Multiple sequence alignment - TraesCS1D01G058500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G058500 chr1D 100.000 4539 0 0 1 4539 38585057 38580519 0.000000e+00 8383.0
1 TraesCS1D01G058500 chr1D 85.833 3007 373 32 865 3848 38259855 38256879 0.000000e+00 3144.0
2 TraesCS1D01G058500 chr1D 87.027 2721 306 37 797 3493 38368275 38365578 0.000000e+00 3025.0
3 TraesCS1D01G058500 chr1D 86.494 2747 329 23 1015 3727 36618239 36615501 0.000000e+00 2979.0
4 TraesCS1D01G058500 chr1D 85.118 2634 351 33 931 3539 37423716 37426333 0.000000e+00 2654.0
5 TraesCS1D01G058500 chr1D 88.552 725 52 13 1 719 38561234 38560535 0.000000e+00 850.0
6 TraesCS1D01G058500 chr1D 86.383 235 19 4 1 234 38563930 38563708 1.260000e-60 244.0
7 TraesCS1D01G058500 chr1D 94.444 90 5 0 235 324 38563657 38563568 6.120000e-29 139.0
8 TraesCS1D01G058500 chr1D 84.483 116 13 3 191 302 38368414 38368300 4.800000e-20 110.0
9 TraesCS1D01G058500 chr1A 88.729 3540 303 43 1 3491 37506379 37502887 0.000000e+00 4239.0
10 TraesCS1D01G058500 chr1A 85.880 2592 336 19 997 3566 36613124 36615707 0.000000e+00 2732.0
11 TraesCS1D01G058500 chr1A 84.258 2649 362 28 1055 3680 36635559 36638175 0.000000e+00 2531.0
12 TraesCS1D01G058500 chr1A 77.603 317 48 15 394 699 70902839 70903143 2.170000e-38 171.0
13 TraesCS1D01G058500 chr1B 90.992 3086 238 19 420 3491 58329289 58326230 0.000000e+00 4122.0
14 TraesCS1D01G058500 chr1B 84.618 3465 441 48 865 4292 57791811 57788402 0.000000e+00 3362.0
15 TraesCS1D01G058500 chr1B 86.011 2695 330 34 1049 3710 56620524 56617844 0.000000e+00 2844.0
16 TraesCS1D01G058500 chr1B 85.955 2670 343 22 1082 3731 56493579 56490922 0.000000e+00 2824.0
17 TraesCS1D01G058500 chr1B 81.491 805 114 17 2891 3680 57107511 57108295 2.980000e-176 628.0
18 TraesCS1D01G058500 chr1B 95.679 324 13 1 1 324 58329629 58329307 1.870000e-143 520.0
19 TraesCS1D01G058500 chr4B 77.711 332 60 13 407 733 588197516 588197838 1.670000e-44 191.0
20 TraesCS1D01G058500 chr7B 76.437 348 70 11 392 733 54731892 54731551 1.300000e-40 178.0
21 TraesCS1D01G058500 chr2D 77.695 269 48 10 392 651 187131426 187131161 2.190000e-33 154.0
22 TraesCS1D01G058500 chr6D 75.904 332 53 22 392 709 429898621 429898303 1.320000e-30 145.0
23 TraesCS1D01G058500 chr7D 75.155 322 67 12 392 706 46914479 46914164 6.120000e-29 139.0
