Multiple sequence alignment - TraesCS1D01G059100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G059100 chr1D 100.000 2585 0 0 1 2585 38919893 38917309 0.000000e+00 4774
1 TraesCS1D01G059100 chr1B 96.128 904 33 1 978 1879 59456217 59457120 0.000000e+00 1474
2 TraesCS1D01G059100 chr1B 94.453 667 27 6 1924 2585 59457124 59457785 0.000000e+00 1018
3 TraesCS1D01G059100 chr1B 96.703 91 3 0 1 91 72272274 72272184 4.460000e-33 152
4 TraesCS1D01G059100 chr1A 88.868 1051 62 21 714 1757 38718948 38717946 0.000000e+00 1242
5 TraesCS1D01G059100 chr5B 93.146 817 43 6 974 1788 486694961 486694156 0.000000e+00 1186
6 TraesCS1D01G059100 chr5B 91.566 83 7 0 1 83 14163571 14163489 5.850000e-22 115
7 TraesCS1D01G059100 chr3D 79.803 203 37 3 1510 1709 513938986 513939187 7.460000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G059100 chr1D 38917309 38919893 2584 True 4774 4774 100.0000 1 2585 1 chr1D.!!$R1 2584
1 TraesCS1D01G059100 chr1B 59456217 59457785 1568 False 1246 1474 95.2905 978 2585 2 chr1B.!!$F1 1607
2 TraesCS1D01G059100 chr1A 38717946 38718948 1002 True 1242 1242 88.8680 714 1757 1 chr1A.!!$R1 1043
3 TraesCS1D01G059100 chr5B 486694156 486694961 805 True 1186 1186 93.1460 974 1788 1 chr5B.!!$R2 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 933 0.039978 AAGTCAGACGCACACTCTCG 60.04 55.0 0.0 0.0 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 1905 1.002888 AGTCAGAATGCACCAGGTCAG 59.997 52.381 0.0 0.0 34.76 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.750778 CCATGTGTGGCTTATCAACCC 59.249 52.381 0.00 0.00 39.01 4.11
22 23 1.401552 CATGTGTGGCTTATCAACCCG 59.598 52.381 0.00 0.00 0.00 5.28
23 24 0.958382 TGTGTGGCTTATCAACCCGC 60.958 55.000 0.00 0.00 0.00 6.13
24 25 1.377987 TGTGGCTTATCAACCCGCC 60.378 57.895 0.00 0.00 42.78 6.13
26 27 4.329831 GGCTTATCAACCCGCCAA 57.670 55.556 0.00 0.00 42.06 4.52
27 28 2.573920 GGCTTATCAACCCGCCAAA 58.426 52.632 0.00 0.00 42.06 3.28
28 29 0.172578 GGCTTATCAACCCGCCAAAC 59.827 55.000 0.00 0.00 42.06 2.93
29 30 0.885196 GCTTATCAACCCGCCAAACA 59.115 50.000 0.00 0.00 0.00 2.83
30 31 1.476488 GCTTATCAACCCGCCAAACAT 59.524 47.619 0.00 0.00 0.00 2.71
31 32 2.479560 GCTTATCAACCCGCCAAACATC 60.480 50.000 0.00 0.00 0.00 3.06
32 33 1.374560 TATCAACCCGCCAAACATCG 58.625 50.000 0.00 0.00 0.00 3.84
33 34 0.322098 ATCAACCCGCCAAACATCGA 60.322 50.000 0.00 0.00 0.00 3.59
34 35 0.322098 TCAACCCGCCAAACATCGAT 60.322 50.000 0.00 0.00 0.00 3.59
35 36 0.525761 CAACCCGCCAAACATCGATT 59.474 50.000 0.00 0.00 0.00 3.34
36 37 0.525761 AACCCGCCAAACATCGATTG 59.474 50.000 0.00 0.00 0.00 2.67
37 38 0.608035 ACCCGCCAAACATCGATTGT 60.608 50.000 0.00 0.00 41.53 2.71
38 39 1.339247 ACCCGCCAAACATCGATTGTA 60.339 47.619 0.00 0.00 37.68 2.41
39 40 1.946768 CCCGCCAAACATCGATTGTAT 59.053 47.619 0.00 0.00 37.68 2.29
40 41 2.357637 CCCGCCAAACATCGATTGTATT 59.642 45.455 0.00 0.00 37.68 1.89
41 42 3.548014 CCCGCCAAACATCGATTGTATTC 60.548 47.826 0.00 0.00 37.68 1.75
42 43 3.548014 CCGCCAAACATCGATTGTATTCC 60.548 47.826 0.00 0.00 37.68 3.01
43 44 3.548014 CGCCAAACATCGATTGTATTCCC 60.548 47.826 0.00 0.00 37.68 3.97
44 45 3.380004 GCCAAACATCGATTGTATTCCCA 59.620 43.478 0.00 0.00 37.68 4.37
45 46 4.037923 GCCAAACATCGATTGTATTCCCAT 59.962 41.667 0.00 0.00 37.68 4.00
46 47 5.240623 GCCAAACATCGATTGTATTCCCATA 59.759 40.000 0.00 0.00 37.68 2.74
47 48 6.238897 GCCAAACATCGATTGTATTCCCATAA 60.239 38.462 0.00 0.00 37.68 1.90
48 49 7.683222 GCCAAACATCGATTGTATTCCCATAAA 60.683 37.037 0.00 0.00 37.68 1.40
49 50 7.647715 CCAAACATCGATTGTATTCCCATAAAC 59.352 37.037 0.00 0.00 37.68 2.01
50 51 7.873719 AACATCGATTGTATTCCCATAAACA 57.126 32.000 0.00 0.00 37.68 2.83
51 52 8.463930 AACATCGATTGTATTCCCATAAACAT 57.536 30.769 0.00 0.00 37.68 2.71
52 53 8.463930 ACATCGATTGTATTCCCATAAACATT 57.536 30.769 0.00 0.00 36.57 2.71
53 54 8.352201 ACATCGATTGTATTCCCATAAACATTG 58.648 33.333 0.00 0.00 36.57 2.82
54 55 7.873719 TCGATTGTATTCCCATAAACATTGT 57.126 32.000 0.00 0.00 0.00 2.71
55 56 7.925993 TCGATTGTATTCCCATAAACATTGTC 58.074 34.615 0.00 0.00 0.00 3.18
56 57 7.773224 TCGATTGTATTCCCATAAACATTGTCT 59.227 33.333 0.00 0.00 0.00 3.41
57 58 8.405531 CGATTGTATTCCCATAAACATTGTCTT 58.594 33.333 0.00 0.00 0.00 3.01
59 60 9.874205 ATTGTATTCCCATAAACATTGTCTTTG 57.126 29.630 0.00 0.00 0.00 2.77
60 61 8.642935 TGTATTCCCATAAACATTGTCTTTGA 57.357 30.769 0.00 0.00 0.00 2.69
61 62 9.083422 TGTATTCCCATAAACATTGTCTTTGAA 57.917 29.630 0.00 0.00 0.00 2.69
67 68 8.872845 CCCATAAACATTGTCTTTGAATAAAGC 58.127 33.333 0.00 0.00 42.40 3.51
68 69 9.421806 CCATAAACATTGTCTTTGAATAAAGCA 57.578 29.630 0.00 0.00 42.40 3.91
71 72 8.947055 AAACATTGTCTTTGAATAAAGCAAGT 57.053 26.923 0.00 0.00 42.40 3.16
72 73 7.935338 ACATTGTCTTTGAATAAAGCAAGTG 57.065 32.000 0.00 0.60 42.40 3.16
73 74 7.491682 ACATTGTCTTTGAATAAAGCAAGTGT 58.508 30.769 0.00 1.15 42.40 3.55
74 75 7.436080 ACATTGTCTTTGAATAAAGCAAGTGTG 59.564 33.333 0.00 0.00 42.40 3.82
75 76 6.449635 TGTCTTTGAATAAAGCAAGTGTGT 57.550 33.333 0.00 0.00 42.40 3.72
76 77 6.862209 TGTCTTTGAATAAAGCAAGTGTGTT 58.138 32.000 0.00 0.00 42.40 3.32
77 78 7.319646 TGTCTTTGAATAAAGCAAGTGTGTTT 58.680 30.769 0.00 0.00 42.40 2.83
78 79 8.462811 TGTCTTTGAATAAAGCAAGTGTGTTTA 58.537 29.630 0.00 0.00 42.40 2.01
79 80 8.958043 GTCTTTGAATAAAGCAAGTGTGTTTAG 58.042 33.333 0.00 0.00 42.40 1.85
80 81 8.898761 TCTTTGAATAAAGCAAGTGTGTTTAGA 58.101 29.630 0.00 0.00 42.40 2.10
81 82 9.683069 CTTTGAATAAAGCAAGTGTGTTTAGAT 57.317 29.630 0.00 0.00 37.12 1.98
113 114 9.883142 AAAATTAAACTTTCACCAAATCAGACA 57.117 25.926 0.00 0.00 0.00 3.41
114 115 9.883142 AAATTAAACTTTCACCAAATCAGACAA 57.117 25.926 0.00 0.00 0.00 3.18
115 116 9.533253 AATTAAACTTTCACCAAATCAGACAAG 57.467 29.630 0.00 0.00 0.00 3.16
116 117 6.530019 AAACTTTCACCAAATCAGACAAGT 57.470 33.333 0.00 0.00 0.00 3.16
117 118 7.639113 AAACTTTCACCAAATCAGACAAGTA 57.361 32.000 0.00 0.00 0.00 2.24
118 119 6.619801 ACTTTCACCAAATCAGACAAGTAC 57.380 37.500 0.00 0.00 0.00 2.73
119 120 5.236478 ACTTTCACCAAATCAGACAAGTACG 59.764 40.000 0.00 0.00 0.00 3.67
120 121 3.064207 TCACCAAATCAGACAAGTACGC 58.936 45.455 0.00 0.00 0.00 4.42
121 122 3.067106 CACCAAATCAGACAAGTACGCT 58.933 45.455 0.00 0.00 0.00 5.07
