Multiple sequence alignment - TraesCS1D01G065600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G065600 chr1D 100.000 9511 0 0 1 9511 47318419 47308909 0.000000e+00 17564.0
1 TraesCS1D01G065600 chr1D 83.836 1027 127 24 4399 5394 46635726 46634708 0.000000e+00 941.0
2 TraesCS1D01G065600 chr1D 88.759 685 72 4 63 746 46640439 46639759 0.000000e+00 833.0
3 TraesCS1D01G065600 chr1D 74.824 1561 291 69 6130 7630 46634126 46632608 6.310000e-171 612.0
4 TraesCS1D01G065600 chr1D 81.347 193 32 4 4202 4392 46635960 46635770 4.600000e-33 154.0
5 TraesCS1D01G065600 chr1D 98.387 62 1 0 4 65 46641889 46641828 1.010000e-19 110.0
6 TraesCS1D01G065600 chr1D 100.000 56 0 0 3985 4040 51879980 51880035 4.700000e-18 104.0
7 TraesCS1D01G065600 chr1D 100.000 56 0 0 3985 4040 254404206 254404151 4.700000e-18 104.0
8 TraesCS1D01G065600 chr1D 98.246 57 1 0 3932 3988 254532250 254532194 6.080000e-17 100.0
9 TraesCS1D01G065600 chr1D 98.246 57 1 0 3932 3988 400966126 400966182 6.080000e-17 100.0
10 TraesCS1D01G065600 chr1D 88.889 54 4 2 7907 7960 361353551 361353602 2.220000e-06 65.8
11 TraesCS1D01G065600 chr1B 98.347 3811 56 4 4041 7848 67019200 67015394 0.000000e+00 6682.0
12 TraesCS1D01G065600 chr1B 96.874 3935 87 10 4 3927 67023125 67019216 0.000000e+00 6553.0
13 TraesCS1D01G065600 chr1B 96.003 1176 37 5 8110 9284 67015399 67014233 0.000000e+00 1903.0
14 TraesCS1D01G065600 chr1B 90.960 177 13 3 5388 5562 669710794 669710619 1.600000e-57 235.0
15 TraesCS1D01G065600 chr1B 96.842 95 3 0 7976 8070 400184533 400184627 9.890000e-35 159.0
16 TraesCS1D01G065600 chr1B 96.512 86 3 0 9426 9511 67014068 67013983 9.960000e-30 143.0
17 TraesCS1D01G065600 chr1B 94.030 67 4 0 9332 9398 67014234 67014168 1.690000e-17 102.0
18 TraesCS1D01G065600 chr1B 93.878 49 1 2 7911 7959 139673432 139673478 1.320000e-08 73.1
19 TraesCS1D01G065600 chr1B 100.000 32 0 0 9365 9396 535690989 535690958 1.030000e-04 60.2
20 TraesCS1D01G065600 chr1A 96.770 3963 73 19 4 3927 47194431 47190485 0.000000e+00 6558.0
21 TraesCS1D01G065600 chr1A 97.433 1831 34 6 4041 5864 47190469 47188645 0.000000e+00 3109.0
22 TraesCS1D01G065600 chr1A 92.916 2047 104 16 5904 7925 47188644 47186614 0.000000e+00 2939.0
23 TraesCS1D01G065600 chr1A 94.576 1014 38 8 8074 9074 47186581 47185572 0.000000e+00 1552.0
24 TraesCS1D01G065600 chr1A 96.646 328 7 1 9075 9398 47185335 47185008 8.400000e-150 542.0
25 TraesCS1D01G065600 chr1A 92.121 165 11 2 5388 5551 319444312 319444149 2.070000e-56 231.0
26 TraesCS1D01G065600 chr1A 96.970 66 2 0 9446 9511 47181889 47181824 2.810000e-20 111.0
27 TraesCS1D01G065600 chr2B 91.477 176 13 2 5388 5562 382088766 382088940 3.430000e-59 241.0
28 TraesCS1D01G065600 chr2B 95.522 67 1 2 3975 4040 83488548 83488613 1.310000e-18 106.0
29 TraesCS1D01G065600 chr6A 90.449 178 13 4 5388 5562 22909297 22909473 2.070000e-56 231.0
30 TraesCS1D01G065600 chr6A 89.888 178 14 4 5388 5562 600874100 600873924 9.610000e-55 226.0
31 TraesCS1D01G065600 chr6A 88.158 76 7 2 9429 9503 608737835 608737761 1.320000e-13 89.8
32 TraesCS1D01G065600 chr6A 100.000 33 0 0 9364 9396 16617892 16617924 2.870000e-05 62.1
33 TraesCS1D01G065600 chr3B 89.888 178 14 4 5388 5562 532192744 532192568 9.610000e-55 226.0
34 TraesCS1D01G065600 chr3B 92.523 107 5 2 7966 8069 689513468 689513362 5.950000e-32 150.0
35 TraesCS1D01G065600 chr3B 87.805 82 10 0 9426 9507 527905688 527905769 7.860000e-16 97.1
36 TraesCS1D01G065600 chr3B 92.157 51 1 3 7909 7959 523562128 523562081 1.710000e-07 69.4
37 TraesCS1D01G065600 chr6D 89.888 178 13 5 5388 5562 430878090 430878265 3.460000e-54 224.0
38 TraesCS1D01G065600 chr6D 100.000 56 0 0 3985 4040 45513476 45513531 4.700000e-18 104.0
39 TraesCS1D01G065600 chr6D 86.364 88 6 5 9426 9511 434469964 434469881 3.660000e-14 91.6
40 TraesCS1D01G065600 chr6D 100.000 32 0 0 9365 9396 414268877 414268846 1.030000e-04 60.2
41 TraesCS1D01G065600 chr6D 97.143 35 1 0 9363 9397 427634024 427634058 1.030000e-04 60.2
42 TraesCS1D01G065600 chr7B 98.901 91 1 0 7972 8062 489323073 489323163 7.640000e-36 163.0
43 TraesCS1D01G065600 chr2A 98.901 91 1 0 7971 8061 622029583 622029673 7.640000e-36 163.0
44 TraesCS1D01G065600 chr5D 98.889 90 1 0 7974 8063 253048774 253048863 2.750000e-35 161.0
45 TraesCS1D01G065600 chr5D 96.842 95 3 0 7976 8070 86401036 86400942 9.890000e-35 159.0
46 TraesCS1D01G065600 chr5D 100.000 56 0 0 3985 4040 6182853 6182908 4.700000e-18 104.0
47 TraesCS1D01G065600 chr5D 100.000 56 0 0 3985 4040 120797961 120797906 4.700000e-18 104.0
48 TraesCS1D01G065600 chr5D 98.246 57 1 0 3932 3988 128182435 128182491 6.080000e-17 100.0
49 TraesCS1D01G065600 chr5D 98.246 57 1 0 3932 3988 503252433 503252377 6.080000e-17 100.0
50 TraesCS1D01G065600 chr7D 97.826 92 2 0 7970 8061 264138455 264138546 9.890000e-35 159.0
51 TraesCS1D01G065600 chr7D 97.222 36 1 0 9363 9398 619404126 619404161 2.870000e-05 62.1
52 TraesCS1D01G065600 chrUn 94.175 103 4 2 7976 8076 37289250 37289148 1.280000e-33 156.0
53 TraesCS1D01G065600 chrUn 94.175 103 4 2 7976 8076 37292426 37292324 1.280000e-33 156.0
54 TraesCS1D01G065600 chrUn 100.000 56 0 0 3985 4040 455046722 455046777 4.700000e-18 104.0
55 TraesCS1D01G065600 chrUn 100.000 56 0 0 3985 4040 456637925 456637870 4.700000e-18 104.0
56 TraesCS1D01G065600 chrUn 98.246 57 1 0 3932 3988 53262772 53262828 6.080000e-17 100.0
57 TraesCS1D01G065600 chrUn 98.246 57 1 0 3932 3988 354744160 354744216 6.080000e-17 100.0
58 TraesCS1D01G065600 chrUn 98.246 57 1 0 3932 3988 363863874 363863930 6.080000e-17 100.0
59 TraesCS1D01G065600 chrUn 98.246 57 1 0 3932 3988 441371496 441371440 6.080000e-17 100.0