24 TraesCS1D01G058500 chr2B 80.556 144 22 4 3483 3623 135467708 135467568 6.210000e-19 106.0
25 TraesCS1D01G058500 chr2B 84.466 103 14 1 3525 3625 182129958 182130060 2.890000e-17 100.0
26 TraesCS1D01G058500 chr5D 79.433 141 23 5 3483 3620 289724743 289724880 1.340000e-15 95.3
27 TraesCS1D01G058500 chr5D 81.731 104 18 1 3546 3648 289417781 289417884 8.090000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G058500 chr1D 38580519 38585057 4538 True 8383.0 8383 100.0000 1 4539 1 chr1D.!!$R3 4538
1 TraesCS1D01G058500 chr1D 38256879 38259855 2976 True 3144.0 3144 85.8330 865 3848 1 chr1D.!!$R2 2983
2 TraesCS1D01G058500 chr1D 36615501 36618239 2738 True 2979.0 2979 86.4940 1015 3727 1 chr1D.!!$R1 2712
3 TraesCS1D01G058500 chr1D 37423716 37426333 2617 False 2654.0 2654 85.1180 931 3539 1 chr1D.!!$F1 2608
4 TraesCS1D01G058500 chr1D 38365578 38368414 2836 True 1567.5 3025 85.7550 191 3493 2 chr1D.!!$R4 3302
5 TraesCS1D01G058500 chr1D 38560535 38563930 3395 True 411.0 850 89.7930 1 719 3 chr1D.!!$R5 718
6 TraesCS1D01G058500 chr1A 37502887 37506379 3492 True 4239.0 4239 88.7290 1 3491 1 chr1A.!!$R1 3490
7 TraesCS1D01G058500 chr1A 36613124 36615707 2583 False 2732.0 2732 85.8800 997 3566 1 chr1A.!!$F1 2569
8 TraesCS1D01G058500 chr1A 36635559 36638175 2616 False 2531.0 2531 84.2580 1055 3680 1 chr1A.!!$F2 2625
9 TraesCS1D01G058500 chr1B 57788402 57791811 3409 True 3362.0 3362 84.6180 865 4292 1 chr1B.!!$R3 3427
10 TraesCS1D01G058500 chr1B 56617844 56620524 2680 True 2844.0 2844 86.0110 1049 3710 1 chr1B.!!$R2 2661
11 TraesCS1D01G058500 chr1B 56490922 56493579 2657 True 2824.0 2824 85.9550 1082 3731 1 chr1B.!!$R1 2649
12 TraesCS1D01G058500 chr1B 58326230 58329629 3399 True 2321.0 4122 93.3355 1 3491 2 chr1B.!!$R4 3490
13 TraesCS1D01G058500 chr1B 57107511 57108295 784 False 628.0 628 81.4910 2891 3680 1 chr1B.!!$F1 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
932 3689 1.671901 CTCCGCCACTCCTCCTTCTC 61.672 65.000 0.00 0.0 0.00 2.87 F
1294 4094 0.879400 GCCTGCATCAGAGATGGTCG 60.879 60.000 8.87 0.0 32.44 4.79 F
1328 4134 1.594293 CCTCTTCAACCGCGTGTGT 60.594 57.895 4.92 0.0 0.00 3.72 F
2366 5181 0.698238 TTGCAGATTGGGTAGGCTGT 59.302 50.000 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 4582 1.151450 ACTGGGCTCAACACCTTGG 59.849 57.895 0.00 0.0 0.00 3.61 R
