Multiple sequence alignment - TraesCS1D01G059700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G059700 chr1D 100.000 7157 0 0 1 7157 39942390 39949546 0.000000e+00 13217.0
1 TraesCS1D01G059700 chr1D 92.386 394 29 1 1637 2029 39943946 39944339 1.740000e-155 560.0
2 TraesCS1D01G059700 chr1D 92.386 394 29 1 1557 1950 39944026 39944418 1.740000e-155 560.0
3 TraesCS1D01G059700 chr1D 92.405 316 23 1 1715 2029 39943944 39944259 3.940000e-122 449.0
4 TraesCS1D01G059700 chr1D 92.405 316 23 1 1555 1870 39944104 39944418 3.940000e-122 449.0
5 TraesCS1D01G059700 chr1D 91.489 235 19 1 1556 1790 39944185 39944418 8.960000e-84 322.0
6 TraesCS1D01G059700 chr1D 83.036 336 53 4 4254 4587 39946559 39946892 1.170000e-77 302.0
7 TraesCS1D01G059700 chr1D 83.036 336 53 4 4170 4503 39946643 39946976 1.170000e-77 302.0
8 TraesCS1D01G059700 chr1D 98.182 165 3 0 6381 6545 9218372 9218208 9.080000e-74 289.0
9 TraesCS1D01G059700 chr1D 88.725 204 20 1 4857 5060 39947123 39947323 5.550000e-61 246.0
10 TraesCS1D01G059700 chr1D 88.725 204 20 1 4734 4934 39947246 39947449 5.550000e-61 246.0
11 TraesCS1D01G059700 chr1D 92.308 156 11 1 1555 1710 39944264 39944418 3.360000e-53 220.0
12 TraesCS1D01G059700 chr1D 81.349 252 45 2 4338 4588 39946559 39946809 3.380000e-48 204.0
13 TraesCS1D01G059700 chr1D 81.349 252 45 2 4170 4420 39946727 39946977 3.380000e-48 204.0
14 TraesCS1D01G059700 chr1D 93.966 116 7 0 5818 5933 39948150 39948265 7.380000e-40 176.0
15 TraesCS1D01G059700 chr1D 93.966 116 7 0 5761 5876 39948207 39948322 7.380000e-40 176.0
16 TraesCS1D01G059700 chr1D 94.030 67 4 0 4795 4861 39947028 39947094 1.270000e-17 102.0
17 TraesCS1D01G059700 chr1D 94.030 67 4 0 4639 4705 39947184 39947250 1.270000e-17 102.0
18 TraesCS1D01G059700 chr1A 95.089 1853 64 14 2857 4692 39404771 39406613 0.000000e+00 2892.0
19 TraesCS1D01G059700 chr1A 95.417 1200 52 1 4734 5933 39406748 39407944 0.000000e+00 1908.0
20 TraesCS1D01G059700 chr1A 93.559 885 48 5 1949 2828 39403823 39404703 0.000000e+00 1310.0
21 TraesCS1D01G059700 chr1A 87.241 870 38 26 643 1487 39402316 39403137 0.000000e+00 924.0
22 TraesCS1D01G059700 chr1A 92.013 626 38 8 5756 6377 39407824 39408441 0.000000e+00 869.0
23 TraesCS1D01G059700 chr1A 96.078 357 11 1 4704 5060 39406595 39406948 4.810000e-161 579.0
24 TraesCS1D01G059700 chr1A 91.858 393 30 2 1478 1870 39403175 39403565 1.360000e-151 547.0
25 TraesCS1D01G059700 chr1A 93.575 358 4 3 6802 7157 39408744 39409084 3.830000e-142 516.0
26 TraesCS1D01G059700 chr1A 92.357 314 24 0 1637 1950 39403252 39403565 1.420000e-121 448.0
27 TraesCS1D01G059700 chr1A 91.167 317 27 1 1715 2030 39403250 39403566 5.130000e-116 429.0
28 TraesCS1D01G059700 chr1A 94.037 218 13 0 6543 6760 39408458 39408675 1.490000e-86 331.0
29 TraesCS1D01G059700 chr1A 84.524 336 48 4 4170 4503 39406175 39406508 5.350000e-86 329.0
30 TraesCS1D01G059700 chr1A 85.174 317 45 2 4272 4587 39406109 39406424 2.490000e-84 324.0
31 TraesCS1D01G059700 chr1A 91.102 236 21 0 1555 1790 39403330 39403565 3.220000e-83 320.0
32 TraesCS1D01G059700 chr1A 85.149 303 37 4 4918 5219 39407229 39407524 3.240000e-78 303.0
33 TraesCS1D01G059700 chr1A 96.988 166 5 0 6381 6546 350754735 350754900 5.470000e-71 279.0
34 TraesCS1D01G059700 chr1A 83.730 252 39 2 4170 4420 39406259 39406509 3.340000e-58 237.0
35 TraesCS1D01G059700 chr1A 79.448 326 61 2 4352 4674 39406105 39406427 7.220000e-55 226.0
36 TraesCS1D01G059700 chr1A 98.230 113 2 0 5818 5930 39407772 39407884 1.570000e-46 198.0
37 TraesCS1D01G059700 chr1A 86.471 170 22 1 655 823 39363193 39363362 1.230000e-42 185.0
38 TraesCS1D01G059700 chr1A 94.215 121 7 0 5756 5876 39407881 39408001 1.230000e-42 185.0
39 TraesCS1D01G059700 chr1A 92.683 82 6 0 1789 1870 39403823 39403904 1.260000e-22 119.0
40 TraesCS1D01G059700 chr1A 91.045 67 6 0 4639 4705 39406686 39406752 2.750000e-14 91.6
41 TraesCS1D01G059700 chr1B 92.138 1590 108 10 2830 4407 59598506 59600090 0.000000e+00 2228.0
42 TraesCS1D01G059700 chr1B 90.423 1253 73 19 5147 6382 59601061 59602283 0.000000e+00 1605.0
43 TraesCS1D01G059700 chr1B 90.958 1106 74 10 1715 2798 59597294 59598395 0.000000e+00 1465.0
44 TraesCS1D01G059700 chr1B 94.968 616 24 5 6543 7157 59602281 59602890 0.000000e+00 959.0
45 TraesCS1D01G059700 chr1B 93.136 641 36 6 1 637 59595686 59596322 0.000000e+00 933.0
46 TraesCS1D01G059700 chr1B 86.864 845 60 18 655 1487 59596374 59597179 0.000000e+00 898.0
47 TraesCS1D01G059700 chr1B 87.224 407 36 9 1478 1870 59597217 59597621 3.940000e-122 449.0
48 TraesCS1D01G059700 chr1B 88.997 309 31 1 5156 5461 59600188 59600496 5.240000e-101 379.0
49 TraesCS1D01G059700 chr1B 86.970 330 29 7 1634 1950 59597293 59597621 6.830000e-95 359.0
50 TraesCS1D01G059700 chr1B 88.400 250 27 2 4918 5166 59600247 59600495 4.200000e-77 300.0
51 TraesCS1D01G059700 chr1B 96.552 116 4 0 5818 5933 59601666 59601781 7.330000e-45 193.0
52 TraesCS1D01G059700 chr4A 91.892 333 23 4 1833 2163 651851636 651851306 5.060000e-126 462.0
53 TraesCS1D01G059700 chr7B 91.592 333 24 4 1833 2163 421246135 421246465 2.350000e-124 457.0
54 TraesCS1D01G059700 chr7B 90.385 156 15 0 1555 1710 421246177 421246332 9.410000e-49 206.0
55 TraesCS1D01G059700 chr5A 91.592 333 23 5 1833 2163 131829085 131829414 8.460000e-124 455.0
56 TraesCS1D01G059700 chr6A 90.991 333 26 4 1833 2163 558113107 558112777 5.090000e-121 446.0
57 TraesCS1D01G059700 chr6A 96.000 175 6 1 6381 6555 115317413 115317240 4.230000e-72 283.0
58 TraesCS1D01G059700 chr3B 90.991 333 26 4 1833 2163 454347146 454347476 5.090000e-121 446.0
59 TraesCS1D01G059700 chr3B 91.411 326 25 3 1833 2156 454139874 454140198 1.830000e-120 444.0
60 TraesCS1D01G059700 chr6D 99.394 165 1 0 6381 6545 431000016 431000180 4.200000e-77 300.0
61 TraesCS1D01G059700 chr5D 98.802 167 2 0 6379 6545 42949726 42949560 1.510000e-76 298.0
62 TraesCS1D01G059700 chr5D 96.512 172 5 1 6380 6550 5112351 5112180 4.230000e-72 283.0
63 TraesCS1D01G059700 chr7A 97.619 168 4 0 6378 6545 709731063 709731230 9.080000e-74 289.0
64 TraesCS1D01G059700 chr3D 97.076 171 5 0 6381 6551 105119470 105119300 9.080000e-74 289.0
65 TraesCS1D01G059700 chr2D 97.619 168 4 0 6378 6545 609886788 609886955 9.080000e-74 289.0
66 TraesCS1D01G059700 chr4B 88.462 156 18 0 1555 1710 395552054 395552209 9.480000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G059700 chr1D 39942390 39949546 7156 False 13217.00000 13217 100.000000 1 7157 1 chr1D.!!$F1 7156
