Multiple sequence alignment - TraesCS1D01G059500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G059500 chr1D 100.000 4349 0 0 1 4349 39788623 39792971 0.000000e+00 8032.0
1 TraesCS1D01G059500 chr1D 89.251 1042 98 7 2341 3371 38728623 38729661 0.000000e+00 1291.0
2 TraesCS1D01G059500 chr1D 78.994 895 151 25 1042 1923 38726576 38727446 1.050000e-160 577.0
3 TraesCS1D01G059500 chr1D 77.297 762 165 6 1167 1924 7587816 7587059 3.990000e-120 442.0
4 TraesCS1D01G059500 chr1D 75.899 834 164 19 1105 1924 7429918 7430728 4.080000e-105 392.0
5 TraesCS1D01G059500 chr1B 91.977 1396 62 11 821 2204 58930652 58932009 0.000000e+00 1912.0
6 TraesCS1D01G059500 chr1B 93.918 1266 71 3 2312 3576 58932463 58933723 0.000000e+00 1906.0
7 TraesCS1D01G059500 chr1B 93.513 1187 72 2 2394 3579 58872535 58873717 0.000000e+00 1760.0
8 TraesCS1D01G059500 chr1B 88.993 1072 102 9 2342 3404 58557275 58558339 0.000000e+00 1312.0
9 TraesCS1D01G059500 chr1B 80.262 1221 196 24 1001 2210 58552822 58554008 0.000000e+00 878.0
10 TraesCS1D01G059500 chr1B 90.995 633 50 3 3576 4201 58984399 58985031 0.000000e+00 846.0
11 TraesCS1D01G059500 chr1B 82.516 795 121 15 2362 3145 9940467 9939680 0.000000e+00 682.0
12 TraesCS1D01G059500 chr1B 78.721 766 145 15 1168 1924 9942128 9941372 3.020000e-136 496.0
13 TraesCS1D01G059500 chr1B 77.657 828 154 18 1105 1924 9579037 9579841 3.940000e-130 475.0
14 TraesCS1D01G059500 chr1B 77.284 788 155 21 1148 1923 9490027 9490802 3.990000e-120 442.0
15 TraesCS1D01G059500 chr1B 88.587 368 22 10 365 721 58930031 58930389 3.110000e-116 429.0
16 TraesCS1D01G059500 chr1B 76.196 836 160 24 1105 1925 9899283 9898472 5.240000e-109 405.0
17 TraesCS1D01G059500 chr1B 91.237 194 15 2 3576 3767 58968854 58969047 3.340000e-66 263.0
18 TraesCS1D01G059500 chr1B 91.667 60 1 1 756 811 58930404 58930463 3.610000e-11 80.5
19 TraesCS1D01G059500 chr1A 88.734 1074 105 8 2341 3404 38714044 38715111 0.000000e+00 1299.0
20 TraesCS1D01G059500 chr1A 89.546 1014 98 3 2365 3371 38702734 38703746 0.000000e+00 1279.0
21 TraesCS1D01G059500 chr1A 80.947 971 169 15 2363 3323 9233841 9232877 0.000000e+00 754.0
22 TraesCS1D01G059500 chr1A 79.202 827 145 14 1105 1925 9089829 9090634 2.290000e-152 549.0
23 TraesCS1D01G059500 chr1A 78.995 776 134 15 1158 1923 38712137 38712893 1.810000e-138 503.0
24 TraesCS1D01G059500 chr1A 77.193 855 147 26 1105 1943 9236449 9235627 5.130000e-124 455.0
25 TraesCS1D01G059500 chr2B 79.082 980 189 14 2355 3323 118631855 118632829 0.000000e+00 660.0
26 TraesCS1D01G059500 chr2B 94.059 202 9 3 1 201 24104756 24104955 1.970000e-78 303.0
27 TraesCS1D01G059500 chr3D 79.079 956 172 23 2412 3351 42635477 42636420 2.210000e-177 632.0
28 TraesCS1D01G059500 chr3B 78.857 927 170 21 2412 3323 66419976 66420891 1.730000e-168 603.0
29 TraesCS1D01G059500 chr3B 94.059 202 9 3 1 201 135389565 135389764 1.970000e-78 303.0
30 TraesCS1D01G059500 chr6D 77.341 993 195 28 2352 3327 468181983 468181004 1.060000e-155 560.0
31 TraesCS1D01G059500 chr6D 94.059 202 9 3 1 201 76066703 76066902 1.970000e-78 303.0
32 TraesCS1D01G059500 chr4D 94.554 202 9 2 1 201 54383859 54384059 1.170000e-80 311.0
33 TraesCS1D01G059500 chr4A 94.554 202 9 2 1 201 710015588 710015388 1.170000e-80 311.0
34 TraesCS1D01G059500 chrUn 94.554 202 8 3 1 201 201221157 201220958 4.220000e-80 309.0
35 TraesCS1D01G059500 chr5B 94.554 202 8 3 1 201 476172060 476171861 4.220000e-80 309.0
36 TraesCS1D01G059500 chr7B 94.059 202 9 3 1 201 470243036 470243235 1.970000e-78 303.0
37 TraesCS1D01G059500 chr7B 94.059 202 9 3 1 201 470294023 470294222 1.970000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G059500 chr1D 39788623 39792971 4348 False 8032.000 8032 100.00000 1 4349 1 chr1D.!!$F2 4348
1 TraesCS1D01G059500 chr1D 38726576 38729661 3085 False 934.000 1291 84.12250 1042 3371 2 chr1D.!!$F3 2329
2 TraesCS1D01G059500 chr1D 7587059 7587816 757 True 442.000 442 77.29700 1167 1924 1 chr1D.!!$R1 757
3 TraesCS1D01G059500 chr1D 7429918 7430728 810 False 392.000 392 75.89900 1105 1924 1 chr1D.!!$F1 819
4 TraesCS1D01G059500 chr1B 58872535 58873717 1182 False 1760.000 1760 93.51300 2394 3579 1 chr1B.!!$F3 1185
5 TraesCS1D01G059500 chr1B 58552822 58558339 5517 False 1095.000 1312 84.62750 1001 3404 2 chr1B.!!$F6 2403
6 TraesCS1D01G059500 chr1B 58930031 58933723 3692 False 1081.875 1912 91.53725 365 3576 4 chr1B.!!$F7 3211
7 TraesCS1D01G059500 chr1B 58984399 58985031 632 False 846.000 846 90.99500 3576 4201 1 chr1B.!!$F5 625
8 TraesCS1D01G059500 chr1B 9939680 9942128 2448 True 589.000 682 80.61850 1168 3145 2 chr1B.!!$R2 1977
9 TraesCS1D01G059500 chr1B 9579037 9579841 804 False 475.000 475 77.65700 1105 1924 1 chr1B.!!$F2 819
10 TraesCS1D01G059500 chr1B 9490027 9490802 775 False 442.000 442 77.28400 1148 1923 1 chr1B.!!$F1 775
11 TraesCS1D01G059500 chr1B 9898472 9899283 811 True 405.000 405 76.19600 1105 1925 1 chr1B.!!$R1 820
12 TraesCS1D01G059500 chr1A 38702734 38703746 1012 False 1279.000 1279 89.54600 2365 3371 1 chr1A.!!$F2 1006
13 TraesCS1D01G059500 chr1A 38712137 38715111 2974 False 901.000 1299 83.86450 1158 3404 2 chr1A.!!$F3 2246
14 TraesCS1D01G059500 chr1A 9232877 9236449 3572 True 604.500 754 79.07000 1105 3323 2 chr1A.!!$R1 2218
15 TraesCS1D01G059500 chr1A 9089829 9090634 805 False 549.000 549 79.20200 1105 1925 1 chr1A.!!$F1 820
16 TraesCS1D01G059500 chr2B 118631855 118632829 974 False 660.000 660 79.08200 2355 3323 1 chr2B.!!$F2 968
17 TraesCS1D01G059500 chr3D 42635477 42636420 943 False 632.000 632 79.07900 2412 3351 1 chr3D.!!$F1 939
18 TraesCS1D01G059500 chr3B 66419976 66420891 915 False 603.000 603 78.85700 2412 3323 1 chr3B.!!$F1 911
19 TraesCS1D01G059500 chr6D 468181004 468181983 979 True 560.000 560 77.34100 2352 3327 1 chr6D.!!$R1 975


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 486 0.030235 GGTTGCCAAAACCGTCAGTC 59.970 55.0 0.00 0.00 0.00 3.51 F
492 494 0.108585 AAACCGTCAGTCATGGCTGT 59.891 50.0 25.84 4.69 37.70 4.40 F
519 521 0.179073 TCAATCGAAGCTAGCTGCCC 60.179 55.0 20.16 9.86 44.23 5.36 F
659 671 0.445436 GTTCCAAGTGATGCTCAGCG 59.555 55.0 0.00 0.00 0.00 5.18 F
2290 6668 0.250295 TTTCAGTGCTTCCGAGTGGG 60.250 55.0 0.00 0.00 35.24 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1894 0.389426 CGGAAGGTGTAGTTGGTCCG 60.389 60.000 0.00 0.0 41.71 4.79 R
2267 6630 1.151668 CTCGGAAGCACTGAAACAGG 58.848 55.000 0.00 0.0 35.51 4.00 R
2283 6661 2.496070 TGGAGTTTACTCATCCCACTCG 59.504 50.000 11.67 0.0 44.60 4.18 R
2338 6742 3.485743 GCACAAAGAAGCAAAGGTAAACG 59.514 43.478 0.00 0.0 0.00 3.60 R
4288 8717 0.035152 CCTGCCAGTGTCCTATGCAA 60.035 55.000 0.00 0.0 30.10 4.08 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.857734 TCACTAGTTTCAGAAAAACACATCA 57.142 32.000 0.00 0.00 32.81 3.07
27 28 7.693952 TCACTAGTTTCAGAAAAACACATCAC 58.306 34.615 0.00 0.00 32.81 3.06
28 29 7.335673 TCACTAGTTTCAGAAAAACACATCACA 59.664 33.333 0.00 0.00 32.81 3.58
29 30 7.641411 CACTAGTTTCAGAAAAACACATCACAG 59.359 37.037 0.00 0.00 32.81 3.66
30 31 6.515272 AGTTTCAGAAAAACACATCACAGT 57.485 33.333 0.00 0.00 32.81 3.55
31 32 6.924111 AGTTTCAGAAAAACACATCACAGTT 58.076 32.000 0.00 0.00 32.81 3.16
32 33 8.050778 AGTTTCAGAAAAACACATCACAGTTA 57.949 30.769 0.00 0.00 32.81 2.24
33 34 7.968405 AGTTTCAGAAAAACACATCACAGTTAC 59.032 33.333 0.00 0.00 32.81 2.50
34 35 7.624360 TTCAGAAAAACACATCACAGTTACT 57.376 32.000 0.00 0.00 0.00 2.24
35 36 7.246674 TCAGAAAAACACATCACAGTTACTC 57.753 36.000 0.00 0.00 0.00 2.59
36 37 6.260050 TCAGAAAAACACATCACAGTTACTCC 59.740 38.462 0.00 0.00 0.00 3.85
37 38 6.038161 CAGAAAAACACATCACAGTTACTCCA 59.962 38.462 0.00 0.00 0.00 3.86
38 39 6.772716 AGAAAAACACATCACAGTTACTCCAT 59.227 34.615 0.00 0.00 0.00 3.41
39 40 6.959639 AAAACACATCACAGTTACTCCATT 57.040 33.333 0.00 0.00 0.00 3.16
40 41 5.947228 AACACATCACAGTTACTCCATTG 57.053 39.130 0.00 0.00 0.00 2.82
41 42 5.227569 ACACATCACAGTTACTCCATTGA 57.772 39.130 0.00 0.00 0.00 2.57
42 43 5.620206 ACACATCACAGTTACTCCATTGAA 58.380 37.500 0.00 0.00 0.00 2.69
43 44 5.702670 ACACATCACAGTTACTCCATTGAAG 59.297 40.000 0.00 0.00 0.00 3.02
44 45 5.934043 CACATCACAGTTACTCCATTGAAGA 59.066 40.000 0.00 0.00 0.00 2.87
45 46 6.427853 CACATCACAGTTACTCCATTGAAGAA 59.572 38.462 0.00 0.00 0.00 2.52