2366 5181 1.412710 GAACCTGTCCATAGCATCGGA 59.587 52.381 0.00 0.0 0.00 4.55 R
3281 6097 6.421801 CCTTTTTCCAACAACATTCTGATGAC 59.578 38.462 0.00 0.0 36.73 3.06 R
4347 7195 0.036952 TCTGGCAGAGCAGTAGCAAC 60.037 55.000 14.43 0.0 45.49 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 123 1.733360 ACAAATTCATGCCAATTGCGC 59.267 42.857 0.00 0.00 45.60 6.09
152 154 3.762288 TGGGGATACACTATCATAGACGC 59.238 47.826 0.00 0.00 44.55 5.19
156 158 4.700692 GGATACACTATCATAGACGCCTGA 59.299 45.833 0.00 0.00 36.91 3.86
255 2943 6.871044 TCGTAGATTCAAACTTCATCTTCG 57.129 37.500 0.00 0.00 38.48 3.79
443 3160 4.192317 GAGCTCGGGATGAACAGTAAATT 58.808 43.478 0.00 0.00 0.00 1.82
448 3165 5.239351 TCGGGATGAACAGTAAATTCGAAA 58.761 37.500 0.00 0.00 0.00 3.46
508 3227 5.523188 TGATGCAAACTTTGACCAATGTTTC 59.477 36.000 18.02 14.46 42.77 2.78
557 3276 2.711009 TGAAATCCCTGGAAGTCACAGT 59.289 45.455 0.00 0.00 34.16 3.55
613 3333 9.860898 ATTCTTTTGTAGATAGCATTTTTGGAC 57.139 29.630 0.00 0.00 31.54 4.02
800 3537 2.905807 GATACTCCTCGTCCGGCCG 61.906 68.421 21.04 21.04 0.00 6.13
929 3686 2.685380 CCTCCGCCACTCCTCCTT 60.685 66.667 0.00 0.00 0.00 3.36
930 3687 2.726351 CCTCCGCCACTCCTCCTTC 61.726 68.421 0.00 0.00 0.00 3.46
931 3688 1.684049 CTCCGCCACTCCTCCTTCT 60.684 63.158 0.00 0.00 0.00 2.85
932 3689 1.671901 CTCCGCCACTCCTCCTTCTC 61.672 65.000 0.00 0.00 0.00 2.87
933 3690 2.726351 CCGCCACTCCTCCTTCTCC 61.726 68.421 0.00 0.00 0.00 3.71
934 3691 1.684049 CGCCACTCCTCCTTCTCCT 60.684 63.158 0.00 0.00 0.00 3.69
983 3752 2.197605 GCCTCCGCTACTCCTCCTC 61.198 68.421 0.00 0.00 0.00 3.71
1294 4094 0.879400 GCCTGCATCAGAGATGGTCG 60.879 60.000 8.87 0.00 32.44 4.79
1328 4134 1.594293 CCTCTTCAACCGCGTGTGT 60.594 57.895 4.92 0.00 0.00 3.72
1334 4140 2.050351 AACCGCGTGTGTCGAGAG 60.050 61.111 4.92 0.00 41.61 3.20
2018 4826 5.607119 ACCAGATACTTTTACTTGCAACG 57.393 39.130 0.00 0.00 0.00 4.10
2109 4923 2.364970 CCAAAGGCCACAGAAATGTCAA 59.635 45.455 5.01 0.00 0.00 3.18
2366 5181 0.698238 TTGCAGATTGGGTAGGCTGT 59.302 50.000 0.00 0.00 0.00 4.40
2433 5248 1.201921 GCCGAACACAGCTGTTTATCG 60.202 52.381 26.72 26.72 40.93 2.92
2541 5357 2.096218 GTCCTGACATTGCGTTCTTCAC 60.096 50.000 0.00 0.00 0.00 3.18
3036 5852 6.238593 GCACTATTCCAGAAATTAGGAGCAAG 60.239 42.308 0.00 0.00 34.91 4.01