1 TraesCS1D01G059700 chr1D 39943944 39948322 4378 False 288.75000 560 89.724437 1555 5933 16 chr1D.!!$F2 4378
2 TraesCS1D01G059700 chr1A 39402316 39409084 6768 False 623.12381 2892 90.842429 643 7157 21 chr1A.!!$F3 6514
3 TraesCS1D01G059700 chr1B 59595686 59602890 7204 False 888.00000 2228 90.602727 1 7157 11 chr1B.!!$F1 7156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 632 0.162294 CGTTCGCCAGTTACCGTTTC 59.838 55.000 0.0 0.0 0.0 2.78 F
1235 1298 0.039165 GCGGTTTTTCTCTTGCAGGG 60.039 55.000 0.0 0.0 0.0 4.45 F
4247 4914 1.271597 ACCATCAAAGGTGACAGAGCC 60.272 52.381 0.0 0.0 41.3 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1541 1661 0.532573 CACAGGTACAGGCGACAGAT 59.467 55.0 0.0 0.0 0.0 2.90 R
4264 4931 2.237392 GAGGCAGTGGAGTTGATACCTT 59.763 50.0 0.0 0.0 0.0 3.50 R
6161 7658 0.179004 TTTTCCACCATGTCCTGCGT 60.179 50.0 0.0 0.0 0.0 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 164 3.115556 TGGCAACGCACTTGGTTC 58.884 55.556 0.00 0.00 42.51 3.62
192 193 2.409975 TGTTAGAGCAGTGTTAACCGC 58.590 47.619 2.48 3.45 0.00 5.68
246 247 9.342308 GATCAACATATTATCTTCACCCTTTGA 57.658 33.333 0.00 0.00 0.00 2.69
260 261 5.660864 TCACCCTTTGAAAACTCCTCATTTT 59.339 36.000 0.00 0.00 31.96 1.82
282 283 3.350219 ACAAACTCCACCATTAGCGAT 57.650 42.857 0.00 0.00 0.00 4.58
304 305 3.247006 TCTGACCATTTCTTAGCCGAC 57.753 47.619 0.00 0.00 0.00 4.79
305 306 2.832129 TCTGACCATTTCTTAGCCGACT 59.168 45.455 0.00 0.00 0.00 4.18
309 310 2.009774 CCATTTCTTAGCCGACTGTGG 58.990 52.381 0.00 0.00 0.00 4.17
359 363 8.635877 ATTGCGACTATTAAACAAAACAAACA 57.364 26.923 0.00 0.00 0.00 2.83
360 364 8.635877 TTGCGACTATTAAACAAAACAAACAT 57.364 26.923 0.00 0.00 0.00 2.71
377 381 7.712264 ACAAACATCCACATGTAATTTTGTG 57.288 32.000 16.31 8.22 42.89 3.33
418 422 4.796830 TCAGTTGTTGCTCGATCGTTATAC 59.203 41.667 15.94 10.10 0.00 1.47
460 464 4.392940 AGATTTTCTCACTTGTGGACCTG 58.607 43.478 0.64 0.00 0.00 4.00
541 545 7.961325 TCGATATTTTGCACATCATAGCTTA 57.039 32.000 0.00 0.00 0.00 3.09
543 547 9.002600 TCGATATTTTGCACATCATAGCTTAAT 57.997 29.630 0.00 0.00 0.00 1.40
619 624 1.329599 GAAAGTGAACGTTCGCCAGTT 59.670 47.619 32.22 24.43 38.43 3.16
627 632 0.162294 CGTTCGCCAGTTACCGTTTC 59.838 55.000 0.00 0.00 0.00 2.78
637 642 1.261354 GTTACCGTTTCCCGTCACAAC 59.739 52.381 0.00 0.00 33.66 3.32
638 643 0.249826 TACCGTTTCCCGTCACAACC 60.250 55.000 0.00 0.00 33.66 3.77
639 644 2.600475 CCGTTTCCCGTCACAACCG 61.600 63.158 0.00 0.00 33.66 4.44
641 646 1.430707 CGTTTCCCGTCACAACCGTT 61.431 55.000 0.00 0.00 0.00 4.44
642 647 0.305617 GTTTCCCGTCACAACCGTTC 59.694 55.000 0.00 0.00 0.00 3.95
643 648 0.814812 TTTCCCGTCACAACCGTTCC 60.815 55.000 0.00 0.00 0.00 3.62
644 649 2.974935 TTCCCGTCACAACCGTTCCG 62.975 60.000 0.00 0.00 0.00 4.30
645 650 2.279650 CCGTCACAACCGTTCCGT 60.280 61.111 0.00 0.00 0.00 4.69
646 651 1.884004 CCGTCACAACCGTTCCGTT 60.884 57.895 0.00 0.00 0.00 4.44
647 652 1.561250 CGTCACAACCGTTCCGTTC 59.439 57.895 0.00 0.00 0.00 3.95
648 653 1.824272 CGTCACAACCGTTCCGTTCC 61.824 60.000 0.00 0.00 0.00 3.62
649 654 0.531311 GTCACAACCGTTCCGTTCCT 60.531 55.000 0.00 0.00 0.00 3.36
713 752 0.323451 AGCCCCATCCGGAAAGAAAC 60.323 55.000 9.01 0.00 0.00 2.78
853 893 2.366266 CGCCATCCATTTCCATTTCCAT 59.634 45.455 0.00 0.00 0.00 3.41
854 894 3.181463 CGCCATCCATTTCCATTTCCATT 60.181 43.478 0.00 0.00 0.00 3.16
855 895 4.683942 CGCCATCCATTTCCATTTCCATTT 60.684 41.667 0.00 0.00 0.00 2.32
856 896 4.818005 GCCATCCATTTCCATTTCCATTTC 59.182 41.667 0.00 0.00 0.00 2.17
857 897 5.370679 CCATCCATTTCCATTTCCATTTCC 58.629 41.667 0.00 0.00 0.00 3.13
858 898 5.104444 CCATCCATTTCCATTTCCATTTCCA 60.104 40.000 0.00 0.00 0.00 3.53
859 899 5.419239 TCCATTTCCATTTCCATTTCCAC 57.581 39.130 0.00 0.00 0.00 4.02
860 900 4.224818 TCCATTTCCATTTCCATTTCCACC 59.775 41.667 0.00 0.00 0.00 4.61
1120 1175 1.475169 CCCAGGTCAGTGAGTCAGCA 61.475 60.000 0.00 0.00 0.00 4.41
1227 1290 2.127383 CGTGCCGCGGTTTTTCTC 60.127 61.111 28.70 8.52 36.85 2.87
1230 1293 0.660300 GTGCCGCGGTTTTTCTCTTG 60.660 55.000 28.70 0.00 0.00 3.02
1231 1294 1.729484 GCCGCGGTTTTTCTCTTGC 60.729 57.895 28.70 3.02 0.00 4.01
1233 1296 0.385974 CCGCGGTTTTTCTCTTGCAG 60.386 55.000 19.50 0.00 0.00 4.41
1235 1298 0.039165 GCGGTTTTTCTCTTGCAGGG 60.039 55.000 0.00 0.00 0.00 4.45
1237 1300 1.704641 GGTTTTTCTCTTGCAGGGGT 58.295 50.000 0.00 0.00 0.00 4.95
1373 1442 1.374947 CCCGAAGAAGACCAAGCCA 59.625 57.895 0.00 0.00 0.00 4.75
1488 1608 7.443302 AATCTCTATTGTTTCCTGATCTGGA 57.557 36.000 16.80 16.80 0.00 3.86
1519 1639 3.707102 AGTCCTACCAGCTCCTAACATTC 59.293 47.826 0.00 0.00 0.00 2.67
4247 4914 1.271597 ACCATCAAAGGTGACAGAGCC 60.272 52.381 0.00 0.00 41.30 4.70
4277 4944 5.599999 TCTCAAGCTAAGGTATCAACTCC 57.400 43.478 0.00 0.00 0.00 3.85
4278 4945 5.023452 TCTCAAGCTAAGGTATCAACTCCA 58.977 41.667 0.00 0.00 0.00 3.86
4279 4946 5.086104 TCAAGCTAAGGTATCAACTCCAC 57.914 43.478 0.00 0.00 0.00 4.02
4280 4947 4.777896 TCAAGCTAAGGTATCAACTCCACT 59.222 41.667 0.00 0.00 0.00 4.00
4281 4948 4.744795 AGCTAAGGTATCAACTCCACTG 57.255 45.455 0.00 0.00 0.00 3.66
4282 4949 3.118592 AGCTAAGGTATCAACTCCACTGC 60.119 47.826 0.00 0.00 0.00 4.40
4283 4950 2.789409 AAGGTATCAACTCCACTGCC 57.211 50.000 0.00 0.00 0.00 4.85
4284 4951 1.958288 AGGTATCAACTCCACTGCCT 58.042 50.000 0.00 0.00 0.00 4.75
4285 4952 1.834263 AGGTATCAACTCCACTGCCTC 59.166 52.381 0.00 0.00 0.00 4.70
4286 4953 1.834263 GGTATCAACTCCACTGCCTCT 59.166 52.381 0.00 0.00 0.00 3.69
4287 4954 2.159028 GGTATCAACTCCACTGCCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
4288 4955 1.649321 ATCAACTCCACTGCCTCTCA 58.351 50.000 0.00 0.00 0.00 3.27
4290 4957 0.972134 CAACTCCACTGCCTCTCAGA 59.028 55.000 0.00 0.00 45.72 3.27
4291 4958 1.067000 CAACTCCACTGCCTCTCAGAG 60.067 57.143 0.00 0.00 45.72 3.35
4292 4959 0.114168 ACTCCACTGCCTCTCAGAGT 59.886 55.000 0.00 0.00 45.72 3.24
4293 4960 1.265236 CTCCACTGCCTCTCAGAGTT 58.735 55.000 0.00 0.00 45.72 3.01
4294 4961 0.972134 TCCACTGCCTCTCAGAGTTG 59.028 55.000 0.00 0.00 45.72 3.16
4295 4962 0.673022 CCACTGCCTCTCAGAGTTGC 60.673 60.000 0.00 0.00 45.72 4.17
4296 4963 0.034476 CACTGCCTCTCAGAGTTGCA 59.966 55.000 13.61 13.61 45.72 4.08
4297 4964 0.034616 ACTGCCTCTCAGAGTTGCAC 59.965 55.000 11.18 0.00 45.72 4.57
4298 4965 0.034476 CTGCCTCTCAGAGTTGCACA 59.966 55.000 11.18 0.00 45.72 4.57
4299 4966 0.469494 TGCCTCTCAGAGTTGCACAA 59.531 50.000 11.18 0.00 0.00 3.33