46 47 6.998074 ACATCACAGTTACTCCATTGAAGAAA 59.002 34.615 0.00 0.00 0.00 2.52
47 48 6.861065 TCACAGTTACTCCATTGAAGAAAC 57.139 37.500 0.00 0.00 0.00 2.78
48 49 6.353323 TCACAGTTACTCCATTGAAGAAACA 58.647 36.000 0.00 0.00 0.00 2.83
49 50 6.826231 TCACAGTTACTCCATTGAAGAAACAA 59.174 34.615 0.00 0.00 0.00 2.83
50 51 7.502226 TCACAGTTACTCCATTGAAGAAACAAT 59.498 33.333 0.00 0.00 40.50 2.71
51 52 8.137437 CACAGTTACTCCATTGAAGAAACAATT 58.863 33.333 0.00 0.00 38.25 2.32
52 53 8.695456 ACAGTTACTCCATTGAAGAAACAATTT 58.305 29.630 0.00 0.00 38.25 1.82
53 54 9.185192 CAGTTACTCCATTGAAGAAACAATTTC 57.815 33.333 0.00 0.00 38.25 2.17
54 55 8.076178 AGTTACTCCATTGAAGAAACAATTTCG 58.924 33.333 0.00 0.00 44.29 3.46
55 56 5.222631 ACTCCATTGAAGAAACAATTTCGC 58.777 37.500 0.00 0.00 44.29 4.70
56 57 5.193663 TCCATTGAAGAAACAATTTCGCA 57.806 34.783 0.00 0.00 44.29 5.10
57 58 5.595885 TCCATTGAAGAAACAATTTCGCAA 58.404 33.333 11.99 11.99 44.29 4.85
58 59 5.691305 TCCATTGAAGAAACAATTTCGCAAG 59.309 36.000 13.82 8.79 44.29 4.01
59 60 5.368374 CATTGAAGAAACAATTTCGCAAGC 58.632 37.500 13.82 0.00 44.29 4.01
60 61 4.305989 TGAAGAAACAATTTCGCAAGCT 57.694 36.364 0.00 0.00 44.29 3.74
61 62 4.043750 TGAAGAAACAATTTCGCAAGCTG 58.956 39.130 0.00 0.00 44.29 4.24
62 63 3.017265 AGAAACAATTTCGCAAGCTGG 57.983 42.857 0.00 0.00 44.29 4.85
63 64 2.622942 AGAAACAATTTCGCAAGCTGGA 59.377 40.909 0.00 0.00 44.29 3.86
64 65 3.068024 AGAAACAATTTCGCAAGCTGGAA 59.932 39.130 0.00 0.00 44.29 3.53
65 66 3.665745 AACAATTTCGCAAGCTGGAAT 57.334 38.095 0.00 0.00 37.18 3.01
66 67 4.782019 AACAATTTCGCAAGCTGGAATA 57.218 36.364 0.00 0.00 37.18 1.75
67 68 4.989279 ACAATTTCGCAAGCTGGAATAT 57.011 36.364 0.00 0.00 37.18 1.28
68 69 4.675510 ACAATTTCGCAAGCTGGAATATG 58.324 39.130 0.00 0.17 37.18 1.78
69 70 4.398988 ACAATTTCGCAAGCTGGAATATGA 59.601 37.500 0.00 0.00 37.18 2.15
70 71 5.105797 ACAATTTCGCAAGCTGGAATATGAA 60.106 36.000 0.00 0.00 37.18 2.57
71 72 5.581126 ATTTCGCAAGCTGGAATATGAAA 57.419 34.783 0.00 0.00 37.18 2.69
72 73 4.355543 TTCGCAAGCTGGAATATGAAAC 57.644 40.909 0.00 0.00 37.18 2.78
73 74 3.609853 TCGCAAGCTGGAATATGAAACT 58.390 40.909 0.00 0.00 37.18 2.66
74 75 3.623060 TCGCAAGCTGGAATATGAAACTC 59.377 43.478 0.00 0.00 37.18 3.01
75 76 3.374988 CGCAAGCTGGAATATGAAACTCA 59.625 43.478 0.00 0.00 0.00 3.41
76 77 4.666237 GCAAGCTGGAATATGAAACTCAC 58.334 43.478 0.00 0.00 0.00 3.51
77 78 4.156556 GCAAGCTGGAATATGAAACTCACA 59.843 41.667 0.00 0.00 0.00 3.58
78 79 5.335897 GCAAGCTGGAATATGAAACTCACAA 60.336 40.000 0.00 0.00 0.00 3.33
79 80 6.680810 CAAGCTGGAATATGAAACTCACAAA 58.319 36.000 0.00 0.00 0.00 2.83
80 81 6.506500 AGCTGGAATATGAAACTCACAAAG 57.493 37.500 0.00 0.00 0.00 2.77
81 82 6.240894 AGCTGGAATATGAAACTCACAAAGA 58.759 36.000 0.00 0.00 0.00 2.52
82 83 6.716628 AGCTGGAATATGAAACTCACAAAGAA 59.283 34.615 0.00 0.00 0.00 2.52
83 84 7.231317 AGCTGGAATATGAAACTCACAAAGAAA 59.769 33.333 0.00 0.00 0.00 2.52
84 85 7.867403 GCTGGAATATGAAACTCACAAAGAAAA 59.133 33.333 0.00 0.00 0.00 2.29
85 86 9.185192 CTGGAATATGAAACTCACAAAGAAAAC 57.815 33.333 0.00 0.00 0.00 2.43
86 87 8.912988 TGGAATATGAAACTCACAAAGAAAACT 58.087 29.630 0.00 0.00 0.00 2.66
216 217 9.232473 AGTAAAATTAACCAAGAGAAGACCATC 57.768 33.333 0.00 0.00 0.00 3.51
217 218 9.010029 GTAAAATTAACCAAGAGAAGACCATCA 57.990 33.333 0.00 0.00 0.00 3.07
218 219 7.454260 AAATTAACCAAGAGAAGACCATCAC 57.546 36.000 0.00 0.00 0.00 3.06
219 220 3.425162 AACCAAGAGAAGACCATCACC 57.575 47.619 0.00 0.00 0.00 4.02
220 221 1.276421 ACCAAGAGAAGACCATCACCG 59.724 52.381 0.00 0.00 0.00 4.94
221 222 1.550524 CCAAGAGAAGACCATCACCGA 59.449 52.381 0.00 0.00 0.00 4.69
222 223 2.028112 CCAAGAGAAGACCATCACCGAA 60.028 50.000 0.00 0.00 0.00 4.30
223 224 3.557054 CCAAGAGAAGACCATCACCGAAA 60.557 47.826 0.00 0.00 0.00 3.46
224 225 4.256920 CAAGAGAAGACCATCACCGAAAT 58.743 43.478 0.00 0.00 0.00 2.17
225 226 3.866651 AGAGAAGACCATCACCGAAATG 58.133 45.455 0.00 0.00 0.00 2.32
226 227 3.515502 AGAGAAGACCATCACCGAAATGA 59.484 43.478 0.00 0.00 0.00 2.57
227 228 3.600388 AGAAGACCATCACCGAAATGAC 58.400 45.455 0.00 0.00 0.00 3.06
228 229 3.007940 AGAAGACCATCACCGAAATGACA 59.992 43.478 0.00 0.00 0.00 3.58
229 230 3.417069 AGACCATCACCGAAATGACAA 57.583 42.857 0.00 0.00 0.00 3.18
230 231 3.750371 AGACCATCACCGAAATGACAAA 58.250 40.909 0.00 0.00 0.00 2.83
231 232 4.141287 AGACCATCACCGAAATGACAAAA 58.859 39.130 0.00 0.00 0.00 2.44
232 233 4.582656 AGACCATCACCGAAATGACAAAAA 59.417 37.500 0.00 0.00 0.00 1.94
233 234 5.243730 AGACCATCACCGAAATGACAAAAAT 59.756 36.000 0.00 0.00 0.00 1.82
234 235 6.432783 AGACCATCACCGAAATGACAAAAATA 59.567 34.615 0.00 0.00 0.00 1.40
235 236 6.987386 ACCATCACCGAAATGACAAAAATAA 58.013 32.000 0.00 0.00 0.00 1.40
236 237 7.437748 ACCATCACCGAAATGACAAAAATAAA 58.562 30.769 0.00 0.00 0.00 1.40
237 238 7.383843 ACCATCACCGAAATGACAAAAATAAAC 59.616 33.333 0.00 0.00 0.00 2.01
238 239 7.148656 CCATCACCGAAATGACAAAAATAAACC 60.149 37.037 0.00 0.00 0.00 3.27
239 240 5.915758 TCACCGAAATGACAAAAATAAACCG 59.084 36.000 0.00 0.00 0.00 4.44
240 241 5.915758 CACCGAAATGACAAAAATAAACCGA 59.084 36.000 0.00 0.00 0.00 4.69
241 242 6.418226 CACCGAAATGACAAAAATAAACCGAA 59.582 34.615 0.00 0.00 0.00 4.30
242 243 6.639279 ACCGAAATGACAAAAATAAACCGAAG 59.361 34.615 0.00 0.00 0.00 3.79
255 256 3.036084 CGAAGGAACGCACGTGCT 61.036 61.111 35.27 20.40 39.32 4.40
256 257 1.731613 CGAAGGAACGCACGTGCTA 60.732 57.895 35.27 0.00 39.32 3.49
257 258 1.279527 CGAAGGAACGCACGTGCTAA 61.280 55.000 35.27 0.00 39.32 3.09
258 259 0.163146 GAAGGAACGCACGTGCTAAC 59.837 55.000 35.27 24.37 39.32 2.34
259 260 0.249741 AAGGAACGCACGTGCTAACT 60.250 50.000 35.27 24.27 39.32 2.24
260 261 0.599558 AGGAACGCACGTGCTAACTA 59.400 50.000 35.27 0.00 39.32 2.24
261 262 1.000060 AGGAACGCACGTGCTAACTAA 60.000 47.619 35.27 0.00 39.32 2.24
262 263 1.389106 GGAACGCACGTGCTAACTAAG 59.611 52.381 35.27 21.31 39.32 2.18
263 264 2.322161 GAACGCACGTGCTAACTAAGA 58.678 47.619 35.27 0.00 39.32 2.10
264 265 1.978542 ACGCACGTGCTAACTAAGAG 58.021 50.000 35.27 19.91 39.32 2.85
265 266 0.640768 CGCACGTGCTAACTAAGAGC 59.359 55.000 35.27 7.49 40.53 4.09
266 267 0.640768 GCACGTGCTAACTAAGAGCG 59.359 55.000 32.55 0.00 43.19 5.03
267 268 0.640768 CACGTGCTAACTAAGAGCGC 59.359 55.000 0.82 0.00 45.08 5.92
268 269 0.526662 ACGTGCTAACTAAGAGCGCT 59.473 50.000 11.27 11.27 46.09 5.92
269 270 1.192793 CGTGCTAACTAAGAGCGCTC 58.807 55.000 30.01 30.01 46.09 5.03
270 271 1.467543 CGTGCTAACTAAGAGCGCTCA 60.468 52.381 36.87 18.30 46.09 4.26
271 272 1.921230 GTGCTAACTAAGAGCGCTCAC 59.079 52.381 36.87 20.50 45.09 3.51
272 273 1.135083 TGCTAACTAAGAGCGCTCACC 60.135 52.381 36.87 13.62 43.19 4.02
273 274 1.828832 CTAACTAAGAGCGCTCACCG 58.171 55.000 36.87 25.12 40.75 4.94
274 275 1.400846 CTAACTAAGAGCGCTCACCGA 59.599 52.381 36.87 18.41 40.02 4.69
275 276 0.601558 AACTAAGAGCGCTCACCGAA 59.398 50.000 36.87 16.83 40.02 4.30
276 277 0.109226 ACTAAGAGCGCTCACCGAAC 60.109 55.000 36.87 11.20 40.02 3.95
277 278 0.171455 CTAAGAGCGCTCACCGAACT 59.829 55.000 36.87 13.78 40.02 3.01
278 279 1.400846 CTAAGAGCGCTCACCGAACTA 59.599 52.381 36.87 15.39 40.02 2.24
279 280 0.171455 AAGAGCGCTCACCGAACTAG 59.829 55.000 36.87 0.00 40.02 2.57
280 281 1.226717 GAGCGCTCACCGAACTAGG 60.227 63.158 31.91 0.00 40.02 3.02
281 282 2.886124 GCGCTCACCGAACTAGGC 60.886 66.667 0.00 0.00 40.02 3.93
282 283 2.202756 CGCTCACCGAACTAGGCC 60.203 66.667 0.00 0.00 40.02 5.19
283 284 2.202756 GCTCACCGAACTAGGCCG 60.203 66.667 0.00 0.00 33.69 6.13
284 285 2.707849 GCTCACCGAACTAGGCCGA 61.708 63.158 0.00 0.00 33.69 5.54
285 286 1.433879 CTCACCGAACTAGGCCGAG 59.566 63.158 11.86 11.86 33.69 4.63
286 287 2.202756 CACCGAACTAGGCCGAGC 60.203 66.667 13.48 0.00 33.69 5.03
297 298 2.563427 GCCGAGCCAGAAAAGCAC 59.437 61.111 0.00 0.00 0.00 4.40
298 299 2.863153 CCGAGCCAGAAAAGCACG 59.137 61.111 0.00 0.00 42.78 5.34
299 300 2.174349 CGAGCCAGAAAAGCACGC 59.826 61.111 0.00 0.00 37.50 5.34
300 301 2.563427 GAGCCAGAAAAGCACGCC 59.437 61.111 0.00 0.00 0.00 5.68
301 302 1.968540 GAGCCAGAAAAGCACGCCT 60.969 57.895 0.00 0.00 0.00 5.52
302 303 0.673644 GAGCCAGAAAAGCACGCCTA 60.674 55.000 0.00 0.00 0.00 3.93
303 304 0.035056 AGCCAGAAAAGCACGCCTAT 60.035 50.000 0.00 0.00 0.00 2.57
304 305 0.811281 GCCAGAAAAGCACGCCTATT 59.189 50.000 0.00 0.00 0.00 1.73
305 306 1.202348 GCCAGAAAAGCACGCCTATTT 59.798 47.619 0.00 0.00 0.00 1.40