3172 5988 3.449737 TGCCTAATGCTTCTACTTACGGT 59.550 43.478 0.00 0.00 42.00 4.83
3256 6072 0.836606 TGGAGAAGAGTGGTTGTGCA 59.163 50.000 0.00 0.00 0.00 4.57
3418 6234 6.246163 TCTCTTTTCAAGGGAAGGGAAATAC 58.754 40.000 0.00 0.00 34.36 1.89
3480 6296 9.844257 ATTTTTCAATGGATTTGGTTGACTAAA 57.156 25.926 0.00 0.00 35.92 1.85
3481 6297 9.672673 TTTTTCAATGGATTTGGTTGACTAAAA 57.327 25.926 0.00 0.00 35.92 1.52
3493 6317 4.622740 GGTTGACTAAAAGATGCATTGCAC 59.377 41.667 14.66 8.20 43.04 4.57
3503 6327 1.812235 TGCATTGCACACCAGACTAG 58.188 50.000 7.38 0.00 31.71 2.57
3506 6330 2.430465 CATTGCACACCAGACTAGCTT 58.570 47.619 0.00 0.00 0.00 3.74
3531 6355 8.856490 TCTCAGAAAGCACAATTAAGTTTTTC 57.144 30.769 0.00 0.00 0.00 2.29
3532 6356 8.686334 TCTCAGAAAGCACAATTAAGTTTTTCT 58.314 29.630 0.00 0.00 35.18 2.52
3597 6433 5.922544 GCTTGTAGCATTGAGTTCATTTTGT 59.077 36.000 0.00 0.00 41.89 2.83
3625 6461 9.630098 GTGTGTCAAAATCACAAGAATATGAAT 57.370 29.630 0.35 0.00 45.36 2.57
3655 6494 7.816945 ATGAATCTTTTAATCTTTGTTGCGG 57.183 32.000 0.00 0.00 0.00 5.69
3676 6515 3.586174 GGGGAAAGGTAGACCAAGTAGTT 59.414 47.826 0.66 0.00 38.89 2.24
3680 6519 6.877855 GGGAAAGGTAGACCAAGTAGTTTAAG 59.122 42.308 0.66 0.00 38.89 1.85
3698 6537 8.593492 AGTTTAAGATGCTGGTTGAAATTTTC 57.407 30.769 2.05 2.05 0.00 2.29
3705 6544 3.306710 GCTGGTTGAAATTTTCGGGGATT 60.307 43.478 4.76 0.00 0.00 3.01
3707 6546 5.567823 GCTGGTTGAAATTTTCGGGGATTAA 60.568 40.000 4.76 0.00 0.00 1.40
3710 6549 7.454225 TGGTTGAAATTTTCGGGGATTAATTT 58.546 30.769 4.76 0.00 34.04 1.82
3734 6573 3.275617 TTATGACGATTGGGGAAGGTG 57.724 47.619 0.00 0.00 0.00 4.00
3753 6592 6.097915 AGGTGTACACATATAATCTTCCCG 57.902 41.667 26.51 0.00 0.00 5.14
3815 6657 0.904649 TGATACCAGCCACCTGAGTG 59.095 55.000 0.00 0.00 41.77 3.51
3819 6661 1.136828 ACCAGCCACCTGAGTGTTTA 58.863 50.000 0.00 0.00 42.88 2.01
3823 6665 3.055094 CCAGCCACCTGAGTGTTTATAGT 60.055 47.826 0.00 0.00 42.88 2.12
3824 6666 4.565652 CCAGCCACCTGAGTGTTTATAGTT 60.566 45.833 0.00 0.00 42.88 2.24
3848 6690 7.553881 TTCTCTAAAACAGTCACTTTCCTTG 57.446 36.000 0.00 0.00 0.00 3.61
3856 6703 4.202357 ACAGTCACTTTCCTTGAGTGCATA 60.202 41.667 7.02 0.00 44.94 3.14
3860 6707 6.072286 AGTCACTTTCCTTGAGTGCATATTTG 60.072 38.462 0.00 0.00 43.23 2.32
3866 6713 4.467082 TCCTTGAGTGCATATTTGGCAATT 59.533 37.500 0.00 0.00 43.91 2.32