60 TraesCS1D01G065600 chr4D 90.805 87 6 2 9426 9511 28424662 28424747 2.170000e-21 115.0
61 TraesCS1D01G065600 chr4D 95.652 46 0 2 7915 7960 310388726 310388769 1.320000e-08 73.1
62 TraesCS1D01G065600 chr3D 90.476 84 8 0 9426 9509 402469312 402469395 2.810000e-20 111.0
63 TraesCS1D01G065600 chr3D 95.000 40 2 0 9364 9403 425566663 425566624 7.970000e-06 63.9
64 TraesCS1D01G065600 chr4B 100.000 56 0 0 3985 4040 14011368 14011423 4.700000e-18 104.0
65 TraesCS1D01G065600 chr4B 98.246 57 1 0 3932 3988 510901462 510901518 6.080000e-17 100.0
66 TraesCS1D01G065600 chr4B 88.333 60 1 4 7900 7959 185232387 185232440 6.160000e-07 67.6
67 TraesCS1D01G065600 chr6B 85.057 87 9 4 9426 9511 657621231 657621148 1.700000e-12 86.1
68 TraesCS1D01G065600 chr6B 90.566 53 1 4 7911 7963 26089526 26089478 6.160000e-07 67.6
69 TraesCS1D01G065600 chr6B 90.566 53 1 4 7911 7963 37261470 37261422 6.160000e-07 67.6
70 TraesCS1D01G065600 chr2D 84.884 86 11 2 9426 9511 33350970 33351053 1.700000e-12 86.1
71 TraesCS1D01G065600 chr2D 94.000 50 0 3 7911 7960 628013120 628013166 1.320000e-08 73.1
72 TraesCS1D01G065600 chr2D 90.566 53 1 4 7911 7963 595156325 595156277 6.160000e-07 67.6
73 TraesCS1D01G065600 chr5A 97.143 35 1 0 9364 9398 537922556 537922590 1.030000e-04 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G065600 chr1D 47308909 47318419 9510 True 17564.0 17564 100.000000 1 9511 1 chr1D.!!$R1 9510
1 TraesCS1D01G065600 chr1D 46632608 46641889 9281 True 530.0 941 85.430600 4 7630 5 chr1D.!!$R4 7626
2 TraesCS1D01G065600 chr1B 67013983 67023125 9142 True 3076.6 6682 96.353200 4 9511 5 chr1B.!!$R3 9507
3 TraesCS1D01G065600 chr1A 47181824 47194431 12607 True 2468.5 6558 95.885167 4 9511 6 chr1A.!!$R2 9507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 2117 0.036010 GCTCTGAGCTAGGTTGCCAA 60.036 55.000 21.93 0.0 38.45 4.52 F
900 2984 0.879400 GATGTGATCTGAGCCCGCAG 60.879 60.000 0.00 0.0 37.24 5.18 F
980 3064 0.944386 GTTGTGAACTGTGATGCCGT 59.056 50.000 0.00 0.0 0.00 5.68 F
1941 4034 1.233019 CTTCCACCAGCACAGTTCTG 58.767 55.000 0.00 0.0 0.00 3.02 F
2318 4497 3.366374 GCAGTTGTTTAGAATCAGTGGGC 60.366 47.826 0.00 0.0 0.00 5.36 F
4361 6730 2.429610 TCCTATTCTACACCTGGTTCGC 59.570 50.000 0.00 0.0 0.00 4.70 F
5507 7944 0.178990 GGGGTGACTCTTGGCTTTGT 60.179 55.000 0.00 0.0 0.00 2.83 F
6445 9067 2.348362 GCAACCACTGAAAACACTTTGC 59.652 45.455 0.00 0.0 0.00 3.68 F
8063 10741 0.978907 TTGGAACGGAGGGAGTAACC 59.021 55.000 0.00 0.0 38.08 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 4067 1.271543 CCTTGCTGTTCTGATGGGTGA 60.272 52.381 0.00 0.0 0.00 4.02 R
3163 5462 2.235402 CCGGTCCACACCAAGTATTACT 59.765 50.000 0.00 0.0 44.02 2.24 R
3576 5879 9.559732 CTTTGAAATTTTCTAAGGAACCCAATT 57.440 29.630 19.35 0.0 38.36 2.32 R
4361 6730 2.006415 TGTGCATAGGGGAAGGGGG 61.006 63.158 0.00 0.0 0.00 5.40 R
4717 7146 3.624326 TTTGATTCTTGACAGGCAACG 57.376 42.857 0.00 0.0 46.39 4.10 R
6127 8731 1.417517 TGCACTTCTCTTTCCTGAGCA 59.582 47.619 0.00 0.0 34.29 4.26 R
6644 9268 1.548582 CCATTCTTCACCAGGTTGCCT 60.549 52.381 0.00 0.0 0.00 4.75 R
8321 11000 0.322008 CCTCTGCTTGACACCCCTTC 60.322 60.000 0.00 0.0 0.00 3.46 R
9308 12235 0.328258 AATGTCCTACACACTGGGCC 59.672 55.000 0.00 0.0 38.04 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
511 1903 0.693049 AATCAACGGAGCAAGTCCCT 59.307 50.000 0.00 0.00 43.47 4.20
571 1963 1.153369 CCTGATCGTGGCCAATCGT 60.153 57.895 7.24 0.00 0.00 3.73
725 2117 0.036010 GCTCTGAGCTAGGTTGCCAA 60.036 55.000 21.93 0.00 38.45 4.52
897 2981 3.606595 ATATGATGTGATCTGAGCCCG 57.393 47.619 0.00 0.00 0.00 6.13
900 2984 0.879400 GATGTGATCTGAGCCCGCAG 60.879 60.000 0.00 0.00 37.24 5.18
980 3064 0.944386 GTTGTGAACTGTGATGCCGT 59.056 50.000 0.00 0.00 0.00 5.68
1136 3221 3.181464 TGACGTTGTTGATGGTAAGTGGA 60.181 43.478 0.00 0.00 0.00 4.02
1626 3718 1.601171 CAGGCCTTAGCTGCAGTCT 59.399 57.895 16.64 15.00 39.73 3.24
1668 3761 4.847633 TGTTTCATTCTCTTTTGTGCTCG 58.152 39.130 0.00 0.00 0.00 5.03
1733 3826 1.964223 TGTTTTTGTGGGTGTGTGTGT 59.036 42.857 0.00 0.00 0.00 3.72
1734 3827 2.288457 TGTTTTTGTGGGTGTGTGTGTG 60.288 45.455 0.00 0.00 0.00 3.82
1941 4034 1.233019 CTTCCACCAGCACAGTTCTG 58.767 55.000 0.00 0.00 0.00 3.02
1974 4067 4.085357 TGGAAGTGTGTCAGCAGTTTAT 57.915 40.909 0.00 0.00 32.70 1.40
2318 4497 3.366374 GCAGTTGTTTAGAATCAGTGGGC 60.366 47.826 0.00 0.00 0.00 5.36
3077 5375 9.815306 TCTATGTATCATCTCCTTAGTTAGCTT 57.185 33.333 0.00 0.00 0.00 3.74
3163 5462 9.853555 ATTCGTTTTCATTTGCTAATGTGATAA 57.146 25.926 18.32 5.01 41.54 1.75
3576 5879 5.534278 TGTCCAGAACATAAATTTCTGCACA 59.466 36.000 5.02 5.02 45.40 4.57
3940 6294 8.943594 AGGTAGTTTCTAAATCGGATAGAGAT 57.056 34.615 0.00 0.00 31.41 2.75
3945 6299 9.315363 AGTTTCTAAATCGGATAGAGATATGGT 57.685 33.333 0.00 0.00 31.41 3.55
3990 6344 8.883731 AGTAACTCTAAATGAATTGTTGATCCG 58.116 33.333 0.00 0.00 0.00 4.18
3991 6345 7.921786 AACTCTAAATGAATTGTTGATCCGA 57.078 32.000 0.00 0.00 0.00 4.55
3992 6346 8.511604 AACTCTAAATGAATTGTTGATCCGAT 57.488 30.769 0.00 0.00 0.00 4.18
3993 6347 9.613428 AACTCTAAATGAATTGTTGATCCGATA 57.387 29.630 0.00 0.00 0.00 2.92
3994 6348 9.613428 ACTCTAAATGAATTGTTGATCCGATAA 57.387 29.630 0.00 0.00 0.00 1.75
4000 6354 9.956720 AATGAATTGTTGATCCGATAAAGAATC 57.043 29.630 2.09 0.00 0.00 2.52
4001 6355 8.504812 TGAATTGTTGATCCGATAAAGAATCA 57.495 30.769 2.09 1.04 33.87 2.57
4002 6356 8.955388 TGAATTGTTGATCCGATAAAGAATCAA 58.045 29.630 2.09 0.00 33.87 2.57
4003 6357 9.787532 GAATTGTTGATCCGATAAAGAATCAAA 57.212 29.630 2.09 0.00 33.87 2.69
4004 6358 9.573133 AATTGTTGATCCGATAAAGAATCAAAC 57.427 29.630 2.09 0.00 33.87 2.93
4005 6359 7.921786 TGTTGATCCGATAAAGAATCAAACT 57.078 32.000 0.00 0.00 33.87 2.66