306 307 2.867429 CCAGAAAAGCACGCCTATTTG 58.133 47.619 0.00 0.00 0.00 2.32
307 308 2.487762 CCAGAAAAGCACGCCTATTTGA 59.512 45.455 0.00 0.00 0.00 2.69
308 309 3.426695 CCAGAAAAGCACGCCTATTTGAG 60.427 47.826 0.00 0.00 0.00 3.02
320 321 2.952310 CCTATTTGAGGCAGTAAAGGGC 59.048 50.000 0.00 0.00 38.96 5.19
326 327 3.890674 GCAGTAAAGGGCCACGAG 58.109 61.111 6.18 0.00 0.00 4.18
327 328 1.745489 GCAGTAAAGGGCCACGAGG 60.745 63.158 6.18 0.00 38.23 4.63
328 329 1.980052 CAGTAAAGGGCCACGAGGA 59.020 57.895 6.18 0.00 36.89 3.71
329 330 0.108138 CAGTAAAGGGCCACGAGGAG 60.108 60.000 6.18 0.00 36.89 3.69
330 331 1.449778 GTAAAGGGCCACGAGGAGC 60.450 63.158 6.18 0.00 36.89 4.70
331 332 1.612442 TAAAGGGCCACGAGGAGCT 60.612 57.895 6.18 0.00 36.89 4.09
332 333 1.899437 TAAAGGGCCACGAGGAGCTG 61.899 60.000 6.18 0.00 36.89 4.24
334 335 4.459089 GGGCCACGAGGAGCTGTC 62.459 72.222 4.39 0.00 36.89 3.51
335 336 4.803426 GGCCACGAGGAGCTGTCG 62.803 72.222 12.45 12.45 43.25 4.35
336 337 3.749064 GCCACGAGGAGCTGTCGA 61.749 66.667 19.32 0.00 39.92 4.20
337 338 3.069980 GCCACGAGGAGCTGTCGAT 62.070 63.158 19.32 3.89 39.92 3.59
338 339 1.513158 CCACGAGGAGCTGTCGATT 59.487 57.895 19.32 0.00 39.92 3.34
339 340 0.108615 CCACGAGGAGCTGTCGATTT 60.109 55.000 19.32 0.00 39.92 2.17
340 341 1.673033 CCACGAGGAGCTGTCGATTTT 60.673 52.381 19.32 0.00 39.92 1.82
341 342 2.069273 CACGAGGAGCTGTCGATTTTT 58.931 47.619 19.32 0.00 39.92 1.94
342 343 3.250744 CACGAGGAGCTGTCGATTTTTA 58.749 45.455 19.32 0.00 39.92 1.52
343 344 3.304559 CACGAGGAGCTGTCGATTTTTAG 59.695 47.826 19.32 0.39 39.92 1.85
344 345 2.282820 CGAGGAGCTGTCGATTTTTAGC 59.717 50.000 9.05 0.00 39.92 3.09
346 347 4.683832 GAGGAGCTGTCGATTTTTAGCTA 58.316 43.478 0.00 0.00 45.76 3.32
347 348 4.434520 AGGAGCTGTCGATTTTTAGCTAC 58.565 43.478 10.80 10.80 45.76 3.58
348 349 4.181578 GGAGCTGTCGATTTTTAGCTACA 58.818 43.478 12.79 0.00 45.76 2.74
349 350 4.268884 GGAGCTGTCGATTTTTAGCTACAG 59.731 45.833 12.79 4.91 45.76 2.74
351 352 3.542291 GCTGTCGATTTTTAGCTACAGCG 60.542 47.826 15.90 7.89 46.97 5.18
352 353 5.721148 GCTGTCGATTTTTAGCTACAGCGA 61.721 45.833 15.90 9.88 46.97 4.93
353 354 7.446078 GCTGTCGATTTTTAGCTACAGCGAG 62.446 48.000 15.90 4.47 46.97 5.03
362 363 2.488355 TACAGCGAGTGTAGCGGC 59.512 61.111 0.00 0.00 40.94 6.53
363 364 2.337246 TACAGCGAGTGTAGCGGCA 61.337 57.895 1.45 0.00 40.94 5.69
420 421 1.269723 CGCCCCTGGTTTTTCTTCTTC 59.730 52.381 0.00 0.00 0.00 2.87
446 448 3.118629 GGCAATGATGAGTGAGTCTACCA 60.119 47.826 0.00 0.00 0.00 3.25
464 466 3.801698 ACCAATCATTCATCAGAGGTCG 58.198 45.455 0.00 0.00 0.00 4.79
475 477 0.821711 CAGAGGTCGGGTTGCCAAAA 60.822 55.000 0.00 0.00 0.00 2.44
481 483 3.527641 GGGTTGCCAAAACCGTCA 58.472 55.556 1.38 0.00 41.18 4.35
482 484 1.362355 GGGTTGCCAAAACCGTCAG 59.638 57.895 1.38 0.00 41.18 3.51
483 485 1.388837 GGGTTGCCAAAACCGTCAGT 61.389 55.000 1.38 0.00 41.18 3.41
484 486 0.030235 GGTTGCCAAAACCGTCAGTC 59.970 55.000 0.00 0.00 0.00 3.51
485 487 0.736053 GTTGCCAAAACCGTCAGTCA 59.264 50.000 0.00 0.00 0.00 3.41
486 488 1.336755 GTTGCCAAAACCGTCAGTCAT 59.663 47.619 0.00 0.00 0.00 3.06
487 489 0.950836 TGCCAAAACCGTCAGTCATG 59.049 50.000 0.00 0.00 0.00 3.07
488 490 0.240945 GCCAAAACCGTCAGTCATGG 59.759 55.000 0.00 0.00 37.24 3.66
492 494 0.108585 AAACCGTCAGTCATGGCTGT 59.891 50.000 25.84 4.69 37.70 4.40
502 504 4.644234 TCAGTCATGGCTGTTTTCTTTTCA 59.356 37.500 25.84 0.39 37.70 2.69
509 511 5.280945 TGGCTGTTTTCTTTTCAATCGAAG 58.719 37.500 0.00 0.00 31.28 3.79
519 521 0.179073 TCAATCGAAGCTAGCTGCCC 60.179 55.000 20.16 9.86 44.23 5.36
527 529 4.232878 CTAGCTGCCCGGCTGGAG 62.233 72.222 15.09 4.20 42.23 3.86
564 566 1.806542 CAAATCAAGTCACGGGGTCAG 59.193 52.381 0.00 0.00 0.00 3.51
575 577 2.293399 CACGGGGTCAGGAAAGAAAAAG 59.707 50.000 0.00 0.00 0.00 2.27
576 578 2.173996 ACGGGGTCAGGAAAGAAAAAGA 59.826 45.455 0.00 0.00 0.00 2.52
642 654 1.482593 CTCCCACTCGCTATCCAAGTT 59.517 52.381 0.00 0.00 0.00 2.66
648 660 2.567615 ACTCGCTATCCAAGTTCCAAGT 59.432 45.455 0.00 0.00 0.00 3.16
659 671 0.445436 GTTCCAAGTGATGCTCAGCG 59.555 55.000 0.00 0.00 0.00 5.18
696 708 3.822735 AGAATACCATGCATGCGCTATTT 59.177 39.130 21.69 8.01 39.64 1.40
726 738 8.766994 ATATATACAAAAGGCATTCAAGTGGT 57.233 30.769 0.00 0.00 0.00 4.16
727 739 9.860650 ATATATACAAAAGGCATTCAAGTGGTA 57.139 29.630 0.00 0.00 0.00 3.25
728 740 8.766994 ATATACAAAAGGCATTCAAGTGGTAT 57.233 30.769 0.00 0.00 0.00 2.73
730 742 6.267496 ACAAAAGGCATTCAAGTGGTATAC 57.733 37.500 0.00 0.00 0.00 1.47
731 743 5.185056 ACAAAAGGCATTCAAGTGGTATACC 59.815 40.000 15.50 15.50 0.00 2.73
732 744 4.862641 AAGGCATTCAAGTGGTATACCT 57.137 40.909 22.41 0.19 36.82 3.08
733 745 4.862641 AGGCATTCAAGTGGTATACCTT 57.137 40.909 22.41 7.01 36.82 3.50
734 746 5.193099 AGGCATTCAAGTGGTATACCTTT 57.807 39.130 22.41 13.72 36.82 3.11
735 747 5.193679 AGGCATTCAAGTGGTATACCTTTC 58.806 41.667 22.41 12.59 36.82 2.62
736 748 4.338400 GGCATTCAAGTGGTATACCTTTCC 59.662 45.833 22.41 10.01 36.82 3.13
737 749 4.947388 GCATTCAAGTGGTATACCTTTCCA 59.053 41.667 22.41 0.00 36.82 3.53
744 756 3.442625 GTGGTATACCTTTCCACTTTGGC 59.557 47.826 22.41 0.00 45.46 4.52
745 757 3.074687 TGGTATACCTTTCCACTTTGGCA 59.925 43.478 22.41 0.00 35.51 4.92
746 758 3.442625 GGTATACCTTTCCACTTTGGCAC 59.557 47.826 15.09 0.00 37.47 5.01
747 759 2.738587 TACCTTTCCACTTTGGCACA 57.261 45.000 0.00 0.00 37.47 4.57
748 760 2.086610 ACCTTTCCACTTTGGCACAT 57.913 45.000 0.00 0.00 39.30 3.21
749 761 3.237268 ACCTTTCCACTTTGGCACATA 57.763 42.857 0.00 0.00 39.30 2.29
750 762 2.890945 ACCTTTCCACTTTGGCACATAC 59.109 45.455 0.00 0.00 39.30 2.39
751 763 3.157087 CCTTTCCACTTTGGCACATACT 58.843 45.455 0.00 0.00 39.30 2.12
752 764 3.191371 CCTTTCCACTTTGGCACATACTC 59.809 47.826 0.00 0.00 39.30 2.59
753 765 2.489938 TCCACTTTGGCACATACTCC 57.510 50.000 0.00 0.00 39.30 3.85
754 766 1.702401 TCCACTTTGGCACATACTCCA 59.298 47.619 0.00 0.00 39.30 3.86
807 823 5.999600 CACCAACTTGCATGGATAGATATGA 59.000 40.000 11.80 0.00 40.56 2.15
811 827 6.754702 ACTTGCATGGATAGATATGAATGC 57.245 37.500 4.44 0.00 40.57 3.56
812 828 5.353400 ACTTGCATGGATAGATATGAATGCG 59.647 40.000 4.44 0.00 42.53 4.73
813 829 4.835678 TGCATGGATAGATATGAATGCGT 58.164 39.130 0.00 0.00 42.53 5.24
814 830 4.632688 TGCATGGATAGATATGAATGCGTG 59.367 41.667 0.00 4.21 42.53 5.34
815 831 4.872124 GCATGGATAGATATGAATGCGTGA 59.128 41.667 10.20 0.00 32.04 4.35
816 832 5.526479 GCATGGATAGATATGAATGCGTGAT 59.474 40.000 10.20 0.00 32.04 3.06
817 833 6.511282 GCATGGATAGATATGAATGCGTGATG 60.511 42.308 10.20 0.00 32.04 3.07
818 834 4.872124 TGGATAGATATGAATGCGTGATGC 59.128 41.667 0.00 0.00 46.70 3.91
844 1039 2.672908 TACGTTGCTATCTCGGCCGC 62.673 60.000 23.51 5.52 0.00 6.53
929 1128 4.566004 TCCACACCGTTTTGAGAATCTAG 58.434 43.478 0.00 0.00 34.92 2.43
930 1129 3.125316 CCACACCGTTTTGAGAATCTAGC 59.875 47.826 0.00 0.00 34.92 3.42
931 1130 3.997021 CACACCGTTTTGAGAATCTAGCT 59.003 43.478 0.00 0.00 34.92 3.32
932 1131 4.452455 CACACCGTTTTGAGAATCTAGCTT 59.548 41.667 0.00 0.00 34.92 3.74
933 1132 4.691216 ACACCGTTTTGAGAATCTAGCTTC 59.309 41.667 0.00 0.00 34.92 3.86
934 1133 4.932200 CACCGTTTTGAGAATCTAGCTTCT 59.068 41.667 8.56 8.56 38.18 2.85
935 1134 4.932200 ACCGTTTTGAGAATCTAGCTTCTG 59.068 41.667 13.41 0.57 35.63 3.02
936 1135 4.932200 CCGTTTTGAGAATCTAGCTTCTGT 59.068 41.667 13.41 0.00 35.63 3.41
937 1136 6.100004 CCGTTTTGAGAATCTAGCTTCTGTA 58.900 40.000 13.41 0.35 35.63 2.74
938 1137 6.254589 CCGTTTTGAGAATCTAGCTTCTGTAG 59.745 42.308 13.41 0.25 35.63 2.74
939 1138 6.809196 CGTTTTGAGAATCTAGCTTCTGTAGT 59.191 38.462 13.41 0.00 35.63 2.73
940 1139 7.329717 CGTTTTGAGAATCTAGCTTCTGTAGTT 59.670 37.037 13.41 0.00 35.63 2.24
941 1140 9.640963 GTTTTGAGAATCTAGCTTCTGTAGTTA 57.359 33.333 13.41 0.00 35.63 2.24
958 1157 4.708726 AGTTAAATCATCAGCTGGTTGC 57.291 40.909 15.13 0.00 43.29 4.17
994 1198 3.503363 GGCGTGCATCAGCTGGTC 61.503 66.667 15.13 3.86 42.74 4.02
995 1199 2.435586 GCGTGCATCAGCTGGTCT 60.436 61.111 15.13 0.00 42.74 3.85
999 1203 0.801251 GTGCATCAGCTGGTCTCAAC 59.199 55.000 15.13 1.78 42.74 3.18
1142 1347 2.587889 CCCTACCCGTTCGGCATT 59.412 61.111 5.66 0.00 33.26 3.56
1143 1348 1.817941 CCCTACCCGTTCGGCATTG 60.818 63.158 5.66 0.00 33.26 2.82
1144 1349 1.817941 CCTACCCGTTCGGCATTGG 60.818 63.158 5.66 3.27 33.26 3.16
1145 1350 2.437002 TACCCGTTCGGCATTGGC 60.437 61.111 5.66 0.00 40.13 4.52