3868 6715 5.292589 CCTTGAGTGCATATTTGGCAATTTC 59.707 40.000 0.00 0.00 43.91 2.17
3870 6717 5.170021 TGAGTGCATATTTGGCAATTTCAC 58.830 37.500 0.00 5.72 43.91 3.18
3872 6719 5.413499 AGTGCATATTTGGCAATTTCACTC 58.587 37.500 0.00 0.00 43.91 3.51
3896 6743 4.393990 TCAGTGATCTGCTATGTTTGCAAG 59.606 41.667 0.00 0.00 41.10 4.01
3903 6751 2.162681 GCTATGTTTGCAAGGTGGTCT 58.837 47.619 0.00 0.00 0.00 3.85
3908 6756 3.626930 TGTTTGCAAGGTGGTCTTACTT 58.373 40.909 0.00 0.00 33.68 2.24
3912 6760 6.183360 TGTTTGCAAGGTGGTCTTACTTTTAG 60.183 38.462 0.00 0.00 33.68 1.85
3921 6769 7.715686 AGGTGGTCTTACTTTTAGTTTGAGAAG 59.284 37.037 0.00 0.00 0.00 2.85
3947 6795 8.389603 GTTTGTTTTATATGTCATGGCAAATGG 58.610 33.333 3.01 0.00 0.00 3.16
3952 6800 2.307496 TGTCATGGCAAATGGGTCTT 57.693 45.000 0.00 0.00 0.00 3.01
3953 6801 1.894466 TGTCATGGCAAATGGGTCTTG 59.106 47.619 0.00 0.00 0.00 3.02
3954 6802 1.895131 GTCATGGCAAATGGGTCTTGT 59.105 47.619 0.00 0.00 0.00 3.16
3960 6808 4.415596 TGGCAAATGGGTCTTGTAAGAAT 58.584 39.130 0.00 0.00 36.68 2.40
3969 6817 5.476599 TGGGTCTTGTAAGAATGGATGTTTG 59.523 40.000 0.00 0.00 36.68 2.93
3977 6825 6.660521 TGTAAGAATGGATGTTTGAGATTGCT 59.339 34.615 0.00 0.00 0.00 3.91
3983 6831 3.380637 GGATGTTTGAGATTGCTGATGCT 59.619 43.478 0.00 0.00 40.48 3.79
3984 6832 4.577693 GGATGTTTGAGATTGCTGATGCTA 59.422 41.667 0.00 0.00 40.48 3.49
3985 6833 5.241064 GGATGTTTGAGATTGCTGATGCTAT 59.759 40.000 0.00 0.00 40.48 2.97
3986 6834 6.429078 GGATGTTTGAGATTGCTGATGCTATA 59.571 38.462 0.00 0.00 40.48 1.31
3994 6842 9.729281 TGAGATTGCTGATGCTATATTCAATTA 57.271 29.630 0.00 0.00 40.48 1.40
4030 6878 3.386237 GCTGGACAGCGGGAGTCT 61.386 66.667 8.72 0.00 45.29 3.24
4031 6879 2.888863 CTGGACAGCGGGAGTCTC 59.111 66.667 0.00 0.00 36.29 3.36
4035 6883 1.385756 GGACAGCGGGAGTCTCCTAC 61.386 65.000 18.58 10.73 36.57 3.18
4043 6891 3.142951 CGGGAGTCTCCTACACTCTATG 58.857 54.545 18.58 0.00 40.29 2.23
4045 6893 3.435890 GGGAGTCTCCTACACTCTATGCT 60.436 52.174 18.58 0.00 40.29 3.79
4046 6894 4.202482 GGGAGTCTCCTACACTCTATGCTA 60.202 50.000 18.58 0.00 40.29 3.49
4051 6899 5.008217 GTCTCCTACACTCTATGCTACTGTG 59.992 48.000 0.00 0.00 35.09 3.66
4062 6910 2.141553 TGCTACTGTGAGTTGCACTGC 61.142 52.381 8.48 0.00 46.74 4.40
4067 6915 2.706636 GTGAGTTGCACTGCTGGAA 58.293 52.632 1.98 0.00 44.27 3.53
