Multiple sequence alignment - TraesCS1D01G063500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G063500 chr1D 100.000 2488 0 0 1 2488 43305213 43307700 0.000000e+00 4595.0
1 TraesCS1D01G063500 chr1D 87.500 1248 121 25 459 1701 44628763 44629980 0.000000e+00 1408.0
2 TraesCS1D01G063500 chr1D 89.488 1094 93 12 616 1701 43823105 43824184 0.000000e+00 1363.0
3 TraesCS1D01G063500 chr1D 95.918 147 6 0 1 147 43288623 43288769 3.200000e-59 239.0
4 TraesCS1D01G063500 chr1D 96.429 56 2 0 2433 2488 87629223 87629168 2.630000e-15 93.5
5 TraesCS1D01G063500 chr1A 94.169 2298 121 11 149 2437 42669913 42672206 0.000000e+00 3489.0
6 TraesCS1D01G063500 chr1A 94.524 1680 85 5 765 2437 42721111 42722790 0.000000e+00 2586.0
7 TraesCS1D01G063500 chr1A 94.405 1680 86 6 765 2437 42685948 42687626 0.000000e+00 2575.0
8 TraesCS1D01G063500 chr1A 87.812 1362 129 19 338 1682 43392688 43391347 0.000000e+00 1561.0
9 TraesCS1D01G063500 chr1A 87.391 1380 139 19 338 1701 43272071 43270711 0.000000e+00 1552.0
10 TraesCS1D01G063500 chr1A 95.476 840 38 0 765 1604 42695242 42696081 0.000000e+00 1341.0
11 TraesCS1D01G063500 chr1A 93.341 871 51 5 1574 2437 42696080 42696950 0.000000e+00 1280.0
12 TraesCS1D01G063500 chr1A 91.935 620 44 6 149 766 42683293 42683908 0.000000e+00 863.0
13 TraesCS1D01G063500 chr1A 91.290 620 43 7 149 766 42692643 42693253 0.000000e+00 835.0
14 TraesCS1D01G063500 chr1A 91.129 620 48 7 149 766 42718459 42719073 0.000000e+00 833.0
15 TraesCS1D01G063500 chr1B 91.770 1944 150 10 150 2090 63201394 63203330 0.000000e+00 2695.0
16 TraesCS1D01G063500 chr1B 87.572 1392 140 22 326 1701 63888648 63890022 0.000000e+00 1581.0
17 TraesCS1D01G063500 chr1B 87.347 1391 141 22 326 1701 63479349 63480719 0.000000e+00 1561.0
18 TraesCS1D01G063500 chr1B 86.700 1391 150 24 326 1701 63613759 63615129 0.000000e+00 1511.0
19 TraesCS1D01G063500 chr1B 85.612 278 28 12 338 610 63201492 63201762 5.240000e-72 281.0
20 TraesCS1D01G063500 chr1B 87.591 137 14 3 2123 2258 63217191 63217325 3.310000e-34 156.0
21 TraesCS1D01G063500 chr5B 79.378 1673 265 52 422 2066 600727509 600729129 0.000000e+00 1105.0
22 TraesCS1D01G063500 chr5A 79.345 1680 256 58 422 2066 608949799 608951422 0.000000e+00 1096.0
23 TraesCS1D01G063500 chr7D 97.279 147 4 0 1 147 236804391 236804537 1.480000e-62 250.0
24 TraesCS1D01G063500 chr7D 98.077 52 1 0 2437 2488 353544589 353544640 9.480000e-15 91.6
25 TraesCS1D01G063500 chr7B 96.644 149 5 0 1 149 124751429 124751577 5.310000e-62 248.0
26 TraesCS1D01G063500 chr5D 96.599 147 5 0 1 147 266391414 266391268 6.870000e-61 244.0
27 TraesCS1D01G063500 chr5D 96.552 145 5 0 3 147 83865129 83865273 8.890000e-60 241.0
28 TraesCS1D01G063500 chr4D 96.599 147 5 0 1 147 122005531 122005677 6.870000e-61 244.0
29 TraesCS1D01G063500 chr4D 95.918 147 6 0 1 147 121987517 121987663 3.200000e-59 239.0
30 TraesCS1D01G063500 chr4D 96.364 55 0 2 2434 2488 24579104 24579052 3.410000e-14 89.8
31 TraesCS1D01G063500 chr4D 92.188 64 2 3 2425 2488 226795365 226795425 1.230000e-13 87.9
32 TraesCS1D01G063500 chr2D 96.599 147 5 0 1 147 206912629 206912775 6.870000e-61 244.0
33 TraesCS1D01G063500 chr2D 98.113 53 1 0 2436 2488 400150105 400150157 2.630000e-15 93.5
34 TraesCS1D01G063500 chr3A 95.918 147 6 0 1 147 459999029 459999175 3.200000e-59 239.0
35 TraesCS1D01G063500 chr3D 96.491 57 1 1 2433 2488 68188642 68188698 2.630000e-15 93.5
36 TraesCS1D01G063500 chr3D 98.077 52 1 0 2437 2488 202922727 202922778 9.480000e-15 91.6
37 TraesCS1D01G063500 chr6D 98.077 52 1 0 2437 2488 221284848 221284797 9.480000e-15 91.6
38 TraesCS1D01G063500 chr6D 96.364 55 1 1 2434 2488 261005263 261005210 3.410000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G063500 chr1D 43305213 43307700 2487 False 4595.0 4595 100.0000 1 2488 1 chr1D.!!$F2 2487
1 TraesCS1D01G063500 chr1D 44628763 44629980 1217 False 1408.0 1408 87.5000 459 1701 1 chr1D.!!$F4 1242
2 TraesCS1D01G063500 chr1D 43823105 43824184 1079 False 1363.0 1363 89.4880 616 1701 1 chr1D.!!$F3 1085
3 TraesCS1D01G063500 chr1A 42669913 42672206 2293 False 3489.0 3489 94.1690 149 2437 1 chr1A.!!$F1 2288
4 TraesCS1D01G063500 chr1A 42683293 42687626 4333 False 1719.0 2575 93.1700 149 2437 2 chr1A.!!$F2 2288
5 TraesCS1D01G063500 chr1A 42718459 42722790 4331 False 1709.5 2586 92.8265 149 2437 2 chr1A.!!$F4 2288
6 TraesCS1D01G063500 chr1A 43391347 43392688 1341 True 1561.0 1561 87.8120 338 1682 1 chr1A.!!$R2 1344
7 TraesCS1D01G063500 chr1A 43270711 43272071 1360 True 1552.0 1552 87.3910 338 1701 1 chr1A.!!$R1 1363
8 TraesCS1D01G063500 chr1A 42692643 42696950 4307 False 1152.0 1341 93.3690 149 2437 3 chr1A.!!$F3 2288
9 TraesCS1D01G063500 chr1B 63888648 63890022 1374 False 1581.0 1581 87.5720 326 1701 1 chr1B.!!$F4 1375
10 TraesCS1D01G063500 chr1B 63479349 63480719 1370 False 1561.0 1561 87.3470 326 1701 1 chr1B.!!$F2 1375
11 TraesCS1D01G063500 chr1B 63613759 63615129 1370 False 1511.0 1511 86.7000 326 1701 1 chr1B.!!$F3 1375
12 TraesCS1D01G063500 chr1B 63201394 63203330 1936 False 1488.0 2695 88.6910 150 2090 2 chr1B.!!$F5 1940
13 TraesCS1D01G063500 chr5B 600727509 600729129 1620 False 1105.0 1105 79.3780 422 2066 1 chr5B.!!$F1 1644
14 TraesCS1D01G063500 chr5A 608949799 608951422 1623 False 1096.0 1096 79.3450 422 2066 1 chr5A.!!$F1 1644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.031857 TCTTGGTTGGCAATGCAACG 59.968 50.0 7.79 0.0 32.5 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 3958 0.46729 TTGACCCCTTCACCTGCAAC 60.467 55.0 0.0 0.0 32.26 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.264543 CCTCGCAACTTGATGTAATGTC 57.735 45.455 0.00 0.00 0.00 3.06
22 23 3.242091 CCTCGCAACTTGATGTAATGTCG 60.242 47.826 0.00 0.00 0.00 4.35
23 24 2.093625 TCGCAACTTGATGTAATGTCGC 59.906 45.455 0.00 0.00 0.00 5.19
24 25 2.159720 CGCAACTTGATGTAATGTCGCA 60.160 45.455 0.00 0.00 0.00 5.10
25 26 3.163594 GCAACTTGATGTAATGTCGCAC 58.836 45.455 0.00 0.00 0.00 5.34
26 27 3.120199 GCAACTTGATGTAATGTCGCACT 60.120 43.478 0.00 0.00 0.00 4.40
27 28 4.092821 GCAACTTGATGTAATGTCGCACTA 59.907 41.667 0.00 0.00 0.00 2.74
28 29 5.220662 GCAACTTGATGTAATGTCGCACTAT 60.221 40.000 0.00 0.00 0.00 2.12
29 30 5.973651 ACTTGATGTAATGTCGCACTATG 57.026 39.130 0.00 0.00 0.00 2.23
30 31 4.271049 ACTTGATGTAATGTCGCACTATGC 59.729 41.667 0.00 0.00 40.69 3.14
31 32 4.058721 TGATGTAATGTCGCACTATGCT 57.941 40.909 0.00 0.00 42.25 3.79
32 33 4.441792 TGATGTAATGTCGCACTATGCTT 58.558 39.130 0.00 0.00 42.25 3.91
33 34 4.875536 TGATGTAATGTCGCACTATGCTTT 59.124 37.500 0.00 0.00 42.25 3.51
34 35 4.857871 TGTAATGTCGCACTATGCTTTC 57.142 40.909 0.00 0.00 42.25 2.62
35 36 3.305897 TGTAATGTCGCACTATGCTTTCG 59.694 43.478 0.00 0.00 42.25 3.46
36 37 0.652592 ATGTCGCACTATGCTTTCGC 59.347 50.000 0.00 0.00 42.25 4.70
37 38 0.389817 TGTCGCACTATGCTTTCGCT 60.390 50.000 0.00 0.00 42.25 4.93
38 39 1.135228 TGTCGCACTATGCTTTCGCTA 60.135 47.619 0.00 0.00 42.25 4.26
39 40 1.518929 GTCGCACTATGCTTTCGCTAG 59.481 52.381 0.00 0.00 42.25 3.42
40 41 1.134367 TCGCACTATGCTTTCGCTAGT 59.866 47.619 0.00 0.00 42.25 2.57
41 42 1.927174 CGCACTATGCTTTCGCTAGTT 59.073 47.619 0.00 0.00 42.25 2.24
42 43 2.348666 CGCACTATGCTTTCGCTAGTTT 59.651 45.455 0.00 0.00 42.25 2.66
43 44 3.542291 CGCACTATGCTTTCGCTAGTTTC 60.542 47.826 0.00 0.00 42.25 2.78
44 45 3.370978 GCACTATGCTTTCGCTAGTTTCA 59.629 43.478 0.00 0.00 40.96 2.69
45 46 4.142902 GCACTATGCTTTCGCTAGTTTCAA 60.143 41.667 0.00 0.00 40.96 2.69
46 47 5.447818 GCACTATGCTTTCGCTAGTTTCAAT 60.448 40.000 0.00 0.00 40.96 2.57
47 48 6.238103 GCACTATGCTTTCGCTAGTTTCAATA 60.238 38.462 0.00 0.00 40.96 1.90
48 49 7.676338 GCACTATGCTTTCGCTAGTTTCAATAA 60.676 37.037 0.00 0.00 40.96 1.40
49 50 8.175069 CACTATGCTTTCGCTAGTTTCAATAAA 58.825 33.333 0.00 0.00 36.97 1.40
50 51 8.391106 ACTATGCTTTCGCTAGTTTCAATAAAG 58.609 33.333 0.00 0.00 36.97 1.85
51 52 5.390613 TGCTTTCGCTAGTTTCAATAAAGC 58.609 37.500 9.34 9.34 44.61 3.51
52 53 4.492294 GCTTTCGCTAGTTTCAATAAAGCG 59.508 41.667 8.61 8.61 38.31 4.68
53 54 4.593597 TTCGCTAGTTTCAATAAAGCGG 57.406 40.909 14.16 0.00 37.38 5.52
54 55 3.592059 TCGCTAGTTTCAATAAAGCGGT 58.408 40.909 14.16 0.00 37.38 5.68
55 56 3.369756 TCGCTAGTTTCAATAAAGCGGTG 59.630 43.478 14.16 0.00 37.38 4.94
56 57 3.369756 CGCTAGTTTCAATAAAGCGGTGA 59.630 43.478 7.11 0.00 34.78 4.02
57 58 4.034048 CGCTAGTTTCAATAAAGCGGTGAT 59.966 41.667 7.11 0.00 34.78 3.06
58 59 5.447279 CGCTAGTTTCAATAAAGCGGTGATT 60.447 40.000 7.11 0.00 34.78 2.57
59 60 6.322491 GCTAGTTTCAATAAAGCGGTGATTT 58.678 36.000 0.00 0.00 0.00 2.17
60 61 6.469275 GCTAGTTTCAATAAAGCGGTGATTTC 59.531 38.462 0.00 0.00 0.00 2.17
61 62 6.575162 AGTTTCAATAAAGCGGTGATTTCT 57.425 33.333 0.00 0.00 0.00 2.52
62 63 6.381801 AGTTTCAATAAAGCGGTGATTTCTG 58.618 36.000 0.00 0.00 0.00 3.02
63 64 5.957842 TTCAATAAAGCGGTGATTTCTGT 57.042 34.783 0.00 0.00 0.00 3.41
64 65 7.174253 AGTTTCAATAAAGCGGTGATTTCTGTA 59.826 33.333 0.00 0.00 0.00 2.74
65 66 6.417191 TCAATAAAGCGGTGATTTCTGTAC 57.583 37.500 0.00 0.00 0.00 2.90
66 67 5.353123 TCAATAAAGCGGTGATTTCTGTACC 59.647 40.000 0.00 0.00 0.00 3.34
67 68 2.851263 AAGCGGTGATTTCTGTACCA 57.149 45.000 0.00 0.00 34.10 3.25
68 69 2.851263 AGCGGTGATTTCTGTACCAA 57.149 45.000 0.00 0.00 34.10 3.67
69 70 2.699954 AGCGGTGATTTCTGTACCAAG 58.300 47.619 0.00 0.00 34.10 3.61
70 71 2.301870 AGCGGTGATTTCTGTACCAAGA 59.698 45.455 0.00 0.00 34.10 3.02
71 72 3.055094 AGCGGTGATTTCTGTACCAAGAT 60.055 43.478 0.00 0.00 34.10 2.40
72 73 3.063997 GCGGTGATTTCTGTACCAAGATG 59.936 47.826 0.00 0.00 34.10 2.90
73 74 4.253685 CGGTGATTTCTGTACCAAGATGT 58.746 43.478 0.00 0.00 34.10 3.06
74 75 4.695455 CGGTGATTTCTGTACCAAGATGTT 59.305 41.667 0.00 0.00 34.10 2.71
75 76 5.390885 CGGTGATTTCTGTACCAAGATGTTG 60.391 44.000 0.00 0.00 34.10 3.33
76 77 5.473504 GGTGATTTCTGTACCAAGATGTTGT 59.526 40.000 1.49 0.00 34.61 3.32
77 78 6.373779 GTGATTTCTGTACCAAGATGTTGTG 58.626 40.000 1.49 0.00 30.95 3.33
78 79 6.017109 GTGATTTCTGTACCAAGATGTTGTGT 60.017 38.462 1.49 2.39 30.95 3.72
79 80 5.749596 TTTCTGTACCAAGATGTTGTGTG 57.250 39.130 1.49 0.00 30.95 3.82
80 81 4.415881 TCTGTACCAAGATGTTGTGTGT 57.584 40.909 1.49 0.00 30.95 3.72
81 82 4.776349 TCTGTACCAAGATGTTGTGTGTT 58.224 39.130 1.49 0.00 30.95 3.32
82 83 4.574421 TCTGTACCAAGATGTTGTGTGTTG 59.426 41.667 1.49 0.00 30.95 3.33
83 84 2.869233 ACCAAGATGTTGTGTGTTGC 57.131 45.000 1.49 0.00 30.95 4.17
84 85 1.408702 ACCAAGATGTTGTGTGTTGCC 59.591 47.619 1.49 0.00 30.95 4.52
85 86 1.408340 CCAAGATGTTGTGTGTTGCCA 59.592 47.619 1.49 0.00 30.95 4.92
86 87 2.544277 CCAAGATGTTGTGTGTTGCCAG 60.544 50.000 1.49 0.00 30.95 4.85
87 88 2.346766 AGATGTTGTGTGTTGCCAGA 57.653 45.000 0.00 0.00 0.00 3.86
88 89 2.653726 AGATGTTGTGTGTTGCCAGAA 58.346 42.857 0.00 0.00 0.00 3.02
89 90 2.620115 AGATGTTGTGTGTTGCCAGAAG 59.380 45.455 0.00 0.00 0.00 2.85
90 91 2.121291 TGTTGTGTGTTGCCAGAAGA 57.879 45.000 0.00 0.00 0.00 2.87
91 92 1.742831 TGTTGTGTGTTGCCAGAAGAC 59.257 47.619 0.00 0.00 0.00 3.01
92 93 1.742831 GTTGTGTGTTGCCAGAAGACA 59.257 47.619 0.00 0.00 0.00 3.41
93 94 2.346766 TGTGTGTTGCCAGAAGACAT 57.653 45.000 0.00 0.00 0.00 3.06
94 95 1.948834 TGTGTGTTGCCAGAAGACATG 59.051 47.619 0.00 0.00 0.00 3.21
95 96 2.221169 GTGTGTTGCCAGAAGACATGA 58.779 47.619 0.00 0.00 0.00 3.07
96 97 2.816087 GTGTGTTGCCAGAAGACATGAT 59.184 45.455 0.00 0.00 0.00 2.45
97 98 3.076621 TGTGTTGCCAGAAGACATGATC 58.923 45.455 0.00 0.00 0.00 2.92
98 99 3.244665 TGTGTTGCCAGAAGACATGATCT 60.245 43.478 0.00 0.00 40.46 2.75
99 100 3.373439 GTGTTGCCAGAAGACATGATCTC 59.627 47.826 0.00 0.00 36.27 2.75