4006 6360 8.335532 TGTTGATCCGATAAAGAATCAAACTT 57.664 30.769 0.00 0.00 33.87 2.66
4007 6361 8.236586 TGTTGATCCGATAAAGAATCAAACTTG 58.763 33.333 0.00 0.00 33.87 3.16
4008 6362 7.921786 TGATCCGATAAAGAATCAAACTTGT 57.078 32.000 0.00 0.00 33.87 3.16
4009 6363 8.335532 TGATCCGATAAAGAATCAAACTTGTT 57.664 30.769 0.00 0.00 33.87 2.83
4010 6364 8.792633 TGATCCGATAAAGAATCAAACTTGTTT 58.207 29.630 0.00 0.00 33.87 2.83
4020 6374 9.883142 AAGAATCAAACTTGTTTAAATGTTCCA 57.117 25.926 0.00 0.00 0.00 3.53
4021 6375 9.533253 AGAATCAAACTTGTTTAAATGTTCCAG 57.467 29.630 0.00 0.00 0.00 3.86
4022 6376 7.713764 ATCAAACTTGTTTAAATGTTCCAGC 57.286 32.000 0.00 0.00 0.00 4.85
4023 6377 6.872920 TCAAACTTGTTTAAATGTTCCAGCT 58.127 32.000 0.00 0.00 0.00 4.24
4024 6378 8.001881 TCAAACTTGTTTAAATGTTCCAGCTA 57.998 30.769 0.00 0.00 0.00 3.32
4025 6379 8.637986 TCAAACTTGTTTAAATGTTCCAGCTAT 58.362 29.630 0.00 0.00 0.00 2.97
4026 6380 9.260002 CAAACTTGTTTAAATGTTCCAGCTATT 57.740 29.630 0.00 0.00 0.00 1.73
4027 6381 9.476202 AAACTTGTTTAAATGTTCCAGCTATTC 57.524 29.630 0.00 0.00 0.00 1.75
4028 6382 8.409358 ACTTGTTTAAATGTTCCAGCTATTCT 57.591 30.769 0.00 0.00 0.00 2.40
4029 6383 8.515414 ACTTGTTTAAATGTTCCAGCTATTCTC 58.485 33.333 0.00 0.00 0.00 2.87
4030 6384 8.635765 TTGTTTAAATGTTCCAGCTATTCTCT 57.364 30.769 0.00 0.00 0.00 3.10
4031 6385 9.733556 TTGTTTAAATGTTCCAGCTATTCTCTA 57.266 29.630 0.00 0.00 0.00 2.43
4032 6386 9.905713 TGTTTAAATGTTCCAGCTATTCTCTAT 57.094 29.630 0.00 0.00 0.00 1.98
4036 6390 8.457238 AAATGTTCCAGCTATTCTCTATTTCC 57.543 34.615 0.00 0.00 0.00 3.13
4037 6391 6.814954 TGTTCCAGCTATTCTCTATTTCCT 57.185 37.500 0.00 0.00 0.00 3.36
4038 6392 7.200434 TGTTCCAGCTATTCTCTATTTCCTT 57.800 36.000 0.00 0.00 0.00 3.36
4039 6393 7.050377 TGTTCCAGCTATTCTCTATTTCCTTG 58.950 38.462 0.00 0.00 0.00 3.61
4361 6730 2.429610 TCCTATTCTACACCTGGTTCGC 59.570 50.000 0.00 0.00 0.00 4.70
4713 7142 6.624352 TGGAATGAATCTTGTAAGCTATGC 57.376 37.500 0.00 0.00 0.00 3.14
4717 7146 8.233190 GGAATGAATCTTGTAAGCTATGCATAC 58.767 37.037 1.16 0.00 33.98 2.39
5423 7860 0.254747 TGGCCGGTTTCCCTCATAAG 59.745 55.000 1.90 0.00 0.00 1.73
5441 7878 7.147846 CCTCATAAGCAGGGTCAATTTGTTTAT 60.148 37.037 0.00 0.00 31.26 1.40
5452 7889 9.271828 GGGTCAATTTGTTTATGTTTTTGATCT 57.728 29.630 0.00 0.00 0.00 2.75
5507 7944 0.178990 GGGGTGACTCTTGGCTTTGT 60.179 55.000 0.00 0.00 0.00 2.83
6127 8731 6.934645 TCAAATTAGAATCGTGGAACTGTTCT 59.065 34.615 19.05 0.00 33.96 3.01
6445 9067 2.348362 GCAACCACTGAAAACACTTTGC 59.652 45.455 0.00 0.00 0.00 3.68
6644 9268 4.526970 GGCAGAGAATGGGATGTTCTTAA 58.473 43.478 0.00 0.00 36.13 1.85
6892 9517 6.817184 ACTATAAGTATGCAGGTAGGTGTTG 58.183 40.000 0.00 0.00 0.00 3.33
7025 9674 8.092687 GGGCATATTCATTATCAAATCAAAGCT 58.907 33.333 0.00 0.00 0.00 3.74
7404 10062 8.754230 ACTGTCTTTACCGAGTTATCTTTTAC 57.246 34.615 0.00 0.00 0.00 2.01
7925 10603 5.297029 GCATGTTCCTAAGTCAAATACTCCC 59.703 44.000 0.00 0.00 37.50 4.30
7926 10604 6.653989 CATGTTCCTAAGTCAAATACTCCCT 58.346 40.000 0.00 0.00 37.50 4.20
7927 10605 6.295719 TGTTCCTAAGTCAAATACTCCCTC 57.704 41.667 0.00 0.00 37.50 4.30
7928 10606 5.189145 TGTTCCTAAGTCAAATACTCCCTCC 59.811 44.000 0.00 0.00 37.50 4.30
7929 10607 3.958798 TCCTAAGTCAAATACTCCCTCCG 59.041 47.826 0.00 0.00 37.50 4.63
7930 10608 3.705072 CCTAAGTCAAATACTCCCTCCGT 59.295 47.826 0.00 0.00 37.50 4.69
7931 10609 3.889520 AAGTCAAATACTCCCTCCGTC 57.110 47.619 0.00 0.00 37.50 4.79
7932 10610 2.108970 AGTCAAATACTCCCTCCGTCC 58.891 52.381 0.00 0.00 30.33 4.79
7933 10611 1.138464 GTCAAATACTCCCTCCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
7934 10612 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
7935 10613 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
7936 10614 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
7937 10615 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
7938 10616 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
7939 10617 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
7940 10618 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
7941 10619 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
7942 10620 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
7943 10621 2.645797 TCCCTCCGTCCCAAAATAAGTT 59.354 45.455 0.00 0.00 0.00 2.66
7944 10622 2.752903 CCCTCCGTCCCAAAATAAGTTG 59.247 50.000 0.00 0.00 0.00 3.16
7945 10623 3.418047 CCTCCGTCCCAAAATAAGTTGT 58.582 45.455 0.00 0.00 0.00 3.32
7946 10624 3.439129 CCTCCGTCCCAAAATAAGTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
7947 10625 4.324267 CTCCGTCCCAAAATAAGTTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
7948 10626 4.320870 TCCGTCCCAAAATAAGTTGTCTC 58.679 43.478 0.00 0.00 0.00 3.36
7949 10627 4.069304 CCGTCCCAAAATAAGTTGTCTCA 58.931 43.478 0.00 0.00 0.00 3.27
7950 10628 4.517453 CCGTCCCAAAATAAGTTGTCTCAA 59.483 41.667 0.00 0.00 0.00 3.02
7951 10629 5.449304 CGTCCCAAAATAAGTTGTCTCAAC 58.551 41.667 4.69 4.69 0.00 3.18
7952 10630 5.238650 CGTCCCAAAATAAGTTGTCTCAACT 59.761 40.000 9.00 9.00 0.00 3.16
7953 10631 6.238648 CGTCCCAAAATAAGTTGTCTCAACTT 60.239 38.462 24.33 24.33 42.53 2.66
7954 10632 7.489160 GTCCCAAAATAAGTTGTCTCAACTTT 58.511 34.615 25.50 14.58 40.58 2.66
7955 10633 8.626526 GTCCCAAAATAAGTTGTCTCAACTTTA 58.373 33.333 25.50 15.33 40.58 1.85
7956 10634 8.846211 TCCCAAAATAAGTTGTCTCAACTTTAG 58.154 33.333 25.50 14.43 40.58 1.85
7957 10635 8.630037 CCCAAAATAAGTTGTCTCAACTTTAGT 58.370 33.333 25.50 13.84 40.58 2.24
7963 10641 9.790389 ATAAGTTGTCTCAACTTTAGTATCGAG 57.210 33.333 25.50 0.00 40.58 4.04
7964 10642 6.622549 AGTTGTCTCAACTTTAGTATCGAGG 58.377 40.000 9.00 0.00 0.00 4.63