4075 6923 2.649190 TGCACTGCTGGAACTTTGTTA 58.351 42.857 1.98 0.00 0.00 2.41
4153 7001 7.158697 TGAAGATTCAACTATTTTCCTCACGA 58.841 34.615 0.00 0.00 33.55 4.35
4159 7007 7.165460 TCAACTATTTTCCTCACGATGTAGA 57.835 36.000 0.00 0.00 0.00 2.59
4169 7017 9.476202 TTTCCTCACGATGTAGATAAATGTATG 57.524 33.333 0.00 0.00 0.00 2.39
4170 7018 7.602753 TCCTCACGATGTAGATAAATGTATGG 58.397 38.462 0.00 0.00 0.00 2.74
4171 7019 6.311445 CCTCACGATGTAGATAAATGTATGGC 59.689 42.308 0.00 0.00 0.00 4.40
4175 7023 7.119699 CACGATGTAGATAAATGTATGGCCAAT 59.880 37.037 10.96 0.00 0.00 3.16
4183 7031 8.806146 AGATAAATGTATGGCCAATAATTCACC 58.194 33.333 10.96 2.87 0.00 4.02
4184 7032 6.805016 AAATGTATGGCCAATAATTCACCA 57.195 33.333 10.96 0.00 34.28 4.17
4185 7033 6.409524 AATGTATGGCCAATAATTCACCAG 57.590 37.500 10.96 0.00 33.03 4.00
4196 7044 6.205464 CCAATAATTCACCAGTGCGAGATATT 59.795 38.462 0.00 0.00 0.00 1.28
4217 7065 1.523711 ATAAGTCCGCATGGCACCG 60.524 57.895 0.00 0.00 34.14 4.94
4219 7067 2.845752 TAAGTCCGCATGGCACCGAC 62.846 60.000 10.52 4.32 34.14 4.79
4224 7072 2.983030 GCATGGCACCGACACCAA 60.983 61.111 0.00 0.00 39.96 3.67
4225 7073 2.342650 GCATGGCACCGACACCAAT 61.343 57.895 0.00 0.00 39.96 3.16
4226 7074 1.507630 CATGGCACCGACACCAATG 59.492 57.895 0.00 0.00 39.96 2.82
4227 7075 2.342650 ATGGCACCGACACCAATGC 61.343 57.895 0.00 0.00 39.96 3.56
4246 7094 4.251103 TGCAGGTGATAGAGGAGAAGTA 57.749 45.455 0.00 0.00 0.00 2.24
4248 7096 5.211973 TGCAGGTGATAGAGGAGAAGTAAT 58.788 41.667 0.00 0.00 0.00 1.89
4253 7101 7.925483 CAGGTGATAGAGGAGAAGTAATCAAAG 59.075 40.741 0.00 0.00 0.00 2.77
4282 7130 2.274437 TGATGCGAATGTCTTGCTCTC 58.726 47.619 0.00 0.00 0.00 3.20
4283 7131 2.274437 GATGCGAATGTCTTGCTCTCA 58.726 47.619 0.00 0.00 0.00 3.27
4292 7140 6.090493 CGAATGTCTTGCTCTCATACATATGG 59.910 42.308 7.80 0.00 32.32 2.74
4293 7141 5.219343 TGTCTTGCTCTCATACATATGGG 57.781 43.478 7.80 0.00 35.48 4.00
4294 7142 4.655649 TGTCTTGCTCTCATACATATGGGT 59.344 41.667 7.80 0.00 35.65 4.51
4295 7143 5.221521 TGTCTTGCTCTCATACATATGGGTC 60.222 44.000 7.80 0.00 35.65 4.46
4296 7144 3.942130 TGCTCTCATACATATGGGTCG 57.058 47.619 7.80 0.00 35.65 4.79
4297 7145 2.562738 TGCTCTCATACATATGGGTCGG 59.437 50.000 7.80 0.00 35.65 4.79
4298 7146 2.093973 GCTCTCATACATATGGGTCGGG 60.094 54.545 7.80 0.00 35.65 5.14