1612 1847 1.246056 TTCCGGGAGTACGACCACAG 61.246 60.000 0.00 5.10 35.47 3.66
1659 1894 2.320339 CTACGCCTTCCTCGTCGACC 62.320 65.000 10.58 0.00 40.89 4.79
1790 2034 2.884997 TATCGTGCGCCCAAGCCAAT 62.885 55.000 4.18 0.00 36.02 3.16
1791 2035 4.781959 CGTGCGCCCAAGCCAATG 62.782 66.667 4.18 0.00 36.02 2.82
1800 2044 1.272092 CCCAAGCCAATGAGACCAAGA 60.272 52.381 0.00 0.00 0.00 3.02
1892 2136 1.144057 CGAAGGCTACGAGGGCAAT 59.856 57.895 0.00 0.00 0.00 3.56
2190 3009 3.520290 TTGCATAGGTAACCTCAGACG 57.480 47.619 0.00 0.00 34.61 4.18
2204 3115 3.558418 CCTCAGACGAGCTACTACTTCTC 59.442 52.174 0.00 0.00 38.00 2.87
2205 3116 4.185394 CTCAGACGAGCTACTACTTCTCA 58.815 47.826 0.00 0.00 31.00 3.27
2206 3117 4.576879 TCAGACGAGCTACTACTTCTCAA 58.423 43.478 0.00 0.00 0.00 3.02
2208 3119 6.346896 TCAGACGAGCTACTACTTCTCAATA 58.653 40.000 0.00 0.00 0.00 1.90
2212 3490 8.995220 AGACGAGCTACTACTTCTCAATATTAG 58.005 37.037 0.00 0.00 0.00 1.73
2228 3506 9.642327 CTCAATATTAGATGTTGGATCTGAGAG 57.358 37.037 0.00 0.00 32.92 3.20
2237 3515 3.728385 TGGATCTGAGAGTCTGAGACA 57.272 47.619 15.86 3.73 34.60 3.41
2240 3518 2.841442 TCTGAGAGTCTGAGACACGA 57.159 50.000 15.86 0.00 34.60 4.35
2245 6608 5.525745 TCTGAGAGTCTGAGACACGATTATC 59.474 44.000 15.86 1.50 34.60 1.75
2259 6622 9.088512 AGACACGATTATCTTCAATTTCAGTAC 57.911 33.333 0.00 0.00 0.00 2.73
2262 6625 9.694520 CACGATTATCTTCAATTTCAGTACTTG 57.305 33.333 0.00 0.00 0.00 3.16
2283 6661 2.352127 GCAATCCTGTTTCAGTGCTTCC 60.352 50.000 4.40 0.00 31.31 3.46
2284 6662 1.813513 ATCCTGTTTCAGTGCTTCCG 58.186 50.000 0.00 0.00 0.00 4.30
2289 6667 0.868406 GTTTCAGTGCTTCCGAGTGG 59.132 55.000 0.00 0.00 0.00 4.00
2290 6668 0.250295 TTTCAGTGCTTCCGAGTGGG 60.250 55.000 0.00 0.00 35.24 4.61
2291 6669 1.118965 TTCAGTGCTTCCGAGTGGGA 61.119 55.000 0.00 0.00 45.40 4.37
2305 6683 3.676324 CGAGTGGGATGAGTAAACTCCAC 60.676 52.174 7.63 8.73 42.20 4.02
2310 6688 5.817816 GTGGGATGAGTAAACTCCACTATTG 59.182 44.000 7.63 0.00 42.20 1.90
2707 7122 4.033358 CACAAGAACATCGTTAGGCTCATC 59.967 45.833 0.00 0.00 0.00 2.92
2762 7177 6.073440 GCTAGTGTACGAGTTCATTTCCAAAA 60.073 38.462 0.00 0.00 0.00 2.44
2812 7233 0.693049 GGGAGCCTCTCAACTTGGAA 59.307 55.000 0.00 0.00 31.08 3.53
2858 7279 4.760530 TCAGCACATGGTCTAGCTTATT 57.239 40.909 0.00 0.00 34.61 1.40
3110 7532 5.538053 TCATCTTAGAGGTCATTAGCAGGAG 59.462 44.000 0.00 0.00 0.00 3.69
3154 7576 7.654520 ACAATAACAGCTTAGTGACGAGTTTTA 59.345 33.333 0.15 0.00 33.14 1.52
3157 7579 5.169295 ACAGCTTAGTGACGAGTTTTATCC 58.831 41.667 0.00 0.00 0.00 2.59
3161 7583 6.152323 AGCTTAGTGACGAGTTTTATCCAGTA 59.848 38.462 0.00 0.00 0.00 2.74
3236 7658 3.385755 ACAGGAAATTTGCAGCTTCTTGT 59.614 39.130 12.54 13.16 35.34 3.16
3246 7668 1.728971 CAGCTTCTTGTTACTCTGGCG 59.271 52.381 0.00 0.00 0.00 5.69
3293 7715 4.097437 CCTTGATGTGGATCAAAGACCATG 59.903 45.833 0.00 0.00 45.89 3.66
3327 7749 1.813753 GGCGCGCCTTCTCACATTA 60.814 57.895 41.71 0.00 0.00 1.90
3422 7844 4.202141 TGTGCTCCTTCAAAGTTTGGAATG 60.202 41.667 15.47 1.60 0.00 2.67
3427 7849 4.588106 TCCTTCAAAGTTTGGAATGCATCA 59.412 37.500 15.47 0.00 0.00 3.07
3441 7863 5.481105 GAATGCATCAAATTTCTTCCCACA 58.519 37.500 0.00 0.00 0.00 4.17
3454 7876 1.073722 CCCACAGCAAAGCCAGAGA 59.926 57.895 0.00 0.00 0.00 3.10
3477 7899 2.562912 GCAACCATCCACGTGCAG 59.437 61.111 10.91 1.31 36.97 4.41
3533 7955 6.589907 GGCCACCATTAGTTTTAGAAAATGTG 59.410 38.462 0.00 0.00 0.00 3.21
3534 7956 7.151976 GCCACCATTAGTTTTAGAAAATGTGT 58.848 34.615 0.00 0.00 0.00 3.72
3535 7957 8.301002 GCCACCATTAGTTTTAGAAAATGTGTA 58.699 33.333 0.00 0.00 0.00 2.90
3536 7958 9.620660 CCACCATTAGTTTTAGAAAATGTGTAC 57.379 33.333 0.00 0.00 0.00 2.90
3585 8007 7.497579 TGTGTGTTTCATGTGACTAAATGTAGT 59.502 33.333 0.00 0.00 43.56 2.73
3645 8068 0.243636 CGATCCTTTGGGTTTGGCAC 59.756 55.000 0.00 0.00 0.00 5.01
3657 8080 0.480690 TTTGGCACCTGCTTTCCCTA 59.519 50.000 0.00 0.00 41.70 3.53
3674 8097 2.024941 CCCTATGCTTTCTTTCCCCTGT 60.025 50.000 0.00 0.00 0.00 4.00
3682 8105 3.943671 TTCTTTCCCCTGTCAACTTGA 57.056 42.857 0.00 0.00 0.00 3.02
3698 8121 6.641723 GTCAACTTGAGAGTTACAGGTTACTC 59.358 42.308 9.84 9.84 44.14 2.59
3708 8131 7.990886 AGAGTTACAGGTTACTCAAAATGTTGA 59.009 33.333 17.66 0.00 40.54 3.18
3712 8135 9.743057 TTACAGGTTACTCAAAATGTTGAATTG 57.257 29.630 0.00 0.00 43.18 2.32
3733 8156 0.526662 GTGGACTAGTGGAGACCGTG 59.473 60.000 0.00 0.00 42.38 4.94
3788 8211 9.512435 GTGGAAAAATCATCTATGATCAAACTG 57.488 33.333 0.00 0.00 46.22 3.16
3803 8226 8.033178 TGATCAAACTGGAAGGATGTGATATA 57.967 34.615 0.00 0.00 39.30 0.86
3810 8233 7.248976 ACTGGAAGGATGTGATATAGGTGATA 58.751 38.462 0.00 0.00 39.30 2.15
3824 8247 3.544684 AGGTGATAAATGATGCTTGCGA 58.455 40.909 0.00 0.00 0.00 5.10
3833 8256 6.570672 AAATGATGCTTGCGATATTCAGAT 57.429 33.333 0.00 0.00 0.00 2.90
3836 8259 3.614159 TGCTTGCGATATTCAGATTGC 57.386 42.857 0.00 0.00 36.83 3.56
3849 8272 5.885230 TTCAGATTGCAGTGAATTACCTG 57.115 39.130 0.00 0.51 0.00 4.00
3883 8306 2.182030 CGAGGCGGAAGAGACACC 59.818 66.667 0.00 0.00 0.00 4.16
3884 8307 2.344203 CGAGGCGGAAGAGACACCT 61.344 63.158 0.00 0.00 0.00 4.00
3886 8309 1.534235 AGGCGGAAGAGACACCTGT 60.534 57.895 0.00 0.00 0.00 4.00
3899 8322 2.887568 CCTGTGTGCTCGATCGGC 60.888 66.667 16.41 17.41 0.00 5.54
3956 8379 3.770666 GAAGATGACCTTCGACGATGAA 58.229 45.455 11.97 0.00 41.54 2.57
3978 8406 3.493303 GCCATGGGAGGGGAGGAC 61.493 72.222 15.13 0.00 0.00 3.85
4072 8501 1.302511 CCCGAGGTGAGTTGGGTTG 60.303 63.158 0.00 0.00 36.45 3.77
4075 8504 1.844130 GAGGTGAGTTGGGTTGGGT 59.156 57.895 0.00 0.00 0.00 4.51
4128 8557 2.683211 ATATGGGTTGGGCCAAGATC 57.317 50.000 21.62 12.51 39.65 2.75
4137 8566 0.039618 GGGCCAAGATCTTTGGGTGA 59.960 55.000 19.31 0.00 39.90 4.02
4168 8597 3.373877 CCACCCTACACCCTACTACATCT 60.374 52.174 0.00 0.00 0.00 2.90
4180 8609 2.374830 CTACATCTGCCCCTGAGCGG 62.375 65.000 0.00 0.00 40.71 5.52
4201 8630 1.036481 GGGACGAGGGTGGAGACTAC 61.036 65.000 0.00 0.00 0.00 2.73
4202 8631 1.036481 GGACGAGGGTGGAGACTACC 61.036 65.000 0.00 0.00 37.48 3.18
4203 8632 0.323178 GACGAGGGTGGAGACTACCA 60.323 60.000 6.62 0.00 40.03 3.25
4204 8633 0.113776 ACGAGGGTGGAGACTACCAA 59.886 55.000 6.62 0.00 41.87 3.67
4205 8634 0.531200 CGAGGGTGGAGACTACCAAC 59.469 60.000 6.62 0.00 45.92 3.77
4208 8637 1.595357 GGTGGAGACTACCAACCGG 59.405 63.158 0.00 0.00 41.35 5.28
4209 8638 1.079336 GTGGAGACTACCAACCGGC 60.079 63.158 0.00 0.00 41.87 6.13
4210 8639 2.183555 GGAGACTACCAACCGGCG 59.816 66.667 0.00 0.00 34.57 6.46
4211 8640 2.508663 GAGACTACCAACCGGCGC 60.509 66.667 0.00 0.00 34.57 6.53
4212 8641 4.078516 AGACTACCAACCGGCGCC 62.079 66.667 19.07 19.07 34.57 6.53
4237 8666 4.161295 CTGCGGGATCGGGAGCAA 62.161 66.667 4.96 0.00 39.26 3.91
4238 8667 4.161295 TGCGGGATCGGGAGCAAG 62.161 66.667 1.46 0.00 36.60 4.01
4241 8670 4.162690 GGGATCGGGAGCAAGCGT 62.163 66.667 0.00 0.00 0.00 5.07
4242 8671 2.125106 GGATCGGGAGCAAGCGTT 60.125 61.111 0.00 0.00 0.00 4.84
4243 8672 1.143183 GGATCGGGAGCAAGCGTTA 59.857 57.895 0.00 0.00 0.00 3.18
4244 8673 1.152383 GGATCGGGAGCAAGCGTTAC 61.152 60.000 0.00 0.00 0.00 2.50
4245 8674 1.480219 GATCGGGAGCAAGCGTTACG 61.480 60.000 0.00 0.00 0.00 3.18
4246 8675 2.901051 ATCGGGAGCAAGCGTTACGG 62.901 60.000 6.94 0.00 0.00 4.02
4247 8676 2.263540 GGGAGCAAGCGTTACGGA 59.736 61.111 6.94 0.00 0.00 4.69
4248 8677 1.810030 GGGAGCAAGCGTTACGGAG 60.810 63.158 6.94 0.00 0.00 4.63
4249 8678 2.453638 GGAGCAAGCGTTACGGAGC 61.454 63.158 6.94 0.00 0.00 4.70
4250 8679 2.434359 AGCAAGCGTTACGGAGCC 60.434 61.111 6.94 0.00 0.00 4.70
4251 8680 3.849953 GCAAGCGTTACGGAGCCG 61.850 66.667 6.94 7.48 46.03 5.52
4261 8690 2.513897 CGGAGCCGTGGGATTTCC 60.514 66.667 0.00 0.00 34.35 3.13
4271 8700 3.693411 GGATTTCCCTGCGCCAAA 58.307 55.556 4.18 0.00 0.00 3.28
4272 8701 1.971418 GGATTTCCCTGCGCCAAAA 59.029 52.632 4.18 0.03 0.00 2.44
4273 8702 0.320050 GGATTTCCCTGCGCCAAAAA 59.680 50.000 4.18 0.42 0.00 1.94
4303 8732 4.853924 AAAAAGTTGCATAGGACACTGG 57.146 40.909 0.00 0.00 0.00 4.00
4304 8733 1.826385 AAGTTGCATAGGACACTGGC 58.174 50.000 0.00 0.00 0.00 4.85
4305 8734 0.692476 AGTTGCATAGGACACTGGCA 59.308 50.000 0.00 0.00 36.82 4.92
4306 8735 1.089920 GTTGCATAGGACACTGGCAG 58.910 55.000 14.16 14.16 38.81 4.85
4307 8736 0.035152 TTGCATAGGACACTGGCAGG 60.035 55.000 20.34 10.34 38.81 4.85