7965 10643 5.578005 TGTCTCAACTTTAGTATCGAGGG 57.422 43.478 0.00 0.00 0.00 4.30
7966 10644 5.258841 TGTCTCAACTTTAGTATCGAGGGA 58.741 41.667 0.00 0.00 0.00 4.20
7967 10645 5.357314 TGTCTCAACTTTAGTATCGAGGGAG 59.643 44.000 0.00 0.00 0.00 4.30
7968 10646 4.888239 TCTCAACTTTAGTATCGAGGGAGG 59.112 45.833 0.00 0.00 0.00 4.30
7969 10647 3.958798 TCAACTTTAGTATCGAGGGAGGG 59.041 47.826 0.00 0.00 0.00 4.30
7970 10648 3.958798 CAACTTTAGTATCGAGGGAGGGA 59.041 47.826 0.00 0.00 0.00 4.20
7971 10649 3.834938 ACTTTAGTATCGAGGGAGGGAG 58.165 50.000 0.00 0.00 0.00 4.30
7972 10650 3.204831 ACTTTAGTATCGAGGGAGGGAGT 59.795 47.826 0.00 0.00 0.00 3.85
7973 10651 4.414846 ACTTTAGTATCGAGGGAGGGAGTA 59.585 45.833 0.00 0.00 0.00 2.59
7974 10652 4.637387 TTAGTATCGAGGGAGGGAGTAG 57.363 50.000 0.00 0.00 0.00 2.57
7975 10653 2.420705 AGTATCGAGGGAGGGAGTAGT 58.579 52.381 0.00 0.00 0.00 2.73
7976 10654 3.596101 AGTATCGAGGGAGGGAGTAGTA 58.404 50.000 0.00 0.00 0.00 1.82
7977 10655 2.955342 ATCGAGGGAGGGAGTAGTAC 57.045 55.000 0.00 0.00 0.00 2.73
7978 10656 1.890552 TCGAGGGAGGGAGTAGTACT 58.109 55.000 1.37 1.37 0.00 2.73
7979 10657 1.767681 TCGAGGGAGGGAGTAGTACTC 59.232 57.143 20.24 20.24 44.32 2.59
7989 10667 2.296792 GAGTAGTACTCCCTCCGTTCC 58.703 57.143 18.10 0.00 39.28 3.62
7990 10668 1.637553 AGTAGTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
7991 10669 2.042162 AGTAGTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
7992 10670 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
7993 10671 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
7994 10672 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
7995 10673 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
7996 10674 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
7997 10675 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
7998 10676 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
7999 10677 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
8000 10678 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
8001 10679 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
8002 10680 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
8003 10681 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
8004 10682 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
8005 10683 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
8006 10684 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
8007 10685 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
8008 10686 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
8009 10687 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
8010 10688 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
8011 10689 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
8012 10690 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
8013 10691 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
8014 10692 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
8037 10715 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
8038 10716 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
8039 10717 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
8045 10723 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
8047 10725 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
8061 10739 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
8062 10740 2.845363 TTTGGAACGGAGGGAGTAAC 57.155 50.000 0.00 0.00 0.00 2.50
8063 10741 0.978907 TTGGAACGGAGGGAGTAACC 59.021 55.000 0.00 0.00 38.08 2.85
8078 10756 6.096673 GGAGTAACCCACAATTGACAATTT 57.903 37.500 13.59 0.00 0.00 1.82
8079 10757 7.222000 GGAGTAACCCACAATTGACAATTTA 57.778 36.000 13.59 0.00 0.00 1.40
8321 11000 1.168714 CTGGAGCGAAAAGAAAGGGG 58.831 55.000 0.00 0.00 0.00 4.79
8419 11098 1.717032 AGGGAACACTCTGTAGCACA 58.283 50.000 0.00 0.00 0.00 4.57
8420 11099 2.047061 AGGGAACACTCTGTAGCACAA 58.953 47.619 0.00 0.00 0.00 3.33
8429 11108 6.467677 ACACTCTGTAGCACAATACAATCTT 58.532 36.000 0.00 0.00 35.32 2.40
8430 11109 6.369890 ACACTCTGTAGCACAATACAATCTTG 59.630 38.462 0.00 0.00 35.32 3.02
8440 11119 6.516527 GCACAATACAATCTTGAGGGAACAAA 60.517 38.462 0.00 0.00 0.00 2.83
8441 11120 7.605449 CACAATACAATCTTGAGGGAACAAAT 58.395 34.615 0.00 0.00 0.00 2.32
8462 11141 3.042682 TGAAGTTGTGTCCCTACTCCAA 58.957 45.455 0.00 0.00 0.00 3.53
8499 11178 3.376218 GCTCCAGGTAGCATGAGTG 57.624 57.895 0.00 0.00 42.30 3.51
8503 11182 0.904649 CCAGGTAGCATGAGTGACCA 59.095 55.000 0.00 0.00 34.18 4.02
8522 11201 3.091545 CCAACCATAGCTTGTCCATTGT 58.908 45.455 0.00 0.00 0.00 2.71
8526 11205 4.603131 ACCATAGCTTGTCCATTGTTCAT 58.397 39.130 0.00 0.00 0.00 2.57
8532 11211 4.586001 AGCTTGTCCATTGTTCATCTGTTT 59.414 37.500 0.00 0.00 0.00 2.83
8533 11212 4.919754 GCTTGTCCATTGTTCATCTGTTTC 59.080 41.667 0.00 0.00 0.00 2.78
8534 11213 5.507817 GCTTGTCCATTGTTCATCTGTTTCA 60.508 40.000 0.00 0.00 0.00 2.69
8554 11233 8.408601 TGTTTCAGAAGAAAAGGAAAGAAGATG 58.591 33.333 0.00 0.00 44.75 2.90
8586 11265 1.040646 TCTGAGCGACCAGTCAGTTT 58.959 50.000 0.00 0.00 40.97 2.66
8966 11657 9.961265 ATGCATCTTTGTGTCAATATCAATTAG 57.039 29.630 0.00 0.00 0.00 1.73
9088 12015 8.415950 TCCAAAGTTGTTATGTATCACCATTT 57.584 30.769 0.00 0.00 0.00 2.32
9107 12034 0.693622 TACGGGGTGGATTCTTGCAA 59.306 50.000 0.00 0.00 0.00 4.08
9286 12213 7.520451 AAAATCCTAAAGCTAAAGAAACCGT 57.480 32.000 0.00 0.00 0.00 4.83
9287 12214 8.625786 AAAATCCTAAAGCTAAAGAAACCGTA 57.374 30.769 0.00 0.00 0.00 4.02
9288 12215 8.803397 AAATCCTAAAGCTAAAGAAACCGTAT 57.197 30.769 0.00 0.00 0.00 3.06
9289 12216 8.434733 AATCCTAAAGCTAAAGAAACCGTATC 57.565 34.615 0.00 0.00 0.00 2.24
9290 12217 7.179076 TCCTAAAGCTAAAGAAACCGTATCT 57.821 36.000 0.00 0.00 0.00 1.98