4299 7147 2.497675 CTCTCATACATATGGGTCGGGG 59.502 54.545 7.80 0.00 35.65 5.73
4300 7148 2.158219 TCTCATACATATGGGTCGGGGT 60.158 50.000 7.80 0.00 35.65 4.95
4301 7149 1.974957 TCATACATATGGGTCGGGGTG 59.025 52.381 7.80 0.00 34.50 4.61
4302 7150 1.003118 CATACATATGGGTCGGGGTGG 59.997 57.143 7.80 0.00 0.00 4.61
4303 7151 0.030909 TACATATGGGTCGGGGTGGT 60.031 55.000 7.80 0.00 0.00 4.16
4304 7152 0.030909 ACATATGGGTCGGGGTGGTA 60.031 55.000 7.80 0.00 0.00 3.25
4305 7153 0.685097 CATATGGGTCGGGGTGGTAG 59.315 60.000 0.00 0.00 0.00 3.18
4306 7154 0.266753 ATATGGGTCGGGGTGGTAGT 59.733 55.000 0.00 0.00 0.00 2.73
4307 7155 0.688418 TATGGGTCGGGGTGGTAGTG 60.688 60.000 0.00 0.00 0.00 2.74
4308 7156 3.396570 GGGTCGGGGTGGTAGTGG 61.397 72.222 0.00 0.00 0.00 4.00
4309 7157 3.396570 GGTCGGGGTGGTAGTGGG 61.397 72.222 0.00 0.00 0.00 4.61
4310 7158 4.091939 GTCGGGGTGGTAGTGGGC 62.092 72.222 0.00 0.00 0.00 5.36
4311 7159 4.642488 TCGGGGTGGTAGTGGGCA 62.642 66.667 0.00 0.00 0.00 5.36
4312 7160 3.407967 CGGGGTGGTAGTGGGCAT 61.408 66.667 0.00 0.00 0.00 4.40
4313 7161 2.978946 CGGGGTGGTAGTGGGCATT 61.979 63.158 0.00 0.00 0.00 3.56
4314 7162 1.076995 GGGGTGGTAGTGGGCATTC 60.077 63.158 0.00 0.00 0.00 2.67
4315 7163 1.571773 GGGGTGGTAGTGGGCATTCT 61.572 60.000 0.00 0.00 0.00 2.40
4316 7164 1.209621 GGGTGGTAGTGGGCATTCTA 58.790 55.000 0.00 0.00 0.00 2.10
4317 7165 1.134189 GGGTGGTAGTGGGCATTCTAC 60.134 57.143 0.00 0.00 36.70 2.59
4318 7166 1.838077 GGTGGTAGTGGGCATTCTACT 59.162 52.381 10.88 0.00 40.44 2.57
4319 7167 2.158943 GGTGGTAGTGGGCATTCTACTC 60.159 54.545 10.88 6.57 38.24 2.59
4320 7168 2.766828 GTGGTAGTGGGCATTCTACTCT 59.233 50.000 10.88 0.00 38.24 3.24
4321 7169 3.958798 GTGGTAGTGGGCATTCTACTCTA 59.041 47.826 10.88 0.00 38.24 2.43
4322 7170 4.589374 GTGGTAGTGGGCATTCTACTCTAT 59.411 45.833 10.88 0.00 38.24 1.98
4323 7171 5.070580 GTGGTAGTGGGCATTCTACTCTATT 59.929 44.000 10.88 0.00 38.24 1.73
4324 7172 5.665812 TGGTAGTGGGCATTCTACTCTATTT 59.334 40.000 10.88 0.00 38.24 1.40
4325 7173 6.183360 TGGTAGTGGGCATTCTACTCTATTTC 60.183 42.308 10.88 0.00 38.24 2.17
4326 7174 6.042208 GGTAGTGGGCATTCTACTCTATTTCT 59.958 42.308 10.88 0.00 38.24 2.52
4327 7175 6.567602 AGTGGGCATTCTACTCTATTTCTT 57.432 37.500 0.00 0.00 31.01 2.52
4328 7176 6.963322 AGTGGGCATTCTACTCTATