AutoCloner

Multiple sequence alignment - TraesCS1D01G059500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G059500	chr1D	100.000	4349	0	0	1	4349	39788623	39792971	0.000000e+00	8032.0
1	TraesCS1D01G059500	chr1D	89.251	1042	98	7	2341	3371	38728623	38729661	0.000000e+00	1291.0
2	TraesCS1D01G059500	chr1D	78.994	895	151	25	1042	1923	38726576	38727446	1.050000e-160	577.0
3	TraesCS1D01G059500	chr1D	77.297	762	165	6	1167	1924	7587816	7587059	3.990000e-120	442.0
4	TraesCS1D01G059500	chr1D	75.899	834	164	19	1105	1924	7429918	7430728	4.080000e-105	392.0
5	TraesCS1D01G059500	chr1B	91.977	1396	62	11	821	2204	58930652	58932009	0.000000e+00	1912.0
6	TraesCS1D01G059500	chr1B	93.918	1266	71	3	2312	3576	58932463	58933723	0.000000e+00	1906.0
7	TraesCS1D01G059500	chr1B	93.513	1187	72	2	2394	3579	58872535	58873717	0.000000e+00	1760.0
8	TraesCS1D01G059500	chr1B	88.993	1072	102	9	2342	3404	58557275	58558339	0.000000e+00	1312.0
9	TraesCS1D01G059500	chr1B	80.262	1221	196	24	1001	2210	58552822	58554008	0.000000e+00	878.0
10	TraesCS1D01G059500	chr1B	90.995	633	50	3	3576	4201	58984399	58985031	0.000000e+00	846.0
11	TraesCS1D01G059500	chr1B	82.516	795	121	15	2362	3145	9940467	9939680	0.000000e+00	682.0
12	TraesCS1D01G059500	chr1B	78.721	766	145	15	1168	1924	9942128	9941372	3.020000e-136	496.0
13	TraesCS1D01G059500	chr1B	77.657	828	154	18	1105	1924	9579037	9579841	3.940000e-130	475.0
14	TraesCS1D01G059500	chr1B	77.284	788	155	21	1148	1923	9490027	9490802	3.990000e-120	442.0
15	TraesCS1D01G059500	chr1B	88.587	368	22	10	365	721	58930031	58930389	3.110000e-116	429.0
16	TraesCS1D01G059500	chr1B	76.196	836	160	24	1105	1925	9899283	9898472	5.240000e-109	405.0
17	TraesCS1D01G059500	chr1B	91.237	194	15	2	3576	3767	58968854	58969047	3.340000e-66	263.0
18	TraesCS1D01G059500	chr1B	91.667	60	1	1	756	811	58930404	58930463	3.610000e-11	80.5
19	TraesCS1D01G059500	chr1A	88.734	1074	105	8	2341	3404	38714044	38715111	0.000000e+00	1299.0
20	TraesCS1D01G059500	chr1A	89.546	1014	98	3	2365	3371	38702734	38703746	0.000000e+00	1279.0
21	TraesCS1D01G059500	chr1A	80.947	971	169	15	2363	3323	9233841	9232877	0.000000e+00	754.0
22	TraesCS1D01G059500	chr1A	79.202	827	145	14	1105	1925	9089829	9090634	2.290000e-152	549.0
23	TraesCS1D01G059500	chr1A	78.995	776	134	15	1158	1923	38712137	38712893	1.810000e-138	503.0
24	TraesCS1D01G059500	chr1A	77.193	855	147	26	1105	1943	9236449	9235627	5.130000e-124	455.0
25	TraesCS1D01G059500	chr2B	79.082	980	189	14	2355	3323	118631855	118632829	0.000000e+00	660.0
26	TraesCS1D01G059500	chr2B	94.059	202	9	3	1	201	24104756	24104955	1.970000e-78	303.0
27	TraesCS1D01G059500	chr3D	79.079	956	172	23	2412	3351	42635477	42636420	2.210000e-177	632.0
28	TraesCS1D01G059500	chr3B	78.857	927	170	21	2412	3323	66419976	66420891	1.730000e-168	603.0
29	TraesCS1D01G059500	chr3B	94.059	202	9	3	1	201	135389565	135389764	1.970000e-78	303.0
30	TraesCS1D01G059500	chr6D	77.341	993	195	28	2352	3327	468181983	468181004	1.060000e-155	560.0
31	TraesCS1D01G059500	chr6D	94.059	202	9	3	1	201	76066703	76066902	1.970000e-78	303.0
32	TraesCS1D01G059500	chr4D	94.554	202	9	2	1	201	54383859	54384059	1.170000e-80	311.0
33	TraesCS1D01G059500	chr4A	94.554	202	9	2	1	201	710015588	710015388	1.170000e-80	311.0
34	TraesCS1D01G059500	chrUn	94.554	202	8	3	1	201	201221157	201220958	4.220000e-80	309.0
35	TraesCS1D01G059500	chr5B	94.554	202	8	3	1	201	476172060	476171861	4.220000e-80	309.0
36	TraesCS1D01G059500	chr7B	94.059	202	9	3	1	201	470243036	470243235	1.970000e-78	303.0
37	TraesCS1D01G059500	chr7B	94.059	202	9	3	1	201	470294023	470294222	1.970000e-78	303.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G059500	chr1D	39788623	39792971	4348	False	8032.000	8032	100.00000	1	4349	1	chr1D.!!$F2	4348
1	TraesCS1D01G059500	chr1D	38726576	38729661	3085	False	934.000	1291	84.12250	1042	3371	2	chr1D.!!$F3	2329
2	TraesCS1D01G059500	chr1D	7587059	7587816	757	True	442.000	442	77.29700	1167	1924	1	chr1D.!!$R1	757
3	TraesCS1D01G059500	chr1D	7429918	7430728	810	False	392.000	392	75.89900	1105	1924	1	chr1D.!!$F1	819
4	TraesCS1D01G059500	chr1B	58872535	58873717	1182	False	1760.000	1760	93.51300	2394	3579	1	chr1B.!!$F3	1185
5	TraesCS1D01G059500	chr1B	58552822	58558339	5517	False	1095.000	1312	84.62750	1001	3404	2	chr1B.!!$F6	2403
6	TraesCS1D01G059500	chr1B	58930031	58933723	3692	False	1081.875	1912	91.53725	365	3576	4	chr1B.!!$F7	3211
7	TraesCS1D01G059500	chr1B	58984399	58985031	632	False	846.000	846	90.99500	3576	4201	1	chr1B.!!$F5	625
8	TraesCS1D01G059500	chr1B	9939680	9942128	2448	True	589.000	682	80.61850	1168	3145	2	chr1B.!!$R2	1977
9	TraesCS1D01G059500	chr1B	9579037	9579841	804	False	475.000	475	77.65700	1105	1924	1	chr1B.!!$F2	819
10	TraesCS1D01G059500	chr1B	9490027	9490802	775	False	442.000	442	77.28400	1148	1923	1	chr1B.!!$F1	775
11	TraesCS1D01G059500	chr1B	9898472	9899283	811	True	405.000	405	76.19600	1105	1925	1	chr1B.!!$R1	820
12	TraesCS1D01G059500	chr1A	38702734	38703746	1012	False	1279.000	1279	89.54600	2365	3371	1	chr1A.!!$F2	1006
13	TraesCS1D01G059500	chr1A	38712137	38715111	2974	False	901.000	1299	83.86450	1158	3404	2	chr1A.!!$F3	2246
14	TraesCS1D01G059500	chr1A	9232877	9236449	3572	True	604.500	754	79.07000	1105	3323	2	chr1A.!!$R1	2218
15	TraesCS1D01G059500	chr1A	9089829	9090634	805	False	549.000	549	79.20200	1105	1925	1	chr1A.!!$F1	820
16	TraesCS1D01G059500	chr2B	118631855	118632829	974	False	660.000	660	79.08200	2355	3323	1	chr2B.!!$F2	968
17	TraesCS1D01G059500	chr3D	42635477	42636420	943	False	632.000	632	79.07900	2412	3351	1	chr3D.!!$F1	939
18	TraesCS1D01G059500	chr3B	66419976	66420891	915	False	603.000	603	78.85700	2412	3323	1	chr3B.!!$F1	911
19	TraesCS1D01G059500	chr6D	468181004	468181983	979	True	560.000	560	77.34100	2352	3327	1	chr6D.!!$R1	975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
484	486	0.030235	GGTTGCCAAAACCGTCAGTC	59.970	55.0	0.00	0.00	0.00	3.51	F
492	494	0.108585	AAACCGTCAGTCATGGCTGT	59.891	50.0	25.84	4.69	37.70	4.40	F
519	521	0.179073	TCAATCGAAGCTAGCTGCCC	60.179	55.0	20.16	9.86	44.23	5.36	F
659	671	0.445436	GTTCCAAGTGATGCTCAGCG	59.555	55.0	0.00	0.00	0.00	5.18	F
2290	6668	0.250295	TTTCAGTGCTTCCGAGTGGG	60.250	55.0	0.00	0.00	35.24	4.61	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1659	1894	0.389426	CGGAAGGTGTAGTTGGTCCG	60.389	60.000	0.00	41.71	4.79	R
2267	6630	1.151668	CTCGGAAGCACTGAAACAGG	58.848	55.000	0.00	35.51	4.00	R
2283	6661	2.496070	TGGAGTTTACTCATCCCACTCG	59.504	50.000	11.67	44.60	4.18	R
2338	6742	3.485743	GCACAAAGAAGCAAAGGTAAACG	59.514	43.478	0.00	0.00	3.60	R
4288	8717	0.035152	CCTGCCAGTGTCCTATGCAA	60.035	55.000	0.00	30.10	4.08	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	7.857734	TCACTAGTTTCAGAAAAACACATCA	57.142	32.000	0.00	0.00	32.81	3.07
27	28	7.693952	TCACTAGTTTCAGAAAAACACATCAC	58.306	34.615	0.00	0.00	32.81	3.06
28	29	7.335673	TCACTAGTTTCAGAAAAACACATCACA	59.664	33.333	0.00	0.00	32.81	3.58
29	30	7.641411	CACTAGTTTCAGAAAAACACATCACAG	59.359	37.037	0.00	0.00	32.81	3.66
30	31	6.515272	AGTTTCAGAAAAACACATCACAGT	57.485	33.333	0.00	0.00	32.81	3.55
31	32	6.924111	AGTTTCAGAAAAACACATCACAGTT	58.076	32.000	0.00	0.00	32.81	3.16
32	33	8.050778	AGTTTCAGAAAAACACATCACAGTTA	57.949	30.769	0.00	0.00	32.81	2.24
33	34	7.968405	AGTTTCAGAAAAACACATCACAGTTAC	59.032	33.333	0.00	0.00	32.81	2.50
34	35	7.624360	TTCAGAAAAACACATCACAGTTACT	57.376	32.000	0.00	0.00	0.00	2.24
35	36	7.246674	TCAGAAAAACACATCACAGTTACTC	57.753	36.000	0.00	0.00	0.00	2.59
36	37	6.260050	TCAGAAAAACACATCACAGTTACTCC	59.740	38.462	0.00	0.00	0.00	3.85
37	38	6.038161	CAGAAAAACACATCACAGTTACTCCA	59.962	38.462	0.00	0.00	0.00	3.86
38	39	6.772716	AGAAAAACACATCACAGTTACTCCAT	59.227	34.615	0.00	0.00	0.00	3.41
39	40	6.959639	AAAACACATCACAGTTACTCCATT	57.040	33.333	0.00	0.00	0.00	3.16
40	41	5.947228	AACACATCACAGTTACTCCATTG	57.053	39.130	0.00	0.00	0.00	2.82
41	42	5.227569	ACACATCACAGTTACTCCATTGA	57.772	39.130	0.00	0.00	0.00	2.57
42	43	5.620206	ACACATCACAGTTACTCCATTGAA	58.380	37.500	0.00	0.00	0.00	2.69
43	44	5.702670	ACACATCACAGTTACTCCATTGAAG	59.297	40.000	0.00	0.00	0.00	3.02
44	45	5.934043	CACATCACAGTTACTCCATTGAAGA	59.066	40.000	0.00	0.00	0.00	2.87
45	46	6.427853	CACATCACAGTTACTCCATTGAAGAA	59.572	38.462	0.00	0.00	0.00	2.52