9291 12218 8.297470 TCCTAAAGCTAAAGAAACCGTATCTA 57.703 34.615 0.00 0.00 0.00 1.98
9292 12219 8.411683 TCCTAAAGCTAAAGAAACCGTATCTAG 58.588 37.037 0.00 0.00 0.00 2.43
9293 12220 8.196103 CCTAAAGCTAAAGAAACCGTATCTAGT 58.804 37.037 0.00 0.00 0.00 2.57
9294 12221 9.583765 CTAAAGCTAAAGAAACCGTATCTAGTT 57.416 33.333 0.00 0.00 0.00 2.24
9296 12223 9.933723 AAAGCTAAAGAAACCGTATCTAGTTAA 57.066 29.630 0.00 0.00 0.00 2.01
9298 12225 9.747293 AGCTAAAGAAACCGTATCTAGTTAATC 57.253 33.333 0.00 0.00 0.00 1.75
9299 12226 8.976471 GCTAAAGAAACCGTATCTAGTTAATCC 58.024 37.037 0.00 0.00 0.00 3.01
9300 12227 7.998753 AAAGAAACCGTATCTAGTTAATCCG 57.001 36.000 0.00 0.00 0.00 4.18
9301 12228 6.705863 AGAAACCGTATCTAGTTAATCCGT 57.294 37.500 0.00 0.00 0.00 4.69
9302 12229 6.501781 AGAAACCGTATCTAGTTAATCCGTG 58.498 40.000 0.00 0.00 0.00 4.94
9303 12230 4.843220 ACCGTATCTAGTTAATCCGTGG 57.157 45.455 0.00 0.00 0.00 4.94
9304 12231 4.210331 ACCGTATCTAGTTAATCCGTGGT 58.790 43.478 0.00 0.00 0.00 4.16
9305 12232 4.037208 ACCGTATCTAGTTAATCCGTGGTG 59.963 45.833 0.00 0.00 0.00 4.17
9306 12233 4.037208 CCGTATCTAGTTAATCCGTGGTGT 59.963 45.833 0.00 0.00 0.00 4.16
9307 12234 5.450965 CCGTATCTAGTTAATCCGTGGTGTT 60.451 44.000 0.00 0.00 0.00 3.32
9308 12235 5.457799 CGTATCTAGTTAATCCGTGGTGTTG 59.542 44.000 0.00 0.00 0.00 3.33
9309 12236 4.196626 TCTAGTTAATCCGTGGTGTTGG 57.803 45.455 0.00 0.00 0.00 3.77
9310 12237 1.530323 AGTTAATCCGTGGTGTTGGC 58.470 50.000 0.00 0.00 0.00 4.52
9311 12238 0.524414 GTTAATCCGTGGTGTTGGCC 59.476 55.000 0.00 0.00 0.00 5.36
9312 12239 0.609681 TTAATCCGTGGTGTTGGCCC 60.610 55.000 0.00 0.00 0.00 5.80
9313 12240 1.780107 TAATCCGTGGTGTTGGCCCA 61.780 55.000 0.00 0.00 0.00 5.36
9314 12241 3.567579 ATCCGTGGTGTTGGCCCAG 62.568 63.158 0.00 0.00 31.13 4.45
9315 12242 4.579384 CCGTGGTGTTGGCCCAGT 62.579 66.667 0.00 0.00 31.13 4.00
9316 12243 3.286751 CGTGGTGTTGGCCCAGTG 61.287 66.667 0.00 0.00 31.13 3.66
9317 12244 2.123897 GTGGTGTTGGCCCAGTGT 60.124 61.111 0.00 0.00 31.13 3.55
9318 12245 2.123939 TGGTGTTGGCCCAGTGTG 60.124 61.111 0.00 0.00 0.00 3.82
9319 12246 2.123897 GGTGTTGGCCCAGTGTGT 60.124 61.111 0.00 0.00 0.00 3.72
9320 12247 1.149627 GGTGTTGGCCCAGTGTGTA 59.850 57.895 0.00 0.00 0.00 2.90
9321 12248 0.889186 GGTGTTGGCCCAGTGTGTAG 60.889 60.000 0.00 0.00 0.00 2.74
9322 12249 0.889186 GTGTTGGCCCAGTGTGTAGG 60.889 60.000 0.00 0.00 0.00 3.18
9323 12250 1.057275 TGTTGGCCCAGTGTGTAGGA 61.057 55.000 0.00 0.00 0.00 2.94
9324 12251 0.605589 GTTGGCCCAGTGTGTAGGAC 60.606 60.000 0.00 0.00 0.00 3.85
9325 12252 1.057275 TTGGCCCAGTGTGTAGGACA 61.057 55.000 0.00 0.00 36.71 4.02
9326 12253 0.840288 TGGCCCAGTGTGTAGGACAT 60.840 55.000 0.00 0.00 36.78 3.06
9327 12254 0.328258 GGCCCAGTGTGTAGGACATT 59.672 55.000 0.00 0.00 36.78 2.71
9328 12255 1.557832 GGCCCAGTGTGTAGGACATTA 59.442 52.381 0.00 0.00 36.78 1.90
9329 12256 2.420129 GGCCCAGTGTGTAGGACATTAG 60.420 54.545 0.00 0.00 36.78 1.73
9330 12257 2.420129 GCCCAGTGTGTAGGACATTAGG 60.420 54.545 0.00 0.00 36.78 2.69
9427 12427 7.436430 TCATGTAGAAGTACTATCATCGGTC 57.564 40.000 0.00 0.00 33.39 4.79
9442 12494 6.332735 TCATCGGTCATTAGATCACCTAAG 57.667 41.667 0.00 0.00 40.40 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
595 1987 4.102054 GGATATTCCCACTTCTTAACCGGA 59.898 45.833 9.46 0.00 0.00 5.14
725 2117 4.082408 CACCATATCACCGTATCCGTATGT 60.082 45.833 0.00 0.00 0.00 2.29
897 2981 7.254084 CCAAGAAACAAAATCACTTGTAACTGC 60.254 37.037 0.00 0.00 38.59 4.40
900 2984 6.533367 TGCCAAGAAACAAAATCACTTGTAAC 59.467 34.615 0.00 0.00 38.59 2.50
980 3064 6.544928 TCATCTGCACATCTTTAAGACCTA 57.455 37.500 0.00 0.00 0.00 3.08
985 3069 5.220989 CCCACATCATCTGCACATCTTTAAG 60.221 44.000 0.00 0.00 0.00 1.85
1136 3221 2.990740 TGGTTAACCCAGCCAAATCT 57.009 45.000 21.97 0.00 38.72 2.40
1182 3270 2.567169 CTCATCCAGGAACACAGGTACA 59.433 50.000 0.00 0.00 0.00 2.90
1733 3826 2.549349 GCGAGAAACCAAGTAGGAACCA 60.549 50.000 0.00 0.00 41.22 3.67
1734 3827 2.074576 GCGAGAAACCAAGTAGGAACC 58.925 52.381 0.00 0.00 41.22 3.62
1867 3960 4.463186 AGAGAGTTTCCGTAGTTGTAGCAT 59.537 41.667 0.00 0.00 0.00 3.79
1974 4067 1.271543 CCTTGCTGTTCTGATGGGTGA 60.272 52.381 0.00 0.00 0.00 4.02
3163 5462 2.235402 CCGGTCCACACCAAGTATTACT 59.765 50.000 0.00 0.00 44.02 2.24
3576 5879 9.559732 CTTTGAAATTTTCTAAGGAACCCAATT 57.440 29.630 19.35 0.00 38.36 2.32
3763 6100 6.448006 ACTGTCTGTGTGTATTAGACTGTTC 58.552 40.000 9.40 0.00 45.31 3.18
3964 6318 8.883731 CGGATCAACAATTCATTTAGAGTTACT 58.116 33.333 0.00 0.00 0.00 2.24
3965 6319 8.879759 TCGGATCAACAATTCATTTAGAGTTAC 58.120 33.333 0.00 0.00 0.00 2.50
3966 6320 9.613428 ATCGGATCAACAATTCATTTAGAGTTA 57.387 29.630 0.00 0.00 0.00 2.24
3967 6321 7.921786 TCGGATCAACAATTCATTTAGAGTT 57.078 32.000 0.00 0.00 0.00 3.01
3968 6322 9.613428 TTATCGGATCAACAATTCATTTAGAGT 57.387 29.630 0.00 0.00 0.00 3.24
3974 6328 9.956720 GATTCTTTATCGGATCAACAATTCATT 57.043 29.630 0.00 0.00 0.00 2.57
3975 6329 9.123902 TGATTCTTTATCGGATCAACAATTCAT 57.876 29.630 0.00 0.00 35.94 2.57
3976 6330 8.504812 TGATTCTTTATCGGATCAACAATTCA 57.495 30.769 0.00 0.00 35.94 2.57
3977 6331 9.787532 TTTGATTCTTTATCGGATCAACAATTC 57.212 29.630 0.00 0.00 35.94 2.17
3978 6332 9.573133 GTTTGATTCTTTATCGGATCAACAATT 57.427 29.630 0.00 0.00 35.94 2.32
3979 6333 8.960591 AGTTTGATTCTTTATCGGATCAACAAT 58.039 29.630 0.00 0.00 35.94 2.71
3980 6334 8.335532 AGTTTGATTCTTTATCGGATCAACAA 57.664 30.769 0.00 0.00 35.94 2.83
3981 6335 7.921786 AGTTTGATTCTTTATCGGATCAACA 57.078 32.000 0.00 0.00 35.94 3.33
3982 6336 8.237267 ACAAGTTTGATTCTTTATCGGATCAAC 58.763 33.333 0.00 0.00 35.94 3.18
3983 6337 8.335532 ACAAGTTTGATTCTTTATCGGATCAA 57.664 30.769 0.00 0.00 35.94 2.57