100 101 3.262660 TGTTGCCAGAAGACATGATCTCT 59.737 43.478 0.00 0.00 36.27 3.10
101 102 4.260170 GTTGCCAGAAGACATGATCTCTT 58.740 43.478 0.00 0.00 36.27 2.85
102 103 3.870274 TGCCAGAAGACATGATCTCTTG 58.130 45.455 0.00 1.68 36.27 3.02
103 104 3.204526 GCCAGAAGACATGATCTCTTGG 58.795 50.000 0.00 10.65 40.99 3.61
104 105 3.370315 GCCAGAAGACATGATCTCTTGGT 60.370 47.826 0.00 0.00 40.52 3.67
105 106 4.841422 CCAGAAGACATGATCTCTTGGTT 58.159 43.478 0.00 0.00 36.27 3.67
106 107 4.634883 CCAGAAGACATGATCTCTTGGTTG 59.365 45.833 0.00 0.00 36.27 3.77
107 108 4.634883 CAGAAGACATGATCTCTTGGTTGG 59.365 45.833 0.00 0.00 36.27 3.77
108 109 2.996631 AGACATGATCTCTTGGTTGGC 58.003 47.619 0.00 0.00 28.16 4.52
109 110 2.306805 AGACATGATCTCTTGGTTGGCA 59.693 45.455 0.00 0.00 28.16 4.92
110 111 3.084039 GACATGATCTCTTGGTTGGCAA 58.916 45.455 0.00 0.00 0.00 4.52
111 112 3.698040 GACATGATCTCTTGGTTGGCAAT 59.302 43.478 1.92 0.00 0.00 3.56
112 113 3.446161 ACATGATCTCTTGGTTGGCAATG 59.554 43.478 1.92 0.00 0.00 2.82
113 114 1.820519 TGATCTCTTGGTTGGCAATGC 59.179 47.619 1.92 0.00 0.00 3.56
114 115 1.820519 GATCTCTTGGTTGGCAATGCA 59.179 47.619 7.79 0.00 0.00 3.96
115 116 1.702182 TCTCTTGGTTGGCAATGCAA 58.298 45.000 7.79 0.00 0.00 4.08
116 117 1.340889 TCTCTTGGTTGGCAATGCAAC 59.659 47.619 7.79 9.53 0.00 4.17
117 118 0.031857 TCTTGGTTGGCAATGCAACG 59.968 50.000 7.79 0.00 32.50 4.10
118 119 0.249405 CTTGGTTGGCAATGCAACGT 60.249 50.000 7.79 0.00 32.50 3.99
119 120 1.000827 CTTGGTTGGCAATGCAACGTA 60.001 47.619 7.79 0.67 32.50 3.57
120 121 1.032794 TGGTTGGCAATGCAACGTAA 58.967 45.000 7.79 0.00 32.50 3.18
121 122 1.409064 TGGTTGGCAATGCAACGTAAA 59.591 42.857 7.79 0.00 32.50 2.01
122 123 1.790043 GGTTGGCAATGCAACGTAAAC 59.210 47.619 7.79 1.51 32.50 2.01
123 124 1.790043 GTTGGCAATGCAACGTAAACC 59.210 47.619 7.79 0.00 0.00 3.27
124 125 0.039978 TGGCAATGCAACGTAAACCG 60.040 50.000 7.79 0.00 44.03 4.44
125 126 0.731174 GGCAATGCAACGTAAACCGG 60.731 55.000 7.79 0.00 42.24 5.28
126 127 0.039888 GCAATGCAACGTAAACCGGT 60.040 50.000 0.00 0.00 42.24 5.28
127 128 1.958417 CAATGCAACGTAAACCGGTC 58.042 50.000 8.04 0.00 42.24 4.79
128 129 0.513820 AATGCAACGTAAACCGGTCG 59.486 50.000 8.04 10.60 42.24 4.79
129 130 1.903783 ATGCAACGTAAACCGGTCGC 61.904 55.000 8.04 2.85 42.24 5.19
130 131 2.312436 GCAACGTAAACCGGTCGCT 61.312 57.895 8.04 0.00 42.24 4.93
131 132 1.777199 CAACGTAAACCGGTCGCTC 59.223 57.895 8.04 0.00 42.24 5.03
132 133 0.665369 CAACGTAAACCGGTCGCTCT 60.665 55.000 8.04 0.00 42.24 4.09
133 134 0.665369 AACGTAAACCGGTCGCTCTG 60.665 55.000 8.04 0.00 42.24 3.35
134 135 1.210931 CGTAAACCGGTCGCTCTGA 59.789 57.895 8.04 0.00 0.00 3.27
135 136 0.797249 CGTAAACCGGTCGCTCTGAG 60.797 60.000 8.04 0.00 0.00 3.35
136 137 1.077089 GTAAACCGGTCGCTCTGAGC 61.077 60.000 19.53 19.53 41.76 4.26
137 138 2.221906 TAAACCGGTCGCTCTGAGCC 62.222 60.000 22.97 10.44 42.19 4.70
152 153 4.123545 GCCGGGGTGCCATAGGTT 62.124 66.667 2.18 0.00 0.00 3.50
165 166 6.320164 GGTGCCATAGGTTCATTAATGTACAA 59.680 38.462 22.03 12.58 30.75 2.41
219 222 8.269317 AGGATTCAATGCATATTTCCAAATTGT 58.731 29.630 15.97 0.00 0.00 2.71
257 260 6.460664 GCAATTTGCGGTTAATTTTGTAGT 57.539 33.333 5.49 0.00 31.71 2.73
406 410 7.936496 TTTGATGCAGTACCATATCTTCAAA 57.064 32.000 0.00 0.00 32.29 2.69
448 452 0.174845 TGTACGCCTGTAGATGTGCC 59.825 55.000 0.00 0.00 0.00 5.01
541 643 8.417273 TGTAGCCTGTAGATATGCAACTAATA 57.583 34.615 0.00 0.00 0.00 0.98
619 725 7.990917 ACAACTAATGTGTGTAAAATGTGTCA 58.009 30.769 0.00 0.00 41.93 3.58
662 772 6.254157 ACATTCATTGTTTGATGCTATTTCGC 59.746 34.615 0.00 0.00 33.74 4.70
722 870 9.624697 ATGTACACATTCATTGTTTGATACAAC 57.375 29.630 0.00 0.00 40.52 3.32
823 3022 6.390721 ACACGGTGCTATATCTTCATGATAC 58.609 40.000 8.30 0.00 40.12 2.24
968 3181 8.609617 TTCTAACATCAAAGGGATAGAGAAGA 57.390 34.615 0.00 0.00 33.95 2.87