4308 8737 0.909133 TGCATAGGACACTGGCAGGA 60.909 55.000 20.34 0.00 34.69 3.86
4309 8738 0.179062 GCATAGGACACTGGCAGGAG 60.179 60.000 20.34 13.35 0.00 3.69
4310 8739 1.489481 CATAGGACACTGGCAGGAGA 58.511 55.000 20.34 0.00 0.00 3.71
4311 8740 1.833630 CATAGGACACTGGCAGGAGAA 59.166 52.381 20.34 0.00 0.00 2.87
4312 8741 1.561643 TAGGACACTGGCAGGAGAAG 58.438 55.000 20.34 5.60 0.00 2.85
4313 8742 1.376553 GGACACTGGCAGGAGAAGC 60.377 63.158 20.34 6.27 0.00 3.86
4314 8743 1.739562 GACACTGGCAGGAGAAGCG 60.740 63.158 20.34 0.53 0.00 4.68
4315 8744 2.435586 CACTGGCAGGAGAAGCGG 60.436 66.667 20.34 0.00 0.00 5.52
4316 8745 4.400961 ACTGGCAGGAGAAGCGGC 62.401 66.667 20.34 0.00 0.00 6.53
4317 8746 4.093291 CTGGCAGGAGAAGCGGCT 62.093 66.667 6.61 0.00 0.00 5.52
4318 8747 4.087892 TGGCAGGAGAAGCGGCTC 62.088 66.667 1.45 0.00 0.00 4.70
4320 8749 4.135153 GCAGGAGAAGCGGCTCGA 62.135 66.667 1.45 0.00 35.74 4.04
4321 8750 2.103934 CAGGAGAAGCGGCTCGAG 59.896 66.667 8.45 8.45 35.74 4.04
4322 8751 3.144193 AGGAGAAGCGGCTCGAGG 61.144 66.667 15.58 0.00 35.74 4.63
4323 8752 3.453679 GGAGAAGCGGCTCGAGGT 61.454 66.667 15.58 0.00 35.74 3.85
4324 8753 2.202676 GAGAAGCGGCTCGAGGTG 60.203 66.667 15.58 0.00 0.00 4.00
4325 8754 4.443266 AGAAGCGGCTCGAGGTGC 62.443 66.667 15.58 0.00 0.00 5.01
4331 8760 4.521062 GGCTCGAGGTGCGCAGAT 62.521 66.667 12.22 0.67 40.61 2.90
4332 8761 2.510238 GCTCGAGGTGCGCAGATT 60.510 61.111 12.22 0.00 40.61 2.40
4333 8762 2.520904 GCTCGAGGTGCGCAGATTC 61.521 63.158 12.22 8.08 40.61 2.52
4334 8763 1.140589 CTCGAGGTGCGCAGATTCT 59.859 57.895 12.22 6.23 40.61 2.40
4335 8764 0.459237 CTCGAGGTGCGCAGATTCTT 60.459 55.000 12.22 0.00 40.61 2.52
4336 8765 0.815095 TCGAGGTGCGCAGATTCTTA 59.185 50.000 12.22 0.00 40.61 2.10
4337 8766 0.924090 CGAGGTGCGCAGATTCTTAC 59.076 55.000 12.22 0.00 0.00 2.34
4338 8767 1.291132 GAGGTGCGCAGATTCTTACC 58.709 55.000 12.22 5.67 0.00 2.85
4339 8768 0.107654 AGGTGCGCAGATTCTTACCC 60.108 55.000 12.22 4.78 0.00 3.69
4340 8769 0.392461 GGTGCGCAGATTCTTACCCA 60.392 55.000 12.22 0.00 0.00 4.51
4341 8770 0.727398 GTGCGCAGATTCTTACCCAC 59.273 55.000 12.22 0.00 0.00 4.61
4342 8771 0.613260 TGCGCAGATTCTTACCCACT 59.387 50.000 5.66 0.00 0.00 4.00
4343 8772 1.009829 GCGCAGATTCTTACCCACTG 58.990 55.000 0.30 0.00 0.00 3.66
4344 8773 1.656652 CGCAGATTCTTACCCACTGG 58.343 55.000 0.00 0.00 37.80 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.335673 TGTGATGTGTTTTTCTGAAACTAGTGA 59.664 33.333 1.58 0.00 0.00 3.41
3 4 7.471721 TGTGATGTGTTTTTCTGAAACTAGTG 58.528 34.615 1.58 0.00 0.00 2.74
4 5 7.336931 ACTGTGATGTGTTTTTCTGAAACTAGT 59.663 33.333 1.58 0.00 0.00 2.57
5 6 7.697691 ACTGTGATGTGTTTTTCTGAAACTAG 58.302 34.615 1.58 0.00 0.00 2.57
7 8 6.515272 ACTGTGATGTGTTTTTCTGAAACT 57.485 33.333 1.58 0.00 0.00 2.66
8 9 7.968405 AGTAACTGTGATGTGTTTTTCTGAAAC 59.032 33.333 1.58 0.00 0.00 2.78
9 10 8.050778 AGTAACTGTGATGTGTTTTTCTGAAA 57.949 30.769 0.00 0.00 0.00 2.69
10 11 7.201696 GGAGTAACTGTGATGTGTTTTTCTGAA 60.202 37.037 0.00 0.00 0.00 3.02
11 12 6.260050 GGAGTAACTGTGATGTGTTTTTCTGA 59.740 38.462 0.00 0.00 0.00 3.27
12 13 6.038161 TGGAGTAACTGTGATGTGTTTTTCTG 59.962 38.462 0.00 0.00 0.00 3.02
13 14 6.119536 TGGAGTAACTGTGATGTGTTTTTCT 58.880 36.000 0.00 0.00 0.00 2.52
14 15 6.371809 TGGAGTAACTGTGATGTGTTTTTC 57.628 37.500 0.00 0.00 0.00 2.29
15 16 6.959639 ATGGAGTAACTGTGATGTGTTTTT 57.040 33.333 0.00 0.00 0.00 1.94
16 17 6.545666 TCAATGGAGTAACTGTGATGTGTTTT 59.454 34.615 0.00 0.00 0.00 2.43
17 18 6.061441 TCAATGGAGTAACTGTGATGTGTTT 58.939 36.000 0.00 0.00 0.00 2.83
18 19 5.620206 TCAATGGAGTAACTGTGATGTGTT 58.380 37.500 0.00 0.00 0.00 3.32
19 20 5.227569 TCAATGGAGTAACTGTGATGTGT 57.772 39.130 0.00 0.00 0.00 3.72
20 21 5.934043 TCTTCAATGGAGTAACTGTGATGTG 59.066 40.000 0.00 0.00 0.00 3.21
21 22 6.114187 TCTTCAATGGAGTAACTGTGATGT 57.886 37.500 0.00 0.00 0.00 3.06
22 23 7.041167 TGTTTCTTCAATGGAGTAACTGTGATG 60.041 37.037 11.47 0.00 0.00 3.07
23 24 6.998074 TGTTTCTTCAATGGAGTAACTGTGAT 59.002 34.615 11.47 0.00 0.00 3.06
24 25 6.353323 TGTTTCTTCAATGGAGTAACTGTGA 58.647 36.000 11.47 0.00 0.00 3.58
25 26 6.618287 TGTTTCTTCAATGGAGTAACTGTG 57.382 37.500 11.47 0.00 0.00 3.66
26 27 7.823745 ATTGTTTCTTCAATGGAGTAACTGT 57.176 32.000 11.47 0.00 36.78 3.55
27 28 9.185192 GAAATTGTTTCTTCAATGGAGTAACTG 57.815 33.333 11.47 0.00 37.96 3.16
28 29 8.076178 CGAAATTGTTTCTTCAATGGAGTAACT 58.924 33.333 11.47 0.00 37.96 2.24
29 30 7.148967 GCGAAATTGTTTCTTCAATGGAGTAAC 60.149 37.037 4.33 4.33 37.96 2.50
30 31 6.861055 GCGAAATTGTTTCTTCAATGGAGTAA 59.139 34.615 0.00 0.00 37.96 2.24
31 32 6.016693 TGCGAAATTGTTTCTTCAATGGAGTA 60.017 34.615 0.00 0.00 37.96 2.59
32 33 5.221224 TGCGAAATTGTTTCTTCAATGGAGT 60.221 36.000 0.00 0.00 37.96 3.85
33 34 5.221880 TGCGAAATTGTTTCTTCAATGGAG 58.778 37.500 0.00 0.00 37.96 3.86
34 35 5.193663 TGCGAAATTGTTTCTTCAATGGA 57.806 34.783 0.00 0.00 37.96 3.41
35 36 5.613142 GCTTGCGAAATTGTTTCTTCAATGG 60.613 40.000 0.00 0.00 37.96 3.16
36 37 5.176223 AGCTTGCGAAATTGTTTCTTCAATG 59.824 36.000 0.00 0.00 37.96 2.82
37 38 5.176223 CAGCTTGCGAAATTGTTTCTTCAAT 59.824 36.000 0.00 0.00 39.35 2.57
38 39 4.503734 CAGCTTGCGAAATTGTTTCTTCAA 59.496 37.500 0.00 4.61 37.52 2.69
39 40 4.043750 CAGCTTGCGAAATTGTTTCTTCA 58.956 39.130 0.00 0.00 37.52 3.02
40 41 3.426525 CCAGCTTGCGAAATTGTTTCTTC 59.573 43.478 0.00 0.00 37.52 2.87
41 42 3.068024 TCCAGCTTGCGAAATTGTTTCTT 59.932 39.130 0.00 0.00 37.52 2.52
42 43 2.622942 TCCAGCTTGCGAAATTGTTTCT 59.377 40.909 0.00 0.00 37.52 2.52
43 44 3.011949 TCCAGCTTGCGAAATTGTTTC 57.988 42.857 0.00 0.00 36.32 2.78
44 45 3.451141 TTCCAGCTTGCGAAATTGTTT 57.549 38.095 0.00 0.00 0.00 2.83
45 46 3.665745 ATTCCAGCTTGCGAAATTGTT 57.334 38.095 0.00 0.00 0.00 2.83
46 47 4.398988 TCATATTCCAGCTTGCGAAATTGT 59.601 37.500 0.00 0.00 0.00 2.71
47 48 4.923893 TCATATTCCAGCTTGCGAAATTG 58.076 39.130 0.00 0.00 0.00 2.32
48 49 5.581126 TTCATATTCCAGCTTGCGAAATT 57.419 34.783 0.00 0.00 0.00 1.82
49 50 5.126061 AGTTTCATATTCCAGCTTGCGAAAT 59.874 36.000 0.00 0.00 0.00 2.17
50 51 4.458989 AGTTTCATATTCCAGCTTGCGAAA 59.541 37.500 0.00 0.00 0.00 3.46
51 52 4.009675 AGTTTCATATTCCAGCTTGCGAA 58.990 39.130 0.00 0.00 0.00 4.70
52 53 3.609853 AGTTTCATATTCCAGCTTGCGA 58.390 40.909 0.00 0.00 0.00 5.10
53 54 3.374988 TGAGTTTCATATTCCAGCTTGCG 59.625 43.478 0.00 0.00 0.00 4.85
54 55 4.156556 TGTGAGTTTCATATTCCAGCTTGC 59.843 41.667 0.00 0.00 0.00 4.01
55 56 5.885230 TGTGAGTTTCATATTCCAGCTTG 57.115 39.130 0.00 0.00 0.00 4.01
56 57 6.716628 TCTTTGTGAGTTTCATATTCCAGCTT 59.283 34.615 0.00 0.00 0.00 3.74
57 58 6.240894 TCTTTGTGAGTTTCATATTCCAGCT 58.759 36.000 0.00 0.00 0.00 4.24
58 59 6.500684 TCTTTGTGAGTTTCATATTCCAGC 57.499 37.500 0.00 0.00 0.00 4.85
59 60 9.185192 GTTTTCTTTGTGAGTTTCATATTCCAG 57.815 33.333 0.00 0.00 0.00 3.86
60 61 8.912988 AGTTTTCTTTGTGAGTTTCATATTCCA 58.087 29.630 0.00 0.00 0.00 3.53
190 191 9.232473 GATGGTCTTCTCTTGGTTAATTTTACT 57.768 33.333 0.00 0.00 0.00 2.24
191 192 9.010029 TGATGGTCTTCTCTTGGTTAATTTTAC 57.990 33.333 0.00 0.00 0.00 2.01
192 193 9.010029 GTGATGGTCTTCTCTTGGTTAATTTTA 57.990 33.333 0.00 0.00 0.00 1.52
193 194 7.039714 GGTGATGGTCTTCTCTTGGTTAATTTT 60.040 37.037 0.00 0.00 0.00 1.82
194 195 6.434340 GGTGATGGTCTTCTCTTGGTTAATTT 59.566 38.462 0.00 0.00 0.00 1.82
195 196 5.946377 GGTGATGGTCTTCTCTTGGTTAATT 59.054 40.000 0.00 0.00 0.00 1.40
196 197 5.501156 GGTGATGGTCTTCTCTTGGTTAAT 58.499 41.667 0.00 0.00 0.00 1.40
197 198 4.562757 CGGTGATGGTCTTCTCTTGGTTAA 60.563 45.833 0.00 0.00 0.00 2.01
198 199 3.056107 CGGTGATGGTCTTCTCTTGGTTA 60.056 47.826 0.00 0.00 0.00 2.85
199 200 2.289694 CGGTGATGGTCTTCTCTTGGTT 60.290 50.000 0.00 0.00 0.00 3.67
200 201 1.276421 CGGTGATGGTCTTCTCTTGGT 59.724 52.381 0.00 0.00 0.00 3.67
201 202 1.550524 TCGGTGATGGTCTTCTCTTGG 59.449 52.381 0.00 0.00 0.00 3.61
202 203 3.319137 TTCGGTGATGGTCTTCTCTTG 57.681 47.619 0.00 0.00 0.00 3.02
203 204 4.020218 TCATTTCGGTGATGGTCTTCTCTT 60.020 41.667 0.00 0.00 0.00 2.85
204 205 3.515502 TCATTTCGGTGATGGTCTTCTCT 59.484 43.478 0.00 0.00 0.00 3.10
205 206 3.619038 GTCATTTCGGTGATGGTCTTCTC 59.381 47.826 0.00 0.00 0.00 2.87
206 207 3.007940 TGTCATTTCGGTGATGGTCTTCT 59.992 43.478 0.00 0.00 0.00 2.85
207 208 3.334691 TGTCATTTCGGTGATGGTCTTC 58.665 45.455 0.00 0.00 0.00 2.87
208 209 3.417069 TGTCATTTCGGTGATGGTCTT 57.583 42.857 0.00 0.00 0.00 3.01