122 123 3.498397 CACCAAATCAGACAAGTACGCTT 59.502 43.478 0.00 0.00 34.82 4.68
123 124 4.688879 CACCAAATCAGACAAGTACGCTTA 59.311 41.667 0.00 0.00 32.87 3.09
124 125 4.929808 ACCAAATCAGACAAGTACGCTTAG 59.070 41.667 0.00 0.00 32.87 2.18
125 126 5.168569 CCAAATCAGACAAGTACGCTTAGA 58.831 41.667 0.00 0.00 32.87 2.10
126 127 5.062308 CCAAATCAGACAAGTACGCTTAGAC 59.938 44.000 0.00 0.00 32.87 2.59
127 128 3.844577 TCAGACAAGTACGCTTAGACC 57.155 47.619 0.00 0.00 32.87 3.85
128 129 3.418995 TCAGACAAGTACGCTTAGACCT 58.581 45.455 0.00 0.00 32.87 3.85
129 130 4.582869 TCAGACAAGTACGCTTAGACCTA 58.417 43.478 0.00 0.00 32.87 3.08
130 131 5.191426 TCAGACAAGTACGCTTAGACCTAT 58.809 41.667 0.00 0.00 32.87 2.57
131 132 5.296283 TCAGACAAGTACGCTTAGACCTATC 59.704 44.000 0.00 0.00 32.87 2.08
132 133 5.297278 CAGACAAGTACGCTTAGACCTATCT 59.703 44.000 0.00 0.00 39.15 1.98
133 134 6.482641 CAGACAAGTACGCTTAGACCTATCTA 59.517 42.308 0.00 0.00 36.29 1.98
134 135 6.707161 AGACAAGTACGCTTAGACCTATCTAG 59.293 42.308 0.00 0.00 38.69 2.43
135 136 6.355747 ACAAGTACGCTTAGACCTATCTAGT 58.644 40.000 0.00 0.00 38.69 2.57
136 137 7.504403 ACAAGTACGCTTAGACCTATCTAGTA 58.496 38.462 0.00 0.00 38.69 1.82
137 138 7.989741 ACAAGTACGCTTAGACCTATCTAGTAA 59.010 37.037 0.00 0.00 38.69 2.24
138 139 9.001542 CAAGTACGCTTAGACCTATCTAGTAAT 57.998 37.037 0.00 0.00 38.69 1.89
139 140 9.571816 AAGTACGCTTAGACCTATCTAGTAATT 57.428 33.333 0.00 0.00 38.69 1.40
140 141 9.001542 AGTACGCTTAGACCTATCTAGTAATTG 57.998 37.037 0.00 0.00 38.69 2.32
141 142 7.216973 ACGCTTAGACCTATCTAGTAATTGG 57.783 40.000 0.00 0.00 38.69 3.16
142 143 6.208994 ACGCTTAGACCTATCTAGTAATTGGG 59.791 42.308 0.00 0.00 38.69 4.12
143 144 6.399743 GCTTAGACCTATCTAGTAATTGGGC 58.600 44.000 0.00 0.00 38.69 5.36
144 145 6.014499 GCTTAGACCTATCTAGTAATTGGGCA 60.014 42.308 1.53 0.00 38.69 5.36
145 146 5.810080 AGACCTATCTAGTAATTGGGCAC 57.190 43.478 1.53 0.00 32.54 5.01
146 147 4.281182 AGACCTATCTAGTAATTGGGCACG 59.719 45.833 1.53 0.00 32.54 5.34
147 148 3.244112 ACCTATCTAGTAATTGGGCACGC 60.244 47.826 0.00 0.00 0.00 5.34
148 149 3.006967 CCTATCTAGTAATTGGGCACGCT 59.993 47.826 0.00 0.00 0.00 5.07
149 150 2.596904 TCTAGTAATTGGGCACGCTC 57.403 50.000 0.00 0.00 0.00 5.03
150 151 1.828595 TCTAGTAATTGGGCACGCTCA 59.171 47.619 0.00 0.00 0.00 4.26
151 152 2.434336 TCTAGTAATTGGGCACGCTCAT 59.566 45.455 0.00 0.00 0.00 2.90
152 153 1.668419 AGTAATTGGGCACGCTCATC 58.332 50.000 0.00 0.00 0.00 2.92
153 154 1.210478 AGTAATTGGGCACGCTCATCT 59.790 47.619 0.00 0.00 0.00 2.90
154 155 2.434336 AGTAATTGGGCACGCTCATCTA 59.566 45.455 0.00 0.00 0.00 1.98
155 156 2.645838 AATTGGGCACGCTCATCTAT 57.354 45.000 0.00 0.00 0.00 1.98
156 157 1.888215 ATTGGGCACGCTCATCTATG 58.112 50.000 0.00 0.00 0.00 2.23
157 158 0.541392 TTGGGCACGCTCATCTATGT 59.459 50.000 0.00 0.00 0.00 2.29
158 159 0.541392 TGGGCACGCTCATCTATGTT 59.459 50.000 0.00 0.00 0.00 2.71
159 160 0.940126 GGGCACGCTCATCTATGTTG 59.060 55.000 0.00 0.00 0.00 3.33
160 161 1.656652 GGCACGCTCATCTATGTTGT 58.343 50.000 0.00 0.00 0.00 3.32
161 162 2.483013 GGGCACGCTCATCTATGTTGTA 60.483 50.000 0.00 0.00 0.00 2.41
162 163 2.540101 GGCACGCTCATCTATGTTGTAC 59.460 50.000 0.00 0.00 0.00 2.90
163 164 2.216488 GCACGCTCATCTATGTTGTACG 59.784 50.000 0.00 0.00 0.00 3.67
164 165 2.216488 CACGCTCATCTATGTTGTACGC 59.784 50.000 0.00 0.00 0.00 4.42
165 166 2.159296 ACGCTCATCTATGTTGTACGCA 60.159 45.455 0.00 0.00 0.00 5.24
166 167 3.052745 CGCTCATCTATGTTGTACGCAT 58.947 45.455 7.69 7.69 0.00 4.73
167 168 4.226761 CGCTCATCTATGTTGTACGCATA 58.773 43.478 8.88 8.88 0.00 3.14
168 169 4.322009 CGCTCATCTATGTTGTACGCATAG 59.678 45.833 21.64 21.64 44.19 2.23
169 170 4.090642 GCTCATCTATGTTGTACGCATAGC 59.909 45.833 22.33 14.61 43.15 2.97
170 171 5.453567 TCATCTATGTTGTACGCATAGCT 57.546 39.130 22.33 15.25 43.15 3.32
171 172 5.842907 TCATCTATGTTGTACGCATAGCTT 58.157 37.500 22.33 14.27 43.15 3.74
172 173 6.280643 TCATCTATGTTGTACGCATAGCTTT 58.719 36.000 22.33 12.66 43.15 3.51
173 174 6.420903 TCATCTATGTTGTACGCATAGCTTTC 59.579 38.462 22.33 0.00 43.15 2.62
174 175 5.656480 TCTATGTTGTACGCATAGCTTTCA 58.344 37.500 22.33 10.00 43.15 2.69
175 176 6.280643 TCTATGTTGTACGCATAGCTTTCAT 58.719 36.000 22.33 5.44 43.15 2.57
176 177 4.598406 TGTTGTACGCATAGCTTTCATG 57.402 40.909 0.00 0.00 0.00 3.07
177 178 4.000325 TGTTGTACGCATAGCTTTCATGT 59.000 39.130 0.00 0.00 0.00 3.21
178 179 4.092821 TGTTGTACGCATAGCTTTCATGTC 59.907 41.667 0.00 0.00 0.00 3.06
179 180 3.194861 TGTACGCATAGCTTTCATGTCC 58.805 45.455 0.00 0.00 0.00 4.02
180 181 2.698855 ACGCATAGCTTTCATGTCCT 57.301 45.000 0.00 0.00 0.00 3.85
181 182 3.819564 ACGCATAGCTTTCATGTCCTA 57.180 42.857 0.00 0.00 0.00 2.94
182 183 3.722147 ACGCATAGCTTTCATGTCCTAG 58.278 45.455 0.00 0.00 0.00 3.02
183 184 3.133003 ACGCATAGCTTTCATGTCCTAGT 59.867 43.478 0.00 0.00 0.00 2.57
184 185 4.122776 CGCATAGCTTTCATGTCCTAGTT 58.877 43.478 0.00 0.00 0.00 2.24
185 186 4.572389 CGCATAGCTTTCATGTCCTAGTTT 59.428 41.667 0.00 0.00 0.00 2.66
186 187 5.065218 CGCATAGCTTTCATGTCCTAGTTTT 59.935 40.000 0.00 0.00 0.00 2.43
187 188 6.261118 GCATAGCTTTCATGTCCTAGTTTTG 58.739 40.000 0.00 0.00 0.00 2.44
188 189 6.678900 GCATAGCTTTCATGTCCTAGTTTTGG 60.679 42.308 0.00 0.00 0.00 3.28
189 190 4.985538 AGCTTTCATGTCCTAGTTTTGGA 58.014 39.130 0.00 0.00 0.00 3.53
190 191 5.385198 AGCTTTCATGTCCTAGTTTTGGAA 58.615 37.500 0.00 0.00 35.10 3.53
191 192 5.241728 AGCTTTCATGTCCTAGTTTTGGAAC 59.758 40.000 0.00 0.00 35.10 3.62
192 193 5.564848 GCTTTCATGTCCTAGTTTTGGAACC 60.565 44.000 0.00 0.00 36.39 3.62
193 194 4.993705 TCATGTCCTAGTTTTGGAACCT 57.006 40.909 0.00 0.00 36.39 3.50
194 195 5.319043 TCATGTCCTAGTTTTGGAACCTT 57.681 39.130 0.00 0.00 36.39 3.50
195 196 5.313712 TCATGTCCTAGTTTTGGAACCTTC 58.686 41.667 0.00 0.00 36.39 3.46
196 197 5.073144 TCATGTCCTAGTTTTGGAACCTTCT 59.927 40.000 0.00 0.00 36.39 2.85
197 198 6.271391 TCATGTCCTAGTTTTGGAACCTTCTA 59.729 38.462 0.00 0.00 36.39 2.10
198 199 5.861727 TGTCCTAGTTTTGGAACCTTCTAC 58.138 41.667 0.00 0.00 36.39 2.59
199 200 5.367352 TGTCCTAGTTTTGGAACCTTCTACA 59.633 40.000 0.00 0.00 36.39 2.74
200 201 6.126710 TGTCCTAGTTTTGGAACCTTCTACAA 60.127 38.462 0.00 0.00 36.39 2.41
201 202 6.427242 GTCCTAGTTTTGGAACCTTCTACAAG 59.573 42.308 0.00 0.00 36.39 3.16
213 214 5.786401 CCTTCTACAAGGTTTCTGAATCG 57.214 43.478 0.00 0.00 44.11 3.34
214 215 4.631813 CCTTCTACAAGGTTTCTGAATCGG 59.368 45.833 0.00 0.00 44.11 4.18
215 216 4.884668 TCTACAAGGTTTCTGAATCGGT 57.115 40.909 0.00 0.00 0.00 4.69
216 217 5.223449 TCTACAAGGTTTCTGAATCGGTT 57.777 39.130 0.00 0.00 0.00 4.44
217 218 5.617252 TCTACAAGGTTTCTGAATCGGTTT 58.383 37.500 0.00 0.00 0.00 3.27
218 219 6.059484 TCTACAAGGTTTCTGAATCGGTTTT 58.941 36.000 0.00 0.00 0.00 2.43
219 220 5.592104 ACAAGGTTTCTGAATCGGTTTTT 57.408 34.783 0.00 0.00 0.00 1.94
220 221 5.588240 ACAAGGTTTCTGAATCGGTTTTTC 58.412 37.500 0.00 0.00 0.00 2.29
221 222 5.359860 ACAAGGTTTCTGAATCGGTTTTTCT 59.640 36.000 0.00 0.00 0.00 2.52
222 223 5.438761 AGGTTTCTGAATCGGTTTTTCTG 57.561 39.130 0.00 0.00 0.00 3.02
223 224 4.887655 AGGTTTCTGAATCGGTTTTTCTGT 59.112 37.500 0.00 0.00 0.00 3.41
224 225 5.359860 AGGTTTCTGAATCGGTTTTTCTGTT 59.640 36.000 0.00 0.00 0.00 3.16
225 226 6.040247 GGTTTCTGAATCGGTTTTTCTGTTT 58.960 36.000 0.00 0.00 0.00 2.83
226 227 6.198403 GGTTTCTGAATCGGTTTTTCTGTTTC 59.802 38.462 0.00 0.00 33.87 2.78
227 228 6.693315 TTCTGAATCGGTTTTTCTGTTTCT 57.307 33.333 0.00 0.00 34.19 2.52
228 229 6.693315 TCTGAATCGGTTTTTCTGTTTCTT 57.307 33.333 0.00 0.00 34.19 2.52
229 230 7.095695 TCTGAATCGGTTTTTCTGTTTCTTT 57.904 32.000 0.00 0.00 34.19 2.52
230 231 7.543756 TCTGAATCGGTTTTTCTGTTTCTTTT 58.456 30.769 0.00 0.00 34.19 2.27
231 232 8.679100 TCTGAATCGGTTTTTCTGTTTCTTTTA 58.321 29.630 0.00 0.00 34.19 1.52
232 233 8.623310 TGAATCGGTTTTTCTGTTTCTTTTAC 57.377 30.769 0.00 0.00 34.19 2.01
233 234 8.244802 TGAATCGGTTTTTCTGTTTCTTTTACA 58.755 29.630 0.00 0.00 34.19 2.41
234 235 8.628882 AATCGGTTTTTCTGTTTCTTTTACAG 57.371 30.769 0.00 0.00 43.41 2.74
235 236 7.148355 TCGGTTTTTCTGTTTCTTTTACAGT 57.852 32.000 0.00 0.00 42.77 3.55
236 237 7.595604 TCGGTTTTTCTGTTTCTTTTACAGTT 58.404 30.769 0.00 0.00 42.77 3.16
237 238 8.083462 TCGGTTTTTCTGTTTCTTTTACAGTTT 58.917 29.630 0.00 0.00 42.77 2.66
238 239 8.705134 CGGTTTTTCTGTTTCTTTTACAGTTTT 58.295 29.630 0.00 0.00 42.77 2.43
402 403 9.541143 AATTTGGAACTTCATATTTTTGTTCGT 57.459 25.926 0.00 0.00 38.20 3.85
403 404 7.922505 TTGGAACTTCATATTTTTGTTCGTG 57.077 32.000 0.00 0.00 38.20 4.35
404 405 7.033530 TGGAACTTCATATTTTTGTTCGTGT 57.966 32.000 0.00 0.00 38.20 4.49
405 406 7.484975 TGGAACTTCATATTTTTGTTCGTGTT 58.515 30.769 0.00 0.00 38.20 3.32
406 407 7.976734 TGGAACTTCATATTTTTGTTCGTGTTT 59.023 29.630 0.00 0.00 38.20 2.83
407 408 8.813282 GGAACTTCATATTTTTGTTCGTGTTTT 58.187 29.630 0.00 0.00 38.20 2.43
408 409 9.829637 GAACTTCATATTTTTGTTCGTGTTTTC 57.170 29.630 0.00 0.00 0.00 2.29
409 410 8.918961 ACTTCATATTTTTGTTCGTGTTTTCA 57.081 26.923 0.00 0.00 0.00 2.69
410 411 9.360093 ACTTCATATTTTTGTTCGTGTTTTCAA 57.640 25.926 0.00 0.00 0.00 2.69
422 423 9.574458 TGTTCGTGTTTTCAATAAATTTCTTGA 57.426 25.926 13.33 13.33 0.00 3.02
489 490 8.728337 TGATTGGAATTTCAAATTTGTGTTCA 57.272 26.923 17.47 0.00 0.00 3.18
490 491 8.828644 TGATTGGAATTTCAAATTTGTGTTCAG 58.171 29.630 17.47 0.00 0.00 3.02
491 492 7.551035 TTGGAATTTCAAATTTGTGTTCAGG 57.449 32.000 17.47 0.00 0.00 3.86
492 493 6.882656 TGGAATTTCAAATTTGTGTTCAGGA 58.117 32.000 17.47 6.37 0.00 3.86
493 494 7.507829 TGGAATTTCAAATTTGTGTTCAGGAT 58.492 30.769 17.47 0.31 0.00 3.24
494 495 7.992033 TGGAATTTCAAATTTGTGTTCAGGATT 59.008 29.630 17.47 7.60 0.00 3.01
495 496 8.839343 GGAATTTCAAATTTGTGTTCAGGATTT 58.161 29.630 17.47 0.09 0.00 2.17
649 650 9.884465 AAAATGTTCGTGTTTTCAAAAATTTGA 57.116 22.222 4.52 4.52 44.78 2.69
664 665 9.884465 TCAAAAATTTGAAAATGTTCACGTTTT 57.116 22.222 9.20 9.20 43.52 2.43
674 675 7.718213 AAATGTTCACGTTTTCAAAAATTGC 57.282 28.000 0.00 0.00 31.52 3.56
675 676 6.660887 ATGTTCACGTTTTCAAAAATTGCT 57.339 29.167 0.00 0.00 0.00 3.91
676 677 5.852005 TGTTCACGTTTTCAAAAATTGCTG 58.148 33.333 0.00 0.00 0.00 4.41
677 678 5.163913 TGTTCACGTTTTCAAAAATTGCTGG 60.164 36.000 0.00 0.00 0.00 4.85
678 679 4.748892 TCACGTTTTCAAAAATTGCTGGA 58.251 34.783 0.00 0.00 0.00 3.86
679 680 4.803088 TCACGTTTTCAAAAATTGCTGGAG 59.197 37.500 0.00 0.00 0.00 3.86
680 681 4.566360 CACGTTTTCAAAAATTGCTGGAGT 59.434 37.500 0.00 0.00 0.00 3.85
681 682 5.063312 CACGTTTTCAAAAATTGCTGGAGTT 59.937 36.000 0.00 0.00 0.00 3.01
682 683 5.641636 ACGTTTTCAAAAATTGCTGGAGTTT 59.358 32.000 0.00 0.00 0.00 2.66
683 684 6.148645 ACGTTTTCAAAAATTGCTGGAGTTTT 59.851 30.769 0.00 0.00 0.00 2.43
684 685 7.332182 ACGTTTTCAAAAATTGCTGGAGTTTTA 59.668 29.630 3.06 0.00 0.00 1.52
685 686 8.171840 CGTTTTCAAAAATTGCTGGAGTTTTAA 58.828 29.630 3.06 0.00 0.00 1.52
686 687 9.833182 GTTTTCAAAAATTGCTGGAGTTTTAAA 57.167 25.926 3.06 0.00 0.00 1.52
717 718 8.874482 GTTTAATAAAAACAAAAATTGGTCGCG 58.126 29.630 0.00 0.00 34.12 5.87
726 727 5.064071 ACAAAAATTGGTCGCGTTTCAAAAT 59.936 32.000 5.77 1.03 34.12 1.82
728 729 7.042389 ACAAAAATTGGTCGCGTTTCAAAATAT 60.042 29.630 5.77 0.00 34.12 1.28
757 760 9.549078 TTTGCTTTTTCCCTTAAAAATATTCGT 57.451 25.926 0.00 0.00 44.10 3.85
758 761 9.549078 TTGCTTTTTCCCTTAAAAATATTCGTT 57.451 25.926 0.00 0.00 44.10 3.85
780 783 8.505625 TCGTTAAATAAAAACAAATCTACCGCT 58.494 29.630 0.00 0.00 0.00 5.52
785 788 8.556213 AATAAAAACAAATCTACCGCTACAGA 57.444 30.769 0.00 0.00 0.00 3.41
791 794 4.530710 AATCTACCGCTACAGAAACACA 57.469 40.909 0.00 0.00 0.00 3.72
800 803 1.871080 ACAGAAACACAAGAGCTCCG 58.129 50.000 10.93 4.45 0.00 4.63
801 804 1.151668 CAGAAACACAAGAGCTCCGG 58.848 55.000 10.93 5.29 0.00 5.14
803 806 1.625818 AGAAACACAAGAGCTCCGGAT 59.374 47.619 10.93 0.00 0.00 4.18
804 807 2.003301 GAAACACAAGAGCTCCGGATC 58.997 52.381 10.93 0.00 0.00 3.36
811 814 1.169661 AGAGCTCCGGATCGCTACAG 61.170 60.000 17.46 0.00 36.45 2.74
812 815 1.448922 GAGCTCCGGATCGCTACAGT 61.449 60.000 17.46 0.00 36.45 3.55
813 816 1.038130 AGCTCCGGATCGCTACAGTT 61.038 55.000 16.09 0.00 34.11 3.16
814 817 0.666913 GCTCCGGATCGCTACAGTTA 59.333 55.000 3.57 0.00 0.00 2.24
815 818 1.066605 GCTCCGGATCGCTACAGTTAA 59.933 52.381 3.57 0.00 0.00 2.01
816 819 2.288273 GCTCCGGATCGCTACAGTTAAT 60.288 50.000 3.57 0.00 0.00 1.40
817 820 3.799232 GCTCCGGATCGCTACAGTTAATT 60.799 47.826 3.57 0.00 0.00 1.40