4300 4967 1.134128 TGCCTCTCAGAGTTGCACAAA 60.134 47.619 11.18 0.00 0.00 2.83
4301 4968 1.265365 GCCTCTCAGAGTTGCACAAAC 59.735 52.381 0.00 0.00 39.24 2.93
4313 4980 4.739195 GTTGCACAAACTGGAGTAAAACA 58.261 39.130 0.00 0.00 35.75 2.83
4314 4981 5.164954 GTTGCACAAACTGGAGTAAAACAA 58.835 37.500 0.00 0.00 35.75 2.83
4315 4982 5.590530 TGCACAAACTGGAGTAAAACAAT 57.409 34.783 0.00 0.00 0.00 2.71
4316 4983 5.587289 TGCACAAACTGGAGTAAAACAATC 58.413 37.500 0.00 0.00 0.00 2.67
4317 4984 5.126222 TGCACAAACTGGAGTAAAACAATCA 59.874 36.000 0.00 0.00 0.00 2.57
4318 4985 6.039616 GCACAAACTGGAGTAAAACAATCAA 58.960 36.000 0.00 0.00 0.00 2.57
4319 4986 6.533367 GCACAAACTGGAGTAAAACAATCAAA 59.467 34.615 0.00 0.00 0.00 2.69
4320 4987 7.254084 GCACAAACTGGAGTAAAACAATCAAAG 60.254 37.037 0.00 0.00 0.00 2.77
4321 4988 7.222611 CACAAACTGGAGTAAAACAATCAAAGG 59.777 37.037 0.00 0.00 0.00 3.11
4322 4989 7.093509 ACAAACTGGAGTAAAACAATCAAAGGT 60.094 33.333 0.00 0.00 0.00 3.50
4323 4990 6.391227 ACTGGAGTAAAACAATCAAAGGTG 57.609 37.500 0.00 0.00 0.00 4.00
4324 4991 6.126409 ACTGGAGTAAAACAATCAAAGGTGA 58.874 36.000 0.00 0.00 38.41 4.02
4325 4992 6.039382 ACTGGAGTAAAACAATCAAAGGTGAC 59.961 38.462 0.00 0.00 36.31 3.67
4326 4993 5.300792 TGGAGTAAAACAATCAAAGGTGACC 59.699 40.000 0.00 0.00 36.31 4.02
4327 4994 5.432885 AGTAAAACAATCAAAGGTGACCG 57.567 39.130 0.00 0.00 36.31 4.79
4328 4995 5.127491 AGTAAAACAATCAAAGGTGACCGA 58.873 37.500 0.00 0.00 36.31 4.69
4329 4996 4.568152 AAAACAATCAAAGGTGACCGAG 57.432 40.909 0.00 0.00 36.31 4.63
4330 4997 1.523758 ACAATCAAAGGTGACCGAGC 58.476 50.000 0.00 0.00 36.31 5.03
4331 4998 0.804989 CAATCAAAGGTGACCGAGCC 59.195 55.000 0.00 0.00 36.31 4.70
4332 4999 0.693049 AATCAAAGGTGACCGAGCCT 59.307 50.000 0.00 0.00 36.31 4.58
4333 5000 0.036010 ATCAAAGGTGACCGAGCCTG 60.036 55.000 0.00 0.00 36.31 4.85
4334 5001 1.118965 TCAAAGGTGACCGAGCCTGA 61.119 55.000 0.00 0.00 34.90 3.86
4335 5002 0.250295 CAAAGGTGACCGAGCCTGAA 60.250 55.000 0.00 0.00 34.90 3.02
4336 5003 0.035458 AAAGGTGACCGAGCCTGAAG 59.965 55.000 0.00 0.00 34.90 3.02
4337 5004 2.435059 GGTGACCGAGCCTGAAGC 60.435 66.667 0.00 0.00 44.25 3.86
4348 5015 2.175878 GCCTGAAGCTTCTCAAGACA 57.824 50.000 26.09 4.85 38.99 3.41
4349 5016 2.498167 GCCTGAAGCTTCTCAAGACAA 58.502 47.619 26.09 3.44 38.99 3.18
4350 5017 2.483491 GCCTGAAGCTTCTCAAGACAAG 59.517 50.000 26.09 12.70 38.99 3.16
4351 5018 3.072944 CCTGAAGCTTCTCAAGACAAGG 58.927 50.000 26.09 17.44 0.00 3.61
4352 5019 2.483491 CTGAAGCTTCTCAAGACAAGGC 59.517 50.000 26.09 0.00 0.00 4.35
4353 5020 2.158769 TGAAGCTTCTCAAGACAAGGCA 60.159 45.455 26.09 0.00 0.00 4.75
4354 5021 2.875094 AGCTTCTCAAGACAAGGCAT 57.125 45.000 0.00 0.00 0.00 4.40
4355 5022 2.709213 AGCTTCTCAAGACAAGGCATC 58.291 47.619 0.00 0.00 0.00 3.91
4356 5023 2.039480 AGCTTCTCAAGACAAGGCATCA 59.961 45.455 0.00 0.00 0.00 3.07
4357 5024 2.816087 GCTTCTCAAGACAAGGCATCAA 59.184 45.455 0.00 0.00 0.00 2.57
4358 5025 3.365767 GCTTCTCAAGACAAGGCATCAAC 60.366 47.826 0.00 0.00 0.00 3.18
4359 5026 3.777106 TCTCAAGACAAGGCATCAACT 57.223 42.857 0.00 0.00 0.00 3.16
4360 5027 3.668447 TCTCAAGACAAGGCATCAACTC 58.332 45.455 0.00 0.00 0.00 3.01
4361 5028 2.746362 CTCAAGACAAGGCATCAACTCC 59.254 50.000 0.00 0.00 0.00 3.85
4362 5029 2.106338 TCAAGACAAGGCATCAACTCCA 59.894 45.455 0.00 0.00 0.00 3.86
4363 5030 2.191128 AGACAAGGCATCAACTCCAC 57.809 50.000 0.00 0.00 0.00 4.02
4364 5031 1.701847 AGACAAGGCATCAACTCCACT 59.298 47.619 0.00 0.00 0.00 4.00
4365 5032 1.808945 GACAAGGCATCAACTCCACTG 59.191 52.381 0.00 0.00 0.00 3.66
4366 5033 0.524862 CAAGGCATCAACTCCACTGC 59.475 55.000 0.00 0.00 0.00 4.40
4367 5034 3.595819 GGCATCAACTCCACTGCC 58.404 61.111 0.00 0.00 46.54 4.85
4368 5035 4.730487 GCATCAACTCCACTGCCT 57.270 55.556 0.00 0.00 0.00 4.75
4369 5036 2.475666 GCATCAACTCCACTGCCTC 58.524 57.895 0.00 0.00 0.00 4.70
4370 5037 0.035630 GCATCAACTCCACTGCCTCT 60.036 55.000 0.00 0.00 0.00 3.69
4371 5038 2.011046 GCATCAACTCCACTGCCTCTC 61.011 57.143 0.00 0.00 0.00 3.20
4372 5039 1.277273 CATCAACTCCACTGCCTCTCA 59.723 52.381 0.00 0.00 0.00 3.27
4374 5041 0.972134 CAACTCCACTGCCTCTCAGA 59.028 55.000 0.00 0.00 45.72 3.27
4375 5042 1.067000 CAACTCCACTGCCTCTCAGAG 60.067 57.143 0.00 0.00 45.72 3.35
4376 5043 0.114168 ACTCCACTGCCTCTCAGAGT 59.886 55.000 0.00 0.00 45.72 3.24
4377 5044 1.265236 CTCCACTGCCTCTCAGAGTT 58.735 55.000 0.00 0.00 45.72 3.01
4378 5045 0.972134 TCCACTGCCTCTCAGAGTTG 59.028 55.000 0.00 0.00 45.72 3.16
4379 5046 0.673022 CCACTGCCTCTCAGAGTTGC 60.673 60.000 0.00 0.00 45.72 4.17
4380 5047 0.034476 CACTGCCTCTCAGAGTTGCA 59.966 55.000 13.61 13.61 45.72 4.08
4381 5048 0.034616 ACTGCCTCTCAGAGTTGCAC 59.965 55.000 11.18 0.00 45.72 4.57
4382 5049 0.034476 CTGCCTCTCAGAGTTGCACA 59.966 55.000 11.18 0.00 45.72 4.57
4383 5050 0.469494 TGCCTCTCAGAGTTGCACAA 59.531 50.000 11.18 0.00 0.00 3.33
4384 5051 1.134128 TGCCTCTCAGAGTTGCACAAA 60.134 47.619 11.18 0.00 0.00 2.83
4385 5052 1.265365 GCCTCTCAGAGTTGCACAAAC 59.735 52.381 0.00 0.00 39.24 2.93
4397 5064 5.696260 GTTGCACAAACTGAAGTAAAACC 57.304 39.130 0.00 0.00 35.75 3.27
4398 5065 5.164954 GTTGCACAAACTGAAGTAAAACCA 58.835 37.500 0.00 0.00 35.75 3.67
4399 5066 5.590530 TGCACAAACTGAAGTAAAACCAT 57.409 34.783 0.00 0.00 0.00 3.55
4400 5067 5.587289 TGCACAAACTGAAGTAAAACCATC 58.413 37.500 0.00 0.00 0.00 3.51
4401 5068 5.126222 TGCACAAACTGAAGTAAAACCATCA 59.874 36.000 0.00 0.00 0.00 3.07
4402 5069 5.687285 GCACAAACTGAAGTAAAACCATCAG 59.313 40.000 8.22 8.22 43.79 2.90
4403 5070 6.459573 GCACAAACTGAAGTAAAACCATCAGA 60.460 38.462 14.04 0.00 41.38 3.27
4404 5071 7.134815 CACAAACTGAAGTAAAACCATCAGAG 58.865 38.462 14.04 8.13 41.38 3.35
4405 5072 6.263168 ACAAACTGAAGTAAAACCATCAGAGG 59.737 38.462 14.04 7.67 41.38 3.69
4406 5073 5.568620 ACTGAAGTAAAACCATCAGAGGT 57.431 39.130 14.04 0.00 45.91 3.85
4407 5074 5.308825 ACTGAAGTAAAACCATCAGAGGTG 58.691 41.667 14.04 0.00 42.25 4.00
4408 5075 5.071788 ACTGAAGTAAAACCATCAGAGGTGA 59.928 40.000 14.04 0.00 42.25 4.02
4409 5076 5.305585 TGAAGTAAAACCATCAGAGGTGAC 58.694 41.667 0.00 0.00 42.25 3.67
4410 5077 4.974645 AGTAAAACCATCAGAGGTGACA 57.025 40.909 0.00 0.00 42.25 3.58
4411 5078 4.899502 AGTAAAACCATCAGAGGTGACAG 58.100 43.478 0.00 0.00 42.25 3.51
4412 5079 4.593206 AGTAAAACCATCAGAGGTGACAGA 59.407 41.667 0.00 0.00 42.25 3.41
4413 5080 3.692257 AAACCATCAGAGGTGACAGAG 57.308 47.619 0.00 0.00 42.25 3.35
4414 5081 0.901124 ACCATCAGAGGTGACAGAGC 59.099 55.000 0.00 0.00 41.30 4.09
