065346 TCTCATGTTAGCACAAAACAAACGA 59.935 36.000 0.00 0.00 40.05 3.85
4124 6149 7.391016 GTTTCTCATGTTAGCACAAAACAAAC 58.609 34.615 0.00 0.00 40.05 2.93
4128 6153 4.982295 GGGTTTCTCATGTTAGCACAAAAC 59.018 41.667 0.00 0.00 36.16 2.43
4143 6168 0.971386 TCAGTGTACCCGGGTTTCTC 59.029 55.000 35.42 23.90 0.00 2.87
4181 6206 2.479560 GCAGTTGTTGGTGAGTTTGTCC 60.480 50.000 0.00 0.00 0.00 4.02
4226 6251 3.184379 GGATTGACGCTTTTGCTTTTTCC 59.816 43.478 0.00 0.00 44.80 3.13
4233 6258 2.095919 ACTAACGGATTGACGCTTTTGC 60.096 45.455 0.00 0.00 43.23 3.68
4262 6287 3.834732 GTAGTGCCTACCACCACTG 57.165 57.895 3.73 0.00 45.83 3.66
4270 6295 1.101331 ACTAGTGCGGTAGTGCCTAC 58.899 55.000 0.00 4.33 36.33 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.