209 210 3.417069 TTGTCATTTCGGTGATGGTCT 57.583 42.857 0.00 0.00 0.00 3.85
210 211 4.497473 TTTTGTCATTTCGGTGATGGTC 57.503 40.909 0.00 0.00 0.00 4.02
211 212 4.927978 TTTTTGTCATTTCGGTGATGGT 57.072 36.364 0.00 0.00 0.00 3.55
212 213 7.148656 GGTTTATTTTTGTCATTTCGGTGATGG 60.149 37.037 0.00 0.00 0.00 3.51
213 214 7.410300 CGGTTTATTTTTGTCATTTCGGTGATG 60.410 37.037 0.00 0.00 0.00 3.07
214 215 6.584563 CGGTTTATTTTTGTCATTTCGGTGAT 59.415 34.615 0.00 0.00 0.00 3.06
215 216 5.915758 CGGTTTATTTTTGTCATTTCGGTGA 59.084 36.000 0.00 0.00 0.00 4.02
216 217 5.915758 TCGGTTTATTTTTGTCATTTCGGTG 59.084 36.000 0.00 0.00 0.00 4.94
217 218 6.074544 TCGGTTTATTTTTGTCATTTCGGT 57.925 33.333 0.00 0.00 0.00 4.69
218 219 6.088883 CCTTCGGTTTATTTTTGTCATTTCGG 59.911 38.462 0.00 0.00 0.00 4.30
219 220 6.858993 TCCTTCGGTTTATTTTTGTCATTTCG 59.141 34.615 0.00 0.00 0.00 3.46
220 221 8.484799 GTTCCTTCGGTTTATTTTTGTCATTTC 58.515 33.333 0.00 0.00 0.00 2.17
221 222 7.168469 CGTTCCTTCGGTTTATTTTTGTCATTT 59.832 33.333 0.00 0.00 0.00 2.32
222 223 6.639279 CGTTCCTTCGGTTTATTTTTGTCATT 59.361 34.615 0.00 0.00 0.00 2.57
223 224 6.146898 CGTTCCTTCGGTTTATTTTTGTCAT 58.853 36.000 0.00 0.00 0.00 3.06
224 225 5.512473 CGTTCCTTCGGTTTATTTTTGTCA 58.488 37.500 0.00 0.00 0.00 3.58
225 226 4.380678 GCGTTCCTTCGGTTTATTTTTGTC 59.619 41.667 0.00 0.00 0.00 3.18
226 227 4.202030 TGCGTTCCTTCGGTTTATTTTTGT 60.202 37.500 0.00 0.00 0.00 2.83
227 228 4.147479 GTGCGTTCCTTCGGTTTATTTTTG 59.853 41.667 0.00 0.00 0.00 2.44
228 229 4.292599 GTGCGTTCCTTCGGTTTATTTTT 58.707 39.130 0.00 0.00 0.00 1.94
229 230 3.607542 CGTGCGTTCCTTCGGTTTATTTT 60.608 43.478 0.00 0.00 0.00 1.82
230 231 2.096119 CGTGCGTTCCTTCGGTTTATTT 60.096 45.455 0.00 0.00 0.00 1.40
231 232 1.461897 CGTGCGTTCCTTCGGTTTATT 59.538 47.619 0.00 0.00 0.00 1.40
232 233 1.073177 CGTGCGTTCCTTCGGTTTAT 58.927 50.000 0.00 0.00 0.00 1.40
233 234 0.249405 ACGTGCGTTCCTTCGGTTTA 60.249 50.000 0.00 0.00 0.00 2.01
234 235 1.522130 ACGTGCGTTCCTTCGGTTT 60.522 52.632 0.00 0.00 0.00 3.27
235 236 2.107546 ACGTGCGTTCCTTCGGTT 59.892 55.556 0.00 0.00 0.00 4.44
236 237 2.660552 CACGTGCGTTCCTTCGGT 60.661 61.111 0.82 0.00 0.00 4.69
237 238 4.072088 GCACGTGCGTTCCTTCGG 62.072 66.667 26.77 0.00 0.00 4.30
247 248 0.640768 CGCTCTTAGTTAGCACGTGC 59.359 55.000 32.79 32.79 40.08 5.34
248 249 0.640768 GCGCTCTTAGTTAGCACGTG 59.359 55.000 12.28 12.28 40.08 4.49
249 250 0.526662 AGCGCTCTTAGTTAGCACGT 59.473 50.000 2.64 0.00 40.08 4.49
250 251 1.192793 GAGCGCTCTTAGTTAGCACG 58.807 55.000 29.88 0.00 40.08 5.34
251 252 1.921230 GTGAGCGCTCTTAGTTAGCAC 59.079 52.381 35.27 19.85 40.08 4.40
252 253 1.135083 GGTGAGCGCTCTTAGTTAGCA 60.135 52.381 35.27 12.21 40.08 3.49
253 254 1.562017 GGTGAGCGCTCTTAGTTAGC 58.438 55.000 35.27 20.82 36.60 3.09
254 255 1.400846 TCGGTGAGCGCTCTTAGTTAG 59.599 52.381 35.27 19.54 0.00 2.34
255 256 1.456296 TCGGTGAGCGCTCTTAGTTA 58.544 50.000 35.27 13.88 0.00 2.24
256 257 0.601558 TTCGGTGAGCGCTCTTAGTT 59.398 50.000 35.27 0.00 0.00 2.24
257 258 0.109226 GTTCGGTGAGCGCTCTTAGT 60.109 55.000 35.27 0.52 0.00 2.24
258 259 0.171455 AGTTCGGTGAGCGCTCTTAG 59.829 55.000 35.27 24.96 0.00 2.18
259 260 1.400846 CTAGTTCGGTGAGCGCTCTTA 59.599 52.381 35.27 16.24 0.00 2.10
260 261 0.171455 CTAGTTCGGTGAGCGCTCTT 59.829 55.000 35.27 15.43 0.00 2.85
261 262 1.658686 CCTAGTTCGGTGAGCGCTCT 61.659 60.000 35.27 17.68 0.00 4.09
262 263 1.226717 CCTAGTTCGGTGAGCGCTC 60.227 63.158 30.42 30.42 0.00 5.03
263 264 2.885861 CCTAGTTCGGTGAGCGCT 59.114 61.111 11.27 11.27 0.00 5.92
264 265 2.886124 GCCTAGTTCGGTGAGCGC 60.886 66.667 0.00 0.00 0.00 5.92
265 266 2.202756 GGCCTAGTTCGGTGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
266 267 2.202756 CGGCCTAGTTCGGTGAGC 60.203 66.667 0.00 0.00 0.00 4.26
267 268 1.433879 CTCGGCCTAGTTCGGTGAG 59.566 63.158 0.00 0.00 0.00 3.51
268 269 2.707849 GCTCGGCCTAGTTCGGTGA 61.708 63.158 6.11 0.00 0.00 4.02
269 270 2.202756 GCTCGGCCTAGTTCGGTG 60.203 66.667 6.11 0.00 0.00 4.94
270 271 3.459063 GGCTCGGCCTAGTTCGGT 61.459 66.667 6.11 0.00 46.69 4.69
280 281 2.563427 GTGCTTTTCTGGCTCGGC 59.437 61.111 0.00 0.00 0.00 5.54
281 282 2.863153 CGTGCTTTTCTGGCTCGG 59.137 61.111 0.00 0.00 41.11 4.63
282 283 2.174349 GCGTGCTTTTCTGGCTCG 59.826 61.111 0.00 0.00 45.40 5.03
283 284 0.673644 TAGGCGTGCTTTTCTGGCTC 60.674 55.000 0.00 0.00 38.31 4.70
284 285 0.035056 ATAGGCGTGCTTTTCTGGCT 60.035 50.000 0.00 0.00 40.61 4.75
285 286 0.811281 AATAGGCGTGCTTTTCTGGC 59.189 50.000 0.00 0.00 0.00 4.85
286 287 2.487762 TCAAATAGGCGTGCTTTTCTGG 59.512 45.455 0.00 0.00 0.00 3.86
287 288 3.426695 CCTCAAATAGGCGTGCTTTTCTG 60.427 47.826 0.00 0.00 38.97 3.02
288 289 2.749621 CCTCAAATAGGCGTGCTTTTCT 59.250 45.455 0.00 0.00 38.97 2.52
289 290 3.136808 CCTCAAATAGGCGTGCTTTTC 57.863 47.619 0.00 0.00 38.97 2.29
300 301 2.952310 GGCCCTTTACTGCCTCAAATAG 59.048 50.000 0.00 0.00 44.46 1.73
301 302 3.012934 GGCCCTTTACTGCCTCAAATA 57.987 47.619 0.00 0.00 44.46 1.40
302 303 1.852633 GGCCCTTTACTGCCTCAAAT 58.147 50.000 0.00 0.00 44.46 2.32
303 304 3.356814 GGCCCTTTACTGCCTCAAA 57.643 52.632 0.00 0.00 44.46 2.69
309 310 1.745489 CCTCGTGGCCCTTTACTGC 60.745 63.158 0.00 0.00 0.00 4.40
310 311 0.108138 CTCCTCGTGGCCCTTTACTG 60.108 60.000 0.00 0.00 0.00 2.74
311 312 1.900545 GCTCCTCGTGGCCCTTTACT 61.901 60.000 0.00 0.00 0.00 2.24
312 313 1.449778 GCTCCTCGTGGCCCTTTAC 60.450 63.158 0.00 0.00 0.00 2.01
313 314 1.612442 AGCTCCTCGTGGCCCTTTA 60.612 57.895 0.00 0.00 0.00 1.85
314 315 2.930562 AGCTCCTCGTGGCCCTTT 60.931 61.111 0.00 0.00 0.00 3.11
315 316 3.710722 CAGCTCCTCGTGGCCCTT 61.711 66.667 0.00 0.00 0.00 3.95
317 318 4.459089 GACAGCTCCTCGTGGCCC 62.459 72.222 0.00 0.00 0.00 5.80
318 319 4.803426 CGACAGCTCCTCGTGGCC 62.803 72.222 0.00 0.00 0.00 5.36
319 320 2.564553 AATCGACAGCTCCTCGTGGC 62.565 60.000 9.57 0.00 32.77 5.01
320 321 0.108615 AAATCGACAGCTCCTCGTGG 60.109 55.000 9.57 0.00 32.77 4.94
321 322 1.714794 AAAATCGACAGCTCCTCGTG 58.285 50.000 9.57 0.00 32.77 4.35
322 323 2.457366 AAAAATCGACAGCTCCTCGT 57.543 45.000 9.57 0.00 32.77 4.18
323 324 2.282820 GCTAAAAATCGACAGCTCCTCG 59.717 50.000 4.24 4.24 0.00 4.63
324 325 3.526534 AGCTAAAAATCGACAGCTCCTC 58.473 45.455 0.00 0.00 40.25 3.71
325 326 3.618690 AGCTAAAAATCGACAGCTCCT 57.381 42.857 0.00 0.00 40.25 3.69
326 327 4.181578 TGTAGCTAAAAATCGACAGCTCC 58.818 43.478 9.68 1.93 43.14 4.70
327 328 5.382573 CTGTAGCTAAAAATCGACAGCTC 57.617 43.478 9.68 4.85 43.14 4.09
330 331 3.857665 TCGCTGTAGCTAAAAATCGACAG 59.142 43.478 0.00 0.00 38.44 3.51
331 332 3.840468 TCGCTGTAGCTAAAAATCGACA 58.160 40.909 0.00 0.00 39.32 4.35
332 333 3.858238 ACTCGCTGTAGCTAAAAATCGAC 59.142 43.478 0.00 0.00 39.32 4.20
333 334 3.857665 CACTCGCTGTAGCTAAAAATCGA 59.142 43.478 0.00 0.00 39.32 3.59
334 335 3.612860 ACACTCGCTGTAGCTAAAAATCG 59.387 43.478 0.00 0.00 39.32 3.34
335 336 6.262323 CTACACTCGCTGTAGCTAAAAATC 57.738 41.667 0.00 0.00 44.71 2.17
345 346 1.868987 TTGCCGCTACACTCGCTGTA 61.869 55.000 0.00 0.00 33.91 2.74
346 347 3.220999 TTGCCGCTACACTCGCTGT 62.221 57.895 0.00 0.00 36.82 4.40
347 348 2.432456 TTGCCGCTACACTCGCTG 60.432 61.111 0.00 0.00 0.00 5.18
348 349 2.125912 CTTGCCGCTACACTCGCT 60.126 61.111 0.00 0.00 0.00 4.93
349 350 3.854459 GCTTGCCGCTACACTCGC 61.854 66.667 0.00 0.00 35.14 5.03
350 351 3.188786 GGCTTGCCGCTACACTCG 61.189 66.667 0.00 0.00 39.13 4.18
351 352 1.671054 TTGGCTTGCCGCTACACTC 60.671 57.895 7.18 0.00 39.13 3.51
352 353 1.966451 GTTGGCTTGCCGCTACACT 60.966 57.895 7.18 0.00 39.13 3.55
353 354 1.791103 TTGTTGGCTTGCCGCTACAC 61.791 55.000 7.18 0.00 39.13 2.90
354 355 1.527148 TTGTTGGCTTGCCGCTACA 60.527 52.632 7.18 8.28 39.13 2.74
355 356 1.081442 GTTGTTGGCTTGCCGCTAC 60.081 57.895 7.18 5.90 39.13 3.58
356 357 2.612567 CGTTGTTGGCTTGCCGCTA 61.613 57.895 7.18 0.00 39.13 4.26
357 358 3.964875 CGTTGTTGGCTTGCCGCT 61.965 61.111 7.18 0.00 39.13 5.52
358 359 4.999939 CCGTTGTTGGCTTGCCGC 63.000 66.667 7.18 3.37 38.13 6.53
420 421 1.134580 ACTCACTCATCATTGCCGGAG 60.135 52.381 5.05 0.00 0.00 4.63
446 448 2.774234 ACCCGACCTCTGATGAATGATT 59.226 45.455 0.00 0.00 0.00 2.57
451 453 0.036388 GCAACCCGACCTCTGATGAA 60.036 55.000 0.00 0.00 0.00 2.57
464 466 1.362355 CTGACGGTTTTGGCAACCC 59.638 57.895 0.00 1.82 36.99 4.11
475 477 0.108585 AAACAGCCATGACTGACGGT 59.891 50.000 16.61 0.00 40.25 4.83