818 821 4.369182 CTCCGGATCGCTACAGTTAATTT 58.631 43.478 3.57 0.00 0.00 1.82
819 822 4.116961 TCCGGATCGCTACAGTTAATTTG 58.883 43.478 0.00 0.00 0.00 2.32
823 826 4.318121 GGATCGCTACAGTTAATTTGCTCG 60.318 45.833 0.00 0.00 0.00 5.03
826 829 4.503007 TCGCTACAGTTAATTTGCTCGATC 59.497 41.667 0.00 0.00 0.00 3.69
837 846 1.477105 TGCTCGATCGCTACAAATCG 58.523 50.000 11.09 0.00 44.66 3.34
845 854 3.159353 TCGCTACAAATCGCACAGTAT 57.841 42.857 0.00 0.00 0.00 2.12
876 885 2.435586 CTGGAAGCCCTCTGTGCG 60.436 66.667 0.00 0.00 0.00 5.34
898 907 2.590007 GCACATAGCAGCTCCCCG 60.590 66.667 0.00 0.00 44.79 5.73
917 926 1.618640 GAGCCGAAAGTCAGACGCAC 61.619 60.000 0.00 0.00 0.00 5.34
918 927 1.954146 GCCGAAAGTCAGACGCACA 60.954 57.895 0.00 0.00 0.00 4.57
919 928 1.853319 CCGAAAGTCAGACGCACAC 59.147 57.895 0.00 0.00 0.00 3.82
920 929 0.597637 CCGAAAGTCAGACGCACACT 60.598 55.000 0.00 0.00 0.00 3.55
921 930 0.778815 CGAAAGTCAGACGCACACTC 59.221 55.000 0.00 0.00 0.00 3.51
922 931 1.600663 CGAAAGTCAGACGCACACTCT 60.601 52.381 0.00 0.00 0.00 3.24
923 932 2.055100 GAAAGTCAGACGCACACTCTC 58.945 52.381 0.00 0.00 0.00 3.20
924 933 0.039978 AAGTCAGACGCACACTCTCG 60.040 55.000 0.00 0.00 0.00 4.04
925 934 2.083522 GTCAGACGCACACTCTCGC 61.084 63.158 0.00 0.00 0.00 5.03
926 935 2.050077 CAGACGCACACTCTCGCA 60.050 61.111 0.00 0.00 0.00 5.10
927 936 1.445066 CAGACGCACACTCTCGCAT 60.445 57.895 0.00 0.00 0.00 4.73
1592 1601 2.060383 CGGAGCAGTGATCCCTCCA 61.060 63.158 21.49 0.00 44.24 3.86
1727 1740 5.374071 TGCATTGCTCTGATGTATCATCTT 58.626 37.500 10.49 0.00 36.02 2.40
1783 1796 3.921119 TGTTCAACTGCCATTGATCAC 57.079 42.857 0.00 2.37 38.37 3.06
1797 1810 5.006455 CCATTGATCACGATTCAGACTTGAG 59.994 44.000 0.00 0.00 34.15 3.02
1799 1812 5.139435 TGATCACGATTCAGACTTGAGTT 57.861 39.130 0.00 0.00 34.15 3.01
1820 1833 4.775058 TTGCACCAGCGTTGTATTATTT 57.225 36.364 0.00 0.00 46.23 1.40
1827 1840 6.959311 CACCAGCGTTGTATTATTTAACAGTC 59.041 38.462 0.00 0.00 0.00 3.51
1844 1857 3.678072 ACAGTCCGTATGTTTCGATTGTG 59.322 43.478 0.00 0.00 0.00 3.33
1871 1886 3.441222 TGCACTAGTGATTTGCAAGGATG 59.559 43.478 27.08 0.00 43.16 3.51
1895 1910 7.424803 TGCATTGCATATTTTGTATACTGACC 58.575 34.615 7.38 0.00 31.71 4.02
1896 1911 7.285172 TGCATTGCATATTTTGTATACTGACCT 59.715 33.333 7.38 0.00 31.71 3.85
1897 1912 7.592533 GCATTGCATATTTTGTATACTGACCTG 59.407 37.037 3.15 0.00 0.00 4.00
1898 1913 7.566760 TTGCATATTTTGTATACTGACCTGG 57.433 36.000 4.17 0.00 0.00 4.45
1899 1914 6.658849 TGCATATTTTGTATACTGACCTGGT 58.341 36.000 0.00 0.00 0.00 4.00
1900 1915 6.542005 TGCATATTTTGTATACTGACCTGGTG 59.458 38.462 2.82 0.00 0.00 4.17
1901 1916 6.513393 GCATATTTTGTATACTGACCTGGTGC 60.513 42.308 2.82 0.00 0.00 5.01
1902 1917 4.359434 TTTTGTATACTGACCTGGTGCA 57.641 40.909 2.82 1.18 0.00 4.57
1903 1918 4.568072 TTTGTATACTGACCTGGTGCAT 57.432 40.909 2.82 0.00 0.00 3.96
1904 1919 4.568072 TTGTATACTGACCTGGTGCATT 57.432 40.909 2.82 0.00 0.00 3.56
1905 1920 4.137116 TGTATACTGACCTGGTGCATTC 57.863 45.455 2.82 0.00 0.00 2.67
1906 1921 3.774766 TGTATACTGACCTGGTGCATTCT 59.225 43.478 2.82 0.00 0.00 2.40
1907 1922 2.768253 TACTGACCTGGTGCATTCTG 57.232 50.000 2.82 0.00 0.00 3.02
1908 1923 1.059098 ACTGACCTGGTGCATTCTGA 58.941 50.000 2.82 0.00 0.00 3.27
1909 1924 1.271054 ACTGACCTGGTGCATTCTGAC 60.271 52.381 2.82 0.00 0.00 3.51
1910 1925 1.002888 CTGACCTGGTGCATTCTGACT 59.997 52.381 2.82 0.00 0.00 3.41
1911 1926 1.421268 TGACCTGGTGCATTCTGACTT 59.579 47.619 2.82 0.00 0.00 3.01
1912 1927 2.158623 TGACCTGGTGCATTCTGACTTT 60.159 45.455 2.82 0.00 0.00 2.66
1913 1928 2.227388 GACCTGGTGCATTCTGACTTTG 59.773 50.000 2.82 0.00 0.00 2.77
1914 1929 1.542915 CCTGGTGCATTCTGACTTTGG 59.457 52.381 0.00 0.00 0.00 3.28
1915 1930 2.507484 CTGGTGCATTCTGACTTTGGA 58.493 47.619 0.00 0.00 0.00 3.53
1916 1931 3.087031 CTGGTGCATTCTGACTTTGGAT 58.913 45.455 0.00 0.00 0.00 3.41
1917 1932 4.264253 CTGGTGCATTCTGACTTTGGATA 58.736 43.478 0.00 0.00 0.00 2.59
1918 1933 4.264253 TGGTGCATTCTGACTTTGGATAG 58.736 43.478 0.00 0.00 0.00 2.08
1919 1934 3.629398 GGTGCATTCTGACTTTGGATAGG 59.371 47.826 0.00 0.00 0.00 2.57
1920 1935 3.629398 GTGCATTCTGACTTTGGATAGGG 59.371 47.826 0.00 0.00 0.00 3.53
1921 1936 3.523157 TGCATTCTGACTTTGGATAGGGA 59.477 43.478 0.00 0.00 0.00 4.20
1922 1937 4.018506 TGCATTCTGACTTTGGATAGGGAA 60.019 41.667 0.00 0.00 0.00 3.97
1926 1941 6.642733 TTCTGACTTTGGATAGGGAAGAAT 57.357 37.500 0.00 0.00 0.00 2.40
1932 1947 6.735556 ACTTTGGATAGGGAAGAATTGTGAT 58.264 36.000 0.00 0.00 0.00 3.06
1934 1949 5.715439 TGGATAGGGAAGAATTGTGATGT 57.285 39.130 0.00 0.00 0.00 3.06
1961 1976 6.105397 ACTGGCATTGATGATTCAAACTTT 57.895 33.333 0.00 0.00 44.70 2.66
1962 1977 7.230849 ACTGGCATTGATGATTCAAACTTTA 57.769 32.000 0.00 0.00 44.70 1.85
1991 2006 5.820423 TCGCACCAGCATTGTATTACTAAAT 59.180 36.000 0.00 0.00 42.27 1.40
2046 2061 3.777465 TTATACTGAGCTGTCGACACC 57.223 47.619 15.76 8.71 0.00 4.16
2057 2072 1.153127 TCGACACCGCCAAAGGTTT 60.153 52.632 0.00 0.00 43.00 3.27
2126 2141 3.202906 TCGGTAGGTTTATGCTGCAATC 58.797 45.455 6.36 0.00 0.00 2.67
2185 2203 2.793790 CGCATTGCTCTGATGTCTCTAC 59.206 50.000 7.12 0.00 0.00 2.59
2218 2236 2.953466 TACAAGGCCGCTTAGTAGTG 57.047 50.000 0.00 0.00 0.00 2.74
2225 2243 2.752144 CCGCTTAGTAGTGGTAGACG 57.248 55.000 0.00 0.00 45.29 4.18
2270 2290 3.057736 CCTGTTGGTGAGCATTCTTTCTG 60.058 47.826 0.00 0.00 0.00 3.02
2305 2325 5.106987 GGAACAAATGTGATGTTGAATTGCC 60.107 40.000 0.00 0.00 40.90 4.52
2370 2390 5.412286 GCATTTTATTTCAGGTGCAATTGGT 59.588 36.000 7.72 0.00 33.09 3.67
2529 2549 1.888215 AGTGCTGAATCACTGGTGTG 58.112 50.000 0.53 0.00 44.88 3.82
2539 2559 3.552132 TCACTGGTGTGCTAGACAAAA 57.448 42.857 0.00 0.00 43.49 2.44
2544 2564 5.700832 CACTGGTGTGCTAGACAAAATTAGA 59.299 40.000 0.00 0.00 35.91 2.10
2555 2575 9.980780 GCTAGACAAAATTAGAAAGAAGCTTAG 57.019 33.333 0.00 0.00 0.00 2.18
2576 2596 7.572724 GCTTAGGATGATGATGTATGTTCTTGC 60.573 40.741 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.885196 TGTTTGGCGGGTTGATAAGC 59.115 50.000 0.00 0.00 0.00 3.09
11 12 2.223249 CGATGTTTGGCGGGTTGATAAG 60.223 50.000 0.00 0.00 0.00 1.73
12 13 1.740585 CGATGTTTGGCGGGTTGATAA 59.259 47.619 0.00 0.00 0.00 1.75