46	47	6.998074	ACATCACAGTTACTCCATTGAAGAAA	59.002	34.615	0.00	0.00	0.00	2.52
47	48	6.861065	TCACAGTTACTCCATTGAAGAAAC	57.139	37.500	0.00	0.00	0.00	2.78
48	49	6.353323	TCACAGTTACTCCATTGAAGAAACA	58.647	36.000	0.00	0.00	0.00	2.83
49	50	6.826231	TCACAGTTACTCCATTGAAGAAACAA	59.174	34.615	0.00	0.00	0.00	2.83
50	51	7.502226	TCACAGTTACTCCATTGAAGAAACAAT	59.498	33.333	0.00	0.00	40.50	2.71
51	52	8.137437	CACAGTTACTCCATTGAAGAAACAATT	58.863	33.333	0.00	0.00	38.25	2.32
52	53	8.695456	ACAGTTACTCCATTGAAGAAACAATTT	58.305	29.630	0.00	0.00	38.25	1.82
53	54	9.185192	CAGTTACTCCATTGAAGAAACAATTTC	57.815	33.333	0.00	0.00	38.25	2.17
54	55	8.076178	AGTTACTCCATTGAAGAAACAATTTCG	58.924	33.333	0.00	0.00	44.29	3.46
55	56	5.222631	ACTCCATTGAAGAAACAATTTCGC	58.777	37.500	0.00	0.00	44.29	4.70
56	57	5.193663	TCCATTGAAGAAACAATTTCGCA	57.806	34.783	0.00	0.00	44.29	5.10
57	58	5.595885	TCCATTGAAGAAACAATTTCGCAA	58.404	33.333	11.99	11.99	44.29	4.85
58	59	5.691305	TCCATTGAAGAAACAATTTCGCAAG	59.309	36.000	13.82	8.79	44.29	4.01
59	60	5.368374	CATTGAAGAAACAATTTCGCAAGC	58.632	37.500	13.82	0.00	44.29	4.01
60	61	4.305989	TGAAGAAACAATTTCGCAAGCT	57.694	36.364	0.00	0.00	44.29	3.74
61	62	4.043750	TGAAGAAACAATTTCGCAAGCTG	58.956	39.130	0.00	0.00	44.29	4.24
62	63	3.017265	AGAAACAATTTCGCAAGCTGG	57.983	42.857	0.00	0.00	44.29	4.85
63	64	2.622942	AGAAACAATTTCGCAAGCTGGA	59.377	40.909	0.00	0.00	44.29	3.86
64	65	3.068024	AGAAACAATTTCGCAAGCTGGAA	59.932	39.130	0.00	0.00	44.29	3.53
65	66	3.665745	AACAATTTCGCAAGCTGGAAT	57.334	38.095	0.00	0.00	37.18	3.01
66	67	4.782019	AACAATTTCGCAAGCTGGAATA	57.218	36.364	0.00	0.00	37.18	1.75
67	68	4.989279	ACAATTTCGCAAGCTGGAATAT	57.011	36.364	0.00	0.00	37.18	1.28
68	69	4.675510	ACAATTTCGCAAGCTGGAATATG	58.324	39.130	0.00	0.17	37.18	1.78
69	70	4.398988	ACAATTTCGCAAGCTGGAATATGA	59.601	37.500	0.00	0.00	37.18	2.15
70	71	5.105797	ACAATTTCGCAAGCTGGAATATGAA	60.106	36.000	0.00	0.00	37.18	2.57
71	72	5.581126	ATTTCGCAAGCTGGAATATGAAA	57.419	34.783	0.00	0.00	37.18	2.69
72	73	4.355543	TTCGCAAGCTGGAATATGAAAC	57.644	40.909	0.00	0.00	37.18	2.78
73	74	3.609853	TCGCAAGCTGGAATATGAAACT	58.390	40.909	0.00	0.00	37.18	2.66
74	75	3.623060	TCGCAAGCTGGAATATGAAACTC	59.377	43.478	0.00	0.00	37.18	3.01
75	76	3.374988	CGCAAGCTGGAATATGAAACTCA	59.625	43.478	0.00	0.00	0.00	3.41
76	77	4.666237	GCAAGCTGGAATATGAAACTCAC	58.334	43.478	0.00	0.00	0.00	3.51
77	78	4.156556	GCAAGCTGGAATATGAAACTCACA	59.843	41.667	0.00	0.00	0.00	3.58
78	79	5.335897	GCAAGCTGGAATATGAAACTCACAA	60.336	40.000	0.00	0.00	0.00	3.33
79	80	6.680810	CAAGCTGGAATATGAAACTCACAAA	58.319	36.000	0.00	0.00	0.00	2.83
80	81	6.506500	AGCTGGAATATGAAACTCACAAAG	57.493	37.500	0.00	0.00	0.00	2.77
81	82	6.240894	AGCTGGAATATGAAACTCACAAAGA	58.759	36.000	0.00	0.00	0.00	2.52
82	83	6.716628	AGCTGGAATATGAAACTCACAAAGAA	59.283	34.615	0.00	0.00	0.00	2.52
83	84	7.231317	AGCTGGAATATGAAACTCACAAAGAAA	59.769	33.333	0.00	0.00	0.00	2.52
84	85	7.867403	GCTGGAATATGAAACTCACAAAGAAAA	59.133	33.333	0.00	0.00	0.00	2.29
85	86	9.185192	CTGGAATATGAAACTCACAAAGAAAAC	57.815	33.333	0.00	0.00	0.00	2.43
86	87	8.912988	TGGAATATGAAACTCACAAAGAAAACT	58.087	29.630	0.00	0.00	0.00	2.66
216	217	9.232473	AGTAAAATTAACCAAGAGAAGACCATC	57.768	33.333	0.00	0.00	0.00	3.51
217	218	9.010029	GTAAAATTAACCAAGAGAAGACCATCA	57.990	33.333	0.00	0.00	0.00	3.07
218	219	7.454260	AAATTAACCAAGAGAAGACCATCAC	57.546	36.000	0.00	0.00	0.00	3.06
219	220	3.425162	AACCAAGAGAAGACCATCACC	57.575	47.619	0.00	0.00	0.00	4.02
220	221	1.276421	ACCAAGAGAAGACCATCACCG	59.724	52.381	0.00	0.00	0.00	4.94
221	222	1.550524	CCAAGAGAAGACCATCACCGA	59.449	52.381	0.00	0.00	0.00	4.69
222	223	2.028112	CCAAGAGAAGACCATCACCGAA	60.028	50.000	0.00	0.00	0.00	4.30
223	224	3.557054	CCAAGAGAAGACCATCACCGAAA	60.557	47.826	0.00	0.00	0.00	3.46
224	225	4.256920	CAAGAGAAGACCATCACCGAAAT	58.743	43.478	0.00	0.00	0.00	2.17
225	226	3.866651	AGAGAAGACCATCACCGAAATG	58.133	45.455	0.00	0.00	0.00	2.32
226	227	3.515502	AGAGAAGACCATCACCGAAATGA	59.484	43.478	0.00	0.00	0.00	2.57
227	228	3.600388	AGAAGACCATCACCGAAATGAC	58.400	45.455	0.00	0.00	0.00	3.06
228	229	3.007940	AGAAGACCATCACCGAAATGACA	59.992	43.478	0.00	0.00	0.00	3.58
229	230	3.417069	AGACCATCACCGAAATGACAA	57.583	42.857	0.00	0.00	0.00	3.18
230	231	3.750371	AGACCATCACCGAAATGACAAA	58.250	40.909	0.00	0.00	0.00	2.83
231	232	4.141287	AGACCATCACCGAAATGACAAAA	58.859	39.130	0.00	0.00	0.00	2.44
232	233	4.582656	AGACCATCACCGAAATGACAAAAA	59.417	37.500	0.00	0.00	0.00	1.94
233	234	5.243730	AGACCATCACCGAAATGACAAAAAT	59.756	36.000	0.00	0.00	0.00	1.82
234	235	6.432783	AGACCATCACCGAAATGACAAAAATA	59.567	34.615	0.00	0.00	0.00	1.40
235	236	6.987386	ACCATCACCGAAATGACAAAAATAA	58.013	32.000	0.00	0.00	0.00	1.40
236	237	7.437748	ACCATCACCGAAATGACAAAAATAAA	58.562	30.769	0.00	0.00	0.00	1.40
237	238	7.383843	ACCATCACCGAAATGACAAAAATAAAC	59.616	33.333	0.00	0.00	0.00	2.01
238	239	7.148656	CCATCACCGAAATGACAAAAATAAACC	60.149	37.037	0.00	0.00	0.00	3.27
239	240	5.915758	TCACCGAAATGACAAAAATAAACCG	59.084	36.000	0.00	0.00	0.00	4.44
240	241	5.915758	CACCGAAATGACAAAAATAAACCGA	59.084	36.000	0.00	0.00	0.00	4.69
241	242	6.418226	CACCGAAATGACAAAAATAAACCGAA	59.582	34.615	0.00	0.00	0.00	4.30
242	243	6.639279	ACCGAAATGACAAAAATAAACCGAAG	59.361	34.615	0.00	0.00	0.00	3.79
255	256	3.036084	CGAAGGAACGCACGTGCT	61.036	61.111	35.27	20.40	39.32	4.40
256	257	1.731613	CGAAGGAACGCACGTGCTA	60.732	57.895	35.27	0.00	39.32	3.49
257	258	1.279527	CGAAGGAACGCACGTGCTAA	61.280	55.000	35.27	0.00	39.32	3.09
258	259	0.163146	GAAGGAACGCACGTGCTAAC	59.837	55.000	35.27	24.37	39.32	2.34
259	260	0.249741	AAGGAACGCACGTGCTAACT	60.250	50.000	35.27	24.27	39.32	2.24
260	261	0.599558	AGGAACGCACGTGCTAACTA	59.400	50.000	35.27	0.00	39.32	2.24
261	262	1.000060	AGGAACGCACGTGCTAACTAA	60.000	47.619	35.27	0.00	39.32	2.24
262	263	1.389106	GGAACGCACGTGCTAACTAAG	59.611	52.381	35.27	21.31	39.32	2.18
263	264	2.322161	GAACGCACGTGCTAACTAAGA	58.678	47.619	35.27	0.00	39.32	2.10
264	265	1.978542	ACGCACGTGCTAACTAAGAG	58.021	50.000	35.27	19.91	39.32	2.85
265	266	0.640768	CGCACGTGCTAACTAAGAGC	59.359	55.000	35.27	7.49	40.53	4.09
266	267	0.640768	GCACGTGCTAACTAAGAGCG	59.359	55.000	32.55	0.00	43.19	5.03
267	268	0.640768	CACGTGCTAACTAAGAGCGC	59.359	55.000	0.82	0.00	45.08	5.92
268	269	0.526662	ACGTGCTAACTAAGAGCGCT	59.473	50.000	11.27	11.27	46.09	5.92
269	270	1.192793	CGTGCTAACTAAGAGCGCTC	58.807	55.000	30.01	30.01	46.09	5.03
270	271	1.467543	CGTGCTAACTAAGAGCGCTCA	60.468	52.381	36.87	18.30	46.09	4.26
271	272	1.921230	GTGCTAACTAAGAGCGCTCAC	59.079	52.381	36.87	20.50	45.09	3.51
272	273	1.135083	TGCTAACTAAGAGCGCTCACC	60.135	52.381	36.87	13.62	43.19	4.02
273	274	1.828832	CTAACTAAGAGCGCTCACCG	58.171	55.000	36.87	25.12	40.75	4.94
274	275	1.400846	CTAACTAAGAGCGCTCACCGA	59.599	52.381	36.87	18.41	40.02	4.69
275	276	0.601558	AACTAAGAGCGCTCACCGAA	59.398	50.000	36.87	16.83	40.02	4.30
276	277	0.109226	ACTAAGAGCGCTCACCGAAC	60.109	55.000	36.87	11.20	40.02	3.95
277	278	0.171455	CTAAGAGCGCTCACCGAACT	59.829	55.000	36.87	13.78	40.02	3.01
278	279	1.400846	CTAAGAGCGCTCACCGAACTA	59.599	52.381	36.87	15.39	40.02	2.24
279	280	0.171455	AAGAGCGCTCACCGAACTAG	59.829	55.000	36.87	0.00	40.02	2.57
280	281	1.226717	GAGCGCTCACCGAACTAGG	60.227	63.158	31.91	0.00	40.02	3.02
281	282	2.886124	GCGCTCACCGAACTAGGC	60.886	66.667	0.00	0.00	40.02	3.93
282	283	2.202756	CGCTCACCGAACTAGGCC	60.203	66.667	0.00	0.00	40.02	5.19
283	284	2.202756	GCTCACCGAACTAGGCCG	60.203	66.667	0.00	0.00	33.69	6.13
284	285	2.707849	GCTCACCGAACTAGGCCGA	61.708	63.158	0.00	0.00	33.69	5.54
285	286	1.433879	CTCACCGAACTAGGCCGAG	59.566	63.158	11.86	11.86	33.69	4.63
286	287	2.202756	CACCGAACTAGGCCGAGC	60.203	66.667	13.48	0.00	33.69	5.03
297	298	2.563427	GCCGAGCCAGAAAAGCAC	59.437	61.111	0.00	0.00	0.00	4.40
298	299	2.863153	CCGAGCCAGAAAAGCACG	59.137	61.111	0.00	0.00	42.78	5.34
299	300	2.174349	CGAGCCAGAAAAGCACGC	59.826	61.111	0.00	0.00	37.50	5.34
300	301	2.563427	GAGCCAGAAAAGCACGCC	59.437	61.111	0.00	0.00	0.00	5.68
301	302	1.968540	GAGCCAGAAAAGCACGCCT	60.969	57.895	0.00	0.00	0.00	5.52
302	303	0.673644	GAGCCAGAAAAGCACGCCTA	60.674	55.000	0.00	0.00	0.00	3.93
303	304	0.035056	AGCCAGAAAAGCACGCCTAT	60.035	50.000	0.00	0.00	0.00	2.57
304	305	0.811281	GCCAGAAAAGCACGCCTATT	59.189	50.000	0.00	0.00	0.00	1.73
305	306	1.202348	GCCAGAAAAGCACGCCTATTT	59.798	47.619	0.00	0.00	0.00	1.40
306	307	2.867429	CCAGAAAAGCACGCCTATTTG	58.133	47.619	0.00	0.00	0.00	2.32
307	308	2.487762	CCAGAAAAGCACGCCTATTTGA	59.512	45.455	0.00	0.00	0.00	2.69
308	309	3.426695	CCAGAAAAGCACGCCTATTTGAG	60.427	47.826	0.00	0.00	0.00	3.02
320	321	2.952310	CCTATTTGAGGCAGTAAAGGGC	59.048	50.000	0.00	0.00	38.96	5.19
326	327	3.890674	GCAGTAAAGGGCCACGAG	58.109	61.111	6.18	0.00	0.00	4.18
327	328	1.745489	GCAGTAAAGGGCCACGAGG	60.745	63.158	6.18	0.00	38.23	4.63
328	329	1.980052	CAGTAAAGGGCCACGAGGA	59.020	57.895	6.18	0.00	36.89	3.71
329	330	0.108138	CAGTAAAGGGCCACGAGGAG	60.108	60.000	6.18	0.00	36.89	3.69
330	331	1.449778	GTAAAGGGCCACGAGGAGC	60.450	63.158	6.18	0.00	36.89	4.70
331	332	1.612442	TAAAGGGCCACGAGGAGCT	60.612	57.895	6.18	0.00	36.89	4.09
332	333	1.899437	TAAAGGGCCACGAGGAGCTG	61.899	60.000	6.18	0.00	36.89	4.24
334	335	4.459089	GGGCCACGAGGAGCTGTC	62.459	72.222	4.39	0.00	36.89	3.51
335	336	4.803426	GGCCACGAGGAGCTGTCG	62.803	72.222	12.45	12.45	43.25	4.35
336	337	3.749064	GCCACGAGGAGCTGTCGA	61.749	66.667	19.32	0.00	39.92	4.20
337	338	3.069980	GCCACGAGGAGCTGTCGAT	62.070	63.158	19.32	3.89	39.92	3.59
338	339	1.513158	CCACGAGGAGCTGTCGATT	59.487	57.895	19.32	0.00	39.92	3.34
339	340	0.108615	CCACGAGGAGCTGTCGATTT	60.109	55.000	19.32	0.00	39.92	2.17
340	341	1.673033	CCACGAGGAGCTGTCGATTTT	60.673	52.381	19.32	0.00	39.92	1.82
341	342	2.069273	CACGAGGAGCTGTCGATTTTT	58.931	47.619	19.32	0.00	39.92	1.94
342	343	3.250744	CACGAGGAGCTGTCGATTTTTA	58.749	45.455	19.32	0.00	39.92	1.52
343	344	3.304559	CACGAGGAGCTGTCGATTTTTAG	59.695	47.826	19.32	0.39	39.92	1.85
344	345	2.282820	CGAGGAGCTGTCGATTTTTAGC	59.717	50.000	9.05	0.00	39.92	3.09
346	347	4.683832	GAGGAGCTGTCGATTTTTAGCTA	58.316	43.478	0.00	0.00	45.76	3.32
347	348	4.434520	AGGAGCTGTCGATTTTTAGCTAC	58.565	43.478	10.80	10.80	45.76	3.58
348	349	4.181578	GGAGCTGTCGATTTTTAGCTACA	58.818	43.478	12.79	0.00	45.76	2.74
349	350	4.268884	GGAGCTGTCGATTTTTAGCTACAG	59.731	45.833	12.79	4.91	45.76	2.74
351	352	3.542291	GCTGTCGATTTTTAGCTACAGCG	60.542	47.826	15.90	7.89	46.97	5.18
352	353	5.721148	GCTGTCGATTTTTAGCTACAGCGA	61.721	45.833	15.90	9.88	46.97	4.93
353	354	7.446078	GCTGTCGATTTTTAGCTACAGCGAG	62.446	48.000	15.90	4.47	46.97	5.03
362	363	2.488355	TACAGCGAGTGTAGCGGC	59.512	61.111	0.00	0.00	40.94	6.53
363	364	2.337246	TACAGCGAGTGTAGCGGCA	61.337	57.895	1.45	0.00	40.94	5.69
420	421	1.269723	CGCCCCTGGTTTTTCTTCTTC	59.730	52.381	0.00	0.00	0.00	2.87
446	448	3.118629	GGCAATGATGAGTGAGTCTACCA	60.119	47.826	0.00	0.00	0.00	3.25
464	466	3.801698	ACCAATCATTCATCAGAGGTCG	58.198	45.455	0.00	0.00	0.00	4.79
475	477	0.821711	CAGAGGTCGGGTTGCCAAAA	60.822	55.000	0.00	0.00	0.00	2.44
481	483	3.527641	GGGTTGCCAAAACCGTCA	58.472	55.556	1.38	0.00	41.18	4.35
482	484	1.362355	GGGTTGCCAAAACCGTCAG	59.638	57.895	1.38	0.00	41.18	3.51
483	485	1.388837	GGGTTGCCAAAACCGTCAGT	61.389	55.000	1.38	0.00	41.18	3.41
484	486	0.030235	GGTTGCCAAAACCGTCAGTC	59.970	55.000	0.00	0.00	0.00	3.51
485	487	0.736053	GTTGCCAAAACCGTCAGTCA	59.264	50.000	0.00	0.00	0.00	3.41
486	488	1.336755	GTTGCCAAAACCGTCAGTCAT	59.663	47.619	0.00	0.00	0.00	3.06
487	489	0.950836	TGCCAAAACCGTCAGTCATG	59.049	50.000	0.00	0.00	0.00	3.07
488	490	0.240945	GCCAAAACCGTCAGTCATGG	59.759	55.000	0.00	0.00	37.24	3.66
492	494	0.108585	AAACCGTCAGTCATGGCTGT	59.891	50.000	25.84	4.69	37.70	4.40
502	504	4.644234	TCAGTCATGGCTGTTTTCTTTTCA	59.356	37.500	25.84	0.39	37.70	2.69
509	511	5.280945	TGGCTGTTTTCTTTTCAATCGAAG	58.719	37.500	0.00	0.00	31.28	3.79
519	521	0.179073	TCAATCGAAGCTAGCTGCCC	60.179	55.000	20.16	9.86	44.23	5.36
527	529	4.232878	CTAGCTGCCCGGCTGGAG	62.233	72.222	15.09	4.20	42.23	3.86
564	566	1.806542	CAAATCAAGTCACGGGGTCAG	59.193	52.381	0.00	0.00	0.00	3.51
575	577	2.293399	CACGGGGTCAGGAAAGAAAAAG	59.707	50.000	0.00	0.00	0.00	2.27
576	578	2.173996	ACGGGGTCAGGAAAGAAAAAGA	59.826	45.455	0.00	0.00	0.00	2.52
642	654	1.482593	CTCCCACTCGCTATCCAAGTT	59.517	52.381	0.00	0.00	0.00	2.66
648	660	2.567615	ACTCGCTATCCAAGTTCCAAGT	59.432	45.455	0.00	0.00	0.00	3.16
659	671	0.445436	GTTCCAAGTGATGCTCAGCG	59.555	55.000	0.00	0.00	0.00	5.18
696	708	3.822735	AGAATACCATGCATGCGCTATTT	59.177	39.130	21.69	8.01	39.64	1.40
726	738	8.766994	ATATATACAAAAGGCATTCAAGTGGT	57.233	30.769	0.00	0.00	0.00	4.16
727	739	9.860650	ATATATACAAAAGGCATTCAAGTGGTA	57.139	29.630	0.00	0.00	0.00	3.25
728	740	8.766994	ATATACAAAAGGCATTCAAGTGGTAT	57.233	30.769	0.00	0.00	0.00	2.73
730	742	6.267496	ACAAAAGGCATTCAAGTGGTATAC	57.733	37.500	0.00	0.00	0.00	1.47
731	743	5.185056	ACAAAAGGCATTCAAGTGGTATACC	59.815	40.000	15.50	15.50	0.00	2.73
732	744	4.862641	AAGGCATTCAAGTGGTATACCT	57.137	40.909	22.41	0.19	36.82	3.08
733	745	4.862641	AGGCATTCAAGTGGTATACCTT	57.137	40.909	22.41	7.01	36.82	3.50
734	746	5.193099	AGGCATTCAAGTGGTATACCTTT	57.807	39.130	22.41	13.72	36.82	3.11
735	747	5.193679	AGGCATTCAAGTGGTATACCTTTC	58.806	41.667	22.41	12.59	36.82	2.62
736	748	4.338400	GGCATTCAAGTGGTATACCTTTCC	59.662	45.833	22.41	10.01	36.82	3.13
737	749	4.947388	GCATTCAAGTGGTATACCTTTCCA	59.053	41.667	22.41	0.00	36.82	3.53
744	756	3.442625	GTGGTATACCTTTCCACTTTGGC	59.557	47.826	22.41	0.00	45.46	4.52
745	757	3.074687	TGGTATACCTTTCCACTTTGGCA	59.925	43.478	22.41	0.00	35.51	4.92
746	758	3.442625	GGTATACCTTTCCACTTTGGCAC	59.557	47.826	15.09	0.00	37.47	5.01
747	759	2.738587	TACCTTTCCACTTTGGCACA	57.261	45.000	0.00	0.00	37.47	4.57
748	760	2.086610	ACCTTTCCACTTTGGCACAT	57.913	45.000	0.00	0.00	39.30	3.21
749	761	3.237268	ACCTTTCCACTTTGGCACATA	57.763	42.857	0.00	0.00	39.30	2.29
750	762	2.890945	ACCTTTCCACTTTGGCACATAC	59.109	45.455	0.00	0.00	39.30	2.39
751	763	3.157087	CCTTTCCACTTTGGCACATACT	58.843	45.455	0.00	0.00	39.30	2.12
752	764	3.191371	CCTTTCCACTTTGGCACATACTC	59.809	47.826	0.00	0.00	39.30	2.59
753	765	2.489938	TCCACTTTGGCACATACTCC	57.510	50.000	0.00	0.00	39.30	3.85
754	766	1.702401	TCCACTTTGGCACATACTCCA	59.298	47.619	0.00	0.00	39.30	3.86
807	823	5.999600	CACCAACTTGCATGGATAGATATGA	59.000	40.000	11.80	0.00	40.56	2.15
811	827	6.754702	ACTTGCATGGATAGATATGAATGC	57.245	37.500	4.44	0.00	40.57	3.56
812	828	5.353400	ACTTGCATGGATAGATATGAATGCG	59.647	40.000	4.44	0.00	42.53	4.73
813	829	4.835678	TGCATGGATAGATATGAATGCGT	58.164	39.130	0.00	0.00	42.53	5.24
814	830	4.632688	TGCATGGATAGATATGAATGCGTG	59.367	41.667	0.00	4.21	42.53	5.34
815	831	4.872124	GCATGGATAGATATGAATGCGTGA	59.128	41.667	10.20	0.00	32.04	4.35
816	832	5.526479	GCATGGATAGATATGAATGCGTGAT	59.474	40.000	10.20	0.00	32.04	3.06
817	833	6.511282	GCATGGATAGATATGAATGCGTGATG	60.511	42.308	10.20	0.00	32.04	3.07
818	834	4.872124	TGGATAGATATGAATGCGTGATGC	59.128	41.667	0.00	0.00	46.70	3.91
844	1039	2.672908	TACGTTGCTATCTCGGCCGC	62.673	60.000	23.51	5.52	0.00	6.53
929	1128	4.566004	TCCACACCGTTTTGAGAATCTAG	58.434	43.478	0.00	0.00	34.92	2.43
930	1129	3.125316	CCACACCGTTTTGAGAATCTAGC	59.875	47.826	0.00	0.00	34.92	3.42
931	1130	3.997021	CACACCGTTTTGAGAATCTAGCT	59.003	43.478	0.00	0.00	34.92	3.32
932	1131	4.452455	CACACCGTTTTGAGAATCTAGCTT	59.548	41.667	0.00	0.00	34.92	3.74
933	1132	4.691216	ACACCGTTTTGAGAATCTAGCTTC	59.309	41.667	0.00	0.00	34.92	3.86
934	1133	4.932200	CACCGTTTTGAGAATCTAGCTTCT	59.068	41.667	8.56	8.56	38.18	2.85
935	1134	4.932200	ACCGTTTTGAGAATCTAGCTTCTG	59.068	41.667	13.41	0.57	35.63	3.02
936	1135	4.932200	CCGTTTTGAGAATCTAGCTTCTGT	59.068	41.667	13.41	0.00	35.63	3.41
937	1136	6.100004	CCGTTTTGAGAATCTAGCTTCTGTA	58.900	40.000	13.41	0.35	35.63	2.74
938	1137	6.254589	CCGTTTTGAGAATCTAGCTTCTGTAG	59.745	42.308	13.41	0.25	35.63	2.74
939	1138	6.809196	CGTTTTGAGAATCTAGCTTCTGTAGT	59.191	38.462	13.41	0.00	35.63	2.73
940	1139	7.329717	CGTTTTGAGAATCTAGCTTCTGTAGTT	59.670	37.037	13.41	0.00	35.63	2.24
941	1140	9.640963	GTTTTGAGAATCTAGCTTCTGTAGTTA	57.359	33.333	13.41	0.00	35.63	2.24
958	1157	4.708726	AGTTAAATCATCAGCTGGTTGC	57.291	40.909	15.13	0.00	43.29	4.17
994	1198	3.503363	GGCGTGCATCAGCTGGTC	61.503	66.667	15.13	3.86	42.74	4.02
995	1199	2.435586	GCGTGCATCAGCTGGTCT	60.436	61.111	15.13	0.00	42.74	3.85
999	1203	0.801251	GTGCATCAGCTGGTCTCAAC	59.199	55.000	15.13	1.78	42.74	3.18
1142	1347	2.587889	CCCTACCCGTTCGGCATT	59.412	61.111	5.66	0.00	33.26	3.56
1143	1348	1.817941	CCCTACCCGTTCGGCATTG	60.818	63.158	5.66	0.00	33.26	2.82
1144	1349	1.817941	CCTACCCGTTCGGCATTGG	60.818	63.158	5.66	3.27	33.26	3.16
1145	1350	2.437002	TACCCGTTCGGCATTGGC	60.437	61.111	5.66	0.00	40.13	4.52
1612	1847	1.246056	TTCCGGGAGTACGACCACAG	61.246	60.000	0.00	5.10	35.47	3.66
1659	1894	2.320339	CTACGCCTTCCTCGTCGACC	62.320	65.000	10.58	0.00	40.89	4.79
1790	2034	2.884997	TATCGTGCGCCCAAGCCAAT	62.885	55.000	4.18	0.00	36.02	3.16
1791	2035	4.781959	CGTGCGCCCAAGCCAATG	62.782	66.667	4.18	0.00	36.02	2.82
1800	2044	1.272092	CCCAAGCCAATGAGACCAAGA	60.272	52.381	0.00	0.00	0.00	3.02
1892	2136	1.144057	CGAAGGCTACGAGGGCAAT	59.856	57.895	0.00	0.00	0.00	3.56
2190	3009	3.520290	TTGCATAGGTAACCTCAGACG	57.480	47.619	0.00	0.00	34.61	4.18
2204	3115	3.558418	CCTCAGACGAGCTACTACTTCTC	59.442	52.174	0.00	0.00	38.00	2.87
2205	3116	4.185394	CTCAGACGAGCTACTACTTCTCA	58.815	47.826	0.00	0.00	31.00	3.27
2206	3117	4.576879	TCAGACGAGCTACTACTTCTCAA	58.423	43.478	0.00	0.00	0.00	3.02
2208	3119	6.346896	TCAGACGAGCTACTACTTCTCAATA	58.653	40.000	0.00	0.00	0.00	1.90
2212	3490	8.995220	AGACGAGCTACTACTTCTCAATATTAG	58.005	37.037	0.00	0.00	0.00	1.73
2228	3506	9.642327	CTCAATATTAGATGTTGGATCTGAGAG	57.358	37.037	0.00	0.00	32.92	3.20
2237	3515	3.728385	TGGATCTGAGAGTCTGAGACA	57.272	47.619	15.86	3.73	34.60	3.41
2240	3518	2.841442	TCTGAGAGTCTGAGACACGA	57.159	50.000	15.86	0.00	34.60	4.35
2245	6608	5.525745	TCTGAGAGTCTGAGACACGATTATC	59.474	44.000	15.86	1.50	34.60	1.75
2259	6622	9.088512	AGACACGATTATCTTCAATTTCAGTAC	57.911	33.333	0.00	0.00	0.00	2.73
2262	6625	9.694520	CACGATTATCTTCAATTTCAGTACTTG	57.305	33.333	0.00	0.00	0.00	3.16
2283	6661	2.352127	GCAATCCTGTTTCAGTGCTTCC	60.352	50.000	4.40	0.00	31.31	3.46
2284	6662	1.813513	ATCCTGTTTCAGTGCTTCCG	58.186	50.000	0.00	0.00	0.00	4.30
2289	6667	0.868406	GTTTCAGTGCTTCCGAGTGG	59.132	55.000	0.00	0.00	0.00	4.00
2290	6668	0.250295	TTTCAGTGCTTCCGAGTGGG	60.250	55.000	0.00	0.00	35.24	4.61
2291	6669	1.118965	TTCAGTGCTTCCGAGTGGGA	61.119	55.000	0.00	0.00	45.40	4.37
2305	6683	3.676324	CGAGTGGGATGAGTAAACTCCAC	60.676	52.174	7.63	8.73	42.20	4.02
2310	6688	5.817816	GTGGGATGAGTAAACTCCACTATTG	59.182	44.000	7.63	0.00	42.20	1.90
2707	7122	4.033358	CACAAGAACATCGTTAGGCTCATC	59.967	45.833	0.00	0.00	0.00	2.92
2762	7177	6.073440	GCTAGTGTACGAGTTCATTTCCAAAA	60.073	38.462	0.00	0.00	0.00	2.44
2812	7233	0.693049	GGGAGCCTCTCAACTTGGAA	59.307	55.000	0.00	0.00	31.08	3.53
2858	7279	4.760530	TCAGCACATGGTCTAGCTTATT	57.239	40.909	0.00	0.00	34.61	1.40
3110	7532	5.538053	TCATCTTAGAGGTCATTAGCAGGAG	59.462	44.000	0.00	0.00	0.00	3.69
3154	7576	7.654520	ACAATAACAGCTTAGTGACGAGTTTTA	59.345	33.333	0.15	0.00	33.14	1.52
3157	7579	5.169295	ACAGCTTAGTGACGAGTTTTATCC	58.831	41.667	0.00	0.00	0.00	2.59
3161	7583	6.152323	AGCTTAGTGACGAGTTTTATCCAGTA	59.848	38.462	0.00	0.00	0.00	2.74
3236	7658	3.385755	ACAGGAAATTTGCAGCTTCTTGT	59.614	39.130	12.54	13.16	35.34	3.16
3246	7668	1.728971	CAGCTTCTTGTTACTCTGGCG	59.271	52.381	0.00	0.00	0.00	5.69
3293	7715	4.097437	CCTTGATGTGGATCAAAGACCATG	59.903	45.833	0.00	0.00	45.89	3.66
3327	7749	1.813753	GGCGCGCCTTCTCACATTA	60.814	57.895	41.71	0.00	0.00	1.90
3422	7844	4.202141	TGTGCTCCTTCAAAGTTTGGAATG	60.202	41.667	15.47	1.60	0.00	2.67
3427	7849	4.588106	TCCTTCAAAGTTTGGAATGCATCA	59.412	37.500	15.47	0.00	0.00	3.07
3441	7863	5.481105	GAATGCATCAAATTTCTTCCCACA	58.519	37.500	0.00	0.00	0.00	4.17
3454	7876	1.073722	CCCACAGCAAAGCCAGAGA	59.926	57.895	0.00	0.00	0.00	3.10
3477	7899	2.562912	GCAACCATCCACGTGCAG	59.437	61.111	10.91	1.31	36.97	4.41
3533	7955	6.589907	GGCCACCATTAGTTTTAGAAAATGTG	59.410	38.462	0.00	0.00	0.00	3.21
3534	7956	7.151976	GCCACCATTAGTTTTAGAAAATGTGT	58.848	34.615	0.00	0.00	0.00	3.72
3535	7957	8.301002	GCCACCATTAGTTTTAGAAAATGTGTA	58.699	33.333	0.00	0.00	0.00	2.90
3536	7958	9.620660	CCACCATTAGTTTTAGAAAATGTGTAC	57.379	33.333	0.00	0.00	0.00	2.90
3585	8007	7.497579	TGTGTGTTTCATGTGACTAAATGTAGT	59.502	33.333	0.00	0.00	43.56	2.73
3645	8068	0.243636	CGATCCTTTGGGTTTGGCAC	59.756	55.000	0.00	0.00	0.00	5.01
3657	8080	0.480690	TTTGGCACCTGCTTTCCCTA	59.519	50.000	0.00	0.00	41.70	3.53
3674	8097	2.024941	CCCTATGCTTTCTTTCCCCTGT	60.025	50.000	0.00	0.00	0.00	4.00
3682	8105	3.943671	TTCTTTCCCCTGTCAACTTGA	57.056	42.857	0.00	0.00	0.00	3.02
3698	8121	6.641723	GTCAACTTGAGAGTTACAGGTTACTC	59.358	42.308	9.84	9.84	44.14	2.59
3708	8131	7.990886	AGAGTTACAGGTTACTCAAAATGTTGA	59.009	33.333	17.66	0.00	40.54	3.18
3712	8135	9.743057	TTACAGGTTACTCAAAATGTTGAATTG	57.257	29.630	0.00	0.00	43.18	2.32
3733	8156	0.526662	GTGGACTAGTGGAGACCGTG	59.473	60.000	0.00	0.00	42.38	4.94
3788	8211	9.512435	GTGGAAAAATCATCTATGATCAAACTG	57.488	33.333	0.00	0.00	46.22	3.16
3803	8226	8.033178	TGATCAAACTGGAAGGATGTGATATA	57.967	34.615	0.00	0.00	39.30	0.86
3810	8233	7.248976	ACTGGAAGGATGTGATATAGGTGATA	58.751	38.462	0.00	0.00	39.30	2.15
3824	8247	3.544684	AGGTGATAAATGATGCTTGCGA	58.455	40.909	0.00	0.00	0.00	5.10
3833	8256	6.570672	AAATGATGCTTGCGATATTCAGAT	57.429	33.333	0.00	0.00	0.00	2.90
3836	8259	3.614159	TGCTTGCGATATTCAGATTGC	57.386	42.857	0.00	0.00	36.83	3.56
3849	8272	5.885230	TTCAGATTGCAGTGAATTACCTG	57.115	39.130	0.00	0.51	0.00	4.00
3883	8306	2.182030	CGAGGCGGAAGAGACACC	59.818	66.667	0.00	0.00	0.00	4.16
3884	8307	2.344203	CGAGGCGGAAGAGACACCT	61.344	63.158	0.00	0.00	0.00	4.00
3886	8309	1.534235	AGGCGGAAGAGACACCTGT	60.534	57.895	0.00	0.00	0.00	4.00
3899	8322	2.887568	CCTGTGTGCTCGATCGGC	60.888	66.667	16.41	17.41	0.00	5.54
3956	8379	3.770666	GAAGATGACCTTCGACGATGAA	58.229	45.455	11.97	0.00	41.54	2.57
3978	8406	3.493303	GCCATGGGAGGGGAGGAC	61.493	72.222	15.13	0.00	0.00	3.85
4072	8501	1.302511	CCCGAGGTGAGTTGGGTTG	60.303	63.158	0.00	0.00	36.45	3.77
4075	8504	1.844130	GAGGTGAGTTGGGTTGGGT	59.156	57.895	0.00	0.00	0.00	4.51
4128	8557	2.683211	ATATGGGTTGGGCCAAGATC	57.317	50.000	21.62	12.51	39.65	2.75
4137	8566	0.039618	GGGCCAAGATCTTTGGGTGA	59.960	55.000	19.31	0.00	39.90	4.02
4168	8597	3.373877	CCACCCTACACCCTACTACATCT	60.374	52.174	0.00	0.00	0.00	2.90
4180	8609	2.374830	CTACATCTGCCCCTGAGCGG	62.375	65.000	0.00	0.00	40.71	5.52
4201	8630	1.036481	GGGACGAGGGTGGAGACTAC	61.036	65.000	0.00	0.00	0.00	2.73
4202	8631	1.036481	GGACGAGGGTGGAGACTACC	61.036	65.000	0.00	0.00	37.48	3.18
4203	8632	0.323178	GACGAGGGTGGAGACTACCA	60.323	60.000	6.62	0.00	40.03	3.25
4204	8633	0.113776	ACGAGGGTGGAGACTACCAA	59.886	55.000	6.62	0.00	41.87	3.67
4205	8634	0.531200	CGAGGGTGGAGACTACCAAC	59.469	60.000	6.62	0.00	45.92	3.77
4208	8637	1.595357	GGTGGAGACTACCAACCGG	59.405	63.158	0.00	0.00	41.35	5.28
4209	8638	1.079336	GTGGAGACTACCAACCGGC	60.079	63.158	0.00	0.00	41.87	6.13
4210	8639	2.183555	GGAGACTACCAACCGGCG	59.816	66.667	0.00	0.00	34.57	6.46
4211	8640	2.508663	GAGACTACCAACCGGCGC	60.509	66.667	0.00	0.00	34.57	6.53
4212	8641	4.078516	AGACTACCAACCGGCGCC	62.079	66.667	19.07	19.07	34.57	6.53
4237	8666	4.161295	CTGCGGGATCGGGAGCAA	62.161	66.667	4.96	0.00	39.26	3.91
4238	8667	4.161295	TGCGGGATCGGGAGCAAG	62.161	66.667	1.46	0.00	36.60	4.01
4241	8670	4.162690	GGGATCGGGAGCAAGCGT	62.163	66.667	0.00	0.00	0.00	5.07
4242	8671	2.125106	GGATCGGGAGCAAGCGTT	60.125	61.111	0.00	0.00	0.00	4.84
4243	8672	1.143183	GGATCGGGAGCAAGCGTTA	59.857	57.895	0.00	0.00	0.00	3.18
4244	8673	1.152383	GGATCGGGAGCAAGCGTTAC	61.152	60.000	0.00	0.00	0.00	2.50
4245	8674	1.480219	GATCGGGAGCAAGCGTTACG	61.480	60.000	0.00	0.00	0.00	3.18
4246	8675	2.901051	ATCGGGAGCAAGCGTTACGG	62.901	60.000	6.94	0.00	0.00	4.02
4247	8676	2.263540	GGGAGCAAGCGTTACGGA	59.736	61.111	6.94	0.00	0.00	4.69
4248	8677	1.810030	GGGAGCAAGCGTTACGGAG	60.810	63.158	6.94	0.00	0.00	4.63
4249	8678	2.453638	GGAGCAAGCGTTACGGAGC	61.454	63.158	6.94	0.00	0.00	4.70
4250	8679	2.434359	AGCAAGCGTTACGGAGCC	60.434	61.111	6.94	0.00	0.00	4.70
4251	8680	3.849953	GCAAGCGTTACGGAGCCG	61.850	66.667	6.94	7.48	46.03	5.52
4261	8690	2.513897	CGGAGCCGTGGGATTTCC	60.514	66.667	0.00	0.00	34.35	3.13
4271	8700	3.693411	GGATTTCCCTGCGCCAAA	58.307	55.556	4.18	0.00	0.00	3.28
4272	8701	1.971418	GGATTTCCCTGCGCCAAAA	59.029	52.632	4.18	0.03	0.00	2.44
4273	8702	0.320050	GGATTTCCCTGCGCCAAAAA	59.680	50.000	4.18	0.42	0.00	1.94
4303	8732	4.853924	AAAAAGTTGCATAGGACACTGG	57.146	40.909	0.00	0.00	0.00	4.00
4304	8733	1.826385	AAGTTGCATAGGACACTGGC	58.174	50.000	0.00	0.00	0.00	4.85
4305	8734	0.692476	AGTTGCATAGGACACTGGCA	59.308	50.000	0.00	0.00	36.82	4.92
4306	8735	1.089920	GTTGCATAGGACACTGGCAG	58.910	55.000	14.16	14.16	38.81	4.85
4307	8736	0.035152	TTGCATAGGACACTGGCAGG	60.035	55.000	20.34	10.34	38.81	4.85
4308	8737	0.909133	TGCATAGGACACTGGCAGGA	60.909	55.000	20.34	0.00	34.69	3.86
4309	8738	0.179062	GCATAGGACACTGGCAGGAG	60.179	60.000	20.34	13.35	0.00	3.69
4310	8739	1.489481	CATAGGACACTGGCAGGAGA	58.511	55.000	20.34	0.00	0.00	3.71
4311	8740	1.833630	CATAGGACACTGGCAGGAGAA	59.166	52.381	20.34	0.00	0.00	2.87
4312	8741	1.561643	TAGGACACTGGCAGGAGAAG	58.438	55.000	20.34	5.60	0.00	2.85
4313	8742	1.376553	GGACACTGGCAGGAGAAGC	60.377	63.158	20.34	6.27	0.00	3.86
4314	8743	1.739562	GACACTGGCAGGAGAAGCG	60.740	63.158	20.34	0.53	0.00	4.68
4315	8744	2.435586	CACTGGCAGGAGAAGCGG	60.436	66.667	20.34	0.00	0.00	5.52
4316	8745	4.400961	ACTGGCAGGAGAAGCGGC	62.401	66.667	20.34	0.00	0.00	6.53
4317	8746	4.093291	CTGGCAGGAGAAGCGGCT	62.093	66.667	6.61	0.00	0.00	5.52
4318	8747	4.087892	TGGCAGGAGAAGCGGCTC	62.088	66.667	1.45	0.00	0.00	4.70
4320	8749	4.135153	GCAGGAGAAGCGGCTCGA	62.135	66.667	1.45	0.00	35.74	4.04
4321	8750	2.103934	CAGGAGAAGCGGCTCGAG	59.896	66.667	8.45	8.45	35.74	4.04
4322	8751	3.144193	AGGAGAAGCGGCTCGAGG	61.144	66.667	15.58	0.00	35.74	4.63
4323	8752	3.453679	GGAGAAGCGGCTCGAGGT	61.454	66.667	15.58	0.00	35.74	3.85
4324	8753	2.202676	GAGAAGCGGCTCGAGGTG	60.203	66.667	15.58	0.00	0.00	4.00
4325	8754	4.443266	AGAAGCGGCTCGAGGTGC	62.443	66.667	15.58	0.00	0.00	5.01
4331	8760	4.521062	GGCTCGAGGTGCGCAGAT	62.521	66.667	12.22	0.67	40.61	2.90
4332	8761	2.510238	GCTCGAGGTGCGCAGATT	60.510	61.111	12.22	0.00	40.61	2.40
4333	8762	2.520904	GCTCGAGGTGCGCAGATTC	61.521	63.158	12.22	8.08	40.61	2.52
4334	8763	1.140589	CTCGAGGTGCGCAGATTCT	59.859	57.895	12.22	6.23	40.61	2.40
4335	8764	0.459237	CTCGAGGTGCGCAGATTCTT	60.459	55.000	12.22	0.00	40.61	2.52
4336	8765	0.815095	TCGAGGTGCGCAGATTCTTA	59.185	50.000	12.22	0.00	40.61	2.10
4337	8766	0.924090	CGAGGTGCGCAGATTCTTAC	59.076	55.000	12.22	0.00	0.00	2.34
4338	8767	1.291132	GAGGTGCGCAGATTCTTACC	58.709	55.000	12.22	5.67	0.00	2.85
4339	8768	0.107654	AGGTGCGCAGATTCTTACCC	60.108	55.000	12.22	4.78	0.00	3.69
4340	8769	0.392461	GGTGCGCAGATTCTTACCCA	60.392	55.000	12.22	0.00	0.00	4.51
4341	8770	0.727398	GTGCGCAGATTCTTACCCAC	59.273	55.000	12.22	0.00	0.00	4.61
4342	8771	0.613260	TGCGCAGATTCTTACCCACT	59.387	50.000	5.66	0.00	0.00	4.00
4343	8772	1.009829	GCGCAGATTCTTACCCACTG	58.990	55.000	0.30	0.00	0.00	3.66
4344	8773	1.656652	CGCAGATTCTTACCCACTGG	58.343	55.000	0.00	0.00	37.80	4.00

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	7.335673	TGTGATGTGTTTTTCTGAAACTAGTGA	59.664	33.333	1.58	0.00	0.00	3.41
3	4	7.471721	TGTGATGTGTTTTTCTGAAACTAGTG	58.528	34.615	1.58	0.00	0.00	2.74
4	5	7.336931	ACTGTGATGTGTTTTTCTGAAACTAGT	59.663	33.333	1.58	0.00	0.00	2.57
5	6	7.697691	ACTGTGATGTGTTTTTCTGAAACTAG	58.302	34.615	1.58	0.00	0.00	2.57
7	8	6.515272	ACTGTGATGTGTTTTTCTGAAACT	57.485	33.333	1.58	0.00	0.00	2.66
8	9	7.968405	AGTAACTGTGATGTGTTTTTCTGAAAC	59.032	33.333	1.58	0.00	0.00	2.78
9	10	8.050778	AGTAACTGTGATGTGTTTTTCTGAAA	57.949	30.769	0.00	0.00	0.00	2.69
10	11	7.201696	GGAGTAACTGTGATGTGTTTTTCTGAA	60.202	37.037	0.00	0.00	0.00	3.02
11	12	6.260050	GGAGTAACTGTGATGTGTTTTTCTGA	59.740	38.462	0.00	0.00	0.00	3.27
12	13	6.038161	TGGAGTAACTGTGATGTGTTTTTCTG	59.962	38.462	0.00	0.00	0.00	3.02
13	14	6.119536	TGGAGTAACTGTGATGTGTTTTTCT	58.880	36.000	0.00	0.00	0.00	2.52
14	15	6.371809	TGGAGTAACTGTGATGTGTTTTTC	57.628	37.500	0.00	0.00	0.00	2.29
15	16	6.959639	ATGGAGTAACTGTGATGTGTTTTT	57.040	33.333	0.00	0.00	0.00	1.94
16	17	6.545666	TCAATGGAGTAACTGTGATGTGTTTT	59.454	34.615	0.00	0.00	0.00	2.43
17	18	6.061441	TCAATGGAGTAACTGTGATGTGTTT	58.939	36.000	0.00	0.00	0.00	2.83
18	19	5.620206	TCAATGGAGTAACTGTGATGTGTT	58.380	37.500	0.00	0.00	0.00	3.32
19	20	5.227569	TCAATGGAGTAACTGTGATGTGT	57.772	39.130	0.00	0.00	0.00	3.72
20	21	5.934043	TCTTCAATGGAGTAACTGTGATGTG	59.066	40.000	0.00	0.00	0.00	3.21
21	22	6.114187	TCTTCAATGGAGTAACTGTGATGT	57.886	37.500	0.00	0.00	0.00	3.06
22	23	7.041167	TGTTTCTTCAATGGAGTAACTGTGATG	60.041	37.037	11.47	0.00	0.00	3.07
23	24	6.998074	TGTTTCTTCAATGGAGTAACTGTGAT	59.002	34.615	11.47	0.00	0.00	3.06
24	25	6.353323	TGTTTCTTCAATGGAGTAACTGTGA	58.647	36.000	11.47	0.00	0.00	3.58
25	26	6.618287	TGTTTCTTCAATGGAGTAACTGTG	57.382	37.500	11.47	0.00	0.00	3.66
26	27	7.823745	ATTGTTTCTTCAATGGAGTAACTGT	57.176	32.000	11.47	0.00	36.78	3.55
27	28	9.185192	GAAATTGTTTCTTCAATGGAGTAACTG	57.815	33.333	11.47	0.00	37.96	3.16
28	29	8.076178	CGAAATTGTTTCTTCAATGGAGTAACT	58.924	33.333	11.47	0.00	37.96	2.24
29	30	7.148967	GCGAAATTGTTTCTTCAATGGAGTAAC	60.149	37.037	4.33	4.33	37.96	2.50
30	31	6.861055	GCGAAATTGTTTCTTCAATGGAGTAA	59.139	34.615	0.00	0.00	37.96	2.24
31	32	6.016693	TGCGAAATTGTTTCTTCAATGGAGTA	60.017	34.615	0.00	0.00	37.96	2.59
32	33	5.221224	TGCGAAATTGTTTCTTCAATGGAGT	60.221	36.000	0.00	0.00	37.96	3.85
33	34	5.221880	TGCGAAATTGTTTCTTCAATGGAG	58.778	37.500	0.00	0.00	37.96	3.86
34	35	5.193663	TGCGAAATTGTTTCTTCAATGGA	57.806	34.783	0.00	0.00	37.96	3.41
35	36	5.613142	GCTTGCGAAATTGTTTCTTCAATGG	60.613	40.000	0.00	0.00	37.96	3.16
36	37	5.176223	AGCTTGCGAAATTGTTTCTTCAATG	59.824	36.000	0.00	0.00	37.96	2.82
37	38	5.176223	CAGCTTGCGAAATTGTTTCTTCAAT	59.824	36.000	0.00	0.00	39.35	2.57
38	39	4.503734	CAGCTTGCGAAATTGTTTCTTCAA	59.496	37.500	0.00	4.61	37.52	2.69
39	40	4.043750	CAGCTTGCGAAATTGTTTCTTCA	58.956	39.130	0.00	0.00	37.52	3.02
40	41	3.426525	CCAGCTTGCGAAATTGTTTCTTC	59.573	43.478	0.00	0.00	37.52	2.87
41	42	3.068024	TCCAGCTTGCGAAATTGTTTCTT	59.932	39.130	0.00	0.00	37.52	2.52
42	43	2.622942	TCCAGCTTGCGAAATTGTTTCT	59.377	40.909	0.00	0.00	37.52	2.52
43	44	3.011949	TCCAGCTTGCGAAATTGTTTC	57.988	42.857	0.00	0.00	36.32	2.78
44	45	3.451141	TTCCAGCTTGCGAAATTGTTT	57.549	38.095	0.00	0.00	0.00	2.83
45	46	3.665745	ATTCCAGCTTGCGAAATTGTT	57.334	38.095	0.00	0.00	0.00	2.83
46	47	4.398988	TCATATTCCAGCTTGCGAAATTGT	59.601	37.500	0.00	0.00	0.00	2.71
47	48	4.923893	TCATATTCCAGCTTGCGAAATTG	58.076	39.130	0.00	0.00	0.00	2.32
48	49	5.581126	TTCATATTCCAGCTTGCGAAATT	57.419	34.783	0.00	0.00	0.00	1.82
49	50	5.126061	AGTTTCATATTCCAGCTTGCGAAAT	59.874	36.000	0.00	0.00	0.00	2.17
50	51	4.458989	AGTTTCATATTCCAGCTTGCGAAA	59.541	37.500	0.00	0.00	0.00	3.46
51	52	4.009675	AGTTTCATATTCCAGCTTGCGAA	58.990	39.130	0.00	0.00	0.00	4.70
52	53	3.609853	AGTTTCATATTCCAGCTTGCGA	58.390	40.909	0.00	0.00	0.00	5.10
53	54	3.374988	TGAGTTTCATATTCCAGCTTGCG	59.625	43.478	0.00	0.00	0.00	4.85
54	55	4.156556	TGTGAGTTTCATATTCCAGCTTGC	59.843	41.667	0.00	0.00	0.00	4.01
55	56	5.885230	TGTGAGTTTCATATTCCAGCTTG	57.115	39.130	0.00	0.00	0.00	4.01
56	57	6.716628	TCTTTGTGAGTTTCATATTCCAGCTT	59.283	34.615	0.00	0.00	0.00	3.74
57	58	6.240894	TCTTTGTGAGTTTCATATTCCAGCT	58.759	36.000	0.00	0.00	0.00	4.24
58	59	6.500684	TCTTTGTGAGTTTCATATTCCAGC	57.499	37.500	0.00	0.00	0.00	4.85
59	60	9.185192	GTTTTCTTTGTGAGTTTCATATTCCAG	57.815	33.333	0.00	0.00	0.00	3.86
60	61	8.912988	AGTTTTCTTTGTGAGTTTCATATTCCA	58.087	29.630	0.00	0.00	0.00	3.53
190	191	9.232473	GATGGTCTTCTCTTGGTTAATTTTACT	57.768	33.333	0.00	0.00	0.00	2.24
191	192	9.010029	TGATGGTCTTCTCTTGGTTAATTTTAC	57.990	33.333	0.00	0.00	0.00	2.01
192	193	9.010029	GTGATGGTCTTCTCTTGGTTAATTTTA	57.990	33.333	0.00	0.00	0.00	1.52
193	194	7.039714	GGTGATGGTCTTCTCTTGGTTAATTTT	60.040	37.037	0.00	0.00	0.00	1.82
194	195	6.434340	GGTGATGGTCTTCTCTTGGTTAATTT	59.566	38.462	0.00	0.00	0.00	1.82
195	196	5.946377	GGTGATGGTCTTCTCTTGGTTAATT	59.054	40.000	0.00	0.00	0.00	1.40
196	197	5.501156	GGTGATGGTCTTCTCTTGGTTAAT	58.499	41.667	0.00	0.00	0.00	1.40
197	198	4.562757	CGGTGATGGTCTTCTCTTGGTTAA	60.563	45.833	0.00	0.00	0.00	2.01
198	199	3.056107	CGGTGATGGTCTTCTCTTGGTTA	60.056	47.826	0.00	0.00	0.00	2.85
199	200	2.289694	CGGTGATGGTCTTCTCTTGGTT	60.290	50.000	0.00	0.00	0.00	3.67
200	201	1.276421	CGGTGATGGTCTTCTCTTGGT	59.724	52.381	0.00	0.00	0.00	3.67
201	202	1.550524	TCGGTGATGGTCTTCTCTTGG	59.449	52.381	0.00	0.00	0.00	3.61
202	203	3.319137	TTCGGTGATGGTCTTCTCTTG	57.681	47.619	0.00	0.00	0.00	3.02
203	204	4.020218	TCATTTCGGTGATGGTCTTCTCTT	60.020	41.667	0.00	0.00	0.00	2.85
204	205	3.515502	TCATTTCGGTGATGGTCTTCTCT	59.484	43.478	0.00	0.00	0.00	3.10
205	206	3.619038	GTCATTTCGGTGATGGTCTTCTC	59.381	47.826	0.00	0.00	0.00	2.87
206	207	3.007940	TGTCATTTCGGTGATGGTCTTCT	59.992	43.478	0.00	0.00	0.00	2.85
207	208	3.334691	TGTCATTTCGGTGATGGTCTTC	58.665	45.455	0.00	0.00	0.00	2.87
208	209	3.417069	TGTCATTTCGGTGATGGTCTT	57.583	42.857	0.00	0.00	0.00	3.01
209	210	3.417069	TTGTCATTTCGGTGATGGTCT	57.583	42.857	0.00	0.00	0.00	3.85
210	211	4.497473	TTTTGTCATTTCGGTGATGGTC	57.503	40.909	0.00	0.00	0.00	4.02
211	212	4.927978	TTTTTGTCATTTCGGTGATGGT	57.072	36.364	0.00	0.00	0.00	3.55
212	213	7.148656	GGTTTATTTTTGTCATTTCGGTGATGG	60.149	37.037	0.00	0.00	0.00	3.51
213	214	7.410300	CGGTTTATTTTTGTCATTTCGGTGATG	60.410	37.037	0.00	0.00	0.00	3.07
214	215	6.584563	CGGTTTATTTTTGTCATTTCGGTGAT	59.415	34.615	0.00	0.00	0.00	3.06
215	216	5.915758	CGGTTTATTTTTGTCATTTCGGTGA	59.084	36.000	0.00	0.00	0.00	4.02
216	217	5.915758	TCGGTTTATTTTTGTCATTTCGGTG	59.084	36.000	0.00	0.00	0.00	4.94
217	218	6.074544	TCGGTTTATTTTTGTCATTTCGGT	57.925	33.333	0.00	0.00	0.00	4.69
218	219	6.088883	CCTTCGGTTTATTTTTGTCATTTCGG	59.911	38.462	0.00	0.00	0.00	4.30
219	220	6.858993	TCCTTCGGTTTATTTTTGTCATTTCG	59.141	34.615	0.00	0.00	0.00	3.46
220	221	8.484799	GTTCCTTCGGTTTATTTTTGTCATTTC	58.515	33.333	0.00	0.00	0.00	2.17
221	222	7.168469	CGTTCCTTCGGTTTATTTTTGTCATTT	59.832	33.333	0.00	0.00	0.00	2.32
222	223	6.639279	CGTTCCTTCGGTTTATTTTTGTCATT	59.361	34.615	0.00	0.00	0.00	2.57
223	224	6.146898	CGTTCCTTCGGTTTATTTTTGTCAT	58.853	36.000	0.00	0.00	0.00	3.06
224	225	5.512473	CGTTCCTTCGGTTTATTTTTGTCA	58.488	37.500	0.00	0.00	0.00	3.58
225	226	4.380678	GCGTTCCTTCGGTTTATTTTTGTC	59.619	41.667	0.00	0.00	0.00	3.18
226	227	4.202030	TGCGTTCCTTCGGTTTATTTTTGT	60.202	37.500	0.00	0.00	0.00	2.83
227	228	4.147479	GTGCGTTCCTTCGGTTTATTTTTG	59.853	41.667	0.00	0.00	0.00	2.44
228	229	4.292599	GTGCGTTCCTTCGGTTTATTTTT	58.707	39.130	0.00	0.00	0.00	1.94
229	230	3.607542	CGTGCGTTCCTTCGGTTTATTTT	60.608	43.478	0.00	0.00	0.00	1.82
230	231	2.096119	CGTGCGTTCCTTCGGTTTATTT	60.096	45.455	0.00	0.00	0.00	1.40
231	232	1.461897	CGTGCGTTCCTTCGGTTTATT	59.538	47.619	0.00	0.00	0.00	1.40
232	233	1.073177	CGTGCGTTCCTTCGGTTTAT	58.927	50.000	0.00	0.00	0.00	1.40
233	234	0.249405	ACGTGCGTTCCTTCGGTTTA	60.249	50.000	0.00	0.00	0.00	2.01
234	235	1.522130	ACGTGCGTTCCTTCGGTTT	60.522	52.632	0.00	0.00	0.00	3.27
235	236	2.107546	ACGTGCGTTCCTTCGGTT	59.892	55.556	0.00	0.00	0.00	4.44
236	237	2.660552	CACGTGCGTTCCTTCGGT	60.661	61.111	0.82	0.00	0.00	4.69
237	238	4.072088	GCACGTGCGTTCCTTCGG	62.072	66.667	26.77	0.00	0.00	4.30
247	248	0.640768	CGCTCTTAGTTAGCACGTGC	59.359	55.000	32.79	32.79	40.08	5.34
248	249	0.640768	GCGCTCTTAGTTAGCACGTG	59.359	55.000	12.28	12.28	40.08	4.49
249	250	0.526662	AGCGCTCTTAGTTAGCACGT	59.473	50.000	2.64	0.00	40.08	4.49
250	251	1.192793	GAGCGCTCTTAGTTAGCACG	58.807	55.000	29.88	0.00	40.08	5.34
251	252	1.921230	GTGAGCGCTCTTAGTTAGCAC	59.079	52.381	35.27	19.85	40.08	4.40
252	253	1.135083	GGTGAGCGCTCTTAGTTAGCA	60.135	52.381	35.27	12.21	40.08	3.49
253	254	1.562017	GGTGAGCGCTCTTAGTTAGC	58.438	55.000	35.27	20.82	36.60	3.09
254	255	1.400846	TCGGTGAGCGCTCTTAGTTAG	59.599	52.381	35.27	19.54	0.00	2.34
255	256	1.456296	TCGGTGAGCGCTCTTAGTTA	58.544	50.000	35.27	13.88	0.00	2.24
256	257	0.601558	TTCGGTGAGCGCTCTTAGTT	59.398	50.000	35.27	0.00	0.00	2.24
257	258	0.109226	GTTCGGTGAGCGCTCTTAGT	60.109	55.000	35.27	0.52	0.00	2.24
258	259	0.171455	AGTTCGGTGAGCGCTCTTAG	59.829	55.000	35.27	24.96	0.00	2.18
259	260	1.400846	CTAGTTCGGTGAGCGCTCTTA	59.599	52.381	35.27	16.24	0.00	2.10
260	261	0.171455	CTAGTTCGGTGAGCGCTCTT	59.829	55.000	35.27	15.43	0.00	2.85
261	262	1.658686	CCTAGTTCGGTGAGCGCTCT	61.659	60.000	35.27	17.68	0.00	4.09
262	263	1.226717	CCTAGTTCGGTGAGCGCTC	60.227	63.158	30.42	30.42	0.00	5.03
263	264	2.885861	CCTAGTTCGGTGAGCGCT	59.114	61.111	11.27	11.27	0.00	5.92
264	265	2.886124	GCCTAGTTCGGTGAGCGC	60.886	66.667	0.00	0.00	0.00	5.92
265	266	2.202756	GGCCTAGTTCGGTGAGCG	60.203	66.667	0.00	0.00	0.00	5.03
266	267	2.202756	CGGCCTAGTTCGGTGAGC	60.203	66.667	0.00	0.00	0.00	4.26
267	268	1.433879	CTCGGCCTAGTTCGGTGAG	59.566	63.158	0.00	0.00	0.00	3.51
268	269	2.707849	GCTCGGCCTAGTTCGGTGA	61.708	63.158	6.11	0.00	0.00	4.02
269	270	2.202756	GCTCGGCCTAGTTCGGTG	60.203	66.667	6.11	0.00	0.00	4.94
270	271	3.459063	GGCTCGGCCTAGTTCGGT	61.459	66.667	6.11	0.00	46.69	4.69
280	281	2.563427	GTGCTTTTCTGGCTCGGC	59.437	61.111	0.00	0.00	0.00	5.54
281	282	2.863153	CGTGCTTTTCTGGCTCGG	59.137	61.111	0.00	0.00	41.11	4.63
282	283	2.174349	GCGTGCTTTTCTGGCTCG	59.826	61.111	0.00	0.00	45.40	5.03
283	284	0.673644	TAGGCGTGCTTTTCTGGCTC	60.674	55.000	0.00	0.00	38.31	4.70
284	285	0.035056	ATAGGCGTGCTTTTCTGGCT	60.035	50.000	0.00	0.00	40.61	4.75
285	286	0.811281	AATAGGCGTGCTTTTCTGGC	59.189	50.000	0.00	0.00	0.00	4.85
286	287	2.487762	TCAAATAGGCGTGCTTTTCTGG	59.512	45.455	0.00	0.00	0.00	3.86
287	288	3.426695	CCTCAAATAGGCGTGCTTTTCTG	60.427	47.826	0.00	0.00	38.97	3.02
288	289	2.749621	CCTCAAATAGGCGTGCTTTTCT	59.250	45.455	0.00	0.00	38.97	2.52
289	290	3.136808	CCTCAAATAGGCGTGCTTTTC	57.863	47.619	0.00	0.00	38.97	2.29
300	301	2.952310	GGCCCTTTACTGCCTCAAATAG	59.048	50.000	0.00	0.00	44.46	1.73
301	302	3.012934	GGCCCTTTACTGCCTCAAATA	57.987	47.619	0.00	0.00	44.46	1.40
302	303	1.852633	GGCCCTTTACTGCCTCAAAT	58.147	50.000	0.00	0.00	44.46	2.32
303	304	3.356814	GGCCCTTTACTGCCTCAAA	57.643	52.632	0.00	0.00	44.46	2.69
309	310	1.745489	CCTCGTGGCCCTTTACTGC	60.745	63.158	0.00	0.00	0.00	4.40
310	311	0.108138	CTCCTCGTGGCCCTTTACTG	60.108	60.000	0.00	0.00	0.00	2.74
311	312	1.900545	GCTCCTCGTGGCCCTTTACT	61.901	60.000	0.00	0.00	0.00	2.24
312	313	1.449778	GCTCCTCGTGGCCCTTTAC	60.450	63.158	0.00	0.00	0.00	2.01
313	314	1.612442	AGCTCCTCGTGGCCCTTTA	60.612	57.895	0.00	0.00	0.00	1.85
314	315	2.930562	AGCTCCTCGTGGCCCTTT	60.931	61.111	0.00	0.00	0.00	3.11
315	316	3.710722	CAGCTCCTCGTGGCCCTT	61.711	66.667	0.00	0.00	0.00	3.95
317	318	4.459089	GACAGCTCCTCGTGGCCC	62.459	72.222	0.00	0.00	0.00	5.80
318	319	4.803426	CGACAGCTCCTCGTGGCC	62.803	72.222	0.00	0.00	0.00	5.36
319	320	2.564553	AATCGACAGCTCCTCGTGGC	62.565	60.000	9.57	0.00	32.77	5.01
320	321	0.108615	AAATCGACAGCTCCTCGTGG	60.109	55.000	9.57	0.00	32.77	4.94
321	322	1.714794	AAAATCGACAGCTCCTCGTG	58.285	50.000	9.57	0.00	32.77	4.35
322	323	2.457366	AAAAATCGACAGCTCCTCGT	57.543	45.000	9.57	0.00	32.77	4.18
323	324	2.282820	GCTAAAAATCGACAGCTCCTCG	59.717	50.000	4.24	4.24	0.00	4.63
324	325	3.526534	AGCTAAAAATCGACAGCTCCTC	58.473	45.455	0.00	0.00	40.25	3.71
325	326	3.618690	AGCTAAAAATCGACAGCTCCT	57.381	42.857	0.00	0.00	40.25	3.69
326	327	4.181578	TGTAGCTAAAAATCGACAGCTCC	58.818	43.478	9.68	1.93	43.14	4.70
327	328	5.382573	CTGTAGCTAAAAATCGACAGCTC	57.617	43.478	9.68	4.85	43.14	4.09
330	331	3.857665	TCGCTGTAGCTAAAAATCGACAG	59.142	43.478	0.00	0.00	38.44	3.51
331	332	3.840468	TCGCTGTAGCTAAAAATCGACA	58.160	40.909	0.00	0.00	39.32	4.35
332	333	3.858238	ACTCGCTGTAGCTAAAAATCGAC	59.142	43.478	0.00	0.00	39.32	4.20
333	334	3.857665	CACTCGCTGTAGCTAAAAATCGA	59.142	43.478	0.00	0.00	39.32	3.59
334	335	3.612860	ACACTCGCTGTAGCTAAAAATCG	59.387	43.478	0.00	0.00	39.32	3.34
335	336	6.262323	CTACACTCGCTGTAGCTAAAAATC	57.738	41.667	0.00	0.00	44.71	2.17
345	346	1.868987	TTGCCGCTACACTCGCTGTA	61.869	55.000	0.00	0.00	33.91	2.74
346	347	3.220999	TTGCCGCTACACTCGCTGT	62.221	57.895	0.00	0.00	36.82	4.40
347	348	2.432456	TTGCCGCTACACTCGCTG	60.432	61.111	0.00	0.00	0.00	5.18
348	349	2.125912	CTTGCCGCTACACTCGCT	60.126	61.111	0.00	0.00	0.00	4.93
349	350	3.854459	GCTTGCCGCTACACTCGC	61.854	66.667	0.00	0.00	35.14	5.03
350	351	3.188786	GGCTTGCCGCTACACTCG	61.189	66.667	0.00	0.00	39.13	4.18
351	352	1.671054	TTGGCTTGCCGCTACACTC	60.671	57.895	7.18	0.00	39.13	3.51
352	353	1.966451	GTTGGCTTGCCGCTACACT	60.966	57.895	7.18	0.00	39.13	3.55
353	354	1.791103	TTGTTGGCTTGCCGCTACAC	61.791	55.000	7.18	0.00	39.13	2.90
354	355	1.527148	TTGTTGGCTTGCCGCTACA	60.527	52.632	7.18	8.28	39.13	2.74
355	356	1.081442	GTTGTTGGCTTGCCGCTAC	60.081	57.895	7.18	5.90	39.13	3.58
356	357	2.612567	CGTTGTTGGCTTGCCGCTA	61.613	57.895	7.18	0.00	39.13	4.26
357	358	3.964875	CGTTGTTGGCTTGCCGCT	61.965	61.111	7.18	0.00	39.13	5.52
358	359	4.999939	CCGTTGTTGGCTTGCCGC	63.000	66.667	7.18	3.37	38.13	6.53
420	421	1.134580	ACTCACTCATCATTGCCGGAG	60.135	52.381	5.05	0.00	0.00	4.63
446	448	2.774234	ACCCGACCTCTGATGAATGATT	59.226	45.455	0.00	0.00	0.00	2.57
451	453	0.036388	GCAACCCGACCTCTGATGAA	60.036	55.000	0.00	0.00	0.00	2.57
464	466	1.362355	CTGACGGTTTTGGCAACCC	59.638	57.895	0.00	1.82	36.99	4.11
475	477	0.108585	AAACAGCCATGACTGACGGT	59.891	50.000	16.61	0.00	40.25	4.83