479 481 4.644234 TGAAAAGAAAACAGCCATGACTGA 59.356 37.500 16.61 0.00 40.25 3.41
481 483 5.596836 TTGAAAAGAAAACAGCCATGACT 57.403 34.783 0.00 0.00 0.00 3.41
482 484 5.117592 CGATTGAAAAGAAAACAGCCATGAC 59.882 40.000 0.00 0.00 0.00 3.06
483 485 5.009510 TCGATTGAAAAGAAAACAGCCATGA 59.990 36.000 0.00 0.00 0.00 3.07
484 486 5.221880 TCGATTGAAAAGAAAACAGCCATG 58.778 37.500 0.00 0.00 0.00 3.66
485 487 5.452078 TCGATTGAAAAGAAAACAGCCAT 57.548 34.783 0.00 0.00 0.00 4.40
486 488 4.909696 TCGATTGAAAAGAAAACAGCCA 57.090 36.364 0.00 0.00 0.00 4.75
487 489 4.148871 GCTTCGATTGAAAAGAAAACAGCC 59.851 41.667 0.00 0.00 32.66 4.85
488 490 4.978580 AGCTTCGATTGAAAAGAAAACAGC 59.021 37.500 0.00 0.00 32.66 4.40
492 494 6.373779 CAGCTAGCTTCGATTGAAAAGAAAA 58.626 36.000 16.46 0.00 32.66 2.29
502 504 1.227380 CGGGCAGCTAGCTTCGATT 60.227 57.895 16.46 0.00 44.79 3.34
564 566 8.397906 CCAAGGATTGTTTTTCTTTTTCTTTCC 58.602 33.333 0.00 0.00 46.99 3.13
575 577 5.745312 AAGGGATCCAAGGATTGTTTTTC 57.255 39.130 15.23 0.00 46.99 2.29
576 578 5.606329 TCAAAGGGATCCAAGGATTGTTTTT 59.394 36.000 15.23 0.66 46.99 1.94
642 654 1.742880 GCGCTGAGCATCACTTGGA 60.743 57.895 4.88 0.00 42.56 3.53
659 671 4.037089 TGGTATTCTTGATCACATGCATGC 59.963 41.667 26.53 11.82 0.00 4.06
700 712 9.860650 ACCACTTGAATGCCTTTTGTATATATA 57.139 29.630 0.00 0.00 0.00 0.86
701 713 8.766994 ACCACTTGAATGCCTTTTGTATATAT 57.233 30.769 0.00 0.00 0.00 0.86
713 725 4.338400 GGAAAGGTATACCACTTGAATGCC 59.662 45.833 23.87 9.46 38.89 4.40
714 726 4.947388 TGGAAAGGTATACCACTTGAATGC 59.053 41.667 23.87 7.26 38.89 3.56
723 735 3.074687 TGCCAAAGTGGAAAGGTATACCA 59.925 43.478 23.87 0.00 40.96 3.25
724 736 3.442625 GTGCCAAAGTGGAAAGGTATACC 59.557 47.826 14.54 14.54 40.96 2.73
725 737 4.076394 TGTGCCAAAGTGGAAAGGTATAC 58.924 43.478 0.00 0.00 40.96 1.47
726 738 4.374689 TGTGCCAAAGTGGAAAGGTATA 57.625 40.909 0.00 0.00 40.96 1.47
727 739 3.237268 TGTGCCAAAGTGGAAAGGTAT 57.763 42.857 0.00 0.00 40.96 2.73
728 740 2.738587 TGTGCCAAAGTGGAAAGGTA 57.261 45.000 0.00 0.00 40.96 3.08
730 742 3.157087 AGTATGTGCCAAAGTGGAAAGG 58.843 45.455 0.00 0.00 40.96 3.11
731 743 3.191371 GGAGTATGTGCCAAAGTGGAAAG 59.809 47.826 0.00 0.00 40.96 2.62
732 744 3.153919 GGAGTATGTGCCAAAGTGGAAA 58.846 45.455 0.00 0.00 40.96 3.13
733 745 2.107378 TGGAGTATGTGCCAAAGTGGAA 59.893 45.455 0.00 0.00 40.96 3.53
734 746 1.702401 TGGAGTATGTGCCAAAGTGGA 59.298 47.619 0.00 0.00 40.96 4.02
735 747 1.812571 GTGGAGTATGTGCCAAAGTGG 59.187 52.381 0.00 0.00 41.55 4.00
736 748 2.503331 TGTGGAGTATGTGCCAAAGTG 58.497 47.619 0.00 0.00 35.63 3.16
737 749 2.949177 TGTGGAGTATGTGCCAAAGT 57.051 45.000 0.00 0.00 35.63 2.66
738 750 3.305335 GGTTTGTGGAGTATGTGCCAAAG 60.305 47.826 0.00 0.00 35.63 2.77
739 751 2.625790 GGTTTGTGGAGTATGTGCCAAA 59.374 45.455 0.00 0.00 35.63 3.28
740 752 2.235016 GGTTTGTGGAGTATGTGCCAA 58.765 47.619 0.00 0.00 35.63 4.52
741 753 1.880221 CGGTTTGTGGAGTATGTGCCA 60.880 52.381 0.00 0.00 0.00 4.92
742 754 0.802494 CGGTTTGTGGAGTATGTGCC 59.198 55.000 0.00 0.00 0.00 5.01
743 755 1.732259 CTCGGTTTGTGGAGTATGTGC 59.268 52.381 0.00 0.00 0.00 4.57
744 756 2.736721 CACTCGGTTTGTGGAGTATGTG 59.263 50.000 0.00 0.00 41.37 3.21
745 757 2.631062 TCACTCGGTTTGTGGAGTATGT 59.369 45.455 0.00 0.00 41.37 2.29
746 758 3.254060 CTCACTCGGTTTGTGGAGTATG 58.746 50.000 0.00 0.00 41.37 2.39
747 759 2.353803 GCTCACTCGGTTTGTGGAGTAT 60.354 50.000 0.00 0.00 41.37 2.12
748 760 1.000506 GCTCACTCGGTTTGTGGAGTA 59.999 52.381 0.00 0.00 41.37 2.59
749 761 0.249911 GCTCACTCGGTTTGTGGAGT 60.250 55.000 0.00 0.00 43.99 3.85
750 762 0.249868 TGCTCACTCGGTTTGTGGAG 60.250 55.000 0.00 0.00 36.21 3.86
751 763 0.179234 TTGCTCACTCGGTTTGTGGA 59.821 50.000 0.00 0.00 36.21 4.02
752 764 1.021202 TTTGCTCACTCGGTTTGTGG 58.979 50.000 0.00 0.00 36.21 4.17
753 765 2.549754 AGATTTGCTCACTCGGTTTGTG 59.450 45.455 0.00 0.00 36.82 3.33
754 766 2.851195 AGATTTGCTCACTCGGTTTGT 58.149 42.857 0.00 0.00 0.00 2.83
811 827 3.612919 CGTATGGGACGCATCACG 58.387 61.111 8.47 12.60 46.27 4.35
819 835 2.607282 CCGAGATAGCAACGTATGGGAC 60.607 54.545 0.00 0.00 0.00 4.46
822 1017 1.419374 GCCGAGATAGCAACGTATGG 58.581 55.000 0.00 0.00 0.00 2.74
834 1029 0.536724 TATATGCATGCGGCCGAGAT 59.463 50.000 33.48 17.46 43.89 2.75
844 1039 7.429374 TCTTTCCCTCCTCTATATATGCATG 57.571 40.000 10.16 0.00 0.00 4.06
929 1128 6.238320 CCAGCTGATGATTTAACTACAGAAGC 60.238 42.308 17.39 0.00 0.00 3.86
930 1129 6.820656 ACCAGCTGATGATTTAACTACAGAAG 59.179 38.462 17.39 0.00 0.00 2.85
931 1130 6.711277 ACCAGCTGATGATTTAACTACAGAA 58.289 36.000 17.39 0.00 0.00 3.02
932 1131 6.299805 ACCAGCTGATGATTTAACTACAGA 57.700 37.500 17.39 0.00 0.00 3.41
933 1132 6.676456 GCAACCAGCTGATGATTTAACTACAG 60.676 42.308 17.39 0.00 41.15 2.74
934 1133 5.123820 GCAACCAGCTGATGATTTAACTACA 59.876 40.000 17.39 0.00 41.15 2.74
935 1134 5.449177 GGCAACCAGCTGATGATTTAACTAC 60.449 44.000 17.39 0.00 44.79 2.73
936 1135 4.640201 GGCAACCAGCTGATGATTTAACTA 59.360 41.667 17.39 0.00 44.79 2.24
937 1136 3.445096 GGCAACCAGCTGATGATTTAACT 59.555 43.478 17.39 0.00 44.79 2.24
938 1137 3.193267 TGGCAACCAGCTGATGATTTAAC 59.807 43.478 17.39 0.10 44.79 2.01
939 1138 3.429492 TGGCAACCAGCTGATGATTTAA 58.571 40.909 17.39 0.00 44.79 1.52
940 1139 3.018856 CTGGCAACCAGCTGATGATTTA 58.981 45.455 17.39 1.15 45.13 1.40
941 1140 1.822990 CTGGCAACCAGCTGATGATTT 59.177 47.619 17.39 0.00 45.13 2.17
942 1141 1.471119 CTGGCAACCAGCTGATGATT 58.529 50.000 17.39 0.66 45.13 2.57
958 1157 1.284982 CTGCCGACTGACGTTTCTGG 61.285 60.000 0.00 0.00 40.78 3.86
961 1160 2.668280 GCCTGCCGACTGACGTTTC 61.668 63.158 0.00 0.00 40.78 2.78
995 1199 3.213206 AGAAGGCAGTCAACATGTTGA 57.787 42.857 32.36 32.36 46.27 3.18
999 1203 1.884579 AGCAAGAAGGCAGTCAACATG 59.115 47.619 0.00 0.00 35.83 3.21
1057 1261 4.933064 CTCGGGCGTCTCGATGGC 62.933 72.222 2.39 4.27 41.61 4.40
1084 1288 3.573772 CTTGACAGCCACGAGCCGA 62.574 63.158 1.50 0.00 45.47 5.54
1085 1289 3.114616 CTTGACAGCCACGAGCCG 61.115 66.667 0.00 0.00 45.47 5.52
1612 1847 0.942962 GCTGTAGTCCATCATGCTGC 59.057 55.000 0.00 0.00 0.00 5.25
1659 1894 0.389426 CGGAAGGTGTAGTTGGTCCG 60.389 60.000 0.00 0.00 41.71 4.79
1790 2034 1.272490 CAGGCGTACTTCTTGGTCTCA 59.728 52.381 0.00 0.00 0.00 3.27
1791 2035 1.997669 CAGGCGTACTTCTTGGTCTC 58.002 55.000 0.00 0.00 0.00 3.36
1800 2044 2.266055 GCTCAGGCAGGCGTACTT 59.734 61.111 0.00 0.00 38.54 2.24
1892 2136 2.881539 ATCCGTCGACGAGGTAGGCA 62.882 60.000 37.65 11.81 43.02 4.75
2007 2820 4.687483 CACATTCATCTATATCTGTGCGCA 59.313 41.667 5.66 5.66 0.00 6.09
2204 3115 9.421806 GACTCTCAGATCCAACATCTAATATTG 57.578 37.037 0.00 0.00 0.00 1.90
2205 3116 9.378504 AGACTCTCAGATCCAACATCTAATATT 57.621 33.333 0.00 0.00 0.00 1.28
2206 3117 8.805175 CAGACTCTCAGATCCAACATCTAATAT 58.195 37.037 0.00 0.00 0.00 1.28
2208 3119 6.838090 TCAGACTCTCAGATCCAACATCTAAT 59.162 38.462 0.00 0.00 0.00 1.73
2212 3490 4.644234 TCTCAGACTCTCAGATCCAACATC 59.356 45.833 0.00 0.00 0.00 3.06
2218 3496 2.354510 CGTGTCTCAGACTCTCAGATCC 59.645 54.545 6.33 0.00 33.15 3.36
2228 3506 7.763172 AATTGAAGATAATCGTGTCTCAGAC 57.237 36.000 0.00 0.00 0.00 3.51
2237 3515 8.391106 GCAAGTACTGAAATTGAAGATAATCGT 58.609 33.333 0.00 0.00 0.00 3.73
2245 6608 6.805271 CAGGATTGCAAGTACTGAAATTGAAG 59.195 38.462 17.91 0.00 32.90 3.02
2259 6622 2.295349 AGCACTGAAACAGGATTGCAAG 59.705 45.455 4.94 0.00 34.74 4.01
2262 6625 2.352127 GGAAGCACTGAAACAGGATTGC 60.352 50.000 0.00 0.00 35.51 3.56
2267 6630 1.151668 CTCGGAAGCACTGAAACAGG 58.848 55.000 0.00 0.00 35.51 4.00
2283 6661 2.496070 TGGAGTTTACTCATCCCACTCG 59.504 50.000 11.67 0.00 44.60 4.18
2284 6662 3.515901 AGTGGAGTTTACTCATCCCACTC 59.484 47.826 12.68 0.00 44.60 3.51
2289 6667 6.879400 AGTCAATAGTGGAGTTTACTCATCC 58.121 40.000 11.67 0.00 44.60 3.51
2290 6668 8.904834 TCTAGTCAATAGTGGAGTTTACTCATC 58.095 37.037 11.67 4.33 37.46 2.92
2291 6669 8.824756 TCTAGTCAATAGTGGAGTTTACTCAT 57.175 34.615 11.67 0.54 37.46 2.90
2323 6718 9.642312 CAAAGGTAAACGAAAACTTCTTACTAC 57.358 33.333 0.00 0.00 0.00 2.73
2326 6730 7.191551 AGCAAAGGTAAACGAAAACTTCTTAC 58.808 34.615 0.00 0.00 0.00 2.34
2333 6737 6.309494 ACAAAGAAGCAAAGGTAAACGAAAAC 59.691 34.615 0.00 0.00 0.00 2.43
2338 6742 3.485743 GCACAAAGAAGCAAAGGTAAACG 59.514 43.478 0.00 0.00 0.00 3.60
2707 7122 1.156736 CCACTTCTAGGCAACAACCG 58.843 55.000 0.00 0.00 41.41 4.44