3984 6338 7.921786 ACAAGTTTGATTCTTTATCGGATCA 57.078 32.000 0.00 0.00 35.94 2.92
3994 6348 9.883142 TGGAACATTTAAACAAGTTTGATTCTT 57.117 25.926 8.37 0.00 34.23 2.52
3995 6349 9.533253 CTGGAACATTTAAACAAGTTTGATTCT 57.467 29.630 8.37 0.00 38.20 2.40
3996 6350 8.275632 GCTGGAACATTTAAACAAGTTTGATTC 58.724 33.333 8.37 2.13 38.20 2.52
3997 6351 7.986889 AGCTGGAACATTTAAACAAGTTTGATT 59.013 29.630 8.37 0.00 38.20 2.57
3998 6352 7.500141 AGCTGGAACATTTAAACAAGTTTGAT 58.500 30.769 8.37 0.53 38.20 2.57
3999 6353 6.872920 AGCTGGAACATTTAAACAAGTTTGA 58.127 32.000 8.37 0.00 38.20 2.69
4000 6354 8.816640 ATAGCTGGAACATTTAAACAAGTTTG 57.183 30.769 8.37 0.00 38.20 2.93
4001 6355 9.476202 GAATAGCTGGAACATTTAAACAAGTTT 57.524 29.630 0.00 3.47 38.20 2.66
4002 6356 8.860088 AGAATAGCTGGAACATTTAAACAAGTT 58.140 29.630 0.00 0.00 38.20 2.66
4003 6357 8.409358 AGAATAGCTGGAACATTTAAACAAGT 57.591 30.769 0.00 0.00 38.20 3.16
4004 6358 8.734386 AGAGAATAGCTGGAACATTTAAACAAG 58.266 33.333 0.00 0.00 38.20 3.16
4005 6359 8.635765 AGAGAATAGCTGGAACATTTAAACAA 57.364 30.769 0.00 0.00 38.20 2.83
4006 6360 9.905713 ATAGAGAATAGCTGGAACATTTAAACA 57.094 29.630 0.00 0.00 38.20 2.83
4010 6364 9.561069 GGAAATAGAGAATAGCTGGAACATTTA 57.439 33.333 0.00 0.00 38.20 1.40
4011 6365 8.277918 AGGAAATAGAGAATAGCTGGAACATTT 58.722 33.333 0.00 0.00 38.20 2.32
4012 6366 7.810260 AGGAAATAGAGAATAGCTGGAACATT 58.190 34.615 0.00 0.00 38.20 2.71
4013 6367 7.385894 AGGAAATAGAGAATAGCTGGAACAT 57.614 36.000 0.00 0.00 38.20 2.71
4014 6368 6.814954 AGGAAATAGAGAATAGCTGGAACA 57.185 37.500 0.00 0.00 0.00 3.18
4015 6369 7.051000 ACAAGGAAATAGAGAATAGCTGGAAC 58.949 38.462 0.00 0.00 0.00 3.62
4016 6370 7.200434 ACAAGGAAATAGAGAATAGCTGGAA 57.800 36.000 0.00 0.00 0.00 3.53
4017 6371 6.814954 ACAAGGAAATAGAGAATAGCTGGA 57.185 37.500 0.00 0.00 0.00 3.86
4018 6372 7.226325 CAGAACAAGGAAATAGAGAATAGCTGG 59.774 40.741 0.00 0.00 0.00 4.85
4019 6373 7.254727 GCAGAACAAGGAAATAGAGAATAGCTG 60.255 40.741 0.00 0.00 0.00 4.24
4020 6374 6.765512 GCAGAACAAGGAAATAGAGAATAGCT 59.234 38.462 0.00 0.00 0.00 3.32
4021 6375 6.765512 AGCAGAACAAGGAAATAGAGAATAGC 59.234 38.462 0.00 0.00 0.00 2.97
4022 6376 9.474920 CTAGCAGAACAAGGAAATAGAGAATAG 57.525 37.037 0.00 0.00 0.00 1.73
4023 6377 7.928706 GCTAGCAGAACAAGGAAATAGAGAATA 59.071 37.037 10.63 0.00 0.00 1.75
4024 6378 6.765512 GCTAGCAGAACAAGGAAATAGAGAAT 59.234 38.462 10.63 0.00 0.00 2.40
4025 6379 6.109359 GCTAGCAGAACAAGGAAATAGAGAA 58.891 40.000 10.63 0.00 0.00 2.87
4026 6380 5.187772 TGCTAGCAGAACAAGGAAATAGAGA 59.812 40.000 14.93 0.00 0.00 3.10
4027 6381 5.423015 TGCTAGCAGAACAAGGAAATAGAG 58.577 41.667 14.93 0.00 0.00 2.43
4028 6382 5.420725 TGCTAGCAGAACAAGGAAATAGA 57.579 39.130 14.93 0.00 0.00 1.98
4029 6383 5.587844 ACATGCTAGCAGAACAAGGAAATAG 59.412 40.000 23.89 0.01 0.00 1.73
4030 6384 5.500234 ACATGCTAGCAGAACAAGGAAATA 58.500 37.500 23.89 0.00 0.00 1.40
4031 6385 4.338879 ACATGCTAGCAGAACAAGGAAAT 58.661 39.130 23.89 0.00 0.00 2.17
4032 6386 3.754965 ACATGCTAGCAGAACAAGGAAA 58.245 40.909 23.89 0.00 0.00 3.13
4033 6387 3.423539 ACATGCTAGCAGAACAAGGAA 57.576 42.857 23.89 0.00 0.00 3.36
4034 6388 3.369471 GGTACATGCTAGCAGAACAAGGA 60.369 47.826 23.89 2.38 0.00 3.36
4035 6389 2.939103 GGTACATGCTAGCAGAACAAGG 59.061 50.000 23.89 8.46 0.00 3.61
4036 6390 3.599343 TGGTACATGCTAGCAGAACAAG 58.401 45.455 23.89 10.46 0.00 3.16
4037 6391 3.694043 TGGTACATGCTAGCAGAACAA 57.306 42.857 23.89 11.31 0.00 2.83
4361 6730 2.006415 TGTGCATAGGGGAAGGGGG 61.006 63.158 0.00 0.00 0.00 5.40
4713 7142 3.684305 TGATTCTTGACAGGCAACGTATG 59.316 43.478 0.00 0.00 46.39 2.39
4717 7146 3.624326 TTTGATTCTTGACAGGCAACG 57.376 42.857 0.00 0.00 46.39 4.10
5423 7860 6.859420 AAAACATAAACAAATTGACCCTGC 57.141 33.333 0.00 0.00 0.00 4.85
5452 7889 7.083653 GCTGATCCAGTTTATAAGGGAAACCA 61.084 42.308 6.67 5.44 43.33 3.67
5570 8010 8.885494 AATAATAGTGCAAGCAAGTTCAAAAA 57.115 26.923 0.00 0.00 0.00 1.94
5571 8011 8.763356 CAAATAATAGTGCAAGCAAGTTCAAAA 58.237 29.630 0.00 0.00 0.00 2.44
5572 8012 7.095691 GCAAATAATAGTGCAAGCAAGTTCAAA 60.096 33.333 0.00 0.00 40.58 2.69
6127 8731 1.417517 TGCACTTCTCTTTCCTGAGCA 59.582 47.619 0.00 0.00 34.29 4.26
6335 8942 5.069648 TCAATGTTGCATTGAAACCCTGTAA 59.930 36.000 18.61 0.00 35.35 2.41
6445 9067 7.451281 AACGACAGTTGTATTCTCATTATCG 57.549 36.000 0.00 0.00 39.48 2.92
6644 9268 1.548582 CCATTCTTCACCAGGTTGCCT 60.549 52.381 0.00 0.00 0.00 4.75
6672 9296 6.687393 GCTGATTTCCTCCTGTTCATATCTCA 60.687 42.308 0.00 0.00 0.00 3.27
6892 9517 9.820229 TTTCGTTTGTGTTCAGAATGTATATTC 57.180 29.630 4.12 4.12 42.44 1.75
7025 9674 3.585862 GACTGCCTTGAACGATAACAGA 58.414 45.455 0.00 0.00 0.00 3.41
7404 10062 7.630924 AGTCTTTTTGTTGAACTGAGATAACG 58.369 34.615 0.00 0.00 0.00 3.18
7898 10574 5.882557 AGTATTTGACTTAGGAACATGCCAG 59.117 40.000 0.00 0.00 33.13 4.85
7900 10576 5.297029 GGAGTATTTGACTTAGGAACATGCC 59.703 44.000 0.00 0.00 39.06 4.40
7925 10603 4.324267 AGACAACTTATTTTGGGACGGAG 58.676 43.478 0.00 0.00 0.00 4.63
7926 10604 4.202377 TGAGACAACTTATTTTGGGACGGA 60.202 41.667 0.00 0.00 0.00 4.69
7927 10605 4.069304 TGAGACAACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
7928 10606 5.238650 AGTTGAGACAACTTATTTTGGGACG 59.761 40.000 10.73 0.00 0.00 4.79
7929 10607 6.635030 AGTTGAGACAACTTATTTTGGGAC 57.365 37.500 10.73 0.00 0.00 4.46
7930 10608 7.654022 AAAGTTGAGACAACTTATTTTGGGA 57.346 32.000 23.65 0.00 39.36 4.37
7931 10609 8.630037 ACTAAAGTTGAGACAACTTATTTTGGG 58.370 33.333 23.65 13.73 39.36 4.12
7937 10615 9.790389 CTCGATACTAAAGTTGAGACAACTTAT 57.210 33.333 23.65 15.99 39.36 1.73
7938 10616 8.242053 CCTCGATACTAAAGTTGAGACAACTTA 58.758 37.037 23.65 12.79 39.36 2.24
7939 10617 7.091443 CCTCGATACTAAAGTTGAGACAACTT 58.909 38.462 19.66 19.66 41.82 2.66
7940 10618 6.350277 CCCTCGATACTAAAGTTGAGACAACT 60.350 42.308 10.73 10.73 0.00 3.16
7941 10619 5.805994 CCCTCGATACTAAAGTTGAGACAAC 59.194 44.000 6.53 6.53 0.00 3.32
7942 10620 5.713389 TCCCTCGATACTAAAGTTGAGACAA 59.287 40.000 0.00 0.00 0.00 3.18
7943 10621 5.258841 TCCCTCGATACTAAAGTTGAGACA 58.741 41.667 0.00 0.00 0.00 3.41
7944 10622 5.221087 CCTCCCTCGATACTAAAGTTGAGAC 60.221 48.000 0.00 0.00 0.00 3.36
7945 10623 4.888239 CCTCCCTCGATACTAAAGTTGAGA 59.112 45.833 0.00 0.00 0.00 3.27
7946 10624 4.038162 CCCTCCCTCGATACTAAAGTTGAG 59.962 50.000 0.00 0.00 0.00 3.02
7947 10625 3.958798 CCCTCCCTCGATACTAAAGTTGA 59.041 47.826 0.00 0.00 0.00 3.18
7948 10626 3.958798 TCCCTCCCTCGATACTAAAGTTG 59.041 47.826 0.00 0.00 0.00 3.16
7949 10627 4.216708 CTCCCTCCCTCGATACTAAAGTT 58.783 47.826 0.00 0.00 0.00 2.66
7950 10628 3.204831 ACTCCCTCCCTCGATACTAAAGT 59.795 47.826 0.00 0.00 0.00 2.66
7951 10629 3.834938 ACTCCCTCCCTCGATACTAAAG 58.165 50.000 0.00 0.00 0.00 1.85
7952 10630 3.967467 ACTCCCTCCCTCGATACTAAA 57.033 47.619 0.00 0.00 0.00 1.85
7953 10631 3.979347 ACTACTCCCTCCCTCGATACTAA 59.021 47.826 0.00 0.00 0.00 2.24
7954 10632 3.596101 ACTACTCCCTCCCTCGATACTA 58.404 50.000 0.00 0.00 0.00 1.82
7955 10633 2.420705 ACTACTCCCTCCCTCGATACT 58.579 52.381 0.00 0.00 0.00 2.12
7956 10634 2.955342 ACTACTCCCTCCCTCGATAC 57.045 55.000 0.00 0.00 0.00 2.24
7957 10635 3.582208 GAGTACTACTCCCTCCCTCGATA 59.418 52.174 5.01 0.00 39.28 2.92
7958 10636 2.372837 GAGTACTACTCCCTCCCTCGAT 59.627 54.545 5.01 0.00 39.28 3.59
7959 10637 1.767681 GAGTACTACTCCCTCCCTCGA 59.232 57.143 5.01 0.00 39.28 4.04
7960 10638 2.259266 GAGTACTACTCCCTCCCTCG 57.741 60.000 5.01 0.00 39.28 4.63
7969 10647 2.296792 GGAACGGAGGGAGTACTACTC 58.703 57.143 15.38 15.38 44.32 2.59
7970 10648 1.637553 TGGAACGGAGGGAGTACTACT 59.362 52.381 4.77 1.85 0.00 2.57
7971 10649 2.134789 TGGAACGGAGGGAGTACTAC 57.865 55.000 0.00 0.00 0.00 2.73
7972 10650 2.905415 TTGGAACGGAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
7973 10651 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
7974 10652 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
7975 10653 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
7976 10654 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
7977 10655 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
7978 10656 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
7979 10657 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
7980 10658 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
7981 10659 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
7982 10660 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
7983 10661 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
7984 10662 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
7985 10663 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
7986 10664 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
7987 10665 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
7988 10666 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
8011 10689 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
8012 10690 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
8013 10691 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
8014 10692 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
8015 10693 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
8016 10694 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
8017 10695 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
8018 10696 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
8019 10697 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
8020 10698 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
8021 10699 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
8022 10700 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
8023 10701 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
8024 10702 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
8025 10703 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
8026 10704 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
8027 10705 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
8028 10706 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
8029 10707 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
8030 10708 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
8031 10709 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
8032 10710 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
8033 10711 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
8034 10712 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
8035 10713 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
8036 10714 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
8037 10715 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
8038 10716 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
8039 10717 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
8045 10723 2.674958 GGTTACTCCCTCCGTTCCA 58.325 57.895 0.00 0.00 0.00 3.53
8061 10739 5.862845 TGCATTAAATTGTCAATTGTGGGT 58.137 33.333 11.54 0.00 0.00 4.51
8062 10740 6.988622 ATGCATTAAATTGTCAATTGTGGG 57.011 33.333 11.54 4.23 0.00 4.61
8098 10776 4.784838 TCCCAGGATATCATACCATCCAAG 59.215 45.833 4.83 0.00 42.78 3.61
8267 10946 7.180408 TCAAAGCTGGGTAAGGTATAGATATCC 59.820 40.741 0.00 0.00 34.84 2.59
8273 10952 5.930135 ACATCAAAGCTGGGTAAGGTATAG 58.070 41.667 0.00 0.00 34.84 1.31
8321 11000 0.322008 CCTCTGCTTGACACCCCTTC 60.322 60.000 0.00 0.00 0.00 3.46
