Multiple sequence alignment - TraesCS1D01G063400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G063400 chr1D 100.000 9164 0 0 1 9164 43273665 43282828 0.000000e+00 16923.0
1 TraesCS1D01G063400 chr1A 93.551 3303 148 28 1533 4815 42643888 42647145 0.000000e+00 4859.0
2 TraesCS1D01G063400 chr1A 90.184 2231 139 34 4843 7036 42664894 42667081 0.000000e+00 2833.0
3 TraesCS1D01G063400 chr1A 91.581 1259 88 10 7093 8341 42667078 42668328 0.000000e+00 1722.0
4 TraesCS1D01G063400 chr1A 86.801 894 55 29 532 1393 42643029 42643891 0.000000e+00 939.0
5 TraesCS1D01G063400 chr1A 91.723 592 37 6 7753 8341 42716291 42716873 0.000000e+00 811.0
6 TraesCS1D01G063400 chr1A 85.604 778 82 15 7822 8585 42799864 42800625 0.000000e+00 789.0
7 TraesCS1D01G063400 chr1A 90.556 593 43 4 7753 8341 42681125 42681708 0.000000e+00 773.0
8 TraesCS1D01G063400 chr1A 89.258 512 45 4 8586 9090 42668495 42669003 4.670000e-177 632.0
9 TraesCS1D01G063400 chr1A 88.350 515 47 7 8586 9090 42681875 42682386 2.830000e-169 606.0
10 TraesCS1D01G063400 chr1A 87.767 515 50 7 8586 9090 42717040 42717551 2.850000e-164 590.0
11 TraesCS1D01G063400 chr1A 88.452 407 36 5 8694 9090 42691331 42691736 1.790000e-131 481.0
12 TraesCS1D01G063400 chr1A 95.146 206 5 1 7549 7754 42716009 42716209 4.130000e-83 320.0
13 TraesCS1D01G063400 chr1A 91.981 212 10 3 7549 7760 42680844 42681048 3.240000e-74 291.0
14 TraesCS1D01G063400 chr1A 89.147 129 13 1 491 618 42642302 42642430 9.520000e-35 159.0
15 TraesCS1D01G063400 chr1A 92.754 69 4 1 9092 9159 42682460 42682528 2.110000e-16 99.0
16 TraesCS1D01G063400 chr1A 92.754 69 4 1 9092 9159 42691810 42691878 2.110000e-16 99.0
17 TraesCS1D01G063400 chr1A 95.082 61 2 1 9100 9159 42669085 42669145 2.720000e-15 95.3
18 TraesCS1D01G063400 chr1B 88.589 2077 134 55 383 2403 63187897 63189926 0.000000e+00 2427.0
19 TraesCS1D01G063400 chr1B 85.139 1938 193 55 2497 4390 63189932 63191818 0.000000e+00 1895.0
20 TraesCS1D01G063400 chr1B 85.705 1588 133 45 7053 8586 63191843 63193390 0.000000e+00 1589.0
21 TraesCS1D01G063400 chr1B 89.706 204 16 4 8583 8782 63193487 63193689 1.180000e-63 255.0
22 TraesCS1D01G063400 chr1B 91.729 133 11 0 8772 8904 63196507 63196639 1.570000e-42 185.0
23 TraesCS1D01G063400 chr1B 75.820 244 45 10 5902 6136 679435516 679435754 2.700000e-20 111.0
24 TraesCS1D01G063400 chr1B 75.720 243 48 9 5902 6136 681809509 681809748 2.700000e-20 111.0
25 TraesCS1D01G063400 chr7A 77.971 1262 203 50 3126 4360 133679319 133678106 0.000000e+00 721.0
26 TraesCS1D01G063400 chr7A 80.653 429 65 15 1962 2388 133680467 133680055 5.340000e-82 316.0
27 TraesCS1D01G063400 chr7A 81.567 217 30 7 99 309 97601759 97601971 4.400000e-38 171.0
28 TraesCS1D01G063400 chr7A 79.891 184 24 7 8908 9090 317248451 317248280 1.250000e-23 122.0
29 TraesCS1D01G063400 chr7A 88.060 67 7 1 382 448 156870901 156870966 2.740000e-10 78.7
30 TraesCS1D01G063400 chr7A 94.872 39 2 0 2415 2453 50053746 50053708 2.760000e-05 62.1
31 TraesCS1D01G063400 chr7A 96.875 32 1 0 8133 8164 133669341 133669310 5.000000e-03 54.7
32 TraesCS1D01G063400 chr7D 77.822 1267 208 36 3126 4360 135025377 135024152 0.000000e+00 715.0
33 TraesCS1D01G063400 chr7D 82.659 346 47 10 2031 2374 134488798 134488464 2.500000e-75 294.0
34 TraesCS1D01G063400 chr7D 76.344 372 60 20 95 447 153125759 153126121 3.400000e-39 174.0
35 TraesCS1D01G063400 chr7D 84.211 133 20 1 8945 9076 622195089 622195221 2.690000e-25 128.0
36 TraesCS1D01G063400 chr7D 84.158 101 14 2 6036 6136 617755143 617755241 7.570000e-16 97.1
37 TraesCS1D01G063400 chr7D 87.143 70 8 1 379 448 155262712 155262780 2.740000e-10 78.7
38 TraesCS1D01G063400 chr7B 80.262 917 139 30 3126 4019 96808232 96807335 0.000000e+00 652.0
39 TraesCS1D01G063400 chr7B 80.000 430 68 15 1962 2388 96809354 96808940 1.500000e-77 302.0
40 TraesCS1D01G063400 chr7B 84.615 169 16 4 149 317 605959890 605960048 9.520000e-35 159.0
41 TraesCS1D01G063400 chr7B 79.646 226 36 9 95 317 115200015 115200233 4.430000e-33 154.0
42 TraesCS1D01G063400 chr7B 79.130 230 29 15 90 309 480336969 480336749 3.450000e-29 141.0
43 TraesCS1D01G063400 chr7B 85.149 101 13 2 6036 6136 629415993 629416091 1.630000e-17 102.0
44 TraesCS1D01G063400 chr7B 83.333 78 7 6 374 449 197411643 197411570 5.940000e-07 67.6
45 TraesCS1D01G063400 chr7B 97.059 34 1 0 2411 2444 23530988 23530955 3.570000e-04 58.4
46 TraesCS1D01G063400 chr6B 83.333 186 27 4 8907 9090 136095240 136095423 1.580000e-37 169.0
47 TraesCS1D01G063400 chr3D 80.603 232 33 9 101 326 393649201 393649426 1.580000e-37 169.0
48 TraesCS1D01G063400 chr3D 100.000 31 0 0 3077 3107 332632068 332632098 3.570000e-04 58.4
49 TraesCS1D01G063400 chr5D 82.090 201 27 6 126 322 528226417 528226612 7.360000e-36 163.0
50 TraesCS1D01G063400 chr5D 84.242 165 19 4 8909 9073 124731228 124731385 4.430000e-33 154.0
51 TraesCS1D01G063400 chr5D 80.874 183 33 2 8907 9088 438323620 438323439 9.590000e-30 143.0
52 TraesCS1D01G063400 chr5D 82.955 88 12 3 6380 6466 517711098 517711013 9.870000e-10 76.8
53 TraesCS1D01G063400 chr5D 100.000 28 0 0 5018 5045 309399473 309399500 1.700000e-02 52.8
54 TraesCS1D01G063400 chr2A 81.818 198 31 4 8909 9105 585189310 585189503 2.650000e-35 161.0
55 TraesCS1D01G063400 chr2A 80.625 160 27 3 5421 5577 3756510 3756352 4.490000e-23 121.0
56 TraesCS1D01G063400 chr2A 100.000 30 0 0 4566 4595 93890914 93890943 1.000000e-03 56.5
57 TraesCS1D01G063400 chrUn 81.221 213 27 12 98 308 48585967 48586168 9.520000e-35 159.0
58 TraesCS1D01G063400 chrUn 85.000 60 6 3 9092 9150 20854375 20854432 3.570000e-04 58.4
59 TraesCS1D01G063400 chr5A 82.143 196 23 11 95 286 670508912 670508725 3.430000e-34 158.0
60 TraesCS1D01G063400 chr5A 81.595 163 23 3 8911 9073 138590817 138590972 2.690000e-25 128.0
61 TraesCS1D01G063400 chr5A 83.582 134 21 1 8946 9078 679112661 679112528 3.470000e-24 124.0
62 TraesCS1D01G063400 chr5A 92.500 40 3 0 408 447 115289300 115289339 3.570000e-04 58.4
63 TraesCS1D01G063400 chr6A 79.348 184 25 7 8908 9090 164757888 164757717 5.810000e-22 117.0
64 TraesCS1D01G063400 chr6A 92.157 51 2 2 394 443 468246691 468246740 4.590000e-08 71.3
65 TraesCS1D01G063400 chr6A 100.000 32 0 0 2412 2443 476820754 476820785 9.940000e-05 60.2
66 TraesCS1D01G063400 chr6A 97.059 34 1 0 6349 6382 552293497 552293530 3.570000e-04 58.4
67 TraesCS1D01G063400 chr2D 76.230 244 44 10 5902 6136 144467122 144467360 5.810000e-22 117.0
68 TraesCS1D01G063400 chr2D 86.458 96 11 2 6041 6136 82888749 82888842 4.530000e-18 104.0
69 TraesCS1D01G063400 chr2D 100.000 32 0 0 416 447 423367966 423367935 9.940000e-05 60.2
70 TraesCS1D01G063400 chr2D 92.857 42 2 1 408 448 602691510 602691551 9.940000e-05 60.2
71 TraesCS1D01G063400 chr2D 100.000 28 0 0 9120 9147 592402927 592402900 1.700000e-02 52.8
72 TraesCS1D01G063400 chr3A 87.129 101 11 2 6036 6136 19553083 19552985 7.520000e-21 113.0
73 TraesCS1D01G063400 chr5B 78.689 183 28 6 8909 9090 104247473 104247301 2.700000e-20 111.0
74 TraesCS1D01G063400 chr5B 81.132 106 18 2 6031 6136 584861952 584861849 5.900000e-12 84.2
75 TraesCS1D01G063400 chr3B 77.576 165 19 14 5017 5169 774143458 774143616 5.900000e-12 84.2
76 TraesCS1D01G063400 chr3B 88.889 63 4 3 389 448 505262273 505262211 3.550000e-09 75.0
77 TraesCS1D01G063400 chr3B 76.978 139 23 7 29 159 676283801 676283938 4.590000e-08 71.3
78 TraesCS1D01G063400 chr3B 97.143 35 1 0 9113 9147 103747650 103747616 9.940000e-05 60.2
79 TraesCS1D01G063400 chr2B 82.022 89 13 2 5434 5519 62419708 62419620 1.280000e-08 73.1
80 TraesCS1D01G063400 chr2B 89.362 47 5 0 3062 3108 371164352 371164306 9.940000e-05 60.2
81 TraesCS1D01G063400 chr2B 96.875 32 0 1 9117 9147 718370754 718370723 1.700000e-02 52.8
82 TraesCS1D01G063400 chr2B 96.875 32 0 1 9117 9147 718388830 718388799 1.700000e-02 52.8
83 TraesCS1D01G063400 chr4D 96.970 33 1 0 2423 2455 384220783 384220751 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G063400 chr1D 43273665 43282828 9163 False 16923.000000 16923 100.000000 1 9164 1 chr1D.!!$F1 9163