2812 7233 2.751166 AGACAATGCTTAGACGCACT 57.249 45.000 0.00 0.00 43.61 4.40
2858 7279 1.824230 GGTATGGGCTTGTGAATGCAA 59.176 47.619 0.00 0.00 0.00 4.08
3154 7576 4.993705 TTCCTTCTTTGTGGTACTGGAT 57.006 40.909 0.00 0.00 0.00 3.41
3157 7579 6.693315 TTTCTTTCCTTCTTTGTGGTACTG 57.307 37.500 0.00 0.00 0.00 2.74
3161 7583 4.023291 TGCTTTCTTTCCTTCTTTGTGGT 58.977 39.130 0.00 0.00 0.00 4.16
3226 7648 1.728971 CGCCAGAGTAACAAGAAGCTG 59.271 52.381 0.00 0.00 0.00 4.24
3246 7668 1.017387 GACATTCCACAGCGATTCCC 58.983 55.000 0.00 0.00 0.00 3.97
3293 7715 1.626654 CGCCACAACGTCTGTCATCC 61.627 60.000 0.00 0.00 35.47 3.51
3327 7749 7.724305 AAGTTACAACACACGTGATCTATTT 57.276 32.000 25.01 2.53 0.00 1.40
3422 7844 3.256558 GCTGTGGGAAGAAATTTGATGC 58.743 45.455 0.00 0.00 0.00 3.91
3427 7849 3.494924 GGCTTTGCTGTGGGAAGAAATTT 60.495 43.478 0.00 0.00 0.00 1.82
3441 7863 0.680280 CCATGCTCTCTGGCTTTGCT 60.680 55.000 0.00 0.00 0.00 3.91
3477 7899 5.760743 GCTTCTCATACAATAAGGGAAGGTC 59.239 44.000 0.00 0.00 32.18 3.85
3533 7955 6.256757 CAGTTACTCCCTACAGTACTACGTAC 59.743 46.154 0.00 0.00 39.10 3.67
3534 7956 6.070767 ACAGTTACTCCCTACAGTACTACGTA 60.071 42.308 0.00 0.00 0.00 3.57
3535 7957 5.181748 CAGTTACTCCCTACAGTACTACGT 58.818 45.833 0.00 0.00 0.00 3.57
3536 7958 5.064452 CACAGTTACTCCCTACAGTACTACG 59.936 48.000 0.00 0.00 0.00 3.51
3549 7971 4.574828 ACATGAAACACACACAGTTACTCC 59.425 41.667 0.00 0.00 0.00 3.85
3585 8007 5.977635 CAGATTGGGACACATTCTGTACTA 58.022 41.667 17.72 0.00 45.68 1.82
3592 8014 1.106285 GGGCAGATTGGGACACATTC 58.894 55.000 0.00 0.00 39.29 2.67
3645 8068 3.010200 AGAAAGCATAGGGAAAGCAGG 57.990 47.619 0.00 0.00 0.00 4.85
3657 8080 2.893489 GTTGACAGGGGAAAGAAAGCAT 59.107 45.455 0.00 0.00 0.00 3.79
3674 8097 6.322969 TGAGTAACCTGTAACTCTCAAGTTGA 59.677 38.462 5.25 5.25 45.37 3.18
3682 8105 7.990886 TCAACATTTTGAGTAACCTGTAACTCT 59.009 33.333 4.32 0.00 42.17 3.24
3698 8121 7.592533 CACTAGTCCACTCAATTCAACATTTTG 59.407 37.037 0.00 0.00 0.00 2.44
3708 8131 3.515901 GGTCTCCACTAGTCCACTCAATT 59.484 47.826 0.00 0.00 33.92 2.32
3712 8135 1.096416 CGGTCTCCACTAGTCCACTC 58.904 60.000 0.00 0.00 33.38 3.51
3733 8156 3.064931 CCTTCCTAGACCAAACACGTTC 58.935 50.000 0.00 0.00 0.00 3.95
3779 8202 7.605691 CCTATATCACATCCTTCCAGTTTGATC 59.394 40.741 0.00 0.00 0.00 2.92
3784 8207 5.905331 TCACCTATATCACATCCTTCCAGTT 59.095 40.000 0.00 0.00 0.00 3.16
3788 8211 9.388506 CATTTATCACCTATATCACATCCTTCC 57.611 37.037 0.00 0.00 0.00 3.46
3803 8226 3.544684 TCGCAAGCATCATTTATCACCT 58.455 40.909 0.00 0.00 37.18 4.00
3810 8233 6.570672 ATCTGAATATCGCAAGCATCATTT 57.429 33.333 0.00 0.00 37.18 2.32
3824 8247 7.776969 ACAGGTAATTCACTGCAATCTGAATAT 59.223 33.333 12.14 7.38 36.33 1.28
3833 8256 2.805671 CACGACAGGTAATTCACTGCAA 59.194 45.455 8.71 0.00 38.25 4.08
3836 8259 3.254060 CTCCACGACAGGTAATTCACTG 58.746 50.000 7.54 7.54 40.48 3.66
3883 8306 2.125952 TGCCGATCGAGCACACAG 60.126 61.111 22.05 3.66 34.69 3.66
3884 8307 2.125952 CTGCCGATCGAGCACACA 60.126 61.111 22.05 8.39 36.01 3.72
3886 8309 3.995219 CTGCTGCCGATCGAGCACA 62.995 63.158 23.13 21.55 40.30 4.57
3953 8376 1.227102 CCTCCCATGGCCGAATTCA 59.773 57.895 6.09 0.00 0.00 2.57
3954 8377 1.529244 CCCTCCCATGGCCGAATTC 60.529 63.158 6.09 0.00 0.00 2.17
3956 8379 3.501911 CCCCTCCCATGGCCGAAT 61.502 66.667 6.09 0.00 0.00 3.34
3990 8418 1.302033 AGCAACTGAAGCACCTCGG 60.302 57.895 0.00 0.00 0.00 4.63
4053 8482 3.192103 AACCCAACTCACCTCGGGC 62.192 63.158 0.00 0.00 42.97 6.13
4054 8483 1.302511 CAACCCAACTCACCTCGGG 60.303 63.158 0.00 0.00 44.88 5.14
4094 8523 7.039784 CCCAACCCATATACCTTATGAACAATG 60.040 40.741 0.00 0.00 0.00 2.82
4103 8532 2.790483 TGGCCCAACCCATATACCTTA 58.210 47.619 0.00 0.00 37.83 2.69
4106 8535 1.497286 TCTTGGCCCAACCCATATACC 59.503 52.381 0.00 0.00 37.83 2.73
4113 8542 0.897621 CAAAGATCTTGGCCCAACCC 59.102 55.000 9.17 0.00 37.83 4.11
4142 8571 2.573791 TAGGGTGTAGGGTGGGGCT 61.574 63.158 0.00 0.00 0.00 5.19
4143 8572 2.041596 TAGGGTGTAGGGTGGGGC 59.958 66.667 0.00 0.00 0.00 5.80
4186 8615 0.531200 GTTGGTAGTCTCCACCCTCG 59.469 60.000 0.00 0.00 37.20 4.63
4220 8649 4.161295 TTGCTCCCGATCCCGCAG 62.161 66.667 0.00 0.00 33.48 5.18
4221 8650 4.161295 CTTGCTCCCGATCCCGCA 62.161 66.667 0.00 0.00 0.00 5.69
4224 8653 2.306255 TAACGCTTGCTCCCGATCCC 62.306 60.000 0.00 0.00 0.00 3.85
4225 8654 1.143183 TAACGCTTGCTCCCGATCC 59.857 57.895 0.00 0.00 0.00 3.36
4226 8655 1.480219 CGTAACGCTTGCTCCCGATC 61.480 60.000 0.00 0.00 0.00 3.69
4227 8656 1.518572 CGTAACGCTTGCTCCCGAT 60.519 57.895 0.00 0.00 0.00 4.18
4228 8657 2.126228 CGTAACGCTTGCTCCCGA 60.126 61.111 0.00 0.00 0.00 5.14
4229 8658 3.186047 CCGTAACGCTTGCTCCCG 61.186 66.667 0.00 0.00 0.00 5.14
4230 8659 1.810030 CTCCGTAACGCTTGCTCCC 60.810 63.158 0.00 0.00 0.00 4.30
4231 8660 2.453638 GCTCCGTAACGCTTGCTCC 61.454 63.158 0.00 0.00 0.00 4.70
4232 8661 2.453638 GGCTCCGTAACGCTTGCTC 61.454 63.158 0.00 0.00 0.00 4.26
4233 8662 2.434359 GGCTCCGTAACGCTTGCT 60.434 61.111 0.00 0.00 0.00 3.91
4234 8663 3.849953 CGGCTCCGTAACGCTTGC 61.850 66.667 0.00 0.00 34.35 4.01
4244 8673 2.513897 GGAAATCCCACGGCTCCG 60.514 66.667 6.79 6.79 46.03 4.63
4254 8683 0.320050 TTTTTGGCGCAGGGAAATCC 59.680 50.000 10.83 0.00 0.00 3.01
4255 8684 3.904586 TTTTTGGCGCAGGGAAATC 57.095 47.368 10.83 0.00 0.00 2.17
4282 8711 3.005791 GCCAGTGTCCTATGCAACTTTTT 59.994 43.478 0.00 0.00 0.00 1.94
4283 8712 2.558359 GCCAGTGTCCTATGCAACTTTT 59.442 45.455 0.00 0.00 0.00 2.27
4284 8713 2.162681 GCCAGTGTCCTATGCAACTTT 58.837 47.619 0.00 0.00 0.00 2.66
4285 8714 1.073763 TGCCAGTGTCCTATGCAACTT 59.926 47.619 0.00 0.00 0.00 2.66
4286 8715 0.692476 TGCCAGTGTCCTATGCAACT 59.308 50.000 0.00 0.00 0.00 3.16
4287 8716 1.089920 CTGCCAGTGTCCTATGCAAC 58.910 55.000 0.00 0.00 30.10 4.17
4288 8717 0.035152 CCTGCCAGTGTCCTATGCAA 60.035 55.000 0.00 0.00 30.10 4.08
4289 8718 0.909133 TCCTGCCAGTGTCCTATGCA 60.909 55.000 0.00 0.00 0.00 3.96
4290 8719 0.179062 CTCCTGCCAGTGTCCTATGC 60.179 60.000 0.00 0.00 0.00 3.14
4291 8720 1.489481 TCTCCTGCCAGTGTCCTATG 58.511 55.000 0.00 0.00 0.00 2.23
4292 8721 2.114616 CTTCTCCTGCCAGTGTCCTAT 58.885 52.381 0.00 0.00 0.00 2.57
4293 8722 1.561643 CTTCTCCTGCCAGTGTCCTA 58.438 55.000 0.00 0.00 0.00 2.94
4294 8723 1.835927 GCTTCTCCTGCCAGTGTCCT 61.836 60.000 0.00 0.00 0.00 3.85
4295 8724 1.376553 GCTTCTCCTGCCAGTGTCC 60.377 63.158 0.00 0.00 0.00 4.02
4296 8725 1.739562 CGCTTCTCCTGCCAGTGTC 60.740 63.158 0.00 0.00 0.00 3.67
4297 8726 2.345244 CGCTTCTCCTGCCAGTGT 59.655 61.111 0.00 0.00 0.00 3.55
4298 8727 2.435586 CCGCTTCTCCTGCCAGTG 60.436 66.667 0.00 0.00 0.00 3.66
4299 8728 4.400961 GCCGCTTCTCCTGCCAGT 62.401 66.667 0.00 0.00 0.00 4.00
4300 8729 4.093291 AGCCGCTTCTCCTGCCAG 62.093 66.667 0.00 0.00 0.00 4.85
4301 8730 4.087892 GAGCCGCTTCTCCTGCCA 62.088 66.667 0.00 0.00 0.00 4.92
4303 8732 4.135153 TCGAGCCGCTTCTCCTGC 62.135 66.667 0.00 0.00 0.00 4.85
4304 8733 2.103934 CTCGAGCCGCTTCTCCTG 59.896 66.667 0.00 0.00 0.00 3.86
4305 8734 3.144193 CCTCGAGCCGCTTCTCCT 61.144 66.667 6.99 0.00 0.00 3.69
4306 8735 3.453679 ACCTCGAGCCGCTTCTCC 61.454 66.667 6.99 0.00 0.00 3.71
4307 8736 2.202676 CACCTCGAGCCGCTTCTC 60.203 66.667 6.99 0.00 0.00 2.87
4308 8737 4.443266 GCACCTCGAGCCGCTTCT 62.443 66.667 6.99 0.00 0.00 2.85
4314 8743 4.521062 ATCTGCGCACCTCGAGCC 62.521 66.667 5.66 0.00 40.17 4.70
4315 8744 2.510238 AATCTGCGCACCTCGAGC 60.510 61.111 5.66 0.00 41.67 5.03
4316 8745 0.459237 AAGAATCTGCGCACCTCGAG 60.459 55.000 5.66 5.13 41.67 4.04
4317 8746 0.815095 TAAGAATCTGCGCACCTCGA 59.185 50.000 5.66 1.76 41.67 4.04
4318 8747 0.924090 GTAAGAATCTGCGCACCTCG 59.076 55.000 5.66 0.00 42.12 4.63
4319 8748 1.291132 GGTAAGAATCTGCGCACCTC 58.709 55.000 5.66 2.87 0.00 3.85
4320 8749 0.107654 GGGTAAGAATCTGCGCACCT 60.108 55.000 5.66 0.00 0.00 4.00
4321 8750 0.392461 TGGGTAAGAATCTGCGCACC 60.392 55.000 5.66 2.81 0.00 5.01
4322 8751 0.727398 GTGGGTAAGAATCTGCGCAC 59.273 55.000 5.66 15.26 37.56 5.34
4323 8752 0.613260 AGTGGGTAAGAATCTGCGCA 59.387 50.000 10.98 10.98 0.00 6.09
4324 8753 1.009829 CAGTGGGTAAGAATCTGCGC 58.990 55.000 0.00 0.00 0.00 6.09
4325 8754 1.656652 CCAGTGGGTAAGAATCTGCG 58.343 55.000 0.00 0.00 0.00 5.18
4326 8755 2.044123 CCCAGTGGGTAAGAATCTGC 57.956 55.000 21.24 0.00 38.25 4.26



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.