1318 3531 9.269453 GCGGAAGTAAGTGAAATATATTAAGGT 57.731 33.333 0.00 0.00 0.00 3.50
1480 3694 2.092914 CAGGTTACACATTCCCTCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
1575 3791 5.574188 AGAGCTTCCCTTTCACATTTGTAT 58.426 37.500 0.00 0.00 0.00 2.29
1587 3803 5.996219 TCACATTTGTATTTCGTGAGGTTG 58.004 37.500 0.00 0.00 32.99 3.77
1650 3895 9.498307 AACGTTTGTGAAACTAATAAAGTCTTG 57.502 29.630 0.00 0.00 37.50 3.02
1654 3899 7.739498 TGTGAAACTAATAAAGTCTTGTCCC 57.261 36.000 0.00 0.00 37.50 4.46
1675 3920 9.535170 TGTCCCCAAATTGTCTAAATTATGTTA 57.465 29.630 0.00 0.00 0.00 2.41
1711 3958 9.398170 CAATATTTTGGTTCTATTTATGGCTCG 57.602 33.333 0.00 0.00 0.00 5.03
1726 3973 1.672356 CTCGTTGCAGGTGAAGGGG 60.672 63.158 0.00 0.00 0.00 4.79
1744 3991 6.099845 TGAAGGGGTCAAGGATATTAGAAGAC 59.900 42.308 0.00 0.00 31.51 3.01
1893 4141 8.773645 GCAAAGCTCCAAATACAACTTAATTTT 58.226 29.630 0.00 0.00 0.00 1.82
2142 4394 9.323985 AGCTTATTCTTCTGTAGCTTAATCTTG 57.676 33.333 0.00 0.00 38.99 3.02
2166 4418 0.968405 TTCATTGGCTTGGGCTTGAC 59.032 50.000 0.00 0.00 38.73 3.18
2185 4437 1.614903 ACGATTTCCACGTAGACACCA 59.385 47.619 0.00 0.00 42.17 4.17
2230 4482 5.068723 TCGGGTAGGACTTTTCTATGACATC 59.931 44.000 0.00 0.00 0.00 3.06
2263 4519 6.689663 AAGGTAAGAAGGCTCTACTTTTCT 57.310 37.500 6.82 0.00 0.00 2.52
2290 4546 8.475639 TCTCTGTGACTAAGGGAACATTAATAC 58.524 37.037 0.00 0.00 0.00 1.89
2311 4567 5.424121 ACAGAAACAGTTAGAACATGCAC 57.576 39.130 0.00 0.00 0.00 4.57
2313 4569 5.532406 ACAGAAACAGTTAGAACATGCACAT 59.468 36.000 0.00 0.00 0.00 3.21
2342 4598 3.203059 AGAGGGAGGAGGAGAGTTAAGA 58.797 50.000 0.00 0.00 0.00 2.10
2428 4685 2.376808 AGATGAGCAACAGAAGGACG 57.623 50.000 0.00 0.00 0.00 4.79
2445 4702 3.713936 CGATAGTCTGGCGTTGTCA 57.286 52.632 0.00 0.00 0.00 3.58
2446 4703 1.269166 CGATAGTCTGGCGTTGTCAC 58.731 55.000 0.00 0.00 0.00 3.67
2456 4713 3.895806 CGTTGTCACGCCCAATATG 57.104 52.632 0.00 0.00 40.18 1.78
2457 4714 0.248054 CGTTGTCACGCCCAATATGC 60.248 55.000 0.00 0.00 40.18 3.14
2465 4722 3.957288 GCCCAATATGCGACCCTAT 57.043 52.632 0.00 0.00 0.00 2.57
2466 4723 1.739067 GCCCAATATGCGACCCTATC 58.261 55.000 0.00 0.00 0.00 2.08
2467 4724 1.679032 GCCCAATATGCGACCCTATCC 60.679 57.143 0.00 0.00 0.00 2.59
2468 4725 1.405526 CCCAATATGCGACCCTATCCG 60.406 57.143 0.00 0.00 0.00 4.18
2469 4726 1.548719 CCAATATGCGACCCTATCCGA 59.451 52.381 0.00 0.00 0.00 4.55
2470 4727 2.417379 CCAATATGCGACCCTATCCGAG 60.417 54.545 0.00 0.00 0.00 4.63
2471 4728 2.492088 CAATATGCGACCCTATCCGAGA 59.508 50.000 0.00 0.00 0.00 4.04
2472 4729 1.822506 TATGCGACCCTATCCGAGAG 58.177 55.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.242091 CGACATTACATCAAGTTGCGAGG 60.242 47.826 0.00 0.00 0.00 4.63
1 2 3.782250 GCGACATTACATCAAGTTGCGAG 60.782 47.826 0.00 0.00 32.35 5.03
2 3 2.093625 GCGACATTACATCAAGTTGCGA 59.906 45.455 0.00 0.00 32.35 5.10
3 4 2.159720 TGCGACATTACATCAAGTTGCG 60.160 45.455 0.00 0.00 42.82 4.85
4 5 3.120199 AGTGCGACATTACATCAAGTTGC 60.120 43.478 0.00 0.00 40.84 4.17
5 6 4.668576 AGTGCGACATTACATCAAGTTG 57.331 40.909 0.00 0.00 0.00 3.16
6 7 5.220662 GCATAGTGCGACATTACATCAAGTT 60.221 40.000 0.00 0.00 31.71 2.66
7 8 4.271049 GCATAGTGCGACATTACATCAAGT 59.729 41.667 0.00 0.00 31.71 3.16
8 9 4.766007 GCATAGTGCGACATTACATCAAG 58.234 43.478 0.00 0.00 31.71 3.02
9 10 4.794248 GCATAGTGCGACATTACATCAA 57.206 40.909 0.00 0.00 31.71 2.57
30 31 5.022021 CCGCTTTATTGAAACTAGCGAAAG 58.978 41.667 15.40 0.00 38.38 2.62
31 32 4.453136 ACCGCTTTATTGAAACTAGCGAAA 59.547 37.500 15.40 0.00 38.38 3.46
32 33 3.998341 ACCGCTTTATTGAAACTAGCGAA 59.002 39.130 15.40 0.00 38.38 4.70
33 34 3.369756 CACCGCTTTATTGAAACTAGCGA 59.630 43.478 15.40 0.00 38.38 4.93
34 35 3.369756 TCACCGCTTTATTGAAACTAGCG 59.630 43.478 7.73 7.73 36.83 4.26
35 36 4.939509 TCACCGCTTTATTGAAACTAGC 57.060 40.909 0.00 0.00 0.00 3.42
36 37 7.693951 CAGAAATCACCGCTTTATTGAAACTAG 59.306 37.037 0.00 0.00 0.00 2.57
37 38 7.174253 ACAGAAATCACCGCTTTATTGAAACTA 59.826 33.333 0.00 0.00 0.00 2.24
38 39 6.016276 ACAGAAATCACCGCTTTATTGAAACT 60.016 34.615 0.00 0.00 0.00 2.66
39 40 6.149633 ACAGAAATCACCGCTTTATTGAAAC 58.850 36.000 0.00 0.00 0.00 2.78
40 41 6.325919 ACAGAAATCACCGCTTTATTGAAA 57.674 33.333 0.00 0.00 0.00 2.69
41 42 5.957842 ACAGAAATCACCGCTTTATTGAA 57.042 34.783 0.00 0.00 0.00 2.69
42 43 5.353123 GGTACAGAAATCACCGCTTTATTGA 59.647 40.000 0.00 0.00 0.00 2.57
43 44 5.123186 TGGTACAGAAATCACCGCTTTATTG 59.877 40.000 0.00 0.00 34.94 1.90
44 45 5.250200 TGGTACAGAAATCACCGCTTTATT 58.750 37.500 0.00 0.00 34.94 1.40
45 46 4.839121 TGGTACAGAAATCACCGCTTTAT 58.161 39.130 0.00 0.00 34.94 1.40
46 47 4.274602 TGGTACAGAAATCACCGCTTTA 57.725 40.909 0.00 0.00 34.94 1.85
47 48 3.134574 TGGTACAGAAATCACCGCTTT 57.865 42.857 0.00 0.00 34.94 3.51
48 49 2.851263 TGGTACAGAAATCACCGCTT 57.149 45.000 0.00 0.00 34.94 4.68
49 50 2.301870 TCTTGGTACAGAAATCACCGCT 59.698 45.455 0.00 0.00 42.39 5.52
50 51 2.695359 TCTTGGTACAGAAATCACCGC 58.305 47.619 0.00 0.00 42.39 5.68
51 52 4.253685 ACATCTTGGTACAGAAATCACCG 58.746 43.478 0.00 0.00 42.39 4.94
52 53 5.473504 ACAACATCTTGGTACAGAAATCACC 59.526 40.000 0.00 0.00 42.39 4.02
53 54 6.017109 ACACAACATCTTGGTACAGAAATCAC 60.017 38.462 0.00 0.00 42.39 3.06
54 55 6.017192 CACACAACATCTTGGTACAGAAATCA 60.017 38.462 0.00 0.00 42.39 2.57
55 56 6.017109 ACACACAACATCTTGGTACAGAAATC 60.017 38.462 0.00 0.00 42.39 2.17
56 57 5.827797 ACACACAACATCTTGGTACAGAAAT 59.172 36.000 0.00 0.00 42.39 2.17
57 58 5.189928 ACACACAACATCTTGGTACAGAAA 58.810 37.500 0.00 0.00 42.39 2.52
58 59 4.776349 ACACACAACATCTTGGTACAGAA 58.224 39.130 0.00 0.00 42.39 3.02
59 60 4.415881 ACACACAACATCTTGGTACAGA 57.584 40.909 0.00 0.00 42.39 3.41
60 61 4.789481 GCAACACACAACATCTTGGTACAG 60.789 45.833 0.00 0.00 42.39 2.74
61 62 3.066064 GCAACACACAACATCTTGGTACA 59.934 43.478 0.00 0.00 0.00 2.90
62 63 3.550030 GGCAACACACAACATCTTGGTAC 60.550 47.826 0.00 0.00 0.00 3.34
63 64 2.621055 GGCAACACACAACATCTTGGTA 59.379 45.455 0.00 0.00 0.00 3.25
64 65 1.408702 GGCAACACACAACATCTTGGT 59.591 47.619 0.00 0.00 0.00 3.67
65 66 1.408340 TGGCAACACACAACATCTTGG 59.592 47.619 0.00 0.00 46.17 3.61
66 67 2.358582 TCTGGCAACACACAACATCTTG 59.641 45.455 0.00 0.00 46.17 3.02
67 68 2.653726 TCTGGCAACACACAACATCTT 58.346 42.857 0.00 0.00 46.17 2.40
68 69 2.346766 TCTGGCAACACACAACATCT 57.653 45.000 0.00 0.00 46.17 2.90
69 70 2.618241 TCTTCTGGCAACACACAACATC 59.382 45.455 0.00 0.00 46.17 3.06
70 71 2.358898 GTCTTCTGGCAACACACAACAT 59.641 45.455 0.00 0.00 46.17 2.71
71 72 1.742831 GTCTTCTGGCAACACACAACA 59.257 47.619 0.00 0.00 46.17 3.33
72 73 1.742831 TGTCTTCTGGCAACACACAAC 59.257 47.619 0.00 0.00 46.17 3.32
73 74 2.121291 TGTCTTCTGGCAACACACAA 57.879 45.000 0.00 0.00 46.17 3.33
74 75 1.948834 CATGTCTTCTGGCAACACACA 59.051 47.619 0.00 0.00 46.17 3.72
75 76 2.221169 TCATGTCTTCTGGCAACACAC 58.779 47.619 0.00 0.00 46.17 3.82
76 77 2.636647 TCATGTCTTCTGGCAACACA 57.363 45.000 0.00 0.00 46.17 3.72
77 78 3.341823 AGATCATGTCTTCTGGCAACAC 58.658 45.455 0.00 0.00 35.75 3.32
78 79 3.262660 AGAGATCATGTCTTCTGGCAACA 59.737 43.478 0.00 0.00 40.82 3.33
79 80 3.871485 AGAGATCATGTCTTCTGGCAAC 58.129 45.455 0.00 0.00 37.29 4.17
80 81 4.259356 CAAGAGATCATGTCTTCTGGCAA 58.741 43.478 0.00 0.00 37.29 4.52
81 82 3.370209 CCAAGAGATCATGTCTTCTGGCA 60.370 47.826 0.00 0.00 37.29 4.92
82 83 3.204526 CCAAGAGATCATGTCTTCTGGC 58.795 50.000 0.00 0.00 37.29 4.85
83 84 4.484537 ACCAAGAGATCATGTCTTCTGG 57.515 45.455 16.40 16.40 41.41 3.86
84 85 4.634883 CCAACCAAGAGATCATGTCTTCTG 59.365 45.833 0.00 0.00 37.29 3.02
85 86 4.841422 CCAACCAAGAGATCATGTCTTCT 58.159 43.478 0.00 0.00 37.29 2.85
86 87 3.376546 GCCAACCAAGAGATCATGTCTTC 59.623 47.826 0.00 0.00 37.29 2.87
87 88 3.245016 TGCCAACCAAGAGATCATGTCTT 60.245 43.478 0.00 0.00 37.29 3.01
88 89 2.306805 TGCCAACCAAGAGATCATGTCT 59.693 45.455 0.00 0.00 40.81 3.41
89 90 2.715046 TGCCAACCAAGAGATCATGTC 58.285 47.619 0.00 0.00 0.00 3.06
90 91 2.885135 TGCCAACCAAGAGATCATGT 57.115 45.000 0.00 0.00 0.00 3.21
91 92 3.737047 GCATTGCCAACCAAGAGATCATG 60.737 47.826 0.00 0.00 36.76 3.07
92 93 2.429610 GCATTGCCAACCAAGAGATCAT 59.570 45.455 0.00 0.00 36.76 2.45
93 94 1.820519 GCATTGCCAACCAAGAGATCA 59.179 47.619 0.00 0.00 36.76 2.92
94 95 1.820519 TGCATTGCCAACCAAGAGATC 59.179 47.619 6.12 0.00 36.76 2.75
95 96 1.927487 TGCATTGCCAACCAAGAGAT 58.073 45.000 6.12 0.00 36.76 2.75
96 97 1.340889 GTTGCATTGCCAACCAAGAGA 59.659 47.619 6.12 0.00 39.27 3.10
97 98 1.787012 GTTGCATTGCCAACCAAGAG 58.213 50.000 6.12 0.00 39.27 2.85
98 99 0.031857 CGTTGCATTGCCAACCAAGA 59.968 50.000 6.12 0.00 41.50 3.02
99 100 0.249405 ACGTTGCATTGCCAACCAAG 60.249 50.000 6.12 2.07 41.50 3.61
100 101 1.032794 TACGTTGCATTGCCAACCAA 58.967 45.000 6.12 0.00 41.50 3.67
101 102 1.032794 TTACGTTGCATTGCCAACCA 58.967 45.000 6.12 0.00 41.50 3.67
102 103 1.790043 GTTTACGTTGCATTGCCAACC 59.210 47.619 6.12 0.00 41.50 3.77
103 104 1.790043 GGTTTACGTTGCATTGCCAAC 59.210 47.619 6.12 9.54 41.21 3.77
104 105 1.600663 CGGTTTACGTTGCATTGCCAA 60.601 47.619 6.12 0.00 37.93 4.52
105 106 0.039978 CGGTTTACGTTGCATTGCCA 60.040 50.000 6.12 0.00 37.93 4.92
106 107 0.731174 CCGGTTTACGTTGCATTGCC 60.731 55.000 6.12 0.00 42.24 4.52
107 108 0.039888 ACCGGTTTACGTTGCATTGC 60.040 50.000 0.00 0.46 42.24 3.56
108 109 1.723384 CGACCGGTTTACGTTGCATTG 60.723 52.381 9.42 0.00 42.24 2.82
109 110 0.513820 CGACCGGTTTACGTTGCATT 59.486 50.000 9.42 0.00 42.24 3.56
110 111 1.903783 GCGACCGGTTTACGTTGCAT 61.904 55.000 9.42 0.00 42.24 3.96
111 112 2.596795 GCGACCGGTTTACGTTGCA 61.597 57.895 9.42 0.00 42.24 4.08
112 113 2.171701 GCGACCGGTTTACGTTGC 59.828 61.111 9.42 0.00 42.24 4.17
113 114 0.665369 AGAGCGACCGGTTTACGTTG 60.665 55.000 9.42 0.00 42.24 4.10
114 115 0.665369 CAGAGCGACCGGTTTACGTT 60.665 55.000 9.42 5.75 42.24 3.99
115 116 1.080974 CAGAGCGACCGGTTTACGT 60.081 57.895 9.42 0.00 42.24 3.57
116 117 0.797249 CTCAGAGCGACCGGTTTACG 60.797 60.000 9.42 9.56 43.80 3.18
117 118 1.077089 GCTCAGAGCGACCGGTTTAC 61.077 60.000 9.42 0.55 0.00 2.01
118 119 1.214589 GCTCAGAGCGACCGGTTTA 59.785 57.895 9.42 0.00 0.00 2.01
119 120 2.048127 GCTCAGAGCGACCGGTTT 60.048 61.111 9.42 0.00 0.00 3.27
120 121 4.070552 GGCTCAGAGCGACCGGTT 62.071 66.667 16.47 0.00 43.62 4.44
130 131 3.993865 TATGGCACCCCGGCTCAGA 62.994 63.158 0.00 0.00 41.89 3.27
131 132 3.466791 CTATGGCACCCCGGCTCAG 62.467 68.421 0.00 0.00 41.89 3.35
132 133 3.479203 CTATGGCACCCCGGCTCA 61.479 66.667 0.00 0.00 41.89 4.26
133 134 4.256180 CCTATGGCACCCCGGCTC 62.256 72.222 0.00 0.00 41.89 4.70
135 136 4.123545 AACCTATGGCACCCCGGC 62.124 66.667 0.00 0.00 41.67 6.13
136 137 1.994885 ATGAACCTATGGCACCCCGG 61.995 60.000 0.00 0.00 0.00 5.73
137 138 0.106719 AATGAACCTATGGCACCCCG 60.107 55.000 0.00 0.00 0.00 5.73
138 139 3.306472 TTAATGAACCTATGGCACCCC 57.694 47.619 0.00 0.00 0.00 4.95
139 140 4.215109 ACATTAATGAACCTATGGCACCC 58.785 43.478 22.16 0.00 0.00 4.61
140 141 5.825679 TGTACATTAATGAACCTATGGCACC 59.174 40.000 22.16 0.00 0.00 5.01
141 142 6.935741 TGTACATTAATGAACCTATGGCAC 57.064 37.500 22.16 4.63 0.00 5.01
142 143 7.230510 GGATTGTACATTAATGAACCTATGGCA 59.769 37.037 22.16 0.00 0.00 4.92
143 144 7.230510 TGGATTGTACATTAATGAACCTATGGC 59.769 37.037 22.16 3.12 0.00 4.40
144 145 8.690203 TGGATTGTACATTAATGAACCTATGG 57.310 34.615 22.16 0.00 0.00 2.74
145 146 9.342308 ACTGGATTGTACATTAATGAACCTATG 57.658 33.333 22.16 6.71 0.00 2.23
146 147 9.342308 CACTGGATTGTACATTAATGAACCTAT 57.658 33.333 22.16 10.43 0.00 2.57
147 148 8.325787 ACACTGGATTGTACATTAATGAACCTA 58.674 33.333 22.16 0.99 0.00 3.08
216 219 7.201539 GCAAATTGCTACAATATTGCATCACAA 60.202 33.333 15.48 12.44 41.93 3.33
219 222 5.459434 CGCAAATTGCTACAATATTGCATCA 59.541 36.000 23.66 7.56 42.25 3.07
250 253 6.935741 AGTTGCACATCTACAAACTACAAA 57.064 33.333 0.00 0.00 0.00 2.83
257 260 9.660180 TGTATACATTAGTTGCACATCTACAAA 57.340 29.630 0.08 0.00 0.00 2.83
428 432 1.560923 GCACATCTACAGGCGTACAG 58.439 55.000 0.00 0.00 0.00 2.74
626 732 8.720909 TCAAACAATGAATGTGTACATTAACG 57.279 30.769 10.00 1.97 45.72 3.18
968 3181 5.578005 TTTTGTATCTGCTACGCTAGAGT 57.422 39.130 4.07 4.07 32.61 3.24
975 3188 4.084328 GCTATGGCTTTTGTATCTGCTACG 60.084 45.833 0.00 0.00 32.46 3.51
1318 3531 4.061596 TGCAATGCCGATCATCGTAATAA 58.938 39.130 6.25 0.00 38.40 1.40
1319 3532 3.658709 TGCAATGCCGATCATCGTAATA 58.341 40.909 6.25 0.00 38.40 0.98
1480 3694 3.729716 GCTAAACTAGAATCACTACGCCG 59.270 47.826 0.00 0.00 0.00 6.46
1575 3791 7.833786 ACTATTATGAGTACAACCTCACGAAA 58.166 34.615 0.00 0.00 43.86 3.46
1711 3958 0.467290 TTGACCCCTTCACCTGCAAC 60.467 55.000 0.00 0.00 32.26 4.17
1916 4167 5.053145 CACTTATCTTTCTCATCCCCTTCG 58.947 45.833 0.00 0.00 0.00 3.79
1982 4233 6.930667 AAACCGTTACAATTGAACTACACT 57.069 33.333 13.59 0.00 0.00 3.55
2071 4322 3.002348 GCTGCTAGTTGAAACACTTCGTT 59.998 43.478 0.00 0.00 40.50 3.85
2079 4330 2.933260 GAGCCTAGCTGCTAGTTGAAAC 59.067 50.000 29.21 14.46 42.95 2.78
2129 4381 7.436376 GCCAATGAAAATCCAAGATTAAGCTAC 59.564 37.037 0.00 0.00 0.00 3.58
2142 4394 1.556451 AGCCCAAGCCAATGAAAATCC 59.444 47.619 0.00 0.00 41.25 3.01
2166 4418 1.990563 GTGGTGTCTACGTGGAAATCG 59.009 52.381 2.06 0.00 0.00 3.34
2185 4437 0.976073 CATCCCACCTAGTCCCACGT 60.976 60.000 0.00 0.00 0.00 4.49
2230 4482 7.731054 AGAGCCTTCTTACCTTTGTGATATAG 58.269 38.462 0.00 0.00 0.00 1.31
2242 4494 6.703319 AGAAGAAAAGTAGAGCCTTCTTACC 58.297 40.000 0.00 0.00 40.18 2.85
2243 4495 7.544217 CAGAGAAGAAAAGTAGAGCCTTCTTAC 59.456 40.741 0.00 0.00 42.31 2.34
2263 4519 5.825593 AATGTTCCCTTAGTCACAGAGAA 57.174 39.130 0.00 0.00 0.00 2.87
2290 4546 5.422666 TGTGCATGTTCTAACTGTTTCTG 57.577 39.130 0.00 0.00 0.00 3.02
2306 4562 6.025539 TCCTCCCTCTTGTATATATGTGCAT 58.974 40.000 0.00 0.00 0.00 3.96
2311 4567 6.736581 TCTCCTCCTCCCTCTTGTATATATG 58.263 44.000 0.00 0.00 0.00 1.78
2313 4569 5.858408 ACTCTCCTCCTCCCTCTTGTATATA 59.142 44.000 0.00 0.00 0.00 0.86
2384 4641 9.185680 CTTTTGTAATTAGGGCTACTTTGGTAT 57.814 33.333 0.00 0.00 0.00 2.73
2407 4664 3.070018 CGTCCTTCTGTTGCTCATCTTT 58.930 45.455 0.00 0.00 0.00 2.52
2428 4685 1.269166 CGTGACAACGCCAGACTATC 58.731 55.000 0.00 0.00 43.98 2.08
2439 4696 3.622459 GCATATTGGGCGTGACAAC 57.378 52.632 0.00 0.00 0.00 3.32
2447 4704 1.679032 GGATAGGGTCGCATATTGGGC 60.679 57.143 0.00 0.00 0.00 5.36
2448 4705 1.405526 CGGATAGGGTCGCATATTGGG 60.406 57.143 0.00 0.00 0.00 4.12
2449 4706 1.548719 TCGGATAGGGTCGCATATTGG 59.451 52.381 0.00 0.00 0.00 3.16
2450 4707 2.492088 TCTCGGATAGGGTCGCATATTG 59.508 50.000 0.00 0.00 0.00 1.90
2451 4708 2.755655 CTCTCGGATAGGGTCGCATATT 59.244 50.000 0.00 0.00 0.00 1.28
2452 4709 2.370349 CTCTCGGATAGGGTCGCATAT 58.630 52.381 0.00 0.00 0.00 1.78
2453 4710 1.613520 CCTCTCGGATAGGGTCGCATA 60.614 57.143 1.58 0.00 0.00 3.14
2454 4711 0.896019 CCTCTCGGATAGGGTCGCAT 60.896 60.000 1.58 0.00 0.00 4.73
2455 4712 1.528542 CCTCTCGGATAGGGTCGCA 60.529 63.158 1.58 0.00 0.00 5.10
2456 4713 0.822532 TTCCTCTCGGATAGGGTCGC 60.823 60.000 9.32 0.00 39.58 5.19
2457 4714 0.953003 GTTCCTCTCGGATAGGGTCG 59.047 60.000 9.32 0.00 39.58 4.79
2458 4715 2.232399 GAGTTCCTCTCGGATAGGGTC 58.768 57.143 9.32 3.84 39.58 4.46
2459 4716 2.368311 GAGTTCCTCTCGGATAGGGT 57.632 55.000 9.32 0.00 39.58 4.34
2468 4725 0.818938 GGGACCTTCGAGTTCCTCTC 59.181 60.000 8.46 0.00 39.62 3.20
2469 4726 2.979058 GGGACCTTCGAGTTCCTCT 58.021 57.895 8.46 0.00 31.97 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.