1 TraesCS1D01G063400 chr1A 42642302 42647145 4843 False 1985.666667 4859 89.833000 491 4815 3 chr1A.!!$F2 4324
2 TraesCS1D01G063400 chr1A 42664894 42669145 4251 False 1320.575000 2833 91.526250 4843 9159 4 chr1A.!!$F3 4316
3 TraesCS1D01G063400 chr1A 42799864 42800625 761 False 789.000000 789 85.604000 7822 8585 1 chr1A.!!$F1 763
4 TraesCS1D01G063400 chr1A 42716009 42717551 1542 False 573.666667 811 91.545333 7549 9090 3 chr1A.!!$F6 1541
5 TraesCS1D01G063400 chr1A 42680844 42682528 1684 False 442.250000 773 90.910250 7549 9159 4 chr1A.!!$F4 1610
6 TraesCS1D01G063400 chr1A 42691331 42691878 547 False 290.000000 481 90.603000 8694 9159 2 chr1A.!!$F5 465
7 TraesCS1D01G063400 chr1B 63187897 63196639 8742 False 1270.200000 2427 88.173600 383 8904 5 chr1B.!!$F3 8521
8 TraesCS1D01G063400 chr7A 133678106 133680467 2361 True 518.500000 721 79.312000 1962 4360 2 chr7A.!!$R4 2398
9 TraesCS1D01G063400 chr7D 135024152 135025377 1225 True 715.000000 715 77.822000 3126 4360 1 chr7D.!!$R2 1234
10 TraesCS1D01G063400 chr7B 96807335 96809354 2019 True 477.000000 652 80.131000 1962 4019 2 chr7B.!!$R4 2057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.036388 TAGGGAAGCCTTGCGTCAAG 60.036 55.000 11.23 11.23 38.70 3.02 F
815 1549 0.452618 CGTCGCATTGCACGATTTGT 60.453 50.000 21.17 0.00 42.26 2.83 F
1355 2101 0.676466 TAGAGGTTTCGTCGGCGGTA 60.676 55.000 10.62 0.00 38.89 4.02 F
1530 2276 1.614413 CACTCGCTACCCCTTCTATCC 59.386 57.143 0.00 0.00 0.00 2.59 F
3424 4336 0.706433 ATGTTCCTTGCCCCTGTGAT 59.294 50.000 0.00 0.00 0.00 3.06 F
4976 5940 0.458669 GTGCCAGCAATCATCCCTTG 59.541 55.000 0.00 0.00 0.00 3.61 F
5653 6635 0.036732 TGGACTTGGATGAGTGGTGC 59.963 55.000 0.00 0.00 0.00 5.01 F
5819 6801 0.104934 ATCCCTAGGCGGAAGTGGAT 60.105 55.000 2.05 0.00 34.93 3.41 F
6638 7622 0.179702 CCTCAGCCTGCAAGCATAGA 59.820 55.000 10.50 3.66 34.23 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 2156 0.251341 AATGCTCCCCAGTTCACACC 60.251 55.000 0.00 0.00 0.00 4.16 R
1647 2393 1.211703 TCTTGGCAATCTCCGGCATTA 59.788 47.619 0.00 0.00 38.88 1.90 R
3306 4218 2.109480 AGTGCTATCATCCAATGGCCAT 59.891 45.455 14.09 14.09 32.58 4.40 R
3452 4364 7.551585 TGAATAACTTCCAAAGCAACAGAAAA 58.448 30.769 0.00 0.00 0.00 2.29 R
5130 6096 0.033796 CCACCTTCACTGGCATCCAT 60.034 55.000 0.00 0.00 30.82 3.41 R
5800 6782 0.104934 ATCCACTTCCGCCTAGGGAT 60.105 55.000 11.72 0.00 41.52 3.85 R
6612 7594 0.106268 TTGCAGGCTGAGGTTTCCAA 60.106 50.000 20.86 8.04 0.00 3.53 R
7123 8123 1.259609 CCCATTGAGCACATGGTGTT 58.740 50.000 0.00 0.00 35.75 3.32 R
8441 9584 0.106819 ATGGAGCAATCACTCAGCCC 60.107 55.000 0.00 0.00 38.50 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.478780 TGTAGGGAAGCCTTGCGT 58.521 55.556 0.00 0.00 0.00 5.24
18 19 1.295423 TGTAGGGAAGCCTTGCGTC 59.705 57.895 0.00 0.00 36.39 5.19
19 20 1.295423 GTAGGGAAGCCTTGCGTCA 59.705 57.895 0.00 0.00 38.70 4.35
20 21 0.321298 GTAGGGAAGCCTTGCGTCAA 60.321 55.000 0.00 0.00 38.70 3.18
21 22 0.036388 TAGGGAAGCCTTGCGTCAAG 60.036 55.000 11.23 11.23 38.70 3.02
28 29 3.777925 CTTGCGTCAAGGCGGTCG 61.778 66.667 10.56 0.00 37.77 4.79
46 47 3.946201 CCAGATGGGCCGGCCTAG 61.946 72.222 42.70 25.97 36.10 3.02
47 48 4.632974 CAGATGGGCCGGCCTAGC 62.633 72.222 42.70 39.90 36.10 3.42
66 67 3.953775 CGTGGGAGGCCACAACCT 61.954 66.667 5.01 0.00 45.04 3.50
67 68 2.520968 GTGGGAGGCCACAACCTT 59.479 61.111 5.01 0.00 41.32 3.50
68 69 1.903404 GTGGGAGGCCACAACCTTG 60.903 63.158 5.01 0.00 41.32 3.61
69 70 2.391130 TGGGAGGCCACAACCTTGT 61.391 57.895 5.01 0.00 41.32 3.16
70 71 1.152546 GGGAGGCCACAACCTTGTT 60.153 57.895 5.01 0.00 41.32 2.83
71 72 0.759060 GGGAGGCCACAACCTTGTTT 60.759 55.000 5.01 0.00 41.32 2.83
72 73 1.119684 GGAGGCCACAACCTTGTTTT 58.880 50.000 5.01 0.00 41.32 2.43
73 74 1.068588 GGAGGCCACAACCTTGTTTTC 59.931 52.381 5.01 0.00 41.32 2.29
74 75 2.031870 GAGGCCACAACCTTGTTTTCT 58.968 47.619 5.01 0.00 41.32 2.52
75 76 2.430694 GAGGCCACAACCTTGTTTTCTT 59.569 45.455 5.01 0.00 41.32 2.52
76 77 2.837591 AGGCCACAACCTTGTTTTCTTT 59.162 40.909 5.01 0.00 39.91 2.52
77 78 3.263170 AGGCCACAACCTTGTTTTCTTTT 59.737 39.130 5.01 0.00 39.91 2.27
78 79 3.621268 GGCCACAACCTTGTTTTCTTTTC 59.379 43.478 0.00 0.00 39.91 2.29
79 80 4.503910 GCCACAACCTTGTTTTCTTTTCT 58.496 39.130 0.00 0.00 39.91 2.52
80 81 4.935205 GCCACAACCTTGTTTTCTTTTCTT 59.065 37.500 0.00 0.00 39.91 2.52
81 82 5.063438 GCCACAACCTTGTTTTCTTTTCTTC 59.937 40.000 0.00 0.00 39.91 2.87
82 83 6.398095 CCACAACCTTGTTTTCTTTTCTTCT 58.602 36.000 0.00 0.00 39.91 2.85
83 84 6.873605 CCACAACCTTGTTTTCTTTTCTTCTT 59.126 34.615 0.00 0.00 39.91 2.52
84 85 7.063426 CCACAACCTTGTTTTCTTTTCTTCTTC 59.937 37.037 0.00 0.00 39.91 2.87
85 86 7.814587 CACAACCTTGTTTTCTTTTCTTCTTCT 59.185 33.333 0.00 0.00 39.91 2.85
86 87 7.814587 ACAACCTTGTTTTCTTTTCTTCTTCTG 59.185 33.333 0.00 0.00 38.47 3.02
87 88 7.703058 ACCTTGTTTTCTTTTCTTCTTCTGA 57.297 32.000 0.00 0.00 0.00 3.27
88 89 8.298729 ACCTTGTTTTCTTTTCTTCTTCTGAT 57.701 30.769 0.00 0.00 0.00 2.90
89 90 8.753133 ACCTTGTTTTCTTTTCTTCTTCTGATT 58.247 29.630 0.00 0.00 0.00 2.57
90 91 9.591792 CCTTGTTTTCTTTTCTTCTTCTGATTT 57.408 29.630 0.00 0.00 0.00 2.17
246 247 9.337396 TGTGTATAGAGAACTTGTTTTTCATGT 57.663 29.630 0.00 0.00 36.24 3.21
526 538 2.592308 GATCCACCACCCTGCTCC 59.408 66.667 0.00 0.00 0.00 4.70
581 1280 4.020617 CTGGGCTTCCTGGTGCGA 62.021 66.667 0.00 0.00 0.00 5.10
582 1281 3.329889 TGGGCTTCCTGGTGCGAT 61.330 61.111 0.00 0.00 0.00 4.58
583 1282 2.825836 GGGCTTCCTGGTGCGATG 60.826 66.667 0.00 0.00 0.00 3.84
584 1283 3.512516 GGCTTCCTGGTGCGATGC 61.513 66.667 0.00 0.00 0.00 3.91
585 1284 3.869272 GCTTCCTGGTGCGATGCG 61.869 66.667 0.00 0.00 0.00 4.73
626 1337 0.828343 CCACCCTCTCCGGTCTATCC 60.828 65.000 0.00 0.00 32.17 2.59
645 1369 1.660917 CCTCTCGATCTAACCGCCC 59.339 63.158 0.00 0.00 0.00 6.13
646 1370 1.283181 CTCTCGATCTAACCGCCCG 59.717 63.158 0.00 0.00 0.00 6.13
647 1371 1.445716 CTCTCGATCTAACCGCCCGT 61.446 60.000 0.00 0.00 0.00 5.28
682 1416 3.430513 GGATTTTACACTCCTCGACTCCC 60.431 52.174 0.00 0.00 0.00 4.30
783 1517 1.153628 CGCTGCGGTAAGTAAGGCT 60.154 57.895 15.40 0.00 0.00 4.58
815 1549 0.452618 CGTCGCATTGCACGATTTGT 60.453 50.000 21.17 0.00 42.26 2.83
877 1615 0.885196 TACCGCCATTTCTTGTTGCC 59.115 50.000 0.00 0.00 0.00 4.52
1112 1850 4.240103 CCGCCTCATCCGATGCCA 62.240 66.667 3.25 0.00 29.63 4.92
1116 1854 1.970114 CCTCATCCGATGCCATGGC 60.970 63.158 30.54 30.54 42.35 4.40
1221 1959 3.519370 AGGTACCCCCTTCCATTCTTA 57.481 47.619 8.74 0.00 42.73 2.10
1235 1973 3.184541 CATTCTTATGTGCCTTGCAAGC 58.815 45.455 21.43 16.17 41.47 4.01
1256 1994 0.804989 GTGATTCCTTGGAACCTGCG 59.195 55.000 4.00 0.00 0.00 5.18
1300 2038 2.982130 CGGCAGGCAGTAGAGGTT 59.018 61.111 0.00 0.00 0.00 3.50
1355 2101 0.676466 TAGAGGTTTCGTCGGCGGTA 60.676 55.000 10.62 0.00 38.89 4.02
1371 2117 1.828453 CGGTAAGGGGAATCGGGGATA 60.828 57.143 0.00 0.00 0.00 2.59
1410 2156 3.494749 GGGATGAGATTGAAGAGCAGGAG 60.495 52.174 0.00 0.00 0.00 3.69
1411 2157 3.494749 GGATGAGATTGAAGAGCAGGAGG 60.495 52.174 0.00 0.00 0.00 4.30
1444 2190 4.500375 GGGAGCATTTTCATTCAGCATACC 60.500 45.833 0.00 0.00 0.00 2.73
1514 2260 2.577593 GTGGGCCCTACGACACTC 59.422 66.667 25.70 0.00 0.00 3.51
1517 2263 3.450115 GGCCCTACGACACTCGCT 61.450 66.667 0.00 0.00 45.12 4.93
1522 2268 1.722636 CCTACGACACTCGCTACCCC 61.723 65.000 0.00 0.00 45.12 4.95
1530 2276 1.614413 CACTCGCTACCCCTTCTATCC 59.386 57.143 0.00 0.00 0.00 2.59
1690 2436 6.989169 AGATTACTGGCTTCTACTTGCTATTG 59.011 38.462 0.00 0.00 0.00 1.90
1764 2516 9.229784 CATGAAAATAACATAGTGCATGAGAAC 57.770 33.333 0.00 0.00 38.10 3.01
1803 2557 4.341235 TCACCAACTATTAGGATGAGACGG 59.659 45.833 0.00 0.00 0.00 4.79
1831 2587 2.096019 GCTTTTTGTTCTGAGAGAGCGG 60.096 50.000 0.00 0.00 0.00 5.52
1840 2596 3.621558 TCTGAGAGAGCGGAGATTGTTA 58.378 45.455 0.00 0.00 0.00 2.41