13 14 1.066071 TCGATGTTTGGCGGGTTGATA 60.066 47.619 0.00 0.00 0.00 2.15
14 15 0.322098 TCGATGTTTGGCGGGTTGAT 60.322 50.000 0.00 0.00 0.00 2.57
15 16 0.322098 ATCGATGTTTGGCGGGTTGA 60.322 50.000 0.00 0.00 0.00 3.18
16 17 0.525761 AATCGATGTTTGGCGGGTTG 59.474 50.000 0.00 0.00 0.00 3.77
17 18 0.525761 CAATCGATGTTTGGCGGGTT 59.474 50.000 0.00 0.00 0.00 4.11
18 19 0.608035 ACAATCGATGTTTGGCGGGT 60.608 50.000 0.00 0.00 40.06 5.28
19 20 1.374560 TACAATCGATGTTTGGCGGG 58.625 50.000 0.00 0.00 43.63 6.13
20 21 3.548014 GGAATACAATCGATGTTTGGCGG 60.548 47.826 0.00 0.00 43.63 6.13
21 22 3.548014 GGGAATACAATCGATGTTTGGCG 60.548 47.826 0.00 0.00 43.63 5.69
22 23 3.380004 TGGGAATACAATCGATGTTTGGC 59.620 43.478 0.00 0.00 43.63 4.52
23 24 5.772825 ATGGGAATACAATCGATGTTTGG 57.227 39.130 0.00 0.00 43.63 3.28
24 25 8.187480 TGTTTATGGGAATACAATCGATGTTTG 58.813 33.333 0.00 0.00 43.63 2.93
25 26 8.287439 TGTTTATGGGAATACAATCGATGTTT 57.713 30.769 0.00 0.00 43.63 2.83
26 27 7.873719 TGTTTATGGGAATACAATCGATGTT 57.126 32.000 0.00 0.00 43.63 2.71
27 28 8.352201 CAATGTTTATGGGAATACAATCGATGT 58.648 33.333 0.00 2.07 46.36 3.06
28 29 8.352201 ACAATGTTTATGGGAATACAATCGATG 58.648 33.333 0.00 0.00 0.00 3.84
29 30 8.463930 ACAATGTTTATGGGAATACAATCGAT 57.536 30.769 0.00 0.00 0.00 3.59
30 31 7.773224 AGACAATGTTTATGGGAATACAATCGA 59.227 33.333 0.00 0.00 0.00 3.59
31 32 7.930217 AGACAATGTTTATGGGAATACAATCG 58.070 34.615 0.00 0.00 0.00 3.34
33 34 9.874205 CAAAGACAATGTTTATGGGAATACAAT 57.126 29.630 0.00 0.00 0.00 2.71
34 35 9.083422 TCAAAGACAATGTTTATGGGAATACAA 57.917 29.630 0.00 0.00 0.00 2.41
35 36 8.642935 TCAAAGACAATGTTTATGGGAATACA 57.357 30.769 0.00 0.00 0.00 2.29
41 42 8.872845 GCTTTATTCAAAGACAATGTTTATGGG 58.127 33.333 1.40 0.00 43.32 4.00
42 43 9.421806 TGCTTTATTCAAAGACAATGTTTATGG 57.578 29.630 1.40 0.00 43.32 2.74
46 47 8.819974 CACTTGCTTTATTCAAAGACAATGTTT 58.180 29.630 1.40 0.00 43.32 2.83
47 48 7.981225 ACACTTGCTTTATTCAAAGACAATGTT 59.019 29.630 1.40 0.00 43.32 2.71
48 49 7.436080 CACACTTGCTTTATTCAAAGACAATGT 59.564 33.333 1.40 0.00 43.32 2.71
49 50 7.436080 ACACACTTGCTTTATTCAAAGACAATG 59.564 33.333 1.40 7.62 43.32 2.82
50 51 7.491682 ACACACTTGCTTTATTCAAAGACAAT 58.508 30.769 1.40 0.00 43.32 2.71
51 52 6.862209 ACACACTTGCTTTATTCAAAGACAA 58.138 32.000 1.40 4.68 43.32 3.18
52 53 6.449635 ACACACTTGCTTTATTCAAAGACA 57.550 33.333 1.40 0.00 43.32 3.41
53 54 7.755582 AAACACACTTGCTTTATTCAAAGAC 57.244 32.000 1.40 0.00 43.32 3.01
54 55 8.898761 TCTAAACACACTTGCTTTATTCAAAGA 58.101 29.630 1.40 0.00 43.32 2.52
55 56 9.683069 ATCTAAACACACTTGCTTTATTCAAAG 57.317 29.630 0.00 0.00 43.46 2.77
87 88 9.883142 TGTCTGATTTGGTGAAAGTTTAATTTT 57.117 25.926 0.00 0.00 0.00 1.82
88 89 9.883142 TTGTCTGATTTGGTGAAAGTTTAATTT 57.117 25.926 0.00 0.00 0.00 1.82
89 90 9.533253 CTTGTCTGATTTGGTGAAAGTTTAATT 57.467 29.630 0.00 0.00 0.00 1.40
90 91 8.695456 ACTTGTCTGATTTGGTGAAAGTTTAAT 58.305 29.630 0.00 0.00 0.00 1.40
91 92 8.062065 ACTTGTCTGATTTGGTGAAAGTTTAA 57.938 30.769 0.00 0.00 0.00 1.52
92 93 7.639113 ACTTGTCTGATTTGGTGAAAGTTTA 57.361 32.000 0.00 0.00 0.00 2.01
93 94 6.530019 ACTTGTCTGATTTGGTGAAAGTTT 57.470 33.333 0.00 0.00 0.00 2.66
94 95 6.238374 CGTACTTGTCTGATTTGGTGAAAGTT 60.238 38.462 0.00 0.00 0.00 2.66
95 96 5.236478 CGTACTTGTCTGATTTGGTGAAAGT 59.764 40.000 0.00 0.00 0.00 2.66
96 97 5.679906 CGTACTTGTCTGATTTGGTGAAAG 58.320 41.667 0.00 0.00 0.00 2.62
97 98 4.024387 GCGTACTTGTCTGATTTGGTGAAA 60.024 41.667 0.00 0.00 0.00 2.69
98 99 3.496884 GCGTACTTGTCTGATTTGGTGAA 59.503 43.478 0.00 0.00 0.00 3.18
99 100 3.064207 GCGTACTTGTCTGATTTGGTGA 58.936 45.455 0.00 0.00 0.00 4.02
100 101 3.067106 AGCGTACTTGTCTGATTTGGTG 58.933 45.455 0.00 0.00 0.00 4.17
101 102 3.402628 AGCGTACTTGTCTGATTTGGT 57.597 42.857 0.00 0.00 0.00 3.67
102 103 5.062308 GTCTAAGCGTACTTGTCTGATTTGG 59.938 44.000 0.00 0.00 36.57 3.28
103 104 5.062308 GGTCTAAGCGTACTTGTCTGATTTG 59.938 44.000 0.00 0.00 36.57 2.32
104 105 5.047235 AGGTCTAAGCGTACTTGTCTGATTT 60.047 40.000 0.00 0.00 36.57 2.17
105 106 4.463186 AGGTCTAAGCGTACTTGTCTGATT 59.537 41.667 0.00 0.00 36.57 2.57
106 107 4.017808 AGGTCTAAGCGTACTTGTCTGAT 58.982 43.478 0.00 0.00 36.57 2.90
107 108 3.418995 AGGTCTAAGCGTACTTGTCTGA 58.581 45.455 0.00 0.00 36.57 3.27
108 109 3.851976 AGGTCTAAGCGTACTTGTCTG 57.148 47.619 0.00 0.00 36.57 3.51
109 110 5.438833 AGATAGGTCTAAGCGTACTTGTCT 58.561 41.667 0.00 0.00 36.57 3.41
110 111 5.754543 AGATAGGTCTAAGCGTACTTGTC 57.245 43.478 0.00 0.00 36.57 3.18
111 112 6.355747 ACTAGATAGGTCTAAGCGTACTTGT 58.644 40.000 0.00 0.00 36.54 3.16
112 113 6.864360 ACTAGATAGGTCTAAGCGTACTTG 57.136 41.667 0.00 0.00 36.54 3.16
113 114 9.571816 AATTACTAGATAGGTCTAAGCGTACTT 57.428 33.333 0.00 0.00 36.54 2.24
114 115 9.001542 CAATTACTAGATAGGTCTAAGCGTACT 57.998 37.037 0.00 0.00 36.54 2.73
115 116 8.235905 CCAATTACTAGATAGGTCTAAGCGTAC 58.764 40.741 0.00 0.00 36.54 3.67
116 117 7.392673 CCCAATTACTAGATAGGTCTAAGCGTA 59.607 40.741 0.00 0.00 36.54 4.42
117 118 6.208994 CCCAATTACTAGATAGGTCTAAGCGT 59.791 42.308 0.00 0.00 36.54 5.07
118 119 6.622549 CCCAATTACTAGATAGGTCTAAGCG 58.377 44.000 0.00 0.00 36.54 4.68
119 120 6.014499 TGCCCAATTACTAGATAGGTCTAAGC 60.014 42.308 0.00 0.00 36.54 3.09
120 121 7.379750 GTGCCCAATTACTAGATAGGTCTAAG 58.620 42.308 0.00 0.00 36.54 2.18
121 122 6.015688 CGTGCCCAATTACTAGATAGGTCTAA 60.016 42.308 0.00 0.00 36.54 2.10
122 123 5.475909 CGTGCCCAATTACTAGATAGGTCTA 59.524 44.000 0.00 0.00 35.87 2.59
123 124 4.281182 CGTGCCCAATTACTAGATAGGTCT 59.719 45.833 0.00 0.00 38.52 3.85
124 125 4.557205 CGTGCCCAATTACTAGATAGGTC 58.443 47.826 0.00 0.00 0.00 3.85
125 126 3.244112 GCGTGCCCAATTACTAGATAGGT 60.244 47.826 0.00 0.00 0.00 3.08
126 127 3.006967 AGCGTGCCCAATTACTAGATAGG 59.993 47.826 0.00 0.00 0.00 2.57
127 128 4.238514 GAGCGTGCCCAATTACTAGATAG 58.761 47.826 0.00 0.00 0.00 2.08
128 129 3.639561 TGAGCGTGCCCAATTACTAGATA 59.360 43.478 0.00 0.00 0.00 1.98
129 130 2.434336 TGAGCGTGCCCAATTACTAGAT 59.566 45.455 0.00 0.00 0.00 1.98
130 131 1.828595 TGAGCGTGCCCAATTACTAGA 59.171 47.619 0.00 0.00 0.00 2.43
131 132 2.309528 TGAGCGTGCCCAATTACTAG 57.690 50.000 0.00 0.00 0.00 2.57