8371 11050 7.840342 ACAGTGCATGAGAAATAGTTCTTAG 57.160 36.000 6.91 1.87 44.42 2.18
8419 11098 8.421249 TTCATTTGTTCCCTCAAGATTGTATT 57.579 30.769 0.00 0.00 0.00 1.89
8420 11099 7.671398 ACTTCATTTGTTCCCTCAAGATTGTAT 59.329 33.333 0.00 0.00 0.00 2.29
8429 11108 4.277476 ACACAACTTCATTTGTTCCCTCA 58.723 39.130 0.00 0.00 37.62 3.86
8430 11109 4.261614 GGACACAACTTCATTTGTTCCCTC 60.262 45.833 0.00 0.00 37.62 4.30
8440 11119 3.248024 TGGAGTAGGGACACAACTTCAT 58.752 45.455 0.00 0.00 0.00 2.57
8441 11120 2.684943 TGGAGTAGGGACACAACTTCA 58.315 47.619 0.00 0.00 0.00 3.02
8491 11170 1.672881 GCTATGGTTGGTCACTCATGC 59.327 52.381 0.00 0.00 0.00 4.06
8499 11178 2.489938 TGGACAAGCTATGGTTGGTC 57.510 50.000 12.95 2.62 44.10 4.02
8503 11182 4.406456 TGAACAATGGACAAGCTATGGTT 58.594 39.130 0.00 0.00 34.62 3.67
8522 11201 7.880160 TTCCTTTTCTTCTGAAACAGATGAA 57.120 32.000 18.98 18.98 45.92 2.57
8526 11205 7.829211 TCTTCTTTCCTTTTCTTCTGAAACAGA 59.171 33.333 0.00 0.00 41.34 3.41
8532 11211 5.474876 GCCATCTTCTTTCCTTTTCTTCTGA 59.525 40.000 0.00 0.00 0.00 3.27
8533 11212 5.618640 CGCCATCTTCTTTCCTTTTCTTCTG 60.619 44.000 0.00 0.00 0.00 3.02
8534 11213 4.457257 CGCCATCTTCTTTCCTTTTCTTCT 59.543 41.667 0.00 0.00 0.00 2.85
8586 11265 4.397420 ACACATGTGTATGAGAAAAGGCA 58.603 39.130 29.66 0.00 42.90 4.75
8695 11386 3.627577 TGACAAAGTGAAGAACTCTTGCC 59.372 43.478 0.00 0.00 38.56 4.52
8951 11642 5.049474 GCATCGTGCCTAATTGATATTGACA 60.049 40.000 0.00 0.00 37.42 3.58
9088 12015 0.693622 TTGCAAGAATCCACCCCGTA 59.306 50.000 0.00 0.00 0.00 4.02
9107 12034 9.822185 AAAAAGTTGAGCTATTCAAAACTTCAT 57.178 25.926 0.00 0.00 46.85 2.57
9282 12209 4.037208 CACCACGGATTAACTAGATACGGT 59.963 45.833 0.00 0.00 35.17 4.83
9283 12210 4.037208 ACACCACGGATTAACTAGATACGG 59.963 45.833 0.00 0.00 35.17 4.02
9284 12211 5.179045 ACACCACGGATTAACTAGATACG 57.821 43.478 0.00 0.00 36.90 3.06
9285 12212 5.751990 CCAACACCACGGATTAACTAGATAC 59.248 44.000 0.00 0.00 0.00 2.24
9286 12213 5.682990 GCCAACACCACGGATTAACTAGATA 60.683 44.000 0.00 0.00 0.00 1.98
9287 12214 4.766375 CCAACACCACGGATTAACTAGAT 58.234 43.478 0.00 0.00 0.00 1.98
9288 12215 3.618019 GCCAACACCACGGATTAACTAGA 60.618 47.826 0.00 0.00 0.00 2.43
9289 12216 2.676342 GCCAACACCACGGATTAACTAG 59.324 50.000 0.00 0.00 0.00 2.57
9290 12217 2.616001 GGCCAACACCACGGATTAACTA 60.616 50.000 0.00 0.00 0.00 2.24
9291 12218 1.530323 GCCAACACCACGGATTAACT 58.470 50.000 0.00 0.00 0.00 2.24
9292 12219 0.524414 GGCCAACACCACGGATTAAC 59.476 55.000 0.00 0.00 0.00 2.01
9293 12220 0.609681 GGGCCAACACCACGGATTAA 60.610 55.000 4.39 0.00 0.00 1.40
9294 12221 1.001887 GGGCCAACACCACGGATTA 60.002 57.895 4.39 0.00 0.00 1.75
9295 12222 2.282887 GGGCCAACACCACGGATT 60.283 61.111 4.39 0.00 0.00 3.01
9296 12223 3.567579 CTGGGCCAACACCACGGAT 62.568 63.158 8.04 0.00 33.63 4.18
9297 12224 4.263572 CTGGGCCAACACCACGGA 62.264 66.667 8.04 0.00 33.63 4.69
9298 12225 4.579384 ACTGGGCCAACACCACGG 62.579 66.667 8.04 0.00 33.63 4.94
9299 12226 3.286751 CACTGGGCCAACACCACG 61.287 66.667 8.04 0.00 33.63 4.94
9300 12227 2.123897 ACACTGGGCCAACACCAC 60.124 61.111 8.04 0.00 33.63 4.16
9301 12228 1.636769 TACACACTGGGCCAACACCA 61.637 55.000 8.04 0.00 36.38 4.17
9302 12229 0.889186 CTACACACTGGGCCAACACC 60.889 60.000 8.04 0.00 0.00 4.16
9303 12230 0.889186 CCTACACACTGGGCCAACAC 60.889 60.000 8.04 0.00 0.00 3.32
9304 12231 1.057275 TCCTACACACTGGGCCAACA 61.057 55.000 8.04 0.00 0.00 3.33
9305 12232 0.605589 GTCCTACACACTGGGCCAAC 60.606 60.000 8.04 0.00 0.00 3.77
9306 12233 1.057275 TGTCCTACACACTGGGCCAA 61.057 55.000 8.04 0.00 0.00 4.52
9307 12234 0.840288 ATGTCCTACACACTGGGCCA 60.840 55.000 5.85 5.85 38.04 5.36
9308 12235 0.328258 AATGTCCTACACACTGGGCC 59.672 55.000 0.00 0.00 38.04 5.80
9309 12236 2.420129 CCTAATGTCCTACACACTGGGC 60.420 54.545 0.00 0.00 38.04 5.36
9310 12237 3.104512 TCCTAATGTCCTACACACTGGG 58.895 50.000 0.00 0.00 38.04 4.45
9311 12238 3.428999 CGTCCTAATGTCCTACACACTGG 60.429 52.174 0.00 0.00 38.04 4.00
9312 12239 3.428999 CCGTCCTAATGTCCTACACACTG 60.429 52.174 0.00 0.00 38.04 3.66
9313 12240 2.758979 CCGTCCTAATGTCCTACACACT 59.241 50.000 0.00 0.00 38.04 3.55
9314 12241 2.159142 CCCGTCCTAATGTCCTACACAC 60.159 54.545 0.00 0.00 38.04 3.82
9315 12242 2.104967 CCCGTCCTAATGTCCTACACA 58.895 52.381 0.00 0.00 40.18 3.72
9316 12243 2.381911 TCCCGTCCTAATGTCCTACAC 58.618 52.381 0.00 0.00 0.00 2.90
9317 12244 2.832643 TCCCGTCCTAATGTCCTACA 57.167 50.000 0.00 0.00 0.00 2.74
9318 12245 3.896272 AGAATCCCGTCCTAATGTCCTAC 59.104 47.826 0.00 0.00 0.00 3.18
9319 12246 4.194678 AGAATCCCGTCCTAATGTCCTA 57.805 45.455 0.00 0.00 0.00 2.94
9320 12247 3.047695 AGAATCCCGTCCTAATGTCCT 57.952 47.619 0.00 0.00 0.00 3.85
9321 12248 5.238583 CAATAGAATCCCGTCCTAATGTCC 58.761 45.833 0.00 0.00 0.00 4.02
9322 12249 4.691216 GCAATAGAATCCCGTCCTAATGTC 59.309 45.833 0.00 0.00 0.00 3.06
9323 12250 4.348168 AGCAATAGAATCCCGTCCTAATGT 59.652 41.667 0.00 0.00 0.00 2.71
9324 12251 4.692625 CAGCAATAGAATCCCGTCCTAATG 59.307 45.833 0.00 0.00 0.00 1.90
9325 12252 4.593206 TCAGCAATAGAATCCCGTCCTAAT 59.407 41.667 0.00 0.00 0.00 1.73
9326 12253 3.964688 TCAGCAATAGAATCCCGTCCTAA 59.035 43.478 0.00 0.00 0.00 2.69
9327 12254 3.572642 TCAGCAATAGAATCCCGTCCTA 58.427 45.455 0.00 0.00 0.00 2.94
9328 12255 2.398588 TCAGCAATAGAATCCCGTCCT 58.601 47.619 0.00 0.00 0.00 3.85
9329 12256 2.910688 TCAGCAATAGAATCCCGTCC 57.089 50.000 0.00 0.00 0.00 4.79
9330 12257 5.049818 CAGATTTCAGCAATAGAATCCCGTC 60.050 44.000 0.00 0.00 0.00 4.79
9372 12352 7.010738 CCCAAACGCTCTTATATTTCTTTACGA 59.989 37.037 0.00 0.00 0.00 3.43
9423 12423 6.150396 AGAACTTAGGTGATCTAATGACCG 57.850 41.667 0.00 0.00 37.33 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.