1893 2649 2.309755 TGGGCATTCACTGAAGGAGATT 59.690 45.455 7.62 0.00 0.00 2.40
1897 2653 3.427233 GCATTCACTGAAGGAGATTGTGC 60.427 47.826 7.62 1.34 0.00 4.57
1898 2654 3.777106 TTCACTGAAGGAGATTGTGCT 57.223 42.857 0.00 0.00 0.00 4.40
1910 2666 4.213694 GGAGATTGTGCTCATGCTTATCAG 59.786 45.833 0.00 0.00 40.48 2.90
1915 2671 3.072944 GTGCTCATGCTTATCAGGGATC 58.927 50.000 0.00 0.00 40.48 3.36
2020 2794 5.586155 TTGGTTCAGTAATTGTTCCCCTA 57.414 39.130 0.00 0.00 0.00 3.53
2049 2824 4.631813 GGTAAAGCCTGTACTTGATGAGTG 59.368 45.833 0.00 0.00 39.48 3.51
2051 2826 3.601443 AGCCTGTACTTGATGAGTGTC 57.399 47.619 0.00 0.00 39.48 3.67
2054 2830 3.589988 CCTGTACTTGATGAGTGTCACC 58.410 50.000 0.00 0.00 39.48 4.02
2060 2836 4.137543 ACTTGATGAGTGTCACCCTTTTC 58.862 43.478 0.00 0.00 37.17 2.29
2374 3154 3.181455 ACCAACTGTCTATTGCACTGTCA 60.181 43.478 0.00 0.00 0.00 3.58
2375 3155 4.005650 CCAACTGTCTATTGCACTGTCAT 58.994 43.478 0.00 0.00 0.00 3.06
2410 3195 7.443259 TTTTCATGCCTGTTACTAACTTACC 57.557 36.000 0.71 0.00 0.00 2.85
2411 3196 5.748670 TCATGCCTGTTACTAACTTACCA 57.251 39.130 0.71 0.00 0.00 3.25
2570 3358 6.573664 TGTTGGTTAGGATTGACATCAAAG 57.426 37.500 0.00 0.00 39.55 2.77
2861 3724 4.282957 TCATGTAAATTGGGCTTCTTGCAA 59.717 37.500 0.00 0.00 45.15 4.08
2864 3727 2.531522 AATTGGGCTTCTTGCAACAC 57.468 45.000 0.00 0.00 45.15 3.32
2890 3775 9.629878 CTAGATGTTTTTCTCTCCTACTAGGTA 57.370 37.037 1.83 0.00 36.53 3.08
2913 3802 9.056005 GGTATAATATCACTTTCTGATGCACAA 57.944 33.333 0.00 0.00 40.12 3.33
2977 3870 5.085920 TCCATTTGACCTGAAACATGGAAT 58.914 37.500 0.00 0.00 34.42 3.01
3075 3971 3.632604 TCTTATCAACTACTCCCTCTGCG 59.367 47.826 0.00 0.00 0.00 5.18
3306 4218 8.815565 TGCTTTCCATGTTTAATCAGGTATTA 57.184 30.769 0.00 0.00 0.00 0.98
3424 4336 0.706433 ATGTTCCTTGCCCCTGTGAT 59.294 50.000 0.00 0.00 0.00 3.06
3452 4364 6.486657 TCGAAAGTGAGAAAGAAATGACCATT 59.513 34.615 0.00 0.00 0.00 3.16
3487 4399 9.860898 GCTTTGGAAGTTATTCAGTTGATATTT 57.139 29.630 0.00 0.00 37.15 1.40
3674 4587 8.880991 ACTATGGACTCTTAAAGTTAGTGAGA 57.119 34.615 0.00 0.00 38.74 3.27
3692 4605 4.767928 GTGAGACTCTCTTTGGTCCTCTAA 59.232 45.833 7.58 0.00 33.39 2.10
3701 4616 6.844388 TCTCTTTGGTCCTCTAATTATAGCCA 59.156 38.462 0.00 0.00 0.00 4.75
3775 4690 3.815401 GCAGCGATGGTATTTTCCAGTAT 59.185 43.478 1.46 0.00 41.05 2.12
3781 4696 5.411669 CGATGGTATTTTCCAGTATTAGGGC 59.588 44.000 0.00 0.00 41.05 5.19
3782 4697 4.710324 TGGTATTTTCCAGTATTAGGGCG 58.290 43.478 0.00 0.00 33.19 6.13
3805 4721 4.202567 GGAATCTATCCTTGGCCCATAACA 60.203 45.833 0.00 0.00 45.56 2.41
3863 4788 7.602644 AGCTGACTTCGTTGTTCTTTGATATAA 59.397 33.333 0.00 0.00 0.00 0.98
3876 4801 9.508567 GTTCTTTGATATAAAAATGCAGGTCTC 57.491 33.333 0.00 0.00 0.00 3.36
3899 4826 4.854291 CGAATGTGTCTAGAGTGAACTCAC 59.146 45.833 12.76 0.82 45.21 3.51
4201 5138 2.234661 CTCAGGTGCTCCATTCAGTACA 59.765 50.000 7.70 0.00 35.89 2.90
4207 5144 4.437390 GGTGCTCCATTCAGTACATTTTCG 60.437 45.833 0.00 0.00 30.98 3.46
4291 5228 5.202640 CCTTTGTTGCTGTCTTTAACGTAC 58.797 41.667 0.00 0.00 0.00 3.67
4318 5279 2.551270 TGTGTAAGGGAGCTCTGGAAT 58.449 47.619 14.64 0.00 0.00 3.01
4367 5330 4.630644 ATTCTGTGACACCTTCTGACAT 57.369 40.909 2.45 0.00 0.00 3.06
4415 5379 1.619654 TTTGGCCAACTGTCAGATGG 58.380 50.000 20.35 21.77 40.72 3.51
4489 5453 1.180029 ATCAACCCATGCAGCTGTTC 58.820 50.000 16.64 0.00 0.00 3.18
4513 5477 7.255569 TCGGGCTAGATATTTTATATGACACG 58.744 38.462 0.00 0.00 0.00 4.49
4533 5497 7.095940 TGACACGTAAATAAAAGAAAGGTCGAG 60.096 37.037 0.00 0.00 0.00 4.04
4552 5516 9.778741 AGGTCGAGCAATATATTTCTTTAATGA 57.221 29.630 18.15 0.00 0.00 2.57
4621 5585 4.572985 TTGTGCAATGGAAACTTCAGAG 57.427 40.909 0.00 0.00 0.00 3.35
4646 5610 8.316214 AGTGCAACAGGAATATGATGAAAAATT 58.684 29.630 0.00 0.00 41.43 1.82
4652 5616 8.260114 ACAGGAATATGATGAAAAATTGAACCC 58.740 33.333 0.00 0.00 0.00 4.11
4655 5619 7.435192 GGAATATGATGAAAAATTGAACCCGTC 59.565 37.037 0.00 0.00 0.00 4.79
4668 5632 3.006110 TGAACCCGTCAGAAATAGTCGTT 59.994 43.478 0.00 0.00 0.00 3.85
4690 5654 8.500773 TCGTTTAAGTCAACTTTATTTAGGCAG 58.499 33.333 0.00 0.00 37.40 4.85
4692 5656 9.608617 GTTTAAGTCAACTTTATTTAGGCAGAC 57.391 33.333 0.00 0.00 37.40 3.51
4707 5671 4.701765 AGGCAGACAATGTACATGATCTC 58.298 43.478 9.63 9.05 0.00 2.75
4793 5757 7.461749 CCTATTGGAACCCAGATACACATTAT 58.538 38.462 0.00 0.00 33.81 1.28
4818 5782 9.632638 ATTCTACTAATCCTTGCATTGTTACAT 57.367 29.630 0.00 0.00 0.00 2.29
4819 5783 8.662781 TCTACTAATCCTTGCATTGTTACATC 57.337 34.615 0.00 0.00 0.00 3.06
4820 5784 8.264347 TCTACTAATCCTTGCATTGTTACATCA 58.736 33.333 0.00 0.00 0.00 3.07
4821 5785 7.886629 ACTAATCCTTGCATTGTTACATCAT 57.113 32.000 0.00 0.00 0.00 2.45
4822 5786 8.978874 ACTAATCCTTGCATTGTTACATCATA 57.021 30.769 0.00 0.00 0.00 2.15
4823 5787 9.407380 ACTAATCCTTGCATTGTTACATCATAA 57.593 29.630 0.00 0.00 0.00 1.90
4874 5838 4.944962 TTAGTTGCATGATTCGTTGGAG 57.055 40.909 0.00 0.00 0.00 3.86
4895 5859 2.817258 GCACCAACAGCCACACTAATTA 59.183 45.455 0.00 0.00 0.00 1.40
4933 5897 4.354155 TGGCGTTTCCACTCTTCG 57.646 55.556 0.00 0.00 40.72 3.79
4944 5908 3.948851 TCCACTCTTCGTTCGAATATCG 58.051 45.455 0.00 0.00 42.10 2.92
4960 5924 6.800408 TCGAATATCGCAACTTACTATAGTGC 59.200 38.462 15.90 8.76 40.21 4.40
4962 5926 4.665833 ATCGCAACTTACTATAGTGCCA 57.334 40.909 15.90 0.00 0.00 4.92
4963 5927 4.041740 TCGCAACTTACTATAGTGCCAG 57.958 45.455 15.90 10.62 0.00 4.85
4976 5940 0.458669 GTGCCAGCAATCATCCCTTG 59.541 55.000 0.00 0.00 0.00 3.61
4985 5949 3.385755 GCAATCATCCCTTGGCATTAACT 59.614 43.478 0.00 0.00 0.00 2.24
4986 5950 4.141869 GCAATCATCCCTTGGCATTAACTT 60.142 41.667 0.00 0.00 0.00 2.66
5011 5977 3.961480 TGGGTGAGAGTGTAGAATGTG 57.039 47.619 0.00 0.00 0.00 3.21
5067 6033 1.602771 GGTGACTAGGGTTCCCAGC 59.397 63.158 10.73 0.00 0.00 4.85
5072 6038 2.606519 TAGGGTTCCCAGCGCTGT 60.607 61.111 33.75 17.33 0.00 4.40
5073 6039 2.579684 CTAGGGTTCCCAGCGCTGTC 62.580 65.000 33.75 20.36 0.00 3.51
5095 6061 0.472044 GCCCTTCTTCCATCTCCCTC 59.528 60.000 0.00 0.00 0.00 4.30
5116 6082 4.459089 GCCACCAGAGGAGGACGC 62.459 72.222 3.57 0.00 35.40 5.19
5117 6083 2.681778 CCACCAGAGGAGGACGCT 60.682 66.667 0.00 0.00 35.40 5.07
5156 6122 4.379243 AGTGAAGGTGGCGGCGAG 62.379 66.667 12.98 0.00 0.00 5.03
5177 6143 1.217882 CTCGTGTTGCTCCGTTTCTT 58.782 50.000 0.00 0.00 0.00 2.52
5178 6144 0.934496 TCGTGTTGCTCCGTTTCTTG 59.066 50.000 0.00 0.00 0.00 3.02
5228 6195 4.873129 CGGATGGCGAGACGGTGG 62.873 72.222 0.00 0.00 0.00 4.61
5240 6207 2.319890 GACGGTGGTGTCTTGGTGGT 62.320 60.000 0.00 0.00 35.95 4.16
5248 6215 2.925706 TCTTGGTGGTAGGCGGCA 60.926 61.111 13.08 0.00 0.00 5.69
5283 6250 3.036429 GCTGGATCCCTTGGTCGCT 62.036 63.158 9.90 0.00 0.00 4.93
5300 6267 3.901797 CTTTGGGCGGCGAGGAGTT 62.902 63.158 12.98 0.00 0.00 3.01
5339 6306 0.799393 GCAAGTCCTTCTTCGGCTTC 59.201 55.000 0.00 0.00 33.63 3.86
5365 6332 2.187163 GAGCTGAAGGTACGGCCC 59.813 66.667 0.00 0.00 42.44 5.80
5380 6347 3.400054 CCCCCTCCTCGTCAACCC 61.400 72.222 0.00 0.00 0.00 4.11
5417 6384 0.958876 GGTTGCCGGTACCCTCTTTG 60.959 60.000 14.85 0.00 0.00 2.77
5418 6385 0.958876 GTTGCCGGTACCCTCTTTGG 60.959 60.000 6.25 1.17 0.00 3.28
5419 6386 2.437895 GCCGGTACCCTCTTTGGC 60.438 66.667 6.25 8.47 35.04 4.52
5420 6387 2.125269 CCGGTACCCTCTTTGGCG 60.125 66.667 6.25 0.00 0.00 5.69
5421 6388 2.652095 CCGGTACCCTCTTTGGCGA 61.652 63.158 6.25 0.00 0.00 5.54
5436 6403 1.301401 GCGAGGTGTAGGTGTTGCA 60.301 57.895 0.00 0.00 0.00 4.08
5448 6415 2.075566 TGTTGCAGGTCTGGGTCCA 61.076 57.895 0.00 0.00 0.00 4.02
5472 6439 3.513750 AACCCTTGGCTGGCTGGTC 62.514 63.158 2.00 0.00 0.00 4.02
5536 6506 4.436998 CGCGGCCGAGGACTCTTT 62.437 66.667 33.48 0.00 36.29 2.52
5548 6518 0.615850 GACTCTTTCTCCCACCCCTG 59.384 60.000 0.00 0.00 0.00 4.45
5588 6558 3.543665 AGCTCAAAATCTGCTCTGGATC 58.456 45.455 0.00 0.00 30.41 3.36
5589 6559 2.287373 GCTCAAAATCTGCTCTGGATCG 59.713 50.000 0.00 0.00 0.00 3.69
5590 6560 3.790091 CTCAAAATCTGCTCTGGATCGA 58.210 45.455 0.00 0.00 0.00 3.59
5591 6561 4.378774 CTCAAAATCTGCTCTGGATCGAT 58.621 43.478 0.00 0.00 0.00 3.59
5592 6562 4.124970 TCAAAATCTGCTCTGGATCGATG 58.875 43.478 0.54 0.00 0.00 3.84
5593 6563 3.834489 AAATCTGCTCTGGATCGATGT 57.166 42.857 0.54 0.00 0.00 3.06
5595 6565 1.478631 TCTGCTCTGGATCGATGTGT 58.521 50.000 0.54 0.00 0.00 3.72
5597 6567 0.897621 TGCTCTGGATCGATGTGTGT 59.102 50.000 0.54 0.00 0.00 3.72
5598 6568 1.284657 GCTCTGGATCGATGTGTGTG 58.715 55.000 0.54 0.00 0.00 3.82
5599 6569 1.284657 CTCTGGATCGATGTGTGTGC 58.715 55.000 0.54 0.00 0.00 4.57
5600 6570 0.108186 TCTGGATCGATGTGTGTGCC 60.108 55.000 0.54 0.00 0.00 5.01
5601 6571 1.423721 CTGGATCGATGTGTGTGCCG 61.424 60.000 0.54 0.00 0.00 5.69
5602 6572 1.447838 GGATCGATGTGTGTGCCGT 60.448 57.895 0.54 0.00 0.00 5.68
5603 6573 1.695893 GGATCGATGTGTGTGCCGTG 61.696 60.000 0.54 0.00 0.00 4.94
5617 6599 0.250513 GCCGTGTTCTCCTTGGAGAT 59.749 55.000 18.81 0.00 0.00 2.75
5621 6603 0.250234 TGTTCTCCTTGGAGATGCCG 59.750 55.000 18.81 0.00 40.66 5.69
5625 6607 1.306141 TCCTTGGAGATGCCGTCCT 60.306 57.895 0.00 0.00 40.66 3.85
5653 6635 0.036732 TGGACTTGGATGAGTGGTGC 59.963 55.000 0.00 0.00 0.00 5.01
5670 6652 1.893808 GCTGTGGTGTGGAGGTGTG 60.894 63.158 0.00 0.00 0.00 3.82
5749 6731 0.110486 TCCCTTTGTTGGTGCTCTCC 59.890 55.000 0.00 0.00 0.00 3.71
5751 6733 0.535102 CCTTTGTTGGTGCTCTCCGT 60.535 55.000 0.00 0.00 0.00 4.69
5769 6751 3.583276 TTCCGGTGTGCGCTGGTAG 62.583 63.158 9.73 0.00 36.33 3.18
5784 6766 3.071023 GCTGGTAGCCTGGTATGTTCATA 59.929 47.826 0.00 0.00 34.48 2.15
5800 6782 2.957474 TCATATGGGTCGACATCCTCA 58.043 47.619 18.91 7.49 32.39 3.86
5809 6791 0.605589 CGACATCCTCATCCCTAGGC 59.394 60.000 2.05 0.00 33.84 3.93
5813 6795 0.191064 ATCCTCATCCCTAGGCGGAA 59.809 55.000 2.05 0.00 34.93 4.30
5814 6796 0.470080 TCCTCATCCCTAGGCGGAAG 60.470 60.000 2.05 0.00 34.93 3.46
5817 6799 1.048724 TCATCCCTAGGCGGAAGTGG 61.049 60.000 2.05 0.00 34.93 4.00
5818 6800 1.048724 CATCCCTAGGCGGAAGTGGA 61.049 60.000 2.05 0.00 34.93 4.02
5819 6801 0.104934 ATCCCTAGGCGGAAGTGGAT 60.105 55.000 2.05 0.00 34.93 3.41
5824 6806 0.907704 TAGGCGGAAGTGGATGTGGT 60.908 55.000 0.00 0.00 0.00 4.16
5830 6812 2.674177 CGGAAGTGGATGTGGTAGTGTC 60.674 54.545 0.00 0.00 0.00 3.67
5892 6874 4.810491 GCTGACCATGTTTTCAATGTGTTT 59.190 37.500 0.00 0.00 0.00 2.83
5900 6882 5.724328 TGTTTTCAATGTGTTTGTTGCCTA 58.276 33.333 0.00 0.00 36.65 3.93
5902 6884 4.582701 TTCAATGTGTTTGTTGCCTAGG 57.417 40.909 3.67 3.67 36.65 3.02
5903 6885 2.295909 TCAATGTGTTTGTTGCCTAGGC 59.704 45.455 27.71 27.71 37.85 3.93
5904 6886 2.292828 ATGTGTTTGTTGCCTAGGCT 57.707 45.000 33.07 7.18 42.51 4.58
5905 6887 2.065899 TGTGTTTGTTGCCTAGGCTT 57.934 45.000 33.07 0.00 42.51 4.35
5906 6888 1.680735 TGTGTTTGTTGCCTAGGCTTG 59.319 47.619 33.07 0.00 42.51 4.01
5907 6889 1.000274 GTGTTTGTTGCCTAGGCTTGG 60.000 52.381 33.07 10.87 42.51 3.61
5920 6902 3.365265 CTTGGCCCGGTGCTGTTC 61.365 66.667 13.58 0.00 40.92 3.18
5921 6903 3.850098 CTTGGCCCGGTGCTGTTCT 62.850 63.158 13.58 0.00 40.92 3.01
5922 6904 3.429372 TTGGCCCGGTGCTGTTCTT 62.429 57.895 13.58 0.00 40.92 2.52
5923 6905 2.597510 GGCCCGGTGCTGTTCTTT 60.598 61.111 13.58 0.00 40.92 2.52
5924 6906 2.626780 GGCCCGGTGCTGTTCTTTC 61.627 63.158 13.58 0.00 40.92 2.62
5925 6907 2.966309 GCCCGGTGCTGTTCTTTCG 61.966 63.158 0.00 0.00 36.87 3.46
5926 6908 1.597027 CCCGGTGCTGTTCTTTCGT 60.597 57.895 0.00 0.00 0.00 3.85
5927 6909 1.566018 CCCGGTGCTGTTCTTTCGTC 61.566 60.000 0.00 0.00 0.00 4.20
5936 6918 4.335315 TGCTGTTCTTTCGTCTTTGATTGT 59.665 37.500 0.00 0.00 0.00 2.71
5969 6951 0.961753 CCCTCCTTGCTTGTGTTTCC 59.038 55.000 0.00 0.00 0.00 3.13
5979 6961 0.953471 TTGTGTTTCCGAGGATGGCG 60.953 55.000 0.00 0.00 0.00 5.69
6032 7014 3.825328 AGCCATTTGTTGTGAAGTCTCT 58.175 40.909 0.00 0.00 0.00 3.10
6048 7030 0.946221 CTCTGTGTGGTCGTGAAGCC 60.946 60.000 0.00 0.00 0.00 4.35
6050 7032 2.028484 GTGTGGTCGTGAAGCCGA 59.972 61.111 0.00 0.00 33.79 5.54
6057 7039 2.951269 TCGTGAAGCCGACTCCTTA 58.049 52.632 0.00 0.00 30.63 2.69
6088 7070 1.375268 GTGAGCGCCTCTTCTTGCT 60.375 57.895 2.29 0.00 41.11 3.91
6092 7074 2.734673 GCGCCTCTTCTTGCTGACG 61.735 63.158 0.00 0.00 0.00 4.35
6097 7079 0.601046 CTCTTCTTGCTGACGGTGCA 60.601 55.000 0.00 0.00 38.80 4.57
6099 7081 0.882042 CTTCTTGCTGACGGTGCAGT 60.882 55.000 0.00 0.00 41.71 4.40
6127 7109 2.128507 GCCAGGACGAGAGGGTAGG 61.129 68.421 0.00 0.00 0.00 3.18
6129 7111 1.455959 CAGGACGAGAGGGTAGGGG 60.456 68.421 0.00 0.00 0.00 4.79
6148 7130 2.581354 CCTCTCTTCCCGTGGCTG 59.419 66.667 0.00 0.00 0.00 4.85
6183 7165 2.567169 TGCTGCCTCTTCTGCTTAGTTA 59.433 45.455 0.00 0.00 32.95 2.24
6207 7189 0.474184 AGGTTCTTCAGTGTGGTGGG 59.526 55.000 0.00 0.00 0.00 4.61
6212 7194 2.963928 CTTCAGTGTGGTGGGCAGCA 62.964 60.000 0.00 0.00 36.34 4.41
6304 7286 1.019805 GCTCCTTGTACCGTTCTGCC 61.020 60.000 0.00 0.00 0.00 4.85
6312 7294 1.070376 GTACCGTTCTGCCGTTGTTTC 60.070 52.381 0.00 0.00 0.00 2.78
6315 7297 1.662876 CCGTTCTGCCGTTGTTTCATG 60.663 52.381 0.00 0.00 0.00 3.07
6321 7303 1.066303 TGCCGTTGTTTCATGTTGGTC 59.934 47.619 0.00 0.00 0.00 4.02
6340 7322 0.331278 CTTGTGTAATCCCTGGCCCA 59.669 55.000 0.00 0.00 0.00 5.36
6419 7401 2.480419 CAGCAGGAAGTTTGGTCTAACG 59.520 50.000 0.00 0.00 33.26 3.18
6434 7416 4.441217 GGTCTAACGGACAATTAGGGAGAC 60.441 50.000 0.00 0.00 46.16 3.36
6475 7457 4.854436 AGGGTAATCATGCAGGGATATTCT 59.146 41.667 0.00 0.00 0.00 2.40
6476 7458 5.045286 AGGGTAATCATGCAGGGATATTCTC 60.045 44.000 0.00 0.00 0.00 2.87
6551 7533 3.445987 AGAAACCCTCCCACAAACAAAA 58.554 40.909 0.00 0.00 0.00 2.44
6561 7543 3.865164 CCCACAAACAAAAGCTTGACTTC 59.135 43.478 0.00 0.00 37.75 3.01
6594 7576 3.155998 CGAAGTGTGTCGAATTCATTGC 58.844 45.455 6.22 0.00 43.86 3.56
6622 7604 2.261729 AGGAGACTCCTTGGAAACCTC 58.738 52.381 18.94 0.00 46.91 3.85
6632 7616 0.538057 TGGAAACCTCAGCCTGCAAG 60.538 55.000 0.00 0.00 0.00 4.01
6638 7622 0.179702 CCTCAGCCTGCAAGCATAGA 59.820 55.000 10.50 3.66 34.23 1.98
6689 7673 5.540337 TGTAGTAGAGGGCTCATTTATCCAG 59.460 44.000 0.00 0.00 0.00 3.86
6690 7674 2.947127 AGAGGGCTCATTTATCCAGC 57.053 50.000 0.00 0.00 0.00 4.85
6691 7675 2.130193 AGAGGGCTCATTTATCCAGCA 58.870 47.619 0.00 0.00 34.62 4.41
6709 7693 5.644206 TCCAGCACGTAAGCATTTATTTACA 59.356 36.000 0.36 0.00 45.62 2.41
6738 7731 5.791336 TCATGTCACTGTTACTGAAGACT 57.209 39.130 15.28 0.00 0.00 3.24
6739 7732 5.532557 TCATGTCACTGTTACTGAAGACTG 58.467 41.667 15.28 12.20 0.00 3.51
6787 7780 3.176708 GCATGAATGATGTGCTGTTGAC 58.823 45.455 0.00 0.00 36.02 3.18
6887 7887 5.241506 ACCATTGATATAAACATGCTTCCCG 59.758 40.000 0.00 0.00 0.00 5.14
6888 7888 4.829064 TTGATATAAACATGCTTCCCGC 57.171 40.909 0.00 0.00 39.77 6.13
6901 7901 1.804748 CTTCCCGCTTGACTGGTAAAC 59.195 52.381 0.00 0.00 0.00 2.01
6902 7902 0.759959 TCCCGCTTGACTGGTAAACA 59.240 50.000 0.00 0.00 0.00 2.83
6975 7975 3.754323 AGACGTGAAGAGAAGAGGTACAG 59.246 47.826 0.00 0.00 0.00 2.74
6977 7977 4.649692 ACGTGAAGAGAAGAGGTACAGTA 58.350 43.478 0.00 0.00 0.00 2.74
7005 8005 1.135402 CCCACAACCGATTTTAGCAGC 60.135 52.381 0.00 0.00 0.00 5.25
7063 8063 3.181474 GCCTATATATTCTGAGCCCGACC 60.181 52.174 0.00 0.00 0.00 4.79
7064 8064 4.023980 CCTATATATTCTGAGCCCGACCA 58.976 47.826 0.00 0.00 0.00 4.02
7068 8068 2.622064 ATTCTGAGCCCGACCAATAC 57.378 50.000 0.00 0.00 0.00 1.89
7074 8074 3.426615 TGAGCCCGACCAATACAATTTT 58.573 40.909 0.00 0.00 0.00 1.82
7123 8123 1.887854 CAGGAATGGTGTTGCATGTCA 59.112 47.619 0.00 0.00 0.00 3.58
7134 8135 0.314618 TGCATGTCAACACCATGTGC 59.685 50.000 0.00 0.00 41.38 4.57
7135 8136 0.599558 GCATGTCAACACCATGTGCT 59.400 50.000 0.00 0.00 41.38 4.40
7138 8139 2.049888 TGTCAACACCATGTGCTCAA 57.950 45.000 0.00 0.00 36.98 3.02
7158 8159 3.525800 ATGGGCACAGGAAAACTAAGT 57.474 42.857 0.00 0.00 0.00 2.24
7218 8231 6.767524 ACAAAGGTCAAGAACACAACATTA 57.232 33.333 0.00 0.00 0.00 1.90
7225 8238 9.003658 AGGTCAAGAACACAACATTAGAATTAG 57.996 33.333 0.00 0.00 0.00 1.73
7351 8365 2.289002 CCTCACAAACAGCAGAGTTCAC 59.711 50.000 0.00 0.00 0.00 3.18
7354 8368 3.947196 TCACAAACAGCAGAGTTCACATT 59.053 39.130 0.00 0.00 0.00 2.71
7356 8370 3.316308 ACAAACAGCAGAGTTCACATTCC 59.684 43.478 0.00 0.00 0.00 3.01
7357 8371 2.936919 ACAGCAGAGTTCACATTCCA 57.063 45.000 0.00 0.00 0.00 3.53
7358 8372 3.430042 ACAGCAGAGTTCACATTCCAT 57.570 42.857 0.00 0.00 0.00 3.41
7360 8374 4.511527 ACAGCAGAGTTCACATTCCATAG 58.488 43.478 0.00 0.00 0.00 2.23
7372 8389 8.348507 GTTCACATTCCATAGATTTCTTGATCC 58.651 37.037 0.00 0.00 0.00 3.36
7398 8415 8.230486 CGACATTAGGGATAAAGCATATTTGTC 58.770 37.037 0.00 0.00 0.00 3.18
7467 8484 6.154363 TGAATTTGGGGATTGATGGTTACTTC 59.846 38.462 0.00 0.00 0.00 3.01
7469 8486 3.197983 TGGGGATTGATGGTTACTTCCT 58.802 45.455 0.00 0.00 0.00 3.36
7524 8542 2.168496 CAAACAGTCTCGAGGAGGGTA 58.832 52.381 13.56 0.00 0.00 3.69
7689 8710 2.694109 GCTTGAAGGTAGACCGGATAGT 59.306 50.000 9.46 0.00 42.08 2.12
7797 8932 6.622896 GCCTTATTACTGTGTTGCAACTTAGG 60.623 42.308 28.61 18.94 0.00 2.69
8019 9154 5.500645 ACAGTTTGCTTACCTTGTTCTTC 57.499 39.130 0.00 0.00 0.00 2.87
8025 9160 5.298989 TGCTTACCTTGTTCTTCCAGTTA 57.701 39.130 0.00 0.00 0.00 2.24
8052 9187 7.365840 TCATTGTTGTTGTATATGTTGCGTA 57.634 32.000 0.00 0.00 0.00 4.42
8086 9221 2.269241 GCCCAGCACCAGTAGGAC 59.731 66.667 0.00 0.00 38.69 3.85
8109 9244 5.068234 TGAAAGTATGGAAGACTGTACCG 57.932 43.478 0.00 0.00 0.00 4.02
8239 9374 2.821378 TCTGCCCACTGAAACATCATTG 59.179 45.455 0.00 0.00 0.00 2.82
8248 9383 4.232221 CTGAAACATCATTGTTCCTGTGC 58.768 43.478 0.00 0.00 45.30 4.57
8253 9388 0.310543 TCATTGTTCCTGTGCGTTGC 59.689 50.000 0.00 0.00 0.00 4.17
8278 9416 5.200483 TCTCTCTTGGTGGAAACATTGTTT 58.800 37.500 14.42 14.42 46.14 2.83
8296 9436 2.490903 GTTTGTCTGAGCTGCCATTCAT 59.509 45.455 0.00 0.00 0.00 2.57
8313 9453 5.337554 CATTCATTGGCTGTCACTACATTG 58.662 41.667 0.00 0.00 34.37 2.82
8346 9486 4.333649 TCTTCAGAGTTTGTTTGCTCACAG 59.666 41.667 0.00 0.00 34.39 3.66
8361 9504 2.210116 TCACAGCAGTTCTTTTCGGAC 58.790 47.619 0.00 0.00 0.00 4.79
8372 9515 4.713824 TCTTTTCGGACACATATCTCGT 57.286 40.909 0.00 0.00 0.00 4.18
8415 9558 2.292845 GGCTTCAGAGAAGCATATTGGC 59.707 50.000 27.01 9.34 44.71 4.52
8435 9578 1.225376 CGAAAGCCCTGTACGTGCAA 61.225 55.000 7.96 0.00 0.00 4.08
8440 9583 2.785562 AGCCCTGTACGTGCAATTTTA 58.214 42.857 7.96 0.00 0.00 1.52
8441 9584 2.747446 AGCCCTGTACGTGCAATTTTAG 59.253 45.455 7.96 0.00 0.00 1.85
8444 9587 2.159435 CCTGTACGTGCAATTTTAGGGC 60.159 50.000 7.96 0.00 0.00 5.19
8445 9588 2.747446 CTGTACGTGCAATTTTAGGGCT 59.253 45.455 7.96 0.00 0.00 5.19
8474 9617 6.818644 TGATTGCTCCATCTAGTTTGTTCTAC 59.181 38.462 0.00 0.00 0.00 2.59
8475 9618 6.360370 TTGCTCCATCTAGTTTGTTCTACT 57.640 37.500 0.00 0.00 0.00 2.57
8476 9619 6.360370 TGCTCCATCTAGTTTGTTCTACTT 57.640 37.500 0.00 0.00 0.00 2.24
8477 9620 6.398918 TGCTCCATCTAGTTTGTTCTACTTC 58.601 40.000 0.00 0.00 0.00 3.01
8478 9621 6.211584 TGCTCCATCTAGTTTGTTCTACTTCT 59.788 38.462 0.00 0.00 0.00 2.85
8479 9622 7.396339 TGCTCCATCTAGTTTGTTCTACTTCTA 59.604 37.037 0.00 0.00 0.00 2.10
8554 9711 5.249393 TCAGGGAAAGCAGAGTCTTAATCTT 59.751 40.000 0.00 0.00 0.00 2.40
8707 9969 2.121291 TGTCACAAGCACTTTCACCA 57.879 45.000 0.00 0.00 0.00 4.17
8811 12904 2.487428 CTCGTCAGTCAGAGGCCG 59.513 66.667 0.00 0.00 32.24 6.13
8912 13011 7.355778 GCAACATGCATTCCTATAAACTACTC 58.644 38.462 0.00 0.00 44.26 2.59
8921 13020 5.625150 TCCTATAAACTACTCCCTCCGTAC 58.375 45.833 0.00 0.00 0.00 3.67
8923 13022 1.857965 AAACTACTCCCTCCGTACCC 58.142 55.000 0.00 0.00 0.00 3.69
8924 13023 0.394899 AACTACTCCCTCCGTACCCG 60.395 60.000 0.00 0.00 0.00 5.28
8930 13029 2.129146 CCCTCCGTACCCGTGCATA 61.129 63.158 0.00 0.00 0.00 3.14
8936 13035 0.531974 CGTACCCGTGCATAAGCCAT 60.532 55.000 0.00 0.00 41.13 4.40
8942 13041 3.704061 ACCCGTGCATAAGCCATTTTTAT 59.296 39.130 0.00 0.00 41.13 1.40
8943 13042 4.890581 ACCCGTGCATAAGCCATTTTTATA 59.109 37.500 0.00 0.00 41.13 0.98
8951 13050 9.507329 TGCATAAGCCATTTTTATAAAAACCAA 57.493 25.926 22.35 4.27 39.20 3.67
8993 13092 2.351350 CGTGGTGCATTAACTTTCACCC 60.351 50.000 7.67 0.00 46.22 4.61
8994 13093 2.029380 GTGGTGCATTAACTTTCACCCC 60.029 50.000 7.67 0.00 46.22 4.95
9042 13142 8.842358 AAAGAAATCAACCAATAAGAGACGTA 57.158 30.769 0.00 0.00 0.00 3.57
9045 13145 6.540438 AATCAACCAATAAGAGACGTAGGA 57.460 37.500 0.00 0.00 0.00 2.94
9067 13167 8.836268 AGGACGTGTATGTTTTTAATGAGTTA 57.164 30.769 0.00 0.00 0.00 2.24
9090 13190 1.202533 ACTACCTATCACGGCATGCAC 60.203 52.381 21.36 8.08 0.00 4.57
9091 13191 0.249280 TACCTATCACGGCATGCACG 60.249 55.000 21.36 21.64 37.36 5.34
9093 13193 1.521457 CTATCACGGCATGCACGGT 60.521 57.895 25.35 15.60 35.23 4.83
9094 13194 1.490693 CTATCACGGCATGCACGGTC 61.491 60.000 25.35 7.10 35.23 4.79
9095 13195 2.232298 TATCACGGCATGCACGGTCA 62.232 55.000 25.35 13.28 35.23 4.02
9096 13196 2.874648 ATCACGGCATGCACGGTCAT 62.875 55.000 25.35 14.53 35.23 3.06
9097 13197 3.126879 ACGGCATGCACGGTCATG 61.127 61.111 25.35 12.89 44.93 3.07
9098 13198 3.879682 CGGCATGCACGGTCATGG 61.880 66.667 21.36 2.52 42.97 3.66
9100 13200 2.486504 GCATGCACGGTCATGGTG 59.513 61.111 14.21 0.00 42.97 4.17
9134 13306 6.912426 AGATGACTTAGACTACCCATAGTGA 58.088 40.000 0.00 0.00 41.98 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.478780 ACGCAAGGCTTCCCTACA 58.521 55.556 0.00 0.00 41.90 2.74
11 12 3.777925 CGACCGCCTTGACGCAAG 61.778 66.667 11.23 11.23 40.75 4.01
29 30 3.946201 CTAGGCCGGCCCATCTGG 61.946 72.222 41.72 21.77 44.43 3.86
30 31 4.632974 GCTAGGCCGGCCCATCTG 62.633 72.222 41.72 25.96 36.58 2.90
51 52 1.943730 AACAAGGTTGTGGCCTCCCA 61.944 55.000 3.32 0.00 41.31 4.37
52 53 0.759060 AAACAAGGTTGTGGCCTCCC 60.759 55.000 3.32 0.00 41.31 4.30
53 54 1.068588 GAAAACAAGGTTGTGGCCTCC 59.931 52.381 3.32 1.20 41.31 4.30
54 55 2.031870 AGAAAACAAGGTTGTGGCCTC 58.968 47.619 3.32 0.00 41.31 4.70
55 56 2.159179 AGAAAACAAGGTTGTGGCCT 57.841 45.000 3.32 0.00 41.31 5.19
56 57 2.979814 AAGAAAACAAGGTTGTGGCC 57.020 45.000 0.00 0.00 41.31 5.36
57 58 4.503910 AGAAAAGAAAACAAGGTTGTGGC 58.496 39.130 0.00 0.00 41.31 5.01
58 59 6.398095 AGAAGAAAAGAAAACAAGGTTGTGG 58.602 36.000 0.00 0.00 41.31 4.17
59 60 7.814587 AGAAGAAGAAAAGAAAACAAGGTTGTG 59.185 33.333 0.00 0.00 41.31 3.33
60 61 7.814587 CAGAAGAAGAAAAGAAAACAAGGTTGT 59.185 33.333 0.00 0.00 44.72 3.32
61 62 8.028938 TCAGAAGAAGAAAAGAAAACAAGGTTG 58.971 33.333 0.00 0.00 0.00 3.77
62 63 8.122472 TCAGAAGAAGAAAAGAAAACAAGGTT 57.878 30.769 0.00 0.00 0.00 3.50
63 64 7.703058 TCAGAAGAAGAAAAGAAAACAAGGT 57.297 32.000 0.00 0.00 0.00 3.50
64 65 9.591792 AAATCAGAAGAAGAAAAGAAAACAAGG 57.408 29.630 0.00 0.00 0.00 3.61
220 221 9.337396 ACATGAAAAACAAGTTCTCTATACACA 57.663 29.630 0.00 0.00 0.00 3.72
436 437 8.371699 TGCCTTGCTTATAGGTTTAACATTTTT 58.628 29.630 0.00 0.00 35.13 1.94
445 446 4.792068 TGCTATGCCTTGCTTATAGGTTT 58.208 39.130 0.00 0.00 35.13 3.27
472 473 4.708968 CCGCCTATCTCGCTCGCC 62.709 72.222 0.00 0.00 0.00 5.54
479 480 2.015090 GTAACGCGCCGCCTATCTC 61.015 63.158 5.73 0.00 0.00 2.75
526 538 3.824414 AAGAAGACCGTTTTATTGCCG 57.176 42.857 0.00 0.00 0.00 5.69
528 540 4.866921 ACCAAAGAAGACCGTTTTATTGC 58.133 39.130 0.00 0.00 0.00 3.56
626 1337 1.660917 GGCGGTTAGATCGAGAGGG 59.339 63.158 0.00 0.00 0.00 4.30
783 1517 0.744281 TGCGACGCTGGATTAGATGA 59.256 50.000 22.08 0.00 0.00 2.92
815 1549 1.841556 AACAACCTCTCGGGCCTCA 60.842 57.895 0.84 0.00 39.10 3.86
822 1556 2.521958 ATCCCGCCAACAACCTCTCG 62.522 60.000 0.00 0.00 0.00 4.04
887 1625 0.038067 TCGAATCCAACGAGCCGAAA 60.038 50.000 1.50 0.00 34.85 3.46
888 1626 1.587568 TCGAATCCAACGAGCCGAA 59.412 52.632 1.50 0.00 34.85 4.30
1217 1955 1.814394 CAGCTTGCAAGGCACATAAGA 59.186 47.619 27.10 0.00 38.71 2.10
1221 1959 0.824595 TCACAGCTTGCAAGGCACAT 60.825 50.000 27.10 7.06 38.71 3.21
1235 1973 1.815003 GCAGGTTCCAAGGAATCACAG 59.185 52.381 14.17 5.15 37.68 3.66
1256 1994 2.555199 GCAGATCTACCATGTGTCCAC 58.445 52.381 0.00 0.00 0.00 4.02
1300 2038 0.597377 CGTCATACGCTGGCAGCATA 60.597 55.000 35.94 27.96 42.58 3.14
1355 2101 2.269940 CTCATATCCCCGATTCCCCTT 58.730 52.381 0.00 0.00 0.00 3.95
1371 2117 1.633915 CCCCTTGCTGCTCTCCTCAT 61.634 60.000 0.00 0.00 0.00 2.90
1410 2156 0.251341 AATGCTCCCCAGTTCACACC 60.251 55.000 0.00 0.00 0.00 4.16
1411 2157 1.620822 AAATGCTCCCCAGTTCACAC 58.379 50.000 0.00 0.00 0.00 3.82
1461 2207 2.808543 GCCCAGATCTAGTTTAATGCCG 59.191 50.000 0.00 0.00 0.00 5.69
1514 2260 0.969894 CCAGGATAGAAGGGGTAGCG 59.030 60.000 0.00 0.00 0.00 4.26
1517 2263 4.232091 GTTGATCCAGGATAGAAGGGGTA 58.768 47.826 0.32 0.00 0.00 3.69
1522 2268 2.700897 ACGGGTTGATCCAGGATAGAAG 59.299 50.000 0.32 0.00 38.11 2.85
1530 2276 1.447838 CCGACACGGGTTGATCCAG 60.448 63.158 6.62 0.00 44.15 3.86
1582 2328 2.776312 CGTGGAGCATAGTATCACGT 57.224 50.000 11.84 0.00 43.92 4.49
1647 2393 1.211703 TCTTGGCAATCTCCGGCATTA 59.788 47.619 0.00 0.00 38.88 1.90
1690 2436 4.742438 TTAGTGAACAAACAAGATCGGC 57.258 40.909 0.00 0.00 0.00 5.54
1803 2557 2.535331 TCAGAACAAAAAGCAAACGGC 58.465 42.857 0.00 0.00 45.30 5.68
1831 2587 5.251601 ACTCTAACCGAGCTAACAATCTC 57.748 43.478 0.00 0.00 43.85 2.75
1840 2596 4.141914 CCCTATGAAAACTCTAACCGAGCT 60.142 45.833 0.00 0.00 43.85 4.09
1893 2649 1.839354 TCCCTGATAAGCATGAGCACA 59.161 47.619 0.00 0.00 45.49 4.57
1897 2653 3.583806 GACGATCCCTGATAAGCATGAG 58.416 50.000 0.00 0.00 0.00 2.90
1898 2654 2.029918 CGACGATCCCTGATAAGCATGA 60.030 50.000 0.00 0.00 0.00 3.07
1910 2666 6.226052 AGTTATAATAAAACCCGACGATCCC 58.774 40.000 0.00 0.00 0.00 3.85
1915 2671 6.510536 AGGAGAGTTATAATAAAACCCGACG 58.489 40.000 0.00 0.00 0.00 5.12
2049 2824 3.451141 TGCAAATGTGAAAAGGGTGAC 57.549 42.857 0.00 0.00 0.00 3.67
2051 2826 4.023878 CCATTTGCAAATGTGAAAAGGGTG 60.024 41.667 37.23 21.28 45.56 4.61
2054 2830 5.505985 CCAACCATTTGCAAATGTGAAAAGG 60.506 40.000 37.23 27.14 43.24 3.11
2060 2836 4.575645 AGAAACCAACCATTTGCAAATGTG 59.424 37.500 37.23 30.95 43.24 3.21
2107 2887 9.715121 AATGTCTTCAAAATATTTCAATGCACT 57.285 25.926 0.10 0.00 0.00 4.40
2134 2914 6.740110 ACAACAGAAATAAACGCATAAACCA 58.260 32.000 0.00 0.00 0.00 3.67
2374 3154 6.996509 ACAGGCATGAAAATTAAGTGTGAAT 58.003 32.000 4.84 0.00 0.00 2.57
2375 3155 6.403866 ACAGGCATGAAAATTAAGTGTGAA 57.596 33.333 4.84 0.00 0.00 3.18
2410 3195 6.991485 ATAAGACGTTTTGCAGTTCAAATG 57.009 33.333 0.83 0.30 43.53 2.32
2411 3196 9.691362 AAATATAAGACGTTTTGCAGTTCAAAT 57.309 25.926 0.83 0.00 43.53 2.32
2506 3292 6.155827 TCTAAAATCTGCAACAAATTTCCGG 58.844 36.000 0.00 0.00 0.00 5.14
2515 3301 6.151691 GCTTGTGAATCTAAAATCTGCAACA 58.848 36.000 0.00 0.00 0.00 3.33
2546 3332 6.947733 TCTTTGATGTCAATCCTAACCAACAT 59.052 34.615 0.00 0.00 35.55 2.71
2547 3333 6.303054 TCTTTGATGTCAATCCTAACCAACA 58.697 36.000 0.00 0.00 35.55 3.33
2565 3353 6.091076 ACCCATGGAAAGGATTATCTTTGA 57.909 37.500 15.22 0.00 37.13 2.69
2570 3358 4.202151 GCACAACCCATGGAAAGGATTATC 60.202 45.833 15.22 0.00 0.00 1.75
2861 3724 7.784470 AGTAGGAGAGAAAAACATCTAGTGT 57.216 36.000 0.00 0.00 44.84 3.55
2864 3727 8.528044 ACCTAGTAGGAGAGAAAAACATCTAG 57.472 38.462 23.50 0.00 37.67 2.43
2893 3778 8.525316 TGAAAATTGTGCATCAGAAAGTGATAT 58.475 29.630 0.00 0.00 44.73 1.63
2977 3870 4.325028 AACATTGAGCAGCATGTCAAAA 57.675 36.364 0.00 0.00 38.75 2.44
3250 4159 9.902196 GCAAGTTAGCTACAAGGTTTTAAATTA 57.098 29.630 0.00 0.00 0.00 1.40
3306 4218 2.109480 AGTGCTATCATCCAATGGCCAT 59.891 45.455 14.09 14.09 32.58 4.40
3424 4336 7.659799 TGGTCATTTCTTTCTCACTTTCGATAA 59.340 33.333 0.00 0.00 0.00 1.75
3452 4364 7.551585 TGAATAACTTCCAAAGCAACAGAAAA 58.448 30.769 0.00 0.00 0.00 2.29
3674 4587 7.015779 GGCTATAATTAGAGGACCAAAGAGAGT 59.984 40.741 9.09 0.00 0.00 3.24
3701 4616 5.048782 ACAACGTAGTGAATGCACATGAAAT 60.049 36.000 6.60 0.00 45.00 2.17
3782 4697 4.202567 TGTTATGGGCCAAGGATAGATTCC 60.203 45.833 11.89 0.00 45.85 3.01
3805 4721 8.492415 TGCTTTAGGTGGTCATATTAGACTAT 57.508 34.615 0.00 0.00 38.57 2.12
3863 4788 3.149196 ACACATTCGAGACCTGCATTTT 58.851 40.909 0.00 0.00 0.00 1.82
3876 4801 4.854291 GTGAGTTCACTCTAGACACATTCG 59.146 45.833 8.41 0.00 43.25 3.34
3958 4885 1.138859 TGCCCATCTATGTGTCCTTCG 59.861 52.381 0.00 0.00 0.00 3.79
4201 5138 5.807011 GCTTGTTTCCAGCATTATCGAAAAT 59.193 36.000 0.00 0.00 0.00 1.82
4207 5144 4.427312 CCTTGCTTGTTTCCAGCATTATC 58.573 43.478 0.00 0.00 38.43 1.75
4291 5228 3.508012 AGAGCTCCCTTACACATATAGCG 59.492 47.826 10.93 0.00 33.80 4.26
4340 5303 6.478344 GTCAGAAGGTGTCACAGAATATCATC 59.522 42.308 5.12 0.00 0.00 2.92
4367 5330 1.841556 GGTGTCCAGGAGACCCACA 60.842 63.158 23.31 0.00 45.68 4.17
4415 5379 5.695816 TCCTTGTGAAATTTGCTTAACATGC 59.304 36.000 0.00 0.00 0.00 4.06
4462 5426 3.313526 GCTGCATGGGTTGATAACTAGTG 59.686 47.826 0.00 0.00 0.00 2.74
4489 5453 7.033791 ACGTGTCATATAAAATATCTAGCCCG 58.966 38.462 0.00 0.00 0.00 6.13
4521 5485 8.738645 AAGAAATATATTGCTCGACCTTTCTT 57.261 30.769 6.41 2.62 37.05 2.52
4552 5516 1.073284 ACACAAGGAGCCCGTAATGTT 59.927 47.619 0.00 0.00 0.00 2.71
4556 5520 1.373435 CCACACAAGGAGCCCGTAA 59.627 57.895 0.00 0.00 0.00 3.18
4608 5572 2.945008 CTGTTGCACTCTGAAGTTTCCA 59.055 45.455 0.00 0.00 31.71 3.53
4621 5585 8.385111 CAATTTTTCATCATATTCCTGTTGCAC 58.615 33.333 0.00 0.00 0.00 4.57
4646 5610 2.559668 ACGACTATTTCTGACGGGTTCA 59.440 45.455 0.00 0.00 0.00 3.18
4652 5616 6.922980 TGACTTAAACGACTATTTCTGACG 57.077 37.500 0.00 0.00 0.00 4.35
4668 5632 8.911918 TGTCTGCCTAAATAAAGTTGACTTAA 57.088 30.769 0.00 0.00 34.61 1.85
4690 5654 5.282055 TCCAGGAGATCATGTACATTGTC 57.718 43.478 5.37 7.34 0.00 3.18
4692 5656 5.469084 CACATCCAGGAGATCATGTACATTG 59.531 44.000 5.37 0.00 30.59 2.82
4793 5757 9.109393 GATGTAACAATGCAAGGATTAGTAGAA 57.891 33.333 0.00 0.00 0.00 2.10
4870 5834 2.203337 GTGGCTGTTGGTGCTCCA 60.203 61.111 2.64 2.64 42.66 3.86
4874 5838 1.247567 ATTAGTGTGGCTGTTGGTGC 58.752 50.000 0.00 0.00 0.00 5.01
4883 5847 7.038154 TCCATTAGCAAATAATTAGTGTGGC 57.962 36.000 0.00 0.00 31.40 5.01
4919 5883 1.762419 TCGAACGAAGAGTGGAAACG 58.238 50.000 0.00 0.00 0.00 3.60
4932 5896 6.670990 ATAGTAAGTTGCGATATTCGAACG 57.329 37.500 0.00 0.28 43.74 3.95
4933 5897 8.628279 CACTATAGTAAGTTGCGATATTCGAAC 58.372 37.037 4.74 3.25 43.74 3.95
4944 5908 3.531538 TGCTGGCACTATAGTAAGTTGC 58.468 45.455 4.74 4.40 0.00 4.17
4960 5924 0.685131 TGCCAAGGGATGATTGCTGG 60.685 55.000 0.00 0.00 0.00 4.85
4962 5926 2.170012 AATGCCAAGGGATGATTGCT 57.830 45.000 0.00 0.00 0.00 3.91
4963 5927 3.385755 AGTTAATGCCAAGGGATGATTGC 59.614 43.478 0.00 0.00 0.00 3.56
5072 6038 2.186903 GATGGAAGAAGGGCGCGA 59.813 61.111 12.10 0.00 0.00 5.87
5073 6039 1.884926 GAGATGGAAGAAGGGCGCG 60.885 63.158 0.00 0.00 0.00 6.86
5075 6041 1.147153 GGGAGATGGAAGAAGGGCG 59.853 63.158 0.00 0.00 0.00 6.13
5116 6082 3.422417 CATCCATGCAAGCTTTCTCAG 57.578 47.619 0.00 0.00 0.00 3.35
5130 6096 0.033796 CCACCTTCACTGGCATCCAT 60.034 55.000 0.00 0.00 30.82 3.41
5153 6119 2.811317 GGAGCAACACGAGCCTCG 60.811 66.667 13.52 13.52 46.93 4.63
5156 6122 2.171489 GAAACGGAGCAACACGAGCC 62.171 60.000 0.00 0.00 0.00 4.70
5211 6178 4.873129 CCACCGTCTCGCCATCCG 62.873 72.222 0.00 0.00 38.61 4.18
5212 6179 3.771160 ACCACCGTCTCGCCATCC 61.771 66.667 0.00 0.00 0.00 3.51
5222 6189 1.049855 TACCACCAAGACACCACCGT 61.050 55.000 0.00 0.00 0.00 4.83
5228 6195 1.375523 CCGCCTACCACCAAGACAC 60.376 63.158 0.00 0.00 0.00 3.67
5283 6250 3.948719 AACTCCTCGCCGCCCAAA 61.949 61.111 0.00 0.00 0.00 3.28
5317 6284 1.627550 GCCGAAGAAGGACTTGCGTC 61.628 60.000 0.00 0.00 39.13 5.19
5339 6306 2.271497 CTTCAGCTCTGGGGCCTG 59.729 66.667 0.84 0.00 0.00 4.85
5346 6313 1.153549 GGCCGTACCTTCAGCTCTG 60.154 63.158 0.00 0.00 34.51 3.35
5365 6332 2.660064 CCAGGGTTGACGAGGAGGG 61.660 68.421 0.00 0.00 0.00 4.30
5374 6341 4.329545 GCCGAGCACCAGGGTTGA 62.330 66.667 0.00 0.00 0.00 3.18
5417 6384 2.033194 GCAACACCTACACCTCGCC 61.033 63.158 0.00 0.00 0.00 5.54
5418 6385 1.291877 CTGCAACACCTACACCTCGC 61.292 60.000 0.00 0.00 0.00 5.03
5419 6386 0.670546 CCTGCAACACCTACACCTCG 60.671 60.000 0.00 0.00 0.00 4.63
5420 6387 0.396811 ACCTGCAACACCTACACCTC 59.603 55.000 0.00 0.00 0.00 3.85
5421 6388 0.396811 GACCTGCAACACCTACACCT 59.603 55.000 0.00 0.00 0.00 4.00
5436 6403 2.355484 TTTCCCCTGGACCCAGACCT 62.355 60.000 17.19 0.00 46.30 3.85
5484 6451 4.678743 GGCACCCTTGGGTGTCCC 62.679 72.222 31.97 23.98 45.71 4.46
5485 6452 3.897122 TGGCACCCTTGGGTGTCC 61.897 66.667 32.73 30.63 43.04 4.02
5489 6459 1.152546 GAAAGTGGCACCCTTGGGT 60.153 57.895 15.27 5.34 0.00 4.51
5498 6468 1.463214 TCCAGGGAGGAAAGTGGCA 60.463 57.895 0.00 0.00 45.65 4.92
5499 6469 3.495729 TCCAGGGAGGAAAGTGGC 58.504 61.111 0.00 0.00 45.65 5.01
5521 6491 1.139947 GAGAAAGAGTCCTCGGCCG 59.860 63.158 22.12 22.12 34.09 6.13
5525 6495 0.533032 GGTGGGAGAAAGAGTCCTCG 59.467 60.000 0.00 0.00 34.16 4.63
5548 6518 0.889186 TTTCGCTCAGGAAAGTGGCC 60.889 55.000 0.00 0.00 32.45 5.36
5578 6548 0.897621 ACACACATCGATCCAGAGCA 59.102 50.000 0.00 0.00 0.00 4.26
5588 6558 1.204062 GAACACGGCACACACATCG 59.796 57.895 0.00 0.00 0.00 3.84
5589 6559 0.512952 GAGAACACGGCACACACATC 59.487 55.000 0.00 0.00 0.00 3.06
5590 6560 0.884704 GGAGAACACGGCACACACAT 60.885 55.000 0.00 0.00 0.00 3.21
5591 6561 1.522806 GGAGAACACGGCACACACA 60.523 57.895 0.00 0.00 0.00 3.72
5592 6562 0.814010 AAGGAGAACACGGCACACAC 60.814 55.000 0.00 0.00 0.00 3.82
5593 6563 0.813610 CAAGGAGAACACGGCACACA 60.814 55.000 0.00 0.00 0.00 3.72
5595 6565 1.227823 CCAAGGAGAACACGGCACA 60.228 57.895 0.00 0.00 0.00 4.57
5597 6567 1.118965 TCTCCAAGGAGAACACGGCA 61.119 55.000 16.19 0.00 46.89 5.69
5598 6568 1.671742 TCTCCAAGGAGAACACGGC 59.328 57.895 16.19 0.00 46.89 5.68
5617 6599 3.329889 AGCATTCCCAGGACGGCA 61.330 61.111 10.44 0.00 0.00 5.69
5621 6603 4.645809 GTCCAGCATTCCCAGGAC 57.354 61.111 0.00 0.00 43.18 3.85
5625 6607 1.002069 ATCCAAGTCCAGCATTCCCA 58.998 50.000 0.00 0.00 0.00 4.37
5653 6635 1.893808 GCACACCTCCACACCACAG 60.894 63.158 0.00 0.00 0.00 3.66
5674 6656 1.010574 CGCTAGAGACTCGAAGCCG 60.011 63.158 20.52 14.33 29.99 5.52
5680 6662 2.025441 GCTGCCGCTAGAGACTCG 59.975 66.667 0.00 0.00 0.00 4.18
5702 6684 3.071023 CCGGACCTGCAGAAAATAGGATA 59.929 47.826 17.39 0.00 35.55 2.59
5705 6687 1.668419 CCGGACCTGCAGAAAATAGG 58.332 55.000 17.39 6.90 37.61 2.57
5731 6713 1.237285 CGGAGAGCACCAACAAAGGG 61.237 60.000 0.00 0.00 0.00 3.95
5751 6733 3.583276 CTACCAGCGCACACCGGAA 62.583 63.158 9.46 0.00 37.44 4.30
5763 6745 3.845781 ATGAACATACCAGGCTACCAG 57.154 47.619 0.00 0.00 0.00 4.00
5769 6751 3.412386 GACCCATATGAACATACCAGGC 58.588 50.000 3.65 0.00 0.00 4.85
5770 6752 3.323691 TCGACCCATATGAACATACCAGG 59.676 47.826 3.65 0.00 0.00 4.45
5771 6753 4.202212 TGTCGACCCATATGAACATACCAG 60.202 45.833 14.12 0.00 0.00 4.00
5784 6766 1.051812 GGATGAGGATGTCGACCCAT 58.948 55.000 14.12 8.44 0.00 4.00
5800 6782 0.104934 ATCCACTTCCGCCTAGGGAT 60.105 55.000 11.72 0.00 41.52 3.85
5809 6791 1.275291 ACACTACCACATCCACTTCCG 59.725 52.381 0.00 0.00 0.00 4.30
5813 6795 2.972713 ACTTGACACTACCACATCCACT 59.027 45.455 0.00 0.00 0.00 4.00
5814 6796 3.402628 ACTTGACACTACCACATCCAC 57.597 47.619 0.00 0.00 0.00 4.02
5817 6799 5.720202 TCACATACTTGACACTACCACATC 58.280 41.667 0.00 0.00 0.00 3.06
5818 6800 5.738619 TCACATACTTGACACTACCACAT 57.261 39.130 0.00 0.00 0.00 3.21
5819 6801 5.337250 GGATCACATACTTGACACTACCACA 60.337 44.000 0.00 0.00 0.00 4.17
5824 6806 4.948004 ACTCGGATCACATACTTGACACTA 59.052 41.667 0.00 0.00 0.00 2.74
5830 6812 2.205074 GGCACTCGGATCACATACTTG 58.795 52.381 0.00 0.00 0.00 3.16
5903 6885 3.365265 GAACAGCACCGGGCCAAG 61.365 66.667 6.32 0.00 46.50 3.61
5904 6886 2.920076 AAAGAACAGCACCGGGCCAA 62.920 55.000 6.32 0.00 46.50 4.52
5905 6887 3.429372 AAAGAACAGCACCGGGCCA 62.429 57.895 6.32 0.00 46.50 5.36
5906 6888 2.597510 AAAGAACAGCACCGGGCC 60.598 61.111 6.32 0.00 46.50 5.80
5907 6889 2.954611 GAAAGAACAGCACCGGGC 59.045 61.111 6.32 6.61 45.30 6.13
5908 6890 1.566018 GACGAAAGAACAGCACCGGG 61.566 60.000 6.32 0.00 0.00 5.73
5909 6891 0.600255 AGACGAAAGAACAGCACCGG 60.600 55.000 0.00 0.00 0.00 5.28
5910 6892 1.217882 AAGACGAAAGAACAGCACCG 58.782 50.000 0.00 0.00 0.00 4.94
5911 6893 2.612212 TCAAAGACGAAAGAACAGCACC 59.388 45.455 0.00 0.00 0.00 5.01
5912 6894 3.944422 TCAAAGACGAAAGAACAGCAC 57.056 42.857 0.00 0.00 0.00 4.40
5913 6895 4.335315 ACAATCAAAGACGAAAGAACAGCA 59.665 37.500 0.00 0.00 0.00 4.41
5914 6896 4.848757 ACAATCAAAGACGAAAGAACAGC 58.151 39.130 0.00 0.00 0.00 4.40
5915 6897 5.909610 GGAACAATCAAAGACGAAAGAACAG 59.090 40.000 0.00 0.00 0.00 3.16
5916 6898 5.588648 AGGAACAATCAAAGACGAAAGAACA 59.411 36.000 0.00 0.00 0.00 3.18
5917 6899 6.061231 AGGAACAATCAAAGACGAAAGAAC 57.939 37.500 0.00 0.00 0.00 3.01
5918 6900 6.990349 ACTAGGAACAATCAAAGACGAAAGAA 59.010 34.615 0.00 0.00 0.00 2.52
5919 6901 6.522054 ACTAGGAACAATCAAAGACGAAAGA 58.478 36.000 0.00 0.00 0.00 2.52
5920 6902 6.787085 ACTAGGAACAATCAAAGACGAAAG 57.213 37.500 0.00 0.00 0.00 2.62
5921 6903 6.367969 GCTACTAGGAACAATCAAAGACGAAA 59.632 38.462 0.00 0.00 0.00 3.46
5922 6904 5.867716 GCTACTAGGAACAATCAAAGACGAA 59.132 40.000 0.00 0.00 0.00 3.85
5923 6905 5.185249 AGCTACTAGGAACAATCAAAGACGA 59.815 40.000 0.00 0.00 0.00 4.20
5924 6906 5.411781 AGCTACTAGGAACAATCAAAGACG 58.588 41.667 0.00 0.00 0.00 4.18
5925 6907 7.148390 GGAAAGCTACTAGGAACAATCAAAGAC 60.148 40.741 0.00 0.00 0.00 3.01
5926 6908 6.879458 GGAAAGCTACTAGGAACAATCAAAGA 59.121 38.462 0.00 0.00 0.00 2.52
5927 6909 6.094186 GGGAAAGCTACTAGGAACAATCAAAG 59.906 42.308 0.00 0.00 0.00 2.77
5936 6918 3.775316 CAAGGAGGGAAAGCTACTAGGAA 59.225 47.826 0.00 0.00 0.00 3.36
6013 6995 4.336433 ACACAGAGACTTCACAACAAATGG 59.664 41.667 0.00 0.00 0.00 3.16
6015 6997 4.336433 CCACACAGAGACTTCACAACAAAT 59.664 41.667 0.00 0.00 0.00 2.32
6032 7014 2.279851 CGGCTTCACGACCACACA 60.280 61.111 0.00 0.00 35.47 3.72
6048 7030 3.004524 CCCGAGAATTAGGTAAGGAGTCG 59.995 52.174 0.00 0.00 0.00 4.18
6050 7032 3.705072 CACCCGAGAATTAGGTAAGGAGT 59.295 47.826 0.00 0.00 30.98 3.85
6057 7039 0.460311 CGCTCACCCGAGAATTAGGT 59.540 55.000 0.00 0.00 42.34 3.08
6088 7070 0.874175 CGAAAGACACTGCACCGTCA 60.874 55.000 12.13 0.00 34.48 4.35
6092 7074 1.569479 GGCTCGAAAGACACTGCACC 61.569 60.000 0.00 0.00 35.39 5.01
6097 7079 0.318762 GTCCTGGCTCGAAAGACACT 59.681 55.000 0.00 0.00 34.81 3.55
6099 7081 1.176619 TCGTCCTGGCTCGAAAGACA 61.177 55.000 10.35 0.00 38.59 3.41
6127 7109 3.787001 CACGGGAAGAGAGGGCCC 61.787 72.222 16.46 16.46 38.53 5.80
6129 7111 4.475135 GCCACGGGAAGAGAGGGC 62.475 72.222 0.00 0.00 0.00 5.19
6183 7165 4.827284 CCACCACACTGAAGAACCTAAAAT 59.173 41.667 0.00 0.00 0.00 1.82
6233 7215 4.697352 ACAGCAAGCACGAGATAGAAAATT 59.303 37.500 0.00 0.00 0.00 1.82
6245 7227 1.954437 CAATACACACAGCAAGCACG 58.046 50.000 0.00 0.00 0.00 5.34
6304 7286 3.790820 CACAAGACCAACATGAAACAACG 59.209 43.478 0.00 0.00 0.00 4.10
6312 7294 4.156556 CAGGGATTACACAAGACCAACATG 59.843 45.833 0.00 0.00 0.00 3.21
6315 7297 3.081804 CCAGGGATTACACAAGACCAAC 58.918 50.000 0.00 0.00 0.00 3.77
6321 7303 0.331278 TGGGCCAGGGATTACACAAG 59.669 55.000 0.00 0.00 0.00 3.16
6340 7322 1.741706 CAAGAAGAGCACGCCATCAAT 59.258 47.619 0.00 0.00 0.00 2.57
6419 7401 3.700038 TCTTCTCGTCTCCCTAATTGTCC 59.300 47.826 0.00 0.00 0.00 4.02
6516 7498 3.136443 AGGGTTTCTTGTCAGTCATCACA 59.864 43.478 0.00 0.00 0.00 3.58
6525 7507 1.217916 TGTGGGAGGGTTTCTTGTCA 58.782 50.000 0.00 0.00 0.00 3.58
6551 7533 4.926238 CGTCTCATTGTTAGAAGTCAAGCT 59.074 41.667 0.00 0.00 0.00 3.74
6561 7543 4.088638 CGACACACTTCGTCTCATTGTTAG 59.911 45.833 0.00 0.00 34.16 2.34
6584 7566 7.047271 AGTCTCCTAGAAAGAGCAATGAATTC 58.953 38.462 0.00 0.00 0.00 2.17
6612 7594 0.106268 TTGCAGGCTGAGGTTTCCAA 60.106 50.000 20.86 8.04 0.00 3.53
6622 7604 1.814394 TGTTTCTATGCTTGCAGGCTG 59.186 47.619 22.31 10.94 0.00 4.85
6656 7640 2.946785 CCCTCTACTACACACTAGGGG 58.053 57.143 0.00 0.00 40.07 4.79
6709 7693 9.520204 CTTCAGTAACAGTGACATGAAAAATTT 57.480 29.630 0.00 0.00 0.00 1.82
6778 7771 2.293170 TCCATGTTTTCGTCAACAGCA 58.707 42.857 7.93 0.00 40.01 4.41
6812 7805 7.781324 AATTTGGGACTGAATTATGACTGTT 57.219 32.000 0.00 0.00 0.00 3.16
6887 7887 4.515191 TGTCTTCATGTTTACCAGTCAAGC 59.485 41.667 0.00 0.00 0.00 4.01
6888 7888 6.618287 TTGTCTTCATGTTTACCAGTCAAG 57.382 37.500 0.00 0.00 0.00 3.02
6901 7901 5.707298 AGGTTTACCTGTGATTGTCTTCATG 59.293 40.000 0.00 0.00 46.55 3.07
6902 7902 5.880901 AGGTTTACCTGTGATTGTCTTCAT 58.119 37.500 0.00 0.00 46.55 2.57
6975 7975 4.660789 ATCGGTTGTGGGTATACTGTAC 57.339 45.455 2.25 0.86 0.00 2.90
6977 7977 4.563140 AAATCGGTTGTGGGTATACTGT 57.437 40.909 2.25 0.00 0.00 3.55
7005 8005 7.977904 TCATAAGTGCATGTATTCTGAAACAG 58.022 34.615 0.00 0.00 0.00 3.16
7045 8045 5.483937 TGTATTGGTCGGGCTCAGAATATAT 59.516 40.000 0.00 0.00 0.00 0.86
7046 8046 4.836175 TGTATTGGTCGGGCTCAGAATATA 59.164 41.667 0.00 0.00 0.00 0.86
7047 8047 3.646162 TGTATTGGTCGGGCTCAGAATAT 59.354 43.478 0.00 0.00 0.00 1.28
7048 8048 3.035363 TGTATTGGTCGGGCTCAGAATA 58.965 45.455 0.00 0.00 0.00 1.75
7049 8049 1.837439 TGTATTGGTCGGGCTCAGAAT 59.163 47.619 0.00 0.00 0.00 2.40
7050 8050 1.271856 TGTATTGGTCGGGCTCAGAA 58.728 50.000 0.00 0.00 0.00 3.02
7051 8051 1.271856 TTGTATTGGTCGGGCTCAGA 58.728 50.000 0.00 0.00 0.00 3.27
7068 8068 8.299570 ACTTCAGCAGATAAAGGTGTAAAATTG 58.700 33.333 0.00 0.00 36.02 2.32
7074 8074 6.436218 TCAGTACTTCAGCAGATAAAGGTGTA 59.564 38.462 0.00 0.00 36.02 2.90
7090 8090 5.047235 ACACCATTCCTGTAGTCAGTACTTC 60.047 44.000 0.00 0.00 39.82 3.01
7123 8123 1.259609 CCCATTGAGCACATGGTGTT 58.740 50.000 0.00 0.00 35.75 3.32
7134 8135 2.242043 AGTTTTCCTGTGCCCATTGAG 58.758 47.619 0.00 0.00 0.00 3.02
7135 8136 2.380064 AGTTTTCCTGTGCCCATTGA 57.620 45.000 0.00 0.00 0.00 2.57
7138 8139 3.157087 CACTTAGTTTTCCTGTGCCCAT 58.843 45.455 0.00 0.00 0.00 4.00
7218 8231 6.875076 AGTACGGATGTGCTTAACTAATTCT 58.125 36.000 0.00 0.00 37.86 2.40
7351 8365 6.707608 TGTCGGATCAAGAAATCTATGGAATG 59.292 38.462 0.00 0.00 0.00 2.67
7354 8368 5.869649 TGTCGGATCAAGAAATCTATGGA 57.130 39.130 0.00 0.00 0.00 3.41
7356 8370 7.332926 CCCTAATGTCGGATCAAGAAATCTATG 59.667 40.741 0.00 0.00 0.00 2.23
7357 8371 7.235606 TCCCTAATGTCGGATCAAGAAATCTAT 59.764 37.037 0.00 0.00 0.00 1.98
7358 8372 6.553476 TCCCTAATGTCGGATCAAGAAATCTA 59.447 38.462 0.00 0.00 0.00 1.98
7360 8374 5.611374 TCCCTAATGTCGGATCAAGAAATC 58.389 41.667 0.00 0.00 0.00 2.17
7372 8389 8.099364 ACAAATATGCTTTATCCCTAATGTCG 57.901 34.615 0.00 0.00 0.00 4.35
7398 8415 3.000727 GAGTTCATAACAAGGACCCACG 58.999 50.000 0.00 0.00 0.00 4.94
7467 8484 4.798574 CAATCCTTTCCGAACTCAAAAGG 58.201 43.478 11.70 11.70 46.82 3.11
7469 8486 3.888930 AGCAATCCTTTCCGAACTCAAAA 59.111 39.130 0.00 0.00 0.00 2.44
7524 8542 2.633860 GCAGCCAGCACAGTAGTTT 58.366 52.632 0.00 0.00 44.79 2.66
7689 8710 6.552008 AGAATTTGTCCCAGAGGAATAACAA 58.448 36.000 0.00 0.00 46.38 2.83
7767 8872 3.443681 GCAACACAGTAATAAGGCACCAT 59.556 43.478 0.00 0.00 0.00 3.55
8019 9154 9.773328 CATATACAACAACAATGAAGTAACTGG 57.227 33.333 0.00 0.00 0.00 4.00
8025 9160 6.801377 CGCAACATATACAACAACAATGAAGT 59.199 34.615 0.00 0.00 0.00 3.01
8052 9187 1.676384 GCTGTCTTCAGGACCTGCT 59.324 57.895 17.33 0.00 43.89 4.24
8086 9221 5.103000 CGGTACAGTCTTCCATACTTTCAG 58.897 45.833 0.00 0.00 0.00 3.02
8103 9238 4.022935 AGTGTATCTTCGACAAACGGTACA 60.023 41.667 0.00 0.00 42.82 2.90
8109 9244 4.474113 AGACGAGTGTATCTTCGACAAAC 58.526 43.478 0.51 0.00 31.58 2.93
8205 9340 1.073284 TGGGCAGAGACCAAAACCTAC 59.927 52.381 0.00 0.00 38.06 3.18
8239 9374 1.569479 GAGAGGCAACGCACAGGAAC 61.569 60.000 0.00 0.00 46.39 3.62
8248 9383 0.671781 CCACCAAGAGAGAGGCAACG 60.672 60.000 0.00 0.00 46.39 4.10
8253 9388 3.710209 ATGTTTCCACCAAGAGAGAGG 57.290 47.619 0.00 0.00 0.00 3.69
8278 9416 2.089201 CAATGAATGGCAGCTCAGACA 58.911 47.619 7.94 0.00 0.00 3.41
8296 9436 1.533625 GGCAATGTAGTGACAGCCAA 58.466 50.000 0.00 0.00 43.32 4.52
8313 9453 7.559590 AACAAACTCTGAAGATACATATGGC 57.440 36.000 7.80 0.00 0.00 4.40
8346 9486 4.631813 AGATATGTGTCCGAAAAGAACTGC 59.368 41.667 0.00 0.00 0.00 4.40
8352 9495 4.421058 TCACGAGATATGTGTCCGAAAAG 58.579 43.478 0.00 0.00 38.48 2.27
8355 9498 4.649088 AATCACGAGATATGTGTCCGAA 57.351 40.909 0.00 0.00 38.48 4.30
8361 9504 5.292834 ACAGCTTCAAATCACGAGATATGTG 59.707 40.000 0.00 0.00 38.70 3.21
8372 9515 3.822735 CCTTCTCCAACAGCTTCAAATCA 59.177 43.478 0.00 0.00 0.00 2.57
8415 9558 3.870606 CACGTACAGGGCTTTCGG 58.129 61.111 0.00 0.00 0.00 4.30
8430 9573 2.819608 TCACTCAGCCCTAAAATTGCAC 59.180 45.455 0.00 0.00 0.00 4.57
8435 9578 3.950395 GAGCAATCACTCAGCCCTAAAAT 59.050 43.478 0.00 0.00 36.65 1.82
8440 9583 1.203441 TGGAGCAATCACTCAGCCCT 61.203 55.000 0.00 0.00 38.50 5.19
8441 9584 0.106819 ATGGAGCAATCACTCAGCCC 60.107 55.000 0.00 0.00 38.50 5.19
8444 9587 4.669206 ACTAGATGGAGCAATCACTCAG 57.331 45.455 0.00 0.00 38.50 3.35
8445 9588 5.181009 CAAACTAGATGGAGCAATCACTCA 58.819 41.667 0.00 0.00 38.50 3.41
8474 9617 7.549488 CAGGGTAACTCTGTTTTGGTATAGAAG 59.451 40.741 0.00 0.00 32.28 2.85
8475 9618 7.016858 ACAGGGTAACTCTGTTTTGGTATAGAA 59.983 37.037 0.00 0.00 42.94 2.10
8476 9619 6.499350 ACAGGGTAACTCTGTTTTGGTATAGA 59.501 38.462 0.00 0.00 42.94 1.98
8477 9620 6.708285 ACAGGGTAACTCTGTTTTGGTATAG 58.292 40.000 0.00 0.00 42.94 1.31
8478 9621 6.691255 ACAGGGTAACTCTGTTTTGGTATA 57.309 37.500 0.00 0.00 42.94 1.47
8479 9622 5.578157 ACAGGGTAACTCTGTTTTGGTAT 57.422 39.130 0.00 0.00 42.94 2.73
8507 9650 9.688592 CTGATAAAAATTGAGCAACTCTTTCTT 57.311 29.630 0.00 0.00 0.00 2.52
8707 9969 6.427853 TGATTGATCACTTGAAACACGAAGAT 59.572 34.615 0.00 0.00 0.00 2.40
8802 12895 0.826256 AGTGTGTGTACGGCCTCTGA 60.826 55.000 0.00 0.00 0.00 3.27
8808 12901 1.194547 CAATGTCAGTGTGTGTACGGC 59.805 52.381 0.00 0.00 0.00 5.68
8811 12904 2.611751 TGCACAATGTCAGTGTGTGTAC 59.388 45.455 28.41 15.75 46.58 2.90
8846 12939 1.079127 ACGTGGATTCCTCAAGGCG 60.079 57.895 3.95 2.30 34.44 5.52
8888 12987 7.041098 GGGAGTAGTTTATAGGAATGCATGTTG 60.041 40.741 0.00 0.00 0.00 3.33
8904 13003 1.857965 GGGTACGGAGGGAGTAGTTT 58.142 55.000 0.00 0.00 0.00 2.66
8912 13011 1.678598 TTATGCACGGGTACGGAGGG 61.679 60.000 0.00 0.00 46.48 4.30
8921 13020 2.671130 AAAAATGGCTTATGCACGGG 57.329 45.000 2.72 0.00 41.91 5.28
8923 13022 8.113675 GGTTTTTATAAAAATGGCTTATGCACG 58.886 33.333 22.66 0.00 39.75 5.34
8924 13023 8.940952 TGGTTTTTATAAAAATGGCTTATGCAC 58.059 29.630 22.66 8.89 39.75 4.57
8951 13050 7.773690 ACCACGCCTAAGTATTTTGAGATTATT 59.226 33.333 0.00 0.00 0.00 1.40
8955 13054 4.876107 CACCACGCCTAAGTATTTTGAGAT 59.124 41.667 0.00 0.00 0.00 2.75
8964 13063 3.055675 AGTTAATGCACCACGCCTAAGTA 60.056 43.478 0.00 0.00 41.33 2.24
8968 13067 2.483014 AAGTTAATGCACCACGCCTA 57.517 45.000 0.00 0.00 41.33 3.93
8987 13086 6.369629 TGTCAAGAAATAAGAAAGGGGTGAA 58.630 36.000 0.00 0.00 0.00 3.18
9020 13120 7.010275 GTCCTACGTCTCTTATTGGTTGATTTC 59.990 40.741 0.00 0.00 0.00 2.17
9021 13121 6.817140 GTCCTACGTCTCTTATTGGTTGATTT 59.183 38.462 0.00 0.00 0.00 2.17
9042 13142 7.739498 AACTCATTAAAAACATACACGTCCT 57.261 32.000 0.00 0.00 0.00 3.85
9067 13167 2.224066 GCATGCCGTGATAGGTAGTCTT 60.224 50.000 6.36 0.00 0.00 3.01
9078 13178 3.604129 ATGACCGTGCATGCCGTGA 62.604 57.895 16.68 3.10 0.00 4.35
9090 13190 1.929230 TACGTTATGCACCATGACCG 58.071 50.000 0.00 0.00 28.35 4.79
9091 13191 3.527533 TCTTACGTTATGCACCATGACC 58.472 45.455 0.00 0.00 28.35 4.02
9093 13193 4.808895 GTCATCTTACGTTATGCACCATGA 59.191 41.667 0.00 0.00 0.00 3.07
9094 13194 4.811024 AGTCATCTTACGTTATGCACCATG 59.189 41.667 0.00 0.00 0.00 3.66
9095 13195 5.023533 AGTCATCTTACGTTATGCACCAT 57.976 39.130 0.00 0.00 0.00 3.55
9096 13196 4.465632 AGTCATCTTACGTTATGCACCA 57.534 40.909 0.00 0.00 0.00 4.17
9097 13197 6.198591 GTCTAAGTCATCTTACGTTATGCACC 59.801 42.308 0.00 0.00 35.36 5.01
9098 13198 6.973474 AGTCTAAGTCATCTTACGTTATGCAC 59.027 38.462 0.00 0.00 35.36 4.57
9100 13200 7.590689 GGTAGTCTAAGTCATCTTACGTTATGC 59.409 40.741 0.00 0.00 35.36 3.14
9101 13201 8.074972 GGGTAGTCTAAGTCATCTTACGTTATG 58.925 40.741 0.00 0.00 35.36 1.90
9102 13202 7.776969 TGGGTAGTCTAAGTCATCTTACGTTAT 59.223 37.037 0.00 0.00 35.36 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.