132 133 2.434336 AGATGAGCGTGCCCAATTACTA 59.566 45.455 0.00 0.00 0.00 1.82
133 134 1.210478 AGATGAGCGTGCCCAATTACT 59.790 47.619 0.00 0.00 0.00 2.24
134 135 1.668419 AGATGAGCGTGCCCAATTAC 58.332 50.000 0.00 0.00 0.00 1.89
135 136 3.181455 ACATAGATGAGCGTGCCCAATTA 60.181 43.478 0.00 0.00 0.00 1.40
136 137 2.224606 CATAGATGAGCGTGCCCAATT 58.775 47.619 0.00 0.00 0.00 2.32
137 138 1.141657 ACATAGATGAGCGTGCCCAAT 59.858 47.619 0.00 0.00 0.00 3.16
138 139 0.541392 ACATAGATGAGCGTGCCCAA 59.459 50.000 0.00 0.00 0.00 4.12
139 140 0.541392 AACATAGATGAGCGTGCCCA 59.459 50.000 0.00 0.00 0.00 5.36
140 141 0.940126 CAACATAGATGAGCGTGCCC 59.060 55.000 0.00 0.00 0.00 5.36
141 142 1.656652 ACAACATAGATGAGCGTGCC 58.343 50.000 0.00 0.00 0.00 5.01
142 143 2.216488 CGTACAACATAGATGAGCGTGC 59.784 50.000 0.00 0.00 0.00 5.34
143 144 2.216488 GCGTACAACATAGATGAGCGTG 59.784 50.000 0.00 0.00 0.00 5.34
144 145 2.159296 TGCGTACAACATAGATGAGCGT 60.159 45.455 0.00 0.00 0.00 5.07
145 146 2.459934 TGCGTACAACATAGATGAGCG 58.540 47.619 0.00 0.00 0.00 5.03
146 147 4.090642 GCTATGCGTACAACATAGATGAGC 59.909 45.833 25.96 15.16 46.56 4.26
147 148 5.465051 AGCTATGCGTACAACATAGATGAG 58.535 41.667 25.96 10.77 46.56 2.90
148 149 5.453567 AGCTATGCGTACAACATAGATGA 57.546 39.130 25.96 2.46 46.56 2.92
149 150 6.200854 TGAAAGCTATGCGTACAACATAGATG 59.799 38.462 25.96 10.03 43.86 2.90
150 151 6.280643 TGAAAGCTATGCGTACAACATAGAT 58.719 36.000 25.96 20.64 45.91 1.98
151 152 5.656480 TGAAAGCTATGCGTACAACATAGA 58.344 37.500 25.96 10.31 46.56 1.98
152 153 5.966636 TGAAAGCTATGCGTACAACATAG 57.033 39.130 20.83 20.83 46.43 2.23
153 154 5.815222 ACATGAAAGCTATGCGTACAACATA 59.185 36.000 0.00 5.69 0.00 2.29
154 155 4.635765 ACATGAAAGCTATGCGTACAACAT 59.364 37.500 0.00 4.03 0.00 2.71
155 156 4.000325 ACATGAAAGCTATGCGTACAACA 59.000 39.130 0.00 0.00 0.00 3.33
156 157 4.494199 GGACATGAAAGCTATGCGTACAAC 60.494 45.833 0.00 0.00 0.00 3.32
157 158 3.621268 GGACATGAAAGCTATGCGTACAA 59.379 43.478 0.00 0.00 0.00 2.41
158 159 3.118775 AGGACATGAAAGCTATGCGTACA 60.119 43.478 0.00 0.00 0.00 2.90
159 160 3.458189 AGGACATGAAAGCTATGCGTAC 58.542 45.455 0.00 0.00 0.00 3.67
160 161 3.819564 AGGACATGAAAGCTATGCGTA 57.180 42.857 0.00 0.00 0.00 4.42
161 162 2.698855 AGGACATGAAAGCTATGCGT 57.301 45.000 0.00 0.00 0.00 5.24
162 163 3.722147 ACTAGGACATGAAAGCTATGCG 58.278 45.455 0.00 0.00 0.00 4.73
163 164 6.261118 CAAAACTAGGACATGAAAGCTATGC 58.739 40.000 0.00 0.00 0.00 3.14
164 165 6.599244 TCCAAAACTAGGACATGAAAGCTATG 59.401 38.462 0.00 0.00 0.00 2.23
165 166 6.721318 TCCAAAACTAGGACATGAAAGCTAT 58.279 36.000 0.00 0.00 0.00 2.97
166 167 6.121776 TCCAAAACTAGGACATGAAAGCTA 57.878 37.500 0.00 0.00 0.00 3.32
167 168 4.985538 TCCAAAACTAGGACATGAAAGCT 58.014 39.130 0.00 0.00 0.00 3.74
168 169 5.461526 GTTCCAAAACTAGGACATGAAAGC 58.538 41.667 0.00 0.00 34.19 3.51
169 170 5.770162 AGGTTCCAAAACTAGGACATGAAAG 59.230 40.000 0.00 0.00 34.19 2.62
170 171 5.701224 AGGTTCCAAAACTAGGACATGAAA 58.299 37.500 0.00 0.00 34.19 2.69
171 172 5.319043 AGGTTCCAAAACTAGGACATGAA 57.681 39.130 0.00 0.00 34.19 2.57
172 173 4.993705 AGGTTCCAAAACTAGGACATGA 57.006 40.909 0.00 0.00 34.19 3.07
173 174 5.316987 AGAAGGTTCCAAAACTAGGACATG 58.683 41.667 0.00 0.00 34.19 3.21
174 175 5.584551 AGAAGGTTCCAAAACTAGGACAT 57.415 39.130 0.00 0.00 34.19 3.06
175 176 5.367352 TGTAGAAGGTTCCAAAACTAGGACA 59.633 40.000 0.00 0.00 34.19 4.02
176 177 5.861727 TGTAGAAGGTTCCAAAACTAGGAC 58.138 41.667 0.00 0.00 34.19 3.85
177 178 6.465321 CCTTGTAGAAGGTTCCAAAACTAGGA 60.465 42.308 10.54 0.00 43.63 2.94
178 179 5.705905 CCTTGTAGAAGGTTCCAAAACTAGG 59.294 44.000 10.54 0.00 43.63 3.02
179 180 6.803154 CCTTGTAGAAGGTTCCAAAACTAG 57.197 41.667 10.54 0.00 43.63 2.57
192 193 5.238583 ACCGATTCAGAAACCTTGTAGAAG 58.761 41.667 0.00 0.00 0.00 2.85
193 194 5.223449 ACCGATTCAGAAACCTTGTAGAA 57.777 39.130 0.00 0.00 0.00 2.10
194 195 4.884668 ACCGATTCAGAAACCTTGTAGA 57.115 40.909 0.00 0.00 0.00 2.59
195 196 5.941948 AAACCGATTCAGAAACCTTGTAG 57.058 39.130 0.00 0.00 0.00 2.74
196 197 6.544564 AGAAAAACCGATTCAGAAACCTTGTA 59.455 34.615 0.00 0.00 0.00 2.41
197 198 5.359860 AGAAAAACCGATTCAGAAACCTTGT 59.640 36.000 0.00 0.00 0.00 3.16
198 199 5.687285 CAGAAAAACCGATTCAGAAACCTTG 59.313 40.000 0.00 0.00 0.00 3.61
199 200 5.359860 ACAGAAAAACCGATTCAGAAACCTT 59.640 36.000 0.00 0.00 0.00 3.50
200 201 4.887655 ACAGAAAAACCGATTCAGAAACCT 59.112 37.500 0.00 0.00 0.00 3.50
201 202 5.183014 ACAGAAAAACCGATTCAGAAACC 57.817 39.130 0.00 0.00 0.00 3.27
202 203 6.972901 AGAAACAGAAAAACCGATTCAGAAAC 59.027 34.615 0.00 0.00 0.00 2.78
203 204 7.095695 AGAAACAGAAAAACCGATTCAGAAA 57.904 32.000 0.00 0.00 0.00 2.52
204 205 6.693315 AGAAACAGAAAAACCGATTCAGAA 57.307 33.333 0.00 0.00 0.00 3.02
205 206 6.693315 AAGAAACAGAAAAACCGATTCAGA 57.307 33.333 0.00 0.00 0.00 3.27
206 207 7.755582 AAAAGAAACAGAAAAACCGATTCAG 57.244 32.000 0.00 0.00 0.00 3.02
207 208 8.244802 TGTAAAAGAAACAGAAAAACCGATTCA 58.755 29.630 0.00 0.00 0.00 2.57
208 209 8.623310 TGTAAAAGAAACAGAAAAACCGATTC 57.377 30.769 0.00 0.00 0.00 2.52
209 210 8.248253 ACTGTAAAAGAAACAGAAAAACCGATT 58.752 29.630 10.02 0.00 45.89 3.34
210 211 7.768240 ACTGTAAAAGAAACAGAAAAACCGAT 58.232 30.769 10.02 0.00 45.89 4.18
211 212 7.148355 ACTGTAAAAGAAACAGAAAAACCGA 57.852 32.000 10.02 0.00 45.89 4.69
212 213 7.806149 AACTGTAAAAGAAACAGAAAAACCG 57.194 32.000 10.02 0.00 45.89 4.44
376 377 9.541143 ACGAACAAAAATATGAAGTTCCAAATT 57.459 25.926 0.00 0.00 36.20 1.82
377 378 8.977505 CACGAACAAAAATATGAAGTTCCAAAT 58.022 29.630 0.00 0.00 36.20 2.32
378 379 7.976734 ACACGAACAAAAATATGAAGTTCCAAA 59.023 29.630 0.00 0.00 36.20 3.28
379 380 7.484975 ACACGAACAAAAATATGAAGTTCCAA 58.515 30.769 0.00 0.00 36.20 3.53
380 381 7.033530 ACACGAACAAAAATATGAAGTTCCA 57.966 32.000 0.00 0.00 36.20 3.53
381 382 7.924103 AACACGAACAAAAATATGAAGTTCC 57.076 32.000 0.00 0.00 36.20 3.62
382 383 9.829637 GAAAACACGAACAAAAATATGAAGTTC 57.170 29.630 0.00 0.00 36.22 3.01
383 384 9.360093 TGAAAACACGAACAAAAATATGAAGTT 57.640 25.926 0.00 0.00 0.00 2.66
384 385 8.918961 TGAAAACACGAACAAAAATATGAAGT 57.081 26.923 0.00 0.00 0.00 3.01
396 397 9.574458 TCAAGAAATTTATTGAAAACACGAACA 57.426 25.926 22.46 0.00 35.67 3.18
463 464 9.339850 TGAACACAAATTTGAAATTCCAATCAT 57.660 25.926 24.64 0.00 0.00 2.45
464 465 8.728337 TGAACACAAATTTGAAATTCCAATCA 57.272 26.923 24.64 11.31 0.00 2.57
465 466 8.284693 CCTGAACACAAATTTGAAATTCCAATC 58.715 33.333 24.64 9.26 0.00 2.67
466 467 7.992033 TCCTGAACACAAATTTGAAATTCCAAT 59.008 29.630 24.64 0.00 0.00 3.16
467 468 7.334090 TCCTGAACACAAATTTGAAATTCCAA 58.666 30.769 24.64 8.71 0.00 3.53
468 469 6.882656 TCCTGAACACAAATTTGAAATTCCA 58.117 32.000 24.64 12.21 0.00 3.53
469 470 7.967890 ATCCTGAACACAAATTTGAAATTCC 57.032 32.000 24.64 8.67 0.00 3.01
623 624 9.884465 TCAAATTTTTGAAAACACGAACATTTT 57.116 22.222 3.31 0.00 43.62 1.82
638 639 9.884465 AAAACGTGAACATTTTCAAATTTTTGA 57.116 22.222 9.61 1.66 43.52 2.69
640 641 9.884465 TGAAAACGTGAACATTTTCAAATTTTT 57.116 22.222 13.29 11.02 46.53 1.94
648 649 8.303444 GCAATTTTTGAAAACGTGAACATTTTC 58.697 29.630 7.57 7.57 42.58 2.29
649 650 8.020244 AGCAATTTTTGAAAACGTGAACATTTT 58.980 25.926 0.00 0.00 0.00 1.82
650 651 7.481169 CAGCAATTTTTGAAAACGTGAACATTT 59.519 29.630 0.00 0.00 0.00 2.32
651 652 6.960431 CAGCAATTTTTGAAAACGTGAACATT 59.040 30.769 0.00 0.00 0.00 2.71
652 653 6.456718 CCAGCAATTTTTGAAAACGTGAACAT 60.457 34.615 0.00 0.00 0.00 2.71
653 654 5.163913 CCAGCAATTTTTGAAAACGTGAACA 60.164 36.000 0.00 0.00 0.00 3.18
654 655 5.062809 TCCAGCAATTTTTGAAAACGTGAAC 59.937 36.000 0.00 0.00 0.00 3.18
655 656 5.171476 TCCAGCAATTTTTGAAAACGTGAA 58.829 33.333 0.00 0.00 0.00 3.18
656 657 4.748892 TCCAGCAATTTTTGAAAACGTGA 58.251 34.783 0.00 0.00 0.00 4.35
657 658 4.566360 ACTCCAGCAATTTTTGAAAACGTG 59.434 37.500 0.00 0.00 0.00 4.49
658 659 4.754322 ACTCCAGCAATTTTTGAAAACGT 58.246 34.783 0.00 0.00 0.00 3.99
659 660 5.717038 AACTCCAGCAATTTTTGAAAACG 57.283 34.783 0.00 0.00 0.00 3.60
660 661 9.833182 TTTAAAACTCCAGCAATTTTTGAAAAC 57.167 25.926 0.00 0.00 0.00 2.43
690 691 9.704098 GCGACCAATTTTTGTTTTTATTAAACA 57.296 25.926 0.00 0.00 38.26 2.83
691 692 8.874482 CGCGACCAATTTTTGTTTTTATTAAAC 58.126 29.630 0.00 0.00 0.00 2.01
692 693 8.601476 ACGCGACCAATTTTTGTTTTTATTAAA 58.399 25.926 15.93 0.00 0.00 1.52
693 694 8.128016 ACGCGACCAATTTTTGTTTTTATTAA 57.872 26.923 15.93 0.00 0.00 1.40
694 695 7.695869 ACGCGACCAATTTTTGTTTTTATTA 57.304 28.000 15.93 0.00 0.00 0.98
695 696 6.591313 ACGCGACCAATTTTTGTTTTTATT 57.409 29.167 15.93 0.00 0.00 1.40
696 697 6.591313 AACGCGACCAATTTTTGTTTTTAT 57.409 29.167 15.93 0.00 0.00 1.40
697 698 6.090358 TGAAACGCGACCAATTTTTGTTTTTA 59.910 30.769 15.93 0.00 0.00 1.52
698 699 4.930463 AACGCGACCAATTTTTGTTTTT 57.070 31.818 15.93 0.00 0.00 1.94
699 700 4.389077 TGAAACGCGACCAATTTTTGTTTT 59.611 33.333 15.93 0.00 0.00 2.43
700 701 3.927142 TGAAACGCGACCAATTTTTGTTT 59.073 34.783 15.93 0.00 0.00 2.83
701 702 3.512680 TGAAACGCGACCAATTTTTGTT 58.487 36.364 15.93 0.00 0.00 2.83
702 703 3.152261 TGAAACGCGACCAATTTTTGT 57.848 38.095 15.93 0.00 0.00 2.83
703 704 4.506838 TTTGAAACGCGACCAATTTTTG 57.493 36.364 15.93 0.00 0.00 2.44
704 705 5.726729 ATTTTGAAACGCGACCAATTTTT 57.273 30.435 15.93 0.00 0.00 1.94
705 706 8.696410 ATATATTTTGAAACGCGACCAATTTT 57.304 26.923 15.93 0.20 0.00 1.82
706 707 8.696410 AATATATTTTGAAACGCGACCAATTT 57.304 26.923 15.93 1.13 0.00 1.82
707 708 8.696410 AAATATATTTTGAAACGCGACCAATT 57.304 26.923 15.93 7.02 0.00 2.32
708 709 8.696410 AAAATATATTTTGAAACGCGACCAAT 57.304 26.923 20.14 4.60 38.46 3.16
761 764 8.556213 TTCTGTAGCGGTAGATTTGTTTTTAT 57.444 30.769 0.00 0.00 0.00 1.40
762 765 7.966246 TTCTGTAGCGGTAGATTTGTTTTTA 57.034 32.000 0.00 0.00 0.00 1.52
764 767 6.261381 TGTTTCTGTAGCGGTAGATTTGTTTT 59.739 34.615 0.00 0.00 0.00 2.43
767 770 4.689345 GTGTTTCTGTAGCGGTAGATTTGT 59.311 41.667 0.00 0.00 0.00 2.83
768 771 4.688879 TGTGTTTCTGTAGCGGTAGATTTG 59.311 41.667 0.00 0.00 0.00 2.32
774 777 3.859627 GCTCTTGTGTTTCTGTAGCGGTA 60.860 47.826 0.00 0.00 0.00 4.02
776 779 1.461127 GCTCTTGTGTTTCTGTAGCGG 59.539 52.381 0.00 0.00 0.00 5.52
780 783 2.288825 CCGGAGCTCTTGTGTTTCTGTA 60.289 50.000 14.64 0.00 0.00 2.74
785 788 1.673033 CGATCCGGAGCTCTTGTGTTT 60.673 52.381 19.08 0.00 0.00 2.83
791 794 0.752009 TGTAGCGATCCGGAGCTCTT 60.752 55.000 18.54 5.12 43.44 2.85
800 803 4.318121 CGAGCAAATTAACTGTAGCGATCC 60.318 45.833 0.00 0.00 0.00 3.36
801 804 4.503007 TCGAGCAAATTAACTGTAGCGATC 59.497 41.667 0.00 0.00 0.00 3.69
803 806 3.840468 TCGAGCAAATTAACTGTAGCGA 58.160 40.909 0.00 0.00 0.00 4.93
804 807 4.604043 CGATCGAGCAAATTAACTGTAGCG 60.604 45.833 10.26 0.00 0.00 4.26
811 814 4.772046 TGTAGCGATCGAGCAAATTAAC 57.228 40.909 21.57 3.12 40.15 2.01
812 815 5.788055 TTTGTAGCGATCGAGCAAATTAA 57.212 34.783 21.57 2.45 40.15 1.40
813 816 5.332280 CGATTTGTAGCGATCGAGCAAATTA 60.332 40.000 28.26 14.36 45.90 1.40
814 817 4.550831 CGATTTGTAGCGATCGAGCAAATT 60.551 41.667 28.26 19.34 45.90 1.82
815 818 3.060272 CGATTTGTAGCGATCGAGCAAAT 60.060 43.478 28.12 28.12 45.90 2.32
816 819 2.281498 CGATTTGTAGCGATCGAGCAAA 59.719 45.455 21.57 22.96 45.90 3.68
817 820 1.852280 CGATTTGTAGCGATCGAGCAA 59.148 47.619 21.57 16.20 45.90 3.91
818 821 1.477105 CGATTTGTAGCGATCGAGCA 58.523 50.000 21.57 10.87 45.90 4.26
819 822 0.159763 GCGATTTGTAGCGATCGAGC 59.840 55.000 21.57 8.16 45.90 5.03
823 826 1.927174 ACTGTGCGATTTGTAGCGATC 59.073 47.619 0.00 0.00 34.48 3.69
826 829 3.544048 CCAATACTGTGCGATTTGTAGCG 60.544 47.826 0.00 0.00 35.98 4.26
837 846 2.418083 GGCCAGCCCAATACTGTGC 61.418 63.158 0.00 0.00 33.09 4.57
864 873 2.185350 CGATTCGCACAGAGGGCT 59.815 61.111 0.00 0.00 0.00 5.19
875 884 0.506080 GAGCTGCTATGTGCGATTCG 59.494 55.000 0.15 0.62 46.63 3.34
876 885 0.864455 GGAGCTGCTATGTGCGATTC 59.136 55.000 0.15 0.00 46.63 2.52
898 907 1.372997 TGCGTCTGACTTTCGGCTC 60.373 57.895 6.21 0.00 0.00 4.70
1592 1601 1.139095 GAGAAACCTCGGCGTCGAT 59.861 57.895 14.65 0.00 45.04 3.59
1783 1796 3.364366 GGTGCAAACTCAAGTCTGAATCG 60.364 47.826 0.00 0.00 0.00 3.34
1797 1810 2.415697 AATACAACGCTGGTGCAAAC 57.584 45.000 0.00 0.00 39.64 2.93
1799 1812 4.775058 AAATAATACAACGCTGGTGCAA 57.225 36.364 0.00 0.00 39.64 4.08
1820 1833 5.346551 CACAATCGAAACATACGGACTGTTA 59.653 40.000 0.00 0.00 35.84 2.41
1827 1840 5.845953 GCATAATCACAATCGAAACATACGG 59.154 40.000 0.00 0.00 0.00 4.02
1844 1857 6.038603 TCCTTGCAAATCACTAGTGCATAATC 59.961 38.462 18.45 6.04 46.91 1.75
1871 1886 7.592533 CAGGTCAGTATACAAAATATGCAATGC 59.407 37.037 5.50 0.00 0.00 3.56
1879 1894 6.056090 TGCACCAGGTCAGTATACAAAATA 57.944 37.500 5.50 0.00 0.00 1.40
1880 1895 4.917385 TGCACCAGGTCAGTATACAAAAT 58.083 39.130 5.50 0.00 0.00 1.82
1881 1896 4.359434 TGCACCAGGTCAGTATACAAAA 57.641 40.909 5.50 0.00 0.00 2.44
1882 1897 4.568072 ATGCACCAGGTCAGTATACAAA 57.432 40.909 5.50 0.00 0.00 2.83
1883 1898 4.225042 AGAATGCACCAGGTCAGTATACAA 59.775 41.667 5.50 0.00 0.00 2.41
1884 1899 3.774766 AGAATGCACCAGGTCAGTATACA 59.225 43.478 5.50 0.00 0.00 2.29
1885 1900 4.122776 CAGAATGCACCAGGTCAGTATAC 58.877 47.826 0.00 0.00 0.00 1.47
1886 1901 4.030216 TCAGAATGCACCAGGTCAGTATA 58.970 43.478 0.00 0.00 34.76 1.47
1887 1902 2.840038 TCAGAATGCACCAGGTCAGTAT 59.160 45.455 0.00 0.00 34.76 2.12
1888 1903 2.028112 GTCAGAATGCACCAGGTCAGTA 60.028 50.000 0.00 0.00 34.76 2.74
1889 1904 1.059098 TCAGAATGCACCAGGTCAGT 58.941 50.000 0.00 0.00 34.76 3.41
1890 1905 1.002888 AGTCAGAATGCACCAGGTCAG 59.997 52.381 0.00 0.00 34.76 3.51
1891 1906 1.059098 AGTCAGAATGCACCAGGTCA 58.941 50.000 0.00 0.00 34.76 4.02
1892 1907 2.191128 AAGTCAGAATGCACCAGGTC 57.809 50.000 0.00 0.00 34.76 3.85
1893 1908 2.233271 CAAAGTCAGAATGCACCAGGT 58.767 47.619 0.00 0.00 34.76 4.00
1894 1909 1.542915 CCAAAGTCAGAATGCACCAGG 59.457 52.381 0.00 0.00 34.76 4.45
1895 1910 2.507484 TCCAAAGTCAGAATGCACCAG 58.493 47.619 0.00 0.00 34.76 4.00
1896 1911 2.655090 TCCAAAGTCAGAATGCACCA 57.345 45.000 0.00 0.00 34.76 4.17
1897 1912 3.629398 CCTATCCAAAGTCAGAATGCACC 59.371 47.826 0.00 0.00 34.76 5.01
1898 1913 3.629398 CCCTATCCAAAGTCAGAATGCAC 59.371 47.826 0.00 0.00 34.76 4.57
1899 1914 3.523157 TCCCTATCCAAAGTCAGAATGCA 59.477 43.478 0.00 0.00 34.76 3.96
1900 1915 4.156455 TCCCTATCCAAAGTCAGAATGC 57.844 45.455 0.00 0.00 34.76 3.56
1901 1916 5.994250 TCTTCCCTATCCAAAGTCAGAATG 58.006 41.667 0.00 0.00 37.54 2.67
1902 1917 6.642733 TTCTTCCCTATCCAAAGTCAGAAT 57.357 37.500 0.00 0.00 0.00 2.40
1903 1918 6.642733 ATTCTTCCCTATCCAAAGTCAGAA 57.357 37.500 0.00 0.00 0.00 3.02
1904 1919 6.012508 ACAATTCTTCCCTATCCAAAGTCAGA 60.013 38.462 0.00 0.00 0.00 3.27
1905 1920 6.094603 CACAATTCTTCCCTATCCAAAGTCAG 59.905 42.308 0.00 0.00 0.00 3.51
1906 1921 5.945784 CACAATTCTTCCCTATCCAAAGTCA 59.054 40.000 0.00 0.00 0.00 3.41
1907 1922 6.180472 TCACAATTCTTCCCTATCCAAAGTC 58.820 40.000 0.00 0.00 0.00 3.01
1908 1923 6.139679 TCACAATTCTTCCCTATCCAAAGT 57.860 37.500 0.00 0.00 0.00 2.66
1909 1924 6.604795 ACATCACAATTCTTCCCTATCCAAAG 59.395 38.462 0.00 0.00 0.00 2.77
1910 1925 6.493166 ACATCACAATTCTTCCCTATCCAAA 58.507 36.000 0.00 0.00 0.00 3.28
1911 1926 6.078456 ACATCACAATTCTTCCCTATCCAA 57.922 37.500 0.00 0.00 0.00 3.53
1912 1927 5.715439 ACATCACAATTCTTCCCTATCCA 57.285 39.130 0.00 0.00 0.00 3.41
1913 1928 6.122277 TCAACATCACAATTCTTCCCTATCC 58.878 40.000 0.00 0.00 0.00 2.59
1914 1929 7.337942 AGTTCAACATCACAATTCTTCCCTATC 59.662 37.037 0.00 0.00 0.00 2.08
1915 1930 7.121759 CAGTTCAACATCACAATTCTTCCCTAT 59.878 37.037 0.00 0.00 0.00 2.57
1916 1931 6.430925 CAGTTCAACATCACAATTCTTCCCTA 59.569 38.462 0.00 0.00 0.00 3.53
1917 1932 5.242393 CAGTTCAACATCACAATTCTTCCCT 59.758 40.000 0.00 0.00 0.00 4.20
1918 1933 5.464168 CAGTTCAACATCACAATTCTTCCC 58.536 41.667 0.00 0.00 0.00 3.97
1919 1934 5.464168 CCAGTTCAACATCACAATTCTTCC 58.536 41.667 0.00 0.00 0.00 3.46
1920 1935 4.919754 GCCAGTTCAACATCACAATTCTTC 59.080 41.667 0.00 0.00 0.00 2.87
1921 1936 4.341806 TGCCAGTTCAACATCACAATTCTT 59.658 37.500 0.00 0.00 0.00 2.52
1922 1937 3.890756 TGCCAGTTCAACATCACAATTCT 59.109 39.130 0.00 0.00 0.00 2.40
1926 1941 3.635836 TCAATGCCAGTTCAACATCACAA 59.364 39.130 0.00 0.00 0.00 3.33
1932 1947 4.523558 TGAATCATCAATGCCAGTTCAACA 59.476 37.500 0.00 0.00 30.99 3.33
1934 1949 5.725325 TTGAATCATCAATGCCAGTTCAA 57.275 34.783 0.00 0.00 40.59 2.69
1961 1976 3.260475 ACAATGCTGGTGCGAACTATA 57.740 42.857 0.00 0.00 43.34 1.31
1962 1977 2.113860 ACAATGCTGGTGCGAACTAT 57.886 45.000 0.00 0.00 43.34 2.12
1968 1983 5.478233 TTTAGTAATACAATGCTGGTGCG 57.522 39.130 0.00 0.00 43.34 5.34
1991 2006 7.939782 TGCTGACAATTGAAAAAGATCAAGTA 58.060 30.769 13.59 0.00 42.21 2.24
1999 2014 8.980610 TGACAATTATGCTGACAATTGAAAAAG 58.019 29.630 13.59 4.91 42.25 2.27
2046 2061 2.507339 AACACATGAAACCTTTGGCG 57.493 45.000 0.00 0.00 0.00 5.69
2057 2072 5.211454 CGCAATTGTAACAGAAACACATGA 58.789 37.500 7.40 0.00 0.00 3.07
2092 2107 2.158769 ACCTACCGAAAACGGGAAAAGT 60.159 45.455 13.05 0.13 0.00 2.66
2098 2113 2.096335 GCATAAACCTACCGAAAACGGG 59.904 50.000 13.05 0.00 0.00 5.28
2101 2116 3.189702 TGCAGCATAAACCTACCGAAAAC 59.810 43.478 0.00 0.00 0.00 2.43
2102 2117 3.413327 TGCAGCATAAACCTACCGAAAA 58.587 40.909 0.00 0.00 0.00 2.29
2165 2180 4.050553 GAGTAGAGACATCAGAGCAATGC 58.949 47.826 0.00 0.00 0.00 3.56
2185 2203 2.935676 GCCTTGTAAAAGACGGAGGGAG 60.936 54.545 0.00 0.00 35.51 4.30
2218 2236 2.653234 TGATACTCCCTCCGTCTACC 57.347 55.000 0.00 0.00 0.00 3.18
2225 2243 5.105146 GGTGATGATACATGATACTCCCTCC 60.105 48.000 0.00 0.00 0.00 4.30
2261 2281 5.165961 TCCCAGACGAAATCAGAAAGAAT 57.834 39.130 0.00 0.00 0.00 2.40
2262 2282 4.617253 TCCCAGACGAAATCAGAAAGAA 57.383 40.909 0.00 0.00 0.00 2.52
2263 2283 4.202315 TGTTCCCAGACGAAATCAGAAAGA 60.202 41.667 0.00 0.00 0.00 2.52
2270 2290 4.215399 TCACATTTGTTCCCAGACGAAATC 59.785 41.667 0.00 0.00 0.00 2.17
2305 2325 4.202233 ACCTCATGCATCTCATCAGTAGTG 60.202 45.833 0.00 0.00 31.79 2.74
2335 2355 7.707893 ACCTGAAATAAAATGCAATATGAGTGC 59.292 33.333 0.00 0.00 42.55 4.40
2349 2369 5.010112 TCGACCAATTGCACCTGAAATAAAA 59.990 36.000 0.00 0.00 0.00 1.52
2370 2390 5.480772 ACAAGAATTTCTAGAAGAGGGTCGA 59.519 40.000 5.12 0.00 0.00 4.20
2403 2423 1.198637 GATGGCACTGAAACTGCAGTC 59.801 52.381 21.95 9.40 45.54 3.51
2529 2549 9.980780 CTAAGCTTCTTTCTAATTTTGTCTAGC 57.019 33.333 0.00 0.00 0.00 3.42
2539 2559 9.504708 CATCATCATCCTAAGCTTCTTTCTAAT 57.495 33.333 0.00 0.00 0.00 1.73
2544 2564 8.216423 ACATACATCATCATCCTAAGCTTCTTT 58.784 33.333 0.00 0.00 0.00 2.52
2555 2575 6.436261 CAAGCAAGAACATACATCATCATCC 58.564 40.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.