479	481	4.644234	TGAAAAGAAAACAGCCATGACTGA	59.356	37.500	16.61	0.00	40.25	3.41
481	483	5.596836	TTGAAAAGAAAACAGCCATGACT	57.403	34.783	0.00	0.00	0.00	3.41
482	484	5.117592	CGATTGAAAAGAAAACAGCCATGAC	59.882	40.000	0.00	0.00	0.00	3.06
483	485	5.009510	TCGATTGAAAAGAAAACAGCCATGA	59.990	36.000	0.00	0.00	0.00	3.07
484	486	5.221880	TCGATTGAAAAGAAAACAGCCATG	58.778	37.500	0.00	0.00	0.00	3.66
485	487	5.452078	TCGATTGAAAAGAAAACAGCCAT	57.548	34.783	0.00	0.00	0.00	4.40
486	488	4.909696	TCGATTGAAAAGAAAACAGCCA	57.090	36.364	0.00	0.00	0.00	4.75
487	489	4.148871	GCTTCGATTGAAAAGAAAACAGCC	59.851	41.667	0.00	0.00	32.66	4.85
488	490	4.978580	AGCTTCGATTGAAAAGAAAACAGC	59.021	37.500	0.00	0.00	32.66	4.40
492	494	6.373779	CAGCTAGCTTCGATTGAAAAGAAAA	58.626	36.000	16.46	0.00	32.66	2.29
502	504	1.227380	CGGGCAGCTAGCTTCGATT	60.227	57.895	16.46	0.00	44.79	3.34
564	566	8.397906	CCAAGGATTGTTTTTCTTTTTCTTTCC	58.602	33.333	0.00	0.00	46.99	3.13
575	577	5.745312	AAGGGATCCAAGGATTGTTTTTC	57.255	39.130	15.23	0.00	46.99	2.29
576	578	5.606329	TCAAAGGGATCCAAGGATTGTTTTT	59.394	36.000	15.23	0.66	46.99	1.94
642	654	1.742880	GCGCTGAGCATCACTTGGA	60.743	57.895	4.88	0.00	42.56	3.53
659	671	4.037089	TGGTATTCTTGATCACATGCATGC	59.963	41.667	26.53	11.82	0.00	4.06
700	712	9.860650	ACCACTTGAATGCCTTTTGTATATATA	57.139	29.630	0.00	0.00	0.00	0.86
701	713	8.766994	ACCACTTGAATGCCTTTTGTATATAT	57.233	30.769	0.00	0.00	0.00	0.86
713	725	4.338400	GGAAAGGTATACCACTTGAATGCC	59.662	45.833	23.87	9.46	38.89	4.40
714	726	4.947388	TGGAAAGGTATACCACTTGAATGC	59.053	41.667	23.87	7.26	38.89	3.56
723	735	3.074687	TGCCAAAGTGGAAAGGTATACCA	59.925	43.478	23.87	0.00	40.96	3.25
724	736	3.442625	GTGCCAAAGTGGAAAGGTATACC	59.557	47.826	14.54	14.54	40.96	2.73
725	737	4.076394	TGTGCCAAAGTGGAAAGGTATAC	58.924	43.478	0.00	0.00	40.96	1.47
726	738	4.374689	TGTGCCAAAGTGGAAAGGTATA	57.625	40.909	0.00	0.00	40.96	1.47
727	739	3.237268	TGTGCCAAAGTGGAAAGGTAT	57.763	42.857	0.00	0.00	40.96	2.73
728	740	2.738587	TGTGCCAAAGTGGAAAGGTA	57.261	45.000	0.00	0.00	40.96	3.08
730	742	3.157087	AGTATGTGCCAAAGTGGAAAGG	58.843	45.455	0.00	0.00	40.96	3.11
731	743	3.191371	GGAGTATGTGCCAAAGTGGAAAG	59.809	47.826	0.00	0.00	40.96	2.62
732	744	3.153919	GGAGTATGTGCCAAAGTGGAAA	58.846	45.455	0.00	0.00	40.96	3.13
733	745	2.107378	TGGAGTATGTGCCAAAGTGGAA	59.893	45.455	0.00	0.00	40.96	3.53
734	746	1.702401	TGGAGTATGTGCCAAAGTGGA	59.298	47.619	0.00	0.00	40.96	4.02
735	747	1.812571	GTGGAGTATGTGCCAAAGTGG	59.187	52.381	0.00	0.00	41.55	4.00
736	748	2.503331	TGTGGAGTATGTGCCAAAGTG	58.497	47.619	0.00	0.00	35.63	3.16
737	749	2.949177	TGTGGAGTATGTGCCAAAGT	57.051	45.000	0.00	0.00	35.63	2.66
738	750	3.305335	GGTTTGTGGAGTATGTGCCAAAG	60.305	47.826	0.00	0.00	35.63	2.77
739	751	2.625790	GGTTTGTGGAGTATGTGCCAAA	59.374	45.455	0.00	0.00	35.63	3.28
740	752	2.235016	GGTTTGTGGAGTATGTGCCAA	58.765	47.619	0.00	0.00	35.63	4.52
741	753	1.880221	CGGTTTGTGGAGTATGTGCCA	60.880	52.381	0.00	0.00	0.00	4.92
742	754	0.802494	CGGTTTGTGGAGTATGTGCC	59.198	55.000	0.00	0.00	0.00	5.01
743	755	1.732259	CTCGGTTTGTGGAGTATGTGC	59.268	52.381	0.00	0.00	0.00	4.57
744	756	2.736721	CACTCGGTTTGTGGAGTATGTG	59.263	50.000	0.00	0.00	41.37	3.21
745	757	2.631062	TCACTCGGTTTGTGGAGTATGT	59.369	45.455	0.00	0.00	41.37	2.29
746	758	3.254060	CTCACTCGGTTTGTGGAGTATG	58.746	50.000	0.00	0.00	41.37	2.39
747	759	2.353803	GCTCACTCGGTTTGTGGAGTAT	60.354	50.000	0.00	0.00	41.37	2.12
748	760	1.000506	GCTCACTCGGTTTGTGGAGTA	59.999	52.381	0.00	0.00	41.37	2.59
749	761	0.249911	GCTCACTCGGTTTGTGGAGT	60.250	55.000	0.00	0.00	43.99	3.85
750	762	0.249868	TGCTCACTCGGTTTGTGGAG	60.250	55.000	0.00	0.00	36.21	3.86
751	763	0.179234	TTGCTCACTCGGTTTGTGGA	59.821	50.000	0.00	0.00	36.21	4.02
752	764	1.021202	TTTGCTCACTCGGTTTGTGG	58.979	50.000	0.00	0.00	36.21	4.17
753	765	2.549754	AGATTTGCTCACTCGGTTTGTG	59.450	45.455	0.00	0.00	36.82	3.33
754	766	2.851195	AGATTTGCTCACTCGGTTTGT	58.149	42.857	0.00	0.00	0.00	2.83
811	827	3.612919	CGTATGGGACGCATCACG	58.387	61.111	8.47	12.60	46.27	4.35
819	835	2.607282	CCGAGATAGCAACGTATGGGAC	60.607	54.545	0.00	0.00	0.00	4.46
822	1017	1.419374	GCCGAGATAGCAACGTATGG	58.581	55.000	0.00	0.00	0.00	2.74
834	1029	0.536724	TATATGCATGCGGCCGAGAT	59.463	50.000	33.48	17.46	43.89	2.75
844	1039	7.429374	TCTTTCCCTCCTCTATATATGCATG	57.571	40.000	10.16	0.00	0.00	4.06
929	1128	6.238320	CCAGCTGATGATTTAACTACAGAAGC	60.238	42.308	17.39	0.00	0.00	3.86
930	1129	6.820656	ACCAGCTGATGATTTAACTACAGAAG	59.179	38.462	17.39	0.00	0.00	2.85
931	1130	6.711277	ACCAGCTGATGATTTAACTACAGAA	58.289	36.000	17.39	0.00	0.00	3.02
932	1131	6.299805	ACCAGCTGATGATTTAACTACAGA	57.700	37.500	17.39	0.00	0.00	3.41
933	1132	6.676456	GCAACCAGCTGATGATTTAACTACAG	60.676	42.308	17.39	0.00	41.15	2.74
934	1133	5.123820	GCAACCAGCTGATGATTTAACTACA	59.876	40.000	17.39	0.00	41.15	2.74
935	1134	5.449177	GGCAACCAGCTGATGATTTAACTAC	60.449	44.000	17.39	0.00	44.79	2.73
936	1135	4.640201	GGCAACCAGCTGATGATTTAACTA	59.360	41.667	17.39	0.00	44.79	2.24
937	1136	3.445096	GGCAACCAGCTGATGATTTAACT	59.555	43.478	17.39	0.00	44.79	2.24
938	1137	3.193267	TGGCAACCAGCTGATGATTTAAC	59.807	43.478	17.39	0.10	44.79	2.01
939	1138	3.429492	TGGCAACCAGCTGATGATTTAA	58.571	40.909	17.39	0.00	44.79	1.52
940	1139	3.018856	CTGGCAACCAGCTGATGATTTA	58.981	45.455	17.39	1.15	45.13	1.40
941	1140	1.822990	CTGGCAACCAGCTGATGATTT	59.177	47.619	17.39	0.00	45.13	2.17
942	1141	1.471119	CTGGCAACCAGCTGATGATT	58.529	50.000	17.39	0.66	45.13	2.57
958	1157	1.284982	CTGCCGACTGACGTTTCTGG	61.285	60.000	0.00	0.00	40.78	3.86
961	1160	2.668280	GCCTGCCGACTGACGTTTC	61.668	63.158	0.00	0.00	40.78	2.78
995	1199	3.213206	AGAAGGCAGTCAACATGTTGA	57.787	42.857	32.36	32.36	46.27	3.18
999	1203	1.884579	AGCAAGAAGGCAGTCAACATG	59.115	47.619	0.00	0.00	35.83	3.21
1057	1261	4.933064	CTCGGGCGTCTCGATGGC	62.933	72.222	2.39	4.27	41.61	4.40
1084	1288	3.573772	CTTGACAGCCACGAGCCGA	62.574	63.158	1.50	0.00	45.47	5.54
1085	1289	3.114616	CTTGACAGCCACGAGCCG	61.115	66.667	0.00	0.00	45.47	5.52
1612	1847	0.942962	GCTGTAGTCCATCATGCTGC	59.057	55.000	0.00	0.00	0.00	5.25
1659	1894	0.389426	CGGAAGGTGTAGTTGGTCCG	60.389	60.000	0.00	0.00	41.71	4.79
1790	2034	1.272490	CAGGCGTACTTCTTGGTCTCA	59.728	52.381	0.00	0.00	0.00	3.27
1791	2035	1.997669	CAGGCGTACTTCTTGGTCTC	58.002	55.000	0.00	0.00	0.00	3.36
1800	2044	2.266055	GCTCAGGCAGGCGTACTT	59.734	61.111	0.00	0.00	38.54	2.24
1892	2136	2.881539	ATCCGTCGACGAGGTAGGCA	62.882	60.000	37.65	11.81	43.02	4.75
2007	2820	4.687483	CACATTCATCTATATCTGTGCGCA	59.313	41.667	5.66	5.66	0.00	6.09
2204	3115	9.421806	GACTCTCAGATCCAACATCTAATATTG	57.578	37.037	0.00	0.00	0.00	1.90
2205	3116	9.378504	AGACTCTCAGATCCAACATCTAATATT	57.621	33.333	0.00	0.00	0.00	1.28
2206	3117	8.805175	CAGACTCTCAGATCCAACATCTAATAT	58.195	37.037	0.00	0.00	0.00	1.28
2208	3119	6.838090	TCAGACTCTCAGATCCAACATCTAAT	59.162	38.462	0.00	0.00	0.00	1.73
2212	3490	4.644234	TCTCAGACTCTCAGATCCAACATC	59.356	45.833	0.00	0.00	0.00	3.06
2218	3496	2.354510	CGTGTCTCAGACTCTCAGATCC	59.645	54.545	6.33	0.00	33.15	3.36
2228	3506	7.763172	AATTGAAGATAATCGTGTCTCAGAC	57.237	36.000	0.00	0.00	0.00	3.51
2237	3515	8.391106	GCAAGTACTGAAATTGAAGATAATCGT	58.609	33.333	0.00	0.00	0.00	3.73
2245	6608	6.805271	CAGGATTGCAAGTACTGAAATTGAAG	59.195	38.462	17.91	0.00	32.90	3.02
2259	6622	2.295349	AGCACTGAAACAGGATTGCAAG	59.705	45.455	4.94	0.00	34.74	4.01
2262	6625	2.352127	GGAAGCACTGAAACAGGATTGC	60.352	50.000	0.00	0.00	35.51	3.56
2267	6630	1.151668	CTCGGAAGCACTGAAACAGG	58.848	55.000	0.00	0.00	35.51	4.00
2283	6661	2.496070	TGGAGTTTACTCATCCCACTCG	59.504	50.000	11.67	0.00	44.60	4.18
2284	6662	3.515901	AGTGGAGTTTACTCATCCCACTC	59.484	47.826	12.68	0.00	44.60	3.51
2289	6667	6.879400	AGTCAATAGTGGAGTTTACTCATCC	58.121	40.000	11.67	0.00	44.60	3.51
2290	6668	8.904834	TCTAGTCAATAGTGGAGTTTACTCATC	58.095	37.037	11.67	4.33	37.46	2.92
2291	6669	8.824756	TCTAGTCAATAGTGGAGTTTACTCAT	57.175	34.615	11.67	0.54	37.46	2.90
2323	6718	9.642312	CAAAGGTAAACGAAAACTTCTTACTAC	57.358	33.333	0.00	0.00	0.00	2.73
2326	6730	7.191551	AGCAAAGGTAAACGAAAACTTCTTAC	58.808	34.615	0.00	0.00	0.00	2.34
2333	6737	6.309494	ACAAAGAAGCAAAGGTAAACGAAAAC	59.691	34.615	0.00	0.00	0.00	2.43
2338	6742	3.485743	GCACAAAGAAGCAAAGGTAAACG	59.514	43.478	0.00	0.00	0.00	3.60
2707	7122	1.156736	CCACTTCTAGGCAACAACCG	58.843	55.000	0.00	0.00	41.41	4.44
2812	7233	2.751166	AGACAATGCTTAGACGCACT	57.249	45.000	0.00	0.00	43.61	4.40
2858	7279	1.824230	GGTATGGGCTTGTGAATGCAA	59.176	47.619	0.00	0.00	0.00	4.08
3154	7576	4.993705	TTCCTTCTTTGTGGTACTGGAT	57.006	40.909	0.00	0.00	0.00	3.41
3157	7579	6.693315	TTTCTTTCCTTCTTTGTGGTACTG	57.307	37.500	0.00	0.00	0.00	2.74
3161	7583	4.023291	TGCTTTCTTTCCTTCTTTGTGGT	58.977	39.130	0.00	0.00	0.00	4.16
3226	7648	1.728971	CGCCAGAGTAACAAGAAGCTG	59.271	52.381	0.00	0.00	0.00	4.24
3246	7668	1.017387	GACATTCCACAGCGATTCCC	58.983	55.000	0.00	0.00	0.00	3.97
3293	7715	1.626654	CGCCACAACGTCTGTCATCC	61.627	60.000	0.00	0.00	35.47	3.51
3327	7749	7.724305	AAGTTACAACACACGTGATCTATTT	57.276	32.000	25.01	2.53	0.00	1.40
3422	7844	3.256558	GCTGTGGGAAGAAATTTGATGC	58.743	45.455	0.00	0.00	0.00	3.91
3427	7849	3.494924	GGCTTTGCTGTGGGAAGAAATTT	60.495	43.478	0.00	0.00	0.00	1.82
3441	7863	0.680280	CCATGCTCTCTGGCTTTGCT	60.680	55.000	0.00	0.00	0.00	3.91
3477	7899	5.760743	GCTTCTCATACAATAAGGGAAGGTC	59.239	44.000	0.00	0.00	32.18	3.85
3533	7955	6.256757	CAGTTACTCCCTACAGTACTACGTAC	59.743	46.154	0.00	0.00	39.10	3.67
3534	7956	6.070767	ACAGTTACTCCCTACAGTACTACGTA	60.071	42.308	0.00	0.00	0.00	3.57
3535	7957	5.181748	CAGTTACTCCCTACAGTACTACGT	58.818	45.833	0.00	0.00	0.00	3.57
3536	7958	5.064452	CACAGTTACTCCCTACAGTACTACG	59.936	48.000	0.00	0.00	0.00	3.51
3549	7971	4.574828	ACATGAAACACACACAGTTACTCC	59.425	41.667	0.00	0.00	0.00	3.85
3585	8007	5.977635	CAGATTGGGACACATTCTGTACTA	58.022	41.667	17.72	0.00	45.68	1.82
3592	8014	1.106285	GGGCAGATTGGGACACATTC	58.894	55.000	0.00	0.00	39.29	2.67
3645	8068	3.010200	AGAAAGCATAGGGAAAGCAGG	57.990	47.619	0.00	0.00	0.00	4.85
3657	8080	2.893489	GTTGACAGGGGAAAGAAAGCAT	59.107	45.455	0.00	0.00	0.00	3.79
3674	8097	6.322969	TGAGTAACCTGTAACTCTCAAGTTGA	59.677	38.462	5.25	5.25	45.37	3.18
3682	8105	7.990886	TCAACATTTTGAGTAACCTGTAACTCT	59.009	33.333	4.32	0.00	42.17	3.24
3698	8121	7.592533	CACTAGTCCACTCAATTCAACATTTTG	59.407	37.037	0.00	0.00	0.00	2.44
3708	8131	3.515901	GGTCTCCACTAGTCCACTCAATT	59.484	47.826	0.00	0.00	33.92	2.32
3712	8135	1.096416	CGGTCTCCACTAGTCCACTC	58.904	60.000	0.00	0.00	33.38	3.51
3733	8156	3.064931	CCTTCCTAGACCAAACACGTTC	58.935	50.000	0.00	0.00	0.00	3.95
3779	8202	7.605691	CCTATATCACATCCTTCCAGTTTGATC	59.394	40.741	0.00	0.00	0.00	2.92
3784	8207	5.905331	TCACCTATATCACATCCTTCCAGTT	59.095	40.000	0.00	0.00	0.00	3.16
3788	8211	9.388506	CATTTATCACCTATATCACATCCTTCC	57.611	37.037	0.00	0.00	0.00	3.46
3803	8226	3.544684	TCGCAAGCATCATTTATCACCT	58.455	40.909	0.00	0.00	37.18	4.00
3810	8233	6.570672	ATCTGAATATCGCAAGCATCATTT	57.429	33.333	0.00	0.00	37.18	2.32
3824	8247	7.776969	ACAGGTAATTCACTGCAATCTGAATAT	59.223	33.333	12.14	7.38	36.33	1.28
3833	8256	2.805671	CACGACAGGTAATTCACTGCAA	59.194	45.455	8.71	0.00	38.25	4.08
3836	8259	3.254060	CTCCACGACAGGTAATTCACTG	58.746	50.000	7.54	7.54	40.48	3.66
3883	8306	2.125952	TGCCGATCGAGCACACAG	60.126	61.111	22.05	3.66	34.69	3.66
3884	8307	2.125952	CTGCCGATCGAGCACACA	60.126	61.111	22.05	8.39	36.01	3.72
3886	8309	3.995219	CTGCTGCCGATCGAGCACA	62.995	63.158	23.13	21.55	40.30	4.57
3953	8376	1.227102	CCTCCCATGGCCGAATTCA	59.773	57.895	6.09	0.00	0.00	2.57
3954	8377	1.529244	CCCTCCCATGGCCGAATTC	60.529	63.158	6.09	0.00	0.00	2.17
3956	8379	3.501911	CCCCTCCCATGGCCGAAT	61.502	66.667	6.09	0.00	0.00	3.34
3990	8418	1.302033	AGCAACTGAAGCACCTCGG	60.302	57.895	0.00	0.00	0.00	4.63
4053	8482	3.192103	AACCCAACTCACCTCGGGC	62.192	63.158	0.00	0.00	42.97	6.13
4054	8483	1.302511	CAACCCAACTCACCTCGGG	60.303	63.158	0.00	0.00	44.88	5.14
4094	8523	7.039784	CCCAACCCATATACCTTATGAACAATG	60.040	40.741	0.00	0.00	0.00	2.82
4103	8532	2.790483	TGGCCCAACCCATATACCTTA	58.210	47.619	0.00	0.00	37.83	2.69
4106	8535	1.497286	TCTTGGCCCAACCCATATACC	59.503	52.381	0.00	0.00	37.83	2.73
4113	8542	0.897621	CAAAGATCTTGGCCCAACCC	59.102	55.000	9.17	0.00	37.83	4.11
4142	8571	2.573791	TAGGGTGTAGGGTGGGGCT	61.574	63.158	0.00	0.00	0.00	5.19
4143	8572	2.041596	TAGGGTGTAGGGTGGGGC	59.958	66.667	0.00	0.00	0.00	5.80
4186	8615	0.531200	GTTGGTAGTCTCCACCCTCG	59.469	60.000	0.00	0.00	37.20	4.63
4220	8649	4.161295	TTGCTCCCGATCCCGCAG	62.161	66.667	0.00	0.00	33.48	5.18
4221	8650	4.161295	CTTGCTCCCGATCCCGCA	62.161	66.667	0.00	0.00	0.00	5.69
4224	8653	2.306255	TAACGCTTGCTCCCGATCCC	62.306	60.000	0.00	0.00	0.00	3.85
4225	8654	1.143183	TAACGCTTGCTCCCGATCC	59.857	57.895	0.00	0.00	0.00	3.36
4226	8655	1.480219	CGTAACGCTTGCTCCCGATC	61.480	60.000	0.00	0.00	0.00	3.69
4227	8656	1.518572	CGTAACGCTTGCTCCCGAT	60.519	57.895	0.00	0.00	0.00	4.18
4228	8657	2.126228	CGTAACGCTTGCTCCCGA	60.126	61.111	0.00	0.00	0.00	5.14
4229	8658	3.186047	CCGTAACGCTTGCTCCCG	61.186	66.667	0.00	0.00	0.00	5.14
4230	8659	1.810030	CTCCGTAACGCTTGCTCCC	60.810	63.158	0.00	0.00	0.00	4.30
4231	8660	2.453638	GCTCCGTAACGCTTGCTCC	61.454	63.158	0.00	0.00	0.00	4.70
4232	8661	2.453638	GGCTCCGTAACGCTTGCTC	61.454	63.158	0.00	0.00	0.00	4.26
4233	8662	2.434359	GGCTCCGTAACGCTTGCT	60.434	61.111	0.00	0.00	0.00	3.91
4234	8663	3.849953	CGGCTCCGTAACGCTTGC	61.850	66.667	0.00	0.00	34.35	4.01
4244	8673	2.513897	GGAAATCCCACGGCTCCG	60.514	66.667	6.79	6.79	46.03	4.63
4254	8683	0.320050	TTTTTGGCGCAGGGAAATCC	59.680	50.000	10.83	0.00	0.00	3.01
4255	8684	3.904586	TTTTTGGCGCAGGGAAATC	57.095	47.368	10.83	0.00	0.00	2.17
4282	8711	3.005791	GCCAGTGTCCTATGCAACTTTTT	59.994	43.478	0.00	0.00	0.00	1.94
4283	8712	2.558359	GCCAGTGTCCTATGCAACTTTT	59.442	45.455	0.00	0.00	0.00	2.27
4284	8713	2.162681	GCCAGTGTCCTATGCAACTTT	58.837	47.619	0.00	0.00	0.00	2.66
4285	8714	1.073763	TGCCAGTGTCCTATGCAACTT	59.926	47.619	0.00	0.00	0.00	2.66
4286	8715	0.692476	TGCCAGTGTCCTATGCAACT	59.308	50.000	0.00	0.00	0.00	3.16
4287	8716	1.089920	CTGCCAGTGTCCTATGCAAC	58.910	55.000	0.00	0.00	30.10	4.17
4288	8717	0.035152	CCTGCCAGTGTCCTATGCAA	60.035	55.000	0.00	0.00	30.10	4.08
4289	8718	0.909133	TCCTGCCAGTGTCCTATGCA	60.909	55.000	0.00	0.00	0.00	3.96
4290	8719	0.179062	CTCCTGCCAGTGTCCTATGC	60.179	60.000	0.00	0.00	0.00	3.14
4291	8720	1.489481	TCTCCTGCCAGTGTCCTATG	58.511	55.000	0.00	0.00	0.00	2.23
4292	8721	2.114616	CTTCTCCTGCCAGTGTCCTAT	58.885	52.381	0.00	0.00	0.00	2.57
4293	8722	1.561643	CTTCTCCTGCCAGTGTCCTA	58.438	55.000	0.00	0.00	0.00	2.94
4294	8723	1.835927	GCTTCTCCTGCCAGTGTCCT	61.836	60.000	0.00	0.00	0.00	3.85
4295	8724	1.376553	GCTTCTCCTGCCAGTGTCC	60.377	63.158	0.00	0.00	0.00	4.02
4296	8725	1.739562	CGCTTCTCCTGCCAGTGTC	60.740	63.158	0.00	0.00	0.00	3.67
4297	8726	2.345244	CGCTTCTCCTGCCAGTGT	59.655	61.111	0.00	0.00	0.00	3.55
4298	8727	2.435586	CCGCTTCTCCTGCCAGTG	60.436	66.667	0.00	0.00	0.00	3.66
4299	8728	4.400961	GCCGCTTCTCCTGCCAGT	62.401	66.667	0.00	0.00	0.00	4.00
4300	8729	4.093291	AGCCGCTTCTCCTGCCAG	62.093	66.667	0.00	0.00	0.00	4.85
4301	8730	4.087892	GAGCCGCTTCTCCTGCCA	62.088	66.667	0.00	0.00	0.00	4.92
4303	8732	4.135153	TCGAGCCGCTTCTCCTGC	62.135	66.667	0.00	0.00	0.00	4.85
4304	8733	2.103934	CTCGAGCCGCTTCTCCTG	59.896	66.667	0.00	0.00	0.00	3.86
4305	8734	3.144193	CCTCGAGCCGCTTCTCCT	61.144	66.667	6.99	0.00	0.00	3.69
4306	8735	3.453679	ACCTCGAGCCGCTTCTCC	61.454	66.667	6.99	0.00	0.00	3.71
4307	8736	2.202676	CACCTCGAGCCGCTTCTC	60.203	66.667	6.99	0.00	0.00	2.87
4308	8737	4.443266	GCACCTCGAGCCGCTTCT	62.443	66.667	6.99	0.00	0.00	2.85
4314	8743	4.521062	ATCTGCGCACCTCGAGCC	62.521	66.667	5.66	0.00	40.17	4.70
4315	8744	2.510238	AATCTGCGCACCTCGAGC	60.510	61.111	5.66	0.00	41.67	5.03
4316	8745	0.459237	AAGAATCTGCGCACCTCGAG	60.459	55.000	5.66	5.13	41.67	4.04
4317	8746	0.815095	TAAGAATCTGCGCACCTCGA	59.185	50.000	5.66	1.76	41.67	4.04
4318	8747	0.924090	GTAAGAATCTGCGCACCTCG	59.076	55.000	5.66	0.00	42.12	4.63
4319	8748	1.291132	GGTAAGAATCTGCGCACCTC	58.709	55.000	5.66	2.87	0.00	3.85
4320	8749	0.107654	GGGTAAGAATCTGCGCACCT	60.108	55.000	5.66	0.00	0.00	4.00
4321	8750	0.392461	TGGGTAAGAATCTGCGCACC	60.392	55.000	5.66	2.81	0.00	5.01
4322	8751	0.727398	GTGGGTAAGAATCTGCGCAC	59.273	55.000	5.66	15.26	37.56	5.34
4323	8752	0.613260	AGTGGGTAAGAATCTGCGCA	59.387	50.000	10.98	10.98	0.00	6.09
4324	8753	1.009829	CAGTGGGTAAGAATCTGCGC	58.990	55.000	0.00	0.00	0.00	6.09
4325	8754	1.656652	CCAGTGGGTAAGAATCTGCG	58.343	55.000	0.00	0.00	0.00	5.18
4326	8755	2.044123	CCCAGTGGGTAAGAATCTGC	57.956	55.000	21.24	0.00	38.25	4.26

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.