4415 5082 0.900421 CCATCAGAGGTGACAGAGCA 59.100 55.000 0.00 0.00 34.75 4.26
4416 5083 1.485480 CCATCAGAGGTGACAGAGCAT 59.515 52.381 0.00 0.00 34.75 3.79
4417 5084 2.552031 CATCAGAGGTGACAGAGCATG 58.448 52.381 0.00 0.00 34.75 4.06
4418 5085 1.928868 TCAGAGGTGACAGAGCATGA 58.071 50.000 0.00 0.00 0.00 3.07
4419 5086 1.547820 TCAGAGGTGACAGAGCATGAC 59.452 52.381 0.00 0.00 0.00 3.06
4420 5087 0.529833 AGAGGTGACAGAGCATGACG 59.470 55.000 0.00 0.00 0.00 4.35
4421 5088 1.079543 AGGTGACAGAGCATGACGC 60.080 57.895 0.00 0.00 42.91 5.19
5934 7429 0.968901 ACGCGACTCCATTGACCCTA 60.969 55.000 15.93 0.00 0.00 3.53
5972 7467 2.636830 CTCCATTTCTCTTGGCGATGT 58.363 47.619 0.00 0.00 34.06 3.06
6035 7530 2.279741 GAATCGTATGCTGCTGGTTGA 58.720 47.619 0.00 0.00 0.00 3.18
6186 7683 1.613437 GGACATGGTGGAAAACTGTGG 59.387 52.381 0.00 0.00 0.00 4.17
6198 7695 5.298276 TGGAAAACTGTGGTATTCTGTTGTC 59.702 40.000 0.00 0.00 33.34 3.18
6199 7696 5.278315 GGAAAACTGTGGTATTCTGTTGTCC 60.278 44.000 8.38 8.38 40.86 4.02
6218 7715 1.548582 CCCCAAAGCACTTGATCCTGT 60.549 52.381 0.38 0.00 37.17 4.00
6266 7763 9.807386 AGTAAAAGCGTATAAATATGATTTCGC 57.193 29.630 6.03 7.87 37.01 4.70
6379 7899 8.820933 AGTATTGATCAATCGTCACTTGTAATG 58.179 33.333 23.95 0.00 32.50 1.90
6380 7900 7.615582 ATTGATCAATCGTCACTTGTAATGT 57.384 32.000 15.36 0.00 0.00 2.71
6381 7901 8.716646 ATTGATCAATCGTCACTTGTAATGTA 57.283 30.769 15.36 0.00 0.00 2.29
6382 7902 7.520119 TGATCAATCGTCACTTGTAATGTAC 57.480 36.000 0.00 0.00 0.00 2.90
6383 7903 6.533723 TGATCAATCGTCACTTGTAATGTACC 59.466 38.462 0.00 0.00 0.00 3.34
6384 7904 5.172934 TCAATCGTCACTTGTAATGTACCC 58.827 41.667 0.00 0.00 0.00 3.69
6385 7905 3.598019 TCGTCACTTGTAATGTACCCC 57.402 47.619 0.00 0.00 0.00 4.95
6386 7906 2.234414 TCGTCACTTGTAATGTACCCCC 59.766 50.000 0.00 0.00 0.00 5.40
6387 7907 2.235402 CGTCACTTGTAATGTACCCCCT 59.765 50.000 0.00 0.00 0.00 4.79
6388 7908 3.677976 CGTCACTTGTAATGTACCCCCTC 60.678 52.174 0.00 0.00 0.00 4.30
6389 7909 2.841881 TCACTTGTAATGTACCCCCTCC 59.158 50.000 0.00 0.00 0.00 4.30
6390 7910 1.835531 ACTTGTAATGTACCCCCTCCG 59.164 52.381 0.00 0.00 0.00 4.63
6391 7911 1.835531 CTTGTAATGTACCCCCTCCGT 59.164 52.381 0.00 0.00 0.00 4.69
6392 7912 1.955451 TGTAATGTACCCCCTCCGTT 58.045 50.000 0.00 0.00 0.00 4.44
6393 7913 1.832998 TGTAATGTACCCCCTCCGTTC 59.167 52.381 0.00 0.00 0.00 3.95
6394 7914 1.139654 GTAATGTACCCCCTCCGTTCC 59.860 57.143 0.00 0.00 0.00 3.62
6395 7915 1.276859 AATGTACCCCCTCCGTTCCC 61.277 60.000 0.00 0.00 0.00 3.97
6396 7916 2.284847 GTACCCCCTCCGTTCCCA 60.285 66.667 0.00 0.00 0.00 4.37
6397 7917 1.919816 GTACCCCCTCCGTTCCCAA 60.920 63.158 0.00 0.00 0.00 4.12
6398 7918 1.151855 TACCCCCTCCGTTCCCAAA 60.152 57.895 0.00 0.00 0.00 3.28
6399 7919 0.550638 TACCCCCTCCGTTCCCAAAT 60.551 55.000 0.00 0.00 0.00 2.32
6400 7920 0.550638 ACCCCCTCCGTTCCCAAATA 60.551 55.000 0.00 0.00 0.00 1.40
6401 7921 0.850784 CCCCCTCCGTTCCCAAATAT 59.149 55.000 0.00 0.00 0.00 1.28
6402 7922 2.059490 CCCCCTCCGTTCCCAAATATA 58.941 52.381 0.00 0.00 0.00 0.86
6403 7923 2.444010 CCCCCTCCGTTCCCAAATATAA 59.556 50.000 0.00 0.00 0.00 0.98
6404 7924 3.497942 CCCCCTCCGTTCCCAAATATAAG 60.498 52.174 0.00 0.00 0.00 1.73
6405 7925 3.137728 CCCCTCCGTTCCCAAATATAAGT 59.862 47.826 0.00 0.00 0.00 2.24
6406 7926 4.386711 CCCTCCGTTCCCAAATATAAGTC 58.613 47.826 0.00 0.00 0.00 3.01
6407 7927 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
6408 7928 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
6409 7929 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
6410 7930 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
6411 7931 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
6412 7932 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
6413 7933 8.202137 TCCGTTCCCAAATATAAGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
6414 7934 8.202137 CCGTTCCCAAATATAAGTCTTTCTAGA 58.798 37.037 0.00 0.00 0.00 2.43
6415 7935 9.250624 CGTTCCCAAATATAAGTCTTTCTAGAG 57.749 37.037 0.00 0.00 0.00 2.43
6426 7946 9.883142 ATAAGTCTTTCTAGAGATTCCAACAAG 57.117 33.333 0.00 0.00 0.00 3.16
6427 7947 7.309770 AGTCTTTCTAGAGATTCCAACAAGT 57.690 36.000 0.00 0.00 0.00 3.16
6428 7948 7.158021 AGTCTTTCTAGAGATTCCAACAAGTG 58.842 38.462 0.00 0.00 0.00 3.16
6429 7949 7.015682 AGTCTTTCTAGAGATTCCAACAAGTGA 59.984 37.037 0.00 0.00 0.00 3.41
6430 7950 7.117092 GTCTTTCTAGAGATTCCAACAAGTGAC 59.883 40.741 0.00 0.00 0.00 3.67
6431 7951 6.672266 TTCTAGAGATTCCAACAAGTGACT 57.328 37.500 0.00 0.00 0.00 3.41
6432 7952 7.776618 TTCTAGAGATTCCAACAAGTGACTA 57.223 36.000 0.00 0.00 0.00 2.59
6433 7953 7.159322 TCTAGAGATTCCAACAAGTGACTAC 57.841 40.000 0.00 0.00 0.00 2.73
6434 7954 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
6435 7955 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
6436 7956 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
6437 7957 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
6438 7958 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
6439 7959 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
6440 7960 3.827876 TCCAACAAGTGACTACATACGGA 59.172 43.478 0.00 0.00 0.00 4.69
6441 7961 4.082408 TCCAACAAGTGACTACATACGGAG 60.082 45.833 0.00 0.00 0.00 4.63
6442 7962 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
6443 7963 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
6444 7964 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
6445 7965 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
6446 7966 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
6447 7967 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
6448 7968 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
6449 7969 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
6450 7970 5.350365 GTGACTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
6451 7971 6.037172 GTGACTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
6452 7972 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
6453 7973 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
6454 7974 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
6455 7975 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
6456 7976 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
6457 7977 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
6458 7978 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
6459 7979 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
6460 7980 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
6461 7981 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
6462 7982 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
6463 7983 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
6464 7984 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
6465 7985 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
6466 7986 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
6501 8021 7.905604 CATACATCCGTATGTTGTATTCCAT 57.094 36.000 0.00 0.00 46.70 3.41
6502 8022 8.322906 CATACATCCGTATGTTGTATTCCATT 57.677 34.615 0.00 0.00 46.70 3.16
6503 8023 8.783093 CATACATCCGTATGTTGTATTCCATTT 58.217 33.333 0.00 0.00 46.70 2.32
6504 8024 7.026631 ACATCCGTATGTTGTATTCCATTTG 57.973 36.000 0.00 0.00 44.07 2.32
6505 8025 6.826231 ACATCCGTATGTTGTATTCCATTTGA 59.174 34.615 0.00 0.00 44.07 2.69
6506 8026 7.338196 ACATCCGTATGTTGTATTCCATTTGAA 59.662 33.333 0.00 0.00 44.07 2.69
6507 8027 7.689446 TCCGTATGTTGTATTCCATTTGAAA 57.311 32.000 0.00 0.00 36.33 2.69
6508 8028 8.287439 TCCGTATGTTGTATTCCATTTGAAAT 57.713 30.769 0.00 0.00 36.33 2.17
6509 8029 8.187480 TCCGTATGTTGTATTCCATTTGAAATG 58.813 33.333 10.84 10.84 36.33 2.32
6510 8030 7.973388 CCGTATGTTGTATTCCATTTGAAATGT 59.027 33.333 15.93 1.43 36.33 2.71
6511 8031 9.009327 CGTATGTTGTATTCCATTTGAAATGTC 57.991 33.333 15.93 3.21 36.33 3.06
6539 8059 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
6540 8060 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
6541 8061 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
6694 8214 0.739813 GGGTTGGTCGTCTTCATCGG 60.740 60.000 0.00 0.00 0.00 4.18
6734 8254 2.162208 CCGGAACTTGGATCAACACATG 59.838 50.000 0.00 0.00 0.00 3.21
6784 8304 1.696336 TCAGCATATCTTCTGGAGGCC 59.304 52.381 0.00 0.00 0.00 5.19
6997 8546 0.172578 TGAGCATCACCGGTAAGTCG 59.827 55.000 6.87 0.00 42.56 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 7.523052 GCCACCACACATTTAGACAAAATTAGA 60.523 37.037 0.00 0.00 35.54 2.10
124 125 6.586082 GCCACCACACATTTAGACAAAATTAG 59.414 38.462 0.00 0.00 35.54 1.73
126 127 5.163364 TGCCACCACACATTTAGACAAAATT 60.163 36.000 0.00 0.00 35.54 1.82
127 128 4.343526 TGCCACCACACATTTAGACAAAAT 59.656 37.500 0.00 0.00 38.36 1.82
132 133 2.350388 CGTTGCCACCACACATTTAGAC 60.350 50.000 0.00 0.00 0.00 2.59
146 147 2.485795 GGAACCAAGTGCGTTGCCA 61.486 57.895 0.00 0.00 34.45 4.92
157 158 5.012664 TGCTCTAACAACTAGATGGAACCAA 59.987 40.000 4.89 0.00 36.02 3.67
163 164 5.078411 ACACTGCTCTAACAACTAGATGG 57.922 43.478 4.89 0.00 36.02 3.51
212 213 9.889128 TGAAGATAATATGTTGATCTTGTCACA 57.111 29.630 1.27 0.00 39.46 3.58
214 215 9.330063 GGTGAAGATAATATGTTGATCTTGTCA 57.670 33.333 1.27 0.00 39.46 3.58
215 216 8.778358 GGGTGAAGATAATATGTTGATCTTGTC 58.222 37.037 1.27 0.00 39.46 3.18
216 217 8.497745 AGGGTGAAGATAATATGTTGATCTTGT 58.502 33.333 1.27 0.00 39.46 3.16
217 218 8.915057 AGGGTGAAGATAATATGTTGATCTTG 57.085 34.615 1.27 0.00 39.46 3.02
220 221 9.342308 TCAAAGGGTGAAGATAATATGTTGATC 57.658 33.333 0.00 0.00 31.51 2.92
246 247 7.979537 GTGGAGTTTGTTAAAATGAGGAGTTTT 59.020 33.333 0.00 0.00 33.67 2.43
260 261 4.274602 TCGCTAATGGTGGAGTTTGTTA 57.725 40.909 0.00 0.00 0.00 2.41
282 283 4.649674 AGTCGGCTAAGAAATGGTCAGATA 59.350 41.667 0.00 0.00 0.00 1.98
304 305 3.256383 TGAGCACCATTGAAATTCCACAG 59.744 43.478 0.00 0.00 0.00 3.66
305 306 3.229293 TGAGCACCATTGAAATTCCACA 58.771 40.909 0.00 0.00 0.00 4.17
309 310 9.754382 ATAACATTATGAGCACCATTGAAATTC 57.246 29.630 0.00 0.00 36.71 2.17
359 363 7.466746 AGTTAGCACAAAATTACATGTGGAT 57.533 32.000 9.11 0.00 45.46 3.41
360 364 6.892658 AGTTAGCACAAAATTACATGTGGA 57.107 33.333 9.11 0.00 45.46 4.02
377 381 8.051901 ACAACTGAAACCCATATAAAGTTAGC 57.948 34.615 0.00 0.00 0.00 3.09
389 393 1.021202 CGAGCAACAACTGAAACCCA 58.979 50.000 0.00 0.00 0.00 4.51
454 458 2.369870 CGTATCAACGTGCAGGTCC 58.630 57.895 13.21 0.00 44.21 4.46
502 506 9.000018 GCAAAATATCGATCACAAAGAGTAAAC 58.000 33.333 0.00 0.00 0.00 2.01
639 644 1.615165 GGAGGGGAGAGGAACGGAAC 61.615 65.000 0.00 0.00 0.00 3.62
641 646 2.363361 GGAGGGGAGAGGAACGGA 59.637 66.667 0.00 0.00 0.00 4.69
642 647 2.764547 GGGAGGGGAGAGGAACGG 60.765 72.222 0.00 0.00 0.00 4.44
643 648 1.198759 TTTGGGAGGGGAGAGGAACG 61.199 60.000 0.00 0.00 0.00 3.95
644 649 1.299939 ATTTGGGAGGGGAGAGGAAC 58.700 55.000 0.00 0.00 0.00 3.62
645 650 2.074922 AATTTGGGAGGGGAGAGGAA 57.925 50.000 0.00 0.00 0.00 3.36
646 651 1.923148 GAAATTTGGGAGGGGAGAGGA 59.077 52.381 0.00 0.00 0.00 3.71
647 652 1.640670 TGAAATTTGGGAGGGGAGAGG 59.359 52.381 0.00 0.00 0.00 3.69
648 653 3.456380 TTGAAATTTGGGAGGGGAGAG 57.544 47.619 0.00 0.00 0.00 3.20
649 654 3.506398 GTTTGAAATTTGGGAGGGGAGA 58.494 45.455 0.00 0.00 0.00 3.71
882 922 1.442886 TTGGGGGCTGAGATTTGGGT 61.443 55.000 0.00 0.00 0.00 4.51
1212 1275 1.652012 CAAGAGAAAAACCGCGGCA 59.348 52.632 28.58 0.00 0.00 5.69
1215 1278 0.385974 CCTGCAAGAGAAAAACCGCG 60.386 55.000 0.00 0.00 34.07 6.46
1225 1288 1.073199 ACCGAAACCCCTGCAAGAG 59.927 57.895 0.00 0.00 34.07 2.85
1226 1289 1.228124 CACCGAAACCCCTGCAAGA 60.228 57.895 0.00 0.00 34.07 3.02
1227 1290 2.268076 CCACCGAAACCCCTGCAAG 61.268 63.158 0.00 0.00 0.00 4.01
1230 1293 2.983592 CACCACCGAAACCCCTGC 60.984 66.667 0.00 0.00 0.00 4.85
1231 1294 2.282180 CCACCACCGAAACCCCTG 60.282 66.667 0.00 0.00 0.00 4.45
1266 1332 1.321074 GGAGGAGATCCGACGGTGTT 61.321 60.000 14.79 0.00 38.67 3.32
1267 1333 1.753463 GGAGGAGATCCGACGGTGT 60.753 63.158 14.79 3.83 38.67 4.16
1346 1415 3.589654 CTTCTTCGGGGACTGCGCA 62.590 63.158 10.98 10.98 32.53 6.09
1373 1442 4.265056 AGGTTGACGCCGCCCTTT 62.265 61.111 0.00 0.00 0.00 3.11
1488 1608 1.486726 GCTGGTAGGACTGGTAGCAAT 59.513 52.381 0.00 0.00 0.00 3.56
1541 1661 0.532573 CACAGGTACAGGCGACAGAT 59.467 55.000 0.00 0.00 0.00 2.90
4261 4928 3.198872 GCAGTGGAGTTGATACCTTAGC 58.801 50.000 0.00 0.00 0.00 3.09
4262 4929 3.452627 AGGCAGTGGAGTTGATACCTTAG 59.547 47.826 0.00 0.00 0.00 2.18
4263 4930 3.450904 AGGCAGTGGAGTTGATACCTTA 58.549 45.455 0.00 0.00 0.00 2.69
4264 4931 2.237392 GAGGCAGTGGAGTTGATACCTT 59.763 50.000 0.00 0.00 0.00 3.50
4265 4932 1.834263 GAGGCAGTGGAGTTGATACCT 59.166 52.381 0.00 0.00 0.00 3.08
4266 4933 1.834263 AGAGGCAGTGGAGTTGATACC 59.166 52.381 0.00 0.00 0.00 2.73
4267 4934 2.497675 TGAGAGGCAGTGGAGTTGATAC 59.502 50.000 0.00 0.00 0.00 2.24
4268 4935 2.762887 CTGAGAGGCAGTGGAGTTGATA 59.237 50.000 0.00 0.00 39.85 2.15
4269 4936 1.554160 CTGAGAGGCAGTGGAGTTGAT 59.446 52.381 0.00 0.00 39.85 2.57
4270 4937 0.972134 CTGAGAGGCAGTGGAGTTGA 59.028 55.000 0.00 0.00 39.85 3.18
4271 4938 0.972134 TCTGAGAGGCAGTGGAGTTG 59.028 55.000 0.00 0.00 45.14 3.16
4272 4939 1.265236 CTCTGAGAGGCAGTGGAGTT 58.735 55.000 0.36 0.00 45.14 3.01
4273 4940 0.114168 ACTCTGAGAGGCAGTGGAGT 59.886 55.000 14.83 0.00 45.14 3.85
4274 4941 1.067000 CAACTCTGAGAGGCAGTGGAG 60.067 57.143 14.83 0.00 45.14 3.86
4275 4942 0.972134 CAACTCTGAGAGGCAGTGGA 59.028 55.000 14.83 0.00 45.14 4.02
4276 4943 0.673022 GCAACTCTGAGAGGCAGTGG 60.673 60.000 14.83 0.00 45.14 4.00
4277 4944 0.034476 TGCAACTCTGAGAGGCAGTG 59.966 55.000 14.83 7.30 45.14 3.66
4278 4945 0.034616 GTGCAACTCTGAGAGGCAGT 59.965 55.000 21.67 0.00 45.14 4.40
4279 4946 0.034476 TGTGCAACTCTGAGAGGCAG 59.966 55.000 21.67 4.17 39.67 4.85
4280 4947 0.469494 TTGTGCAACTCTGAGAGGCA 59.531 50.000 14.83 18.80 38.04 4.75
4281 4948 1.265365 GTTTGTGCAACTCTGAGAGGC 59.735 52.381 14.83 14.04 38.04 4.70
4282 4949 2.547211 CAGTTTGTGCAACTCTGAGAGG 59.453 50.000 14.83 3.90 44.60 3.69
4283 4950 2.547211 CCAGTTTGTGCAACTCTGAGAG 59.453 50.000 12.44 8.15 44.60 3.20
4284 4951 2.170397 TCCAGTTTGTGCAACTCTGAGA 59.830 45.455 12.44 8.95 44.60 3.27
4285 4952 2.547211 CTCCAGTTTGTGCAACTCTGAG 59.453 50.000 2.45 2.45 44.60 3.35
4286 4953 2.092968 ACTCCAGTTTGTGCAACTCTGA 60.093 45.455 13.76 0.27 44.60 3.27
4287 4954 2.292267 ACTCCAGTTTGTGCAACTCTG 58.708 47.619 0.00 0.00 44.60 3.35
4288 4955 2.717639 ACTCCAGTTTGTGCAACTCT 57.282 45.000 0.00 0.00 44.60 3.24
4289 4956 4.893424 TTTACTCCAGTTTGTGCAACTC 57.107 40.909 0.00 0.00 44.60 3.01
4291 4958 4.739195 TGTTTTACTCCAGTTTGTGCAAC 58.261 39.130 0.00 0.00 35.32 4.17
4292 4959 5.392767 TTGTTTTACTCCAGTTTGTGCAA 57.607 34.783 0.00 0.00 0.00 4.08
4293 4960 5.126222 TGATTGTTTTACTCCAGTTTGTGCA 59.874 36.000 0.00 0.00 0.00 4.57
4294 4961 5.587289 TGATTGTTTTACTCCAGTTTGTGC 58.413 37.500 0.00 0.00 0.00 4.57
4295 4962 7.222611 CCTTTGATTGTTTTACTCCAGTTTGTG 59.777 37.037 0.00 0.00 0.00 3.33
4296 4963 7.093509 ACCTTTGATTGTTTTACTCCAGTTTGT 60.094 33.333 0.00 0.00 0.00 2.83
4297 4964 7.222611 CACCTTTGATTGTTTTACTCCAGTTTG 59.777 37.037 0.00 0.00 0.00 2.93
4298 4965 7.123547 TCACCTTTGATTGTTTTACTCCAGTTT 59.876 33.333 0.00 0.00 0.00 2.66
4299 4966 6.605594 TCACCTTTGATTGTTTTACTCCAGTT 59.394 34.615 0.00 0.00 0.00 3.16
4300 4967 6.039382 GTCACCTTTGATTGTTTTACTCCAGT 59.961 38.462 0.00 0.00 33.11 4.00
4301 4968 6.438763 GTCACCTTTGATTGTTTTACTCCAG 58.561 40.000 0.00 0.00 33.11 3.86
4302 4969 5.300792 GGTCACCTTTGATTGTTTTACTCCA 59.699 40.000 0.00 0.00 33.11 3.86
4303 4970 5.562113 CGGTCACCTTTGATTGTTTTACTCC 60.562 44.000 0.00 0.00 33.11 3.85
4304 4971 5.237779 TCGGTCACCTTTGATTGTTTTACTC 59.762 40.000 0.00 0.00 33.11 2.59
4305 4972 5.127491 TCGGTCACCTTTGATTGTTTTACT 58.873 37.500 0.00 0.00 33.11 2.24
4306 4973 5.427036 TCGGTCACCTTTGATTGTTTTAC 57.573 39.130 0.00 0.00 33.11 2.01
4307 4974 4.023536 GCTCGGTCACCTTTGATTGTTTTA 60.024 41.667 0.00 0.00 33.11 1.52
4308 4975 3.243401 GCTCGGTCACCTTTGATTGTTTT 60.243 43.478 0.00 0.00 33.11 2.43
4309 4976 2.293399 GCTCGGTCACCTTTGATTGTTT 59.707 45.455 0.00 0.00 33.11 2.83
4310 4977 1.880027 GCTCGGTCACCTTTGATTGTT 59.120 47.619 0.00 0.00 33.11 2.83
4311 4978 1.523758 GCTCGGTCACCTTTGATTGT 58.476 50.000 0.00 0.00 33.11 2.71
4312 4979 0.804989 GGCTCGGTCACCTTTGATTG 59.195 55.000 0.00 0.00 33.11 2.67
4313 4980 0.693049 AGGCTCGGTCACCTTTGATT 59.307 50.000 0.00 0.00 33.11 2.57
4314 4981 0.036010 CAGGCTCGGTCACCTTTGAT 60.036 55.000 0.00 0.00 32.56 2.57
4315 4982 1.118965 TCAGGCTCGGTCACCTTTGA 61.119 55.000 0.00 0.00 32.56 2.69
4316 4983 0.250295 TTCAGGCTCGGTCACCTTTG 60.250 55.000 0.00 0.00 32.56 2.77
4317 4984 0.035458 CTTCAGGCTCGGTCACCTTT 59.965 55.000 0.00 0.00 32.56 3.11
4318 4985 1.674057 CTTCAGGCTCGGTCACCTT 59.326 57.895 0.00 0.00 32.56 3.50
4319 4986 2.948720 GCTTCAGGCTCGGTCACCT 61.949 63.158 0.00 0.00 38.06 4.00
4320 4987 2.435059 GCTTCAGGCTCGGTCACC 60.435 66.667 0.00 0.00 38.06 4.02
4329 4996 2.175878 TGTCTTGAGAAGCTTCAGGC 57.824 50.000 27.57 17.95 42.19 4.85
4330 4997 3.072944 CCTTGTCTTGAGAAGCTTCAGG 58.927 50.000 27.57 18.05 0.00 3.86
4331 4998 2.483491 GCCTTGTCTTGAGAAGCTTCAG 59.517 50.000 27.57 16.41 0.00 3.02
4332 4999 2.158769 TGCCTTGTCTTGAGAAGCTTCA 60.159 45.455 27.57 6.62 0.00 3.02
4333 5000 2.498167 TGCCTTGTCTTGAGAAGCTTC 58.502 47.619 19.11 19.11 0.00 3.86
4334 5001 2.645838 TGCCTTGTCTTGAGAAGCTT 57.354 45.000 0.00 0.00 0.00 3.74
4335 5002 2.039480 TGATGCCTTGTCTTGAGAAGCT 59.961 45.455 2.44 0.00 0.00 3.74
4336 5003 2.430465 TGATGCCTTGTCTTGAGAAGC 58.570 47.619 2.44 0.24 0.00 3.86
4337 5004 4.070716 AGTTGATGCCTTGTCTTGAGAAG 58.929 43.478 1.12 1.12 0.00 2.85
4338 5005 4.067896 GAGTTGATGCCTTGTCTTGAGAA 58.932 43.478 0.00 0.00 0.00 2.87
4339 5006 3.557898 GGAGTTGATGCCTTGTCTTGAGA 60.558 47.826 0.00 0.00 0.00 3.27
4340 5007 2.746362 GGAGTTGATGCCTTGTCTTGAG 59.254 50.000 0.00 0.00 0.00 3.02
4341 5008 2.106338 TGGAGTTGATGCCTTGTCTTGA 59.894 45.455 0.00 0.00 0.00 3.02
4342 5009 2.227388 GTGGAGTTGATGCCTTGTCTTG 59.773 50.000 0.00 0.00 0.00 3.02
4343 5010 2.107204 AGTGGAGTTGATGCCTTGTCTT 59.893 45.455 0.00 0.00 0.00 3.01
4344 5011 1.701847 AGTGGAGTTGATGCCTTGTCT 59.298 47.619 0.00 0.00 0.00 3.41
4345 5012 1.808945 CAGTGGAGTTGATGCCTTGTC 59.191 52.381 0.00 0.00 0.00 3.18
4346 5013 1.901591 CAGTGGAGTTGATGCCTTGT 58.098 50.000 0.00 0.00 0.00 3.16
4347 5014 0.524862 GCAGTGGAGTTGATGCCTTG 59.475 55.000 0.00 0.00 32.49 3.61
4348 5015 2.952714 GCAGTGGAGTTGATGCCTT 58.047 52.632 0.00 0.00 32.49 4.35
4349 5016 4.730487 GCAGTGGAGTTGATGCCT 57.270 55.556 0.00 0.00 32.49 4.75
4351 5018 0.035630 AGAGGCAGTGGAGTTGATGC 60.036 55.000 0.00 0.00 37.95 3.91
4352 5019 1.277273 TGAGAGGCAGTGGAGTTGATG 59.723 52.381 0.00 0.00 0.00 3.07
4353 5020 1.554160 CTGAGAGGCAGTGGAGTTGAT 59.446 52.381 0.00 0.00 39.85 2.57
4354 5021 0.972134 CTGAGAGGCAGTGGAGTTGA 59.028 55.000 0.00 0.00 39.85 3.18
4355 5022 0.972134 TCTGAGAGGCAGTGGAGTTG 59.028 55.000 0.00 0.00 45.14 3.16
4356 5023 1.265236 CTCTGAGAGGCAGTGGAGTT 58.735 55.000 0.36 0.00 45.14 3.01
4357 5024 0.114168 ACTCTGAGAGGCAGTGGAGT 59.886 55.000 14.83 0.00 45.14 3.85
4358 5025 1.067000 CAACTCTGAGAGGCAGTGGAG 60.067 57.143 14.83 0.00 45.14 3.86
4359 5026 0.972134 CAACTCTGAGAGGCAGTGGA 59.028 55.000 14.83 0.00 45.14 4.02
4360 5027 0.673022 GCAACTCTGAGAGGCAGTGG 60.673 60.000 14.83 0.00 45.14 4.00
4361 5028 0.034476 TGCAACTCTGAGAGGCAGTG 59.966 55.000 14.83 7.30 45.14 3.66
4362 5029 0.034616 GTGCAACTCTGAGAGGCAGT 59.965 55.000 21.67 0.00 45.14 4.40
4363 5030 0.034476 TGTGCAACTCTGAGAGGCAG 59.966 55.000 21.67 4.17 39.67 4.85
4364 5031 0.469494 TTGTGCAACTCTGAGAGGCA 59.531 50.000 14.83 18.80 38.04 4.75
4365 5032 1.265365 GTTTGTGCAACTCTGAGAGGC 59.735 52.381 14.83 14.04 38.04 4.70
4366 5033 2.547211 CAGTTTGTGCAACTCTGAGAGG 59.453 50.000 14.83 3.90 44.60 3.69
4367 5034 3.461061 TCAGTTTGTGCAACTCTGAGAG 58.539 45.455 12.44 8.15 44.60 3.20
4368 5035 3.541996 TCAGTTTGTGCAACTCTGAGA 57.458 42.857 12.44 0.00 44.60 3.27
4369 5036 3.624861 ACTTCAGTTTGTGCAACTCTGAG 59.375 43.478 2.45 2.45 44.60 3.35
4370 5037 3.609853 ACTTCAGTTTGTGCAACTCTGA 58.390 40.909 11.89 11.89 44.60 3.27
4371 5038 5.484173 TTACTTCAGTTTGTGCAACTCTG 57.516 39.130 0.00 0.00 44.60 3.35
4372 5039 6.322491 GTTTTACTTCAGTTTGTGCAACTCT 58.678 36.000 0.00 0.00 44.60 3.24
4373 5040 5.515270 GGTTTTACTTCAGTTTGTGCAACTC 59.485 40.000 0.00 0.00 44.60 3.01
4375 5042 5.164954 TGGTTTTACTTCAGTTTGTGCAAC 58.835 37.500 0.00 0.00 35.32 4.17
4376 5043 5.392767 TGGTTTTACTTCAGTTTGTGCAA 57.607 34.783 0.00 0.00 0.00 4.08
4377 5044 5.126222 TGATGGTTTTACTTCAGTTTGTGCA 59.874 36.000 0.00 0.00 0.00 4.57
4378 5045 5.587289 TGATGGTTTTACTTCAGTTTGTGC 58.413 37.500 0.00 0.00 0.00 4.57
4379 5046 7.026631 TCTGATGGTTTTACTTCAGTTTGTG 57.973 36.000 0.00 0.00 41.10 3.33
4380 5047 6.263168 CCTCTGATGGTTTTACTTCAGTTTGT 59.737 38.462 0.00 0.00 41.10 2.83
4381 5048 6.263168 ACCTCTGATGGTTTTACTTCAGTTTG 59.737 38.462 0.00 0.00 41.10 2.93
4382 5049 6.263168 CACCTCTGATGGTTTTACTTCAGTTT 59.737 38.462 0.00 0.00 41.10 2.66
4383 5050 5.765182 CACCTCTGATGGTTTTACTTCAGTT 59.235 40.000 0.00 0.00 41.10 3.16
4384 5051 5.071788 TCACCTCTGATGGTTTTACTTCAGT 59.928 40.000 0.00 0.00 41.10 3.41
4385 5052 5.409826 GTCACCTCTGATGGTTTTACTTCAG 59.590 44.000 0.00 0.00 41.45 3.02
4386 5053 5.163248 TGTCACCTCTGATGGTTTTACTTCA 60.163 40.000 0.00 0.00 38.45 3.02
4387 5054 5.305585 TGTCACCTCTGATGGTTTTACTTC 58.694 41.667 0.00 0.00 38.45 3.01
4388 5055 5.071788 TCTGTCACCTCTGATGGTTTTACTT 59.928 40.000 0.00 0.00 38.45 2.24
4389 5056 4.593206 TCTGTCACCTCTGATGGTTTTACT 59.407 41.667 0.00 0.00 38.45 2.24
4390 5057 4.894784 TCTGTCACCTCTGATGGTTTTAC 58.105 43.478 0.00 0.00 38.45 2.01
4391 5058 4.563580 GCTCTGTCACCTCTGATGGTTTTA 60.564 45.833 0.00 0.00 38.45 1.52
4392 5059 3.808618 GCTCTGTCACCTCTGATGGTTTT 60.809 47.826 0.00 0.00 38.45 2.43
4393 5060 2.289945 GCTCTGTCACCTCTGATGGTTT 60.290 50.000 0.00 0.00 38.45 3.27
4394 5061 1.277557 GCTCTGTCACCTCTGATGGTT 59.722 52.381 0.00 0.00 38.45 3.67
4395 5062 0.901124 GCTCTGTCACCTCTGATGGT 59.099 55.000 0.00 0.00 41.77 3.55
4396 5063 0.900421 TGCTCTGTCACCTCTGATGG 59.100 55.000 0.00 0.00 0.00 3.51
4397 5064 2.167900 TCATGCTCTGTCACCTCTGATG 59.832 50.000 0.00 0.00 0.00 3.07
4398 5065 2.168106 GTCATGCTCTGTCACCTCTGAT 59.832 50.000 0.00 0.00 0.00 2.90
4399 5066 1.547820 GTCATGCTCTGTCACCTCTGA 59.452 52.381 0.00 0.00 0.00 3.27
4400 5067 1.735038 CGTCATGCTCTGTCACCTCTG 60.735 57.143 0.00 0.00 0.00 3.35
4401 5068 0.529833 CGTCATGCTCTGTCACCTCT 59.470 55.000 0.00 0.00 0.00 3.69
4402 5069 1.080995 GCGTCATGCTCTGTCACCTC 61.081 60.000 0.00 0.00 41.73 3.85
4403 5070 1.079543 GCGTCATGCTCTGTCACCT 60.080 57.895 0.00 0.00 41.73 4.00
4404 5071 3.479370 GCGTCATGCTCTGTCACC 58.521 61.111 0.00 0.00 41.73 4.02
4413 5080 3.181516 CCTTAGTTTGAGAAGCGTCATGC 60.182 47.826 1.61 0.00 46.98 4.06
4414 5081 3.181516 GCCTTAGTTTGAGAAGCGTCATG 60.182 47.826 1.61 0.00 0.00 3.07
4415 5082 3.003480 GCCTTAGTTTGAGAAGCGTCAT 58.997 45.455 1.61 0.00 0.00 3.06
4416 5083 2.224185 TGCCTTAGTTTGAGAAGCGTCA 60.224 45.455 1.61 0.00 0.00 4.35
4417 5084 2.413837 TGCCTTAGTTTGAGAAGCGTC 58.586 47.619 0.00 0.00 0.00 5.19
4418 5085 2.543777 TGCCTTAGTTTGAGAAGCGT 57.456 45.000 0.00 0.00 0.00 5.07
4419 5086 2.029728 CGATGCCTTAGTTTGAGAAGCG 59.970 50.000 0.00 0.00 0.00 4.68
4420 5087 2.352960 CCGATGCCTTAGTTTGAGAAGC 59.647 50.000 0.00 0.00 0.00 3.86
4421 5088 2.352960 GCCGATGCCTTAGTTTGAGAAG 59.647 50.000 0.00 0.00 0.00 2.85
4422 5089 2.027192 AGCCGATGCCTTAGTTTGAGAA 60.027 45.455 0.00 0.00 38.69 2.87
4423 5090 1.555075 AGCCGATGCCTTAGTTTGAGA 59.445 47.619 0.00 0.00 38.69 3.27
4424 5091 2.029838 AGCCGATGCCTTAGTTTGAG 57.970 50.000 0.00 0.00 38.69 3.02
4425 5092 2.356135 GAAGCCGATGCCTTAGTTTGA 58.644 47.619 0.00 0.00 38.69 2.69
4426 5093 1.062587 CGAAGCCGATGCCTTAGTTTG 59.937 52.381 0.00 0.00 38.69 2.93
4427 5094 1.369625 CGAAGCCGATGCCTTAGTTT 58.630 50.000 0.00 0.00 38.69 2.66
4428 5095 3.065575 CGAAGCCGATGCCTTAGTT 57.934 52.632 0.00 0.00 38.69 2.24
5934 7429 1.451028 GGAGAGCTTCTGCGCCAAT 60.451 57.895 4.18 0.00 45.42 3.16
6013 7508 0.541392 ACCAGCAGCATACGATTCCA 59.459 50.000 0.00 0.00 0.00 3.53
6014 7509 1.331756 CAACCAGCAGCATACGATTCC 59.668 52.381 0.00 0.00 0.00 3.01
6161 7658 0.179004 TTTTCCACCATGTCCTGCGT 60.179 50.000 0.00 0.00 0.00 5.24
6175 7672 5.278315 GGACAACAGAATACCACAGTTTTCC 60.278 44.000 0.00 0.00 35.30 3.13
6198 7695 1.180029 CAGGATCAAGTGCTTTGGGG 58.820 55.000 0.00 0.00 37.39 4.96
6199 7696 1.915141 ACAGGATCAAGTGCTTTGGG 58.085 50.000 0.00 0.00 37.39 4.12
6265 7762 7.275999 GGAATACTACAAACAGTAACTGAGAGC 59.724 40.741 0.00 0.00 34.77 4.09
6266 7763 8.524487 AGGAATACTACAAACAGTAACTGAGAG 58.476 37.037 0.00 0.00 34.77 3.20
6305 7809 3.004419 CCTGATGAAACATGCTATGCCTG 59.996 47.826 0.00 0.00 0.00 4.85
6318 7822 7.125659 TCACAGATATAAGACACCCTGATGAAA 59.874 37.037 0.00 0.00 0.00 2.69
6379 7899 1.491274 TTTGGGAACGGAGGGGGTAC 61.491 60.000 0.00 0.00 0.00 3.34
6380 7900 0.550638 ATTTGGGAACGGAGGGGGTA 60.551 55.000 0.00 0.00 0.00 3.69
6381 7901 0.550638 TATTTGGGAACGGAGGGGGT 60.551 55.000 0.00 0.00 0.00 4.95
6382 7902 0.850784 ATATTTGGGAACGGAGGGGG 59.149 55.000 0.00 0.00 0.00 5.40
6383 7903 3.137728 ACTTATATTTGGGAACGGAGGGG 59.862 47.826 0.00 0.00 0.00 4.79
6384 7904 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
6385 7905 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
6386 7906 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
6387 7907 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
6388 7908 8.202137 TCTAGAAAGACTTATATTTGGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
6389 7909 9.250624 CTCTAGAAAGACTTATATTTGGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
6400 7920 9.883142 CTTGTTGGAATCTCTAGAAAGACTTAT 57.117 33.333 0.00 0.00 0.00 1.73
6401 7921 8.871125 ACTTGTTGGAATCTCTAGAAAGACTTA 58.129 33.333 0.00 0.00 0.00 2.24
6402 7922 7.659390 CACTTGTTGGAATCTCTAGAAAGACTT 59.341 37.037 0.00 0.00 0.00 3.01
6403 7923 7.015682 TCACTTGTTGGAATCTCTAGAAAGACT 59.984 37.037 0.00 0.00 0.00 3.24
6404 7924 7.117092 GTCACTTGTTGGAATCTCTAGAAAGAC 59.883 40.741 0.00 0.00 0.00 3.01
6405 7925 7.015682 AGTCACTTGTTGGAATCTCTAGAAAGA 59.984 37.037 0.00 0.00 0.00 2.52
6406 7926 7.158021 AGTCACTTGTTGGAATCTCTAGAAAG 58.842 38.462 0.00 0.00 0.00 2.62
6407 7927 7.067496 AGTCACTTGTTGGAATCTCTAGAAA 57.933 36.000 0.00 0.00 0.00 2.52
6408 7928 6.672266 AGTCACTTGTTGGAATCTCTAGAA 57.328 37.500 0.00 0.00 0.00 2.10
6409 7929 6.719829 TGTAGTCACTTGTTGGAATCTCTAGA 59.280 38.462 0.00 0.00 0.00 2.43
6410 7930 6.925211 TGTAGTCACTTGTTGGAATCTCTAG 58.075 40.000 0.00 0.00 0.00 2.43
6411 7931 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
6412 7932 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
6413 7933 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
6414 7934 6.100004 CGTATGTAGTCACTTGTTGGAATCT 58.900 40.000 0.00 0.00 0.00 2.40
6415 7935 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
6416 7936 5.046878 TCCGTATGTAGTCACTTGTTGGAAT 60.047 40.000 0.00 0.00 0.00 3.01
6417 7937 4.281435 TCCGTATGTAGTCACTTGTTGGAA 59.719 41.667 0.00 0.00 0.00 3.53
6418 7938 3.827876 TCCGTATGTAGTCACTTGTTGGA 59.172 43.478 0.00 0.00 0.00 3.53
6419 7939 4.174009 CTCCGTATGTAGTCACTTGTTGG 58.826 47.826 0.00 0.00 0.00 3.77
6420 7940 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
6421 7941 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
6422 7942 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
6423 7943 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
6424 7944 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
6425 7945 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
6426 7946 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
6427 7947 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
6428 7948 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
6429 7949 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
6430 7950 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
6431 7951 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
6432 7952 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
6433 7953 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
6434 7954 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
6435 7955 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
6436 7956 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
6437 7957 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
6438 7958 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
6439 7959 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
6440 7960 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
6478 7998 8.783093 CAAATGGAATACAACATACGGATGTAT 58.217 33.333 15.10 8.21 45.93 2.29
6479 7999 7.988028 TCAAATGGAATACAACATACGGATGTA 59.012 33.333 15.10 0.00 45.93 2.29
6481 8001 7.258022 TCAAATGGAATACAACATACGGATG 57.742 36.000 5.94 5.94 39.16 3.51
6482 8002 7.873719 TTCAAATGGAATACAACATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
6483 8003 7.689446 TTTCAAATGGAATACAACATACGGA 57.311 32.000 0.00 0.00 34.91 4.69
6484 8004 7.973388 ACATTTCAAATGGAATACAACATACGG 59.027 33.333 14.70 0.00 34.91 4.02
6485 8005 8.909708 ACATTTCAAATGGAATACAACATACG 57.090 30.769 14.70 0.00 34.91 3.06
6513 8033 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
6514 8034 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
6515 8035 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
6516 8036 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
6517 8037 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
6518 8038 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
6519 8039 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
6520 8040 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
6521 8041 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
6522 8042 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
6523 8043 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
6524 8044 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
6525 8045 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
6526 8046 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
6527 8047 3.525199 ACTACTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
6528 8048 3.118112 CACTACTACTCCCTCCGTTCCTA 60.118 52.174 0.00 0.00 0.00 2.94
6529 8049 1.921748 ACTACTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
6530 8050 2.022934 CACTACTACTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
6531 8051 1.404748 GCACTACTACTCCCTCCGTTC 59.595 57.143 0.00 0.00 0.00 3.95
6532 8052 1.272313 TGCACTACTACTCCCTCCGTT 60.272 52.381 0.00 0.00 0.00 4.44
6533 8053 0.330604 TGCACTACTACTCCCTCCGT 59.669 55.000 0.00 0.00 0.00 4.69
6534 8054 1.025812 CTGCACTACTACTCCCTCCG 58.974 60.000 0.00 0.00 0.00 4.63
6535 8055 0.747852 GCTGCACTACTACTCCCTCC 59.252 60.000 0.00 0.00 0.00 4.30
6536 8056 0.747852 GGCTGCACTACTACTCCCTC 59.252 60.000 0.50 0.00 0.00 4.30
6537 8057 0.336737 AGGCTGCACTACTACTCCCT 59.663 55.000 0.50 0.00 0.00 4.20
6538 8058 1.682323 GTAGGCTGCACTACTACTCCC 59.318 57.143 16.22 0.00 40.10 4.30
6539 8059 2.099427 GTGTAGGCTGCACTACTACTCC 59.901 54.545 25.75 0.00 42.92 3.85
6540 8060 2.753452 TGTGTAGGCTGCACTACTACTC 59.247 50.000 30.97 14.77 42.92 2.59
6541 8061 2.492484 GTGTGTAGGCTGCACTACTACT 59.508 50.000 30.97 4.33 42.92 2.57
6694 8214 1.222936 CAGAGTCCTGATGGTGGCC 59.777 63.158 0.00 0.00 43.02 5.36
6747 8267 2.481952 GCTGACTGTCACATTGACCTTC 59.518 50.000 6.36 1.50 46.40 3.46
6762 8282 2.368221 GCCTCCAGAAGATATGCTGACT 59.632 50.000 0.00 0.00 34.06 3.41
6770 8290 2.119495 GGAACAGGCCTCCAGAAGATA 58.881 52.381 0.00 0.00 32.77 1.98
6997 8546 0.939419 GAACACACACACGGGTTACC 59.061 55.000 0.00 0.00 0.00 2.85
6998 8547 1.654317 TGAACACACACACGGGTTAC 58.346 50.000 0.00 0.00 0.00 2.50
6999 8548 2.103432 AGATGAACACACACACGGGTTA 59.897 45.455 0.00 0.00 0.00 2.85
7000 8549 1.134220 AGATGAACACACACACGGGTT 60.134 47.619 0.00 0.00 0.00 4.11
7001 8550 0.468226 AGATGAACACACACACGGGT 59.532 50.000 0.00 0.00 0.00 5.28
7002 8551 0.867746 CAGATGAACACACACACGGG 59.132 55.000 0.00 0.00 0.00 5.28
7003 8552 1.864565 TCAGATGAACACACACACGG 58.135 50.000 0.00 0.00 0.00 4.94
7004 8553 3.942539 TTTCAGATGAACACACACACG 57.057 42.857 0.00 0.00 33.13 4.49
7005 8554 5.235305 ACTTTTCAGATGAACACACACAC 57.765 39.130 0.00 0.00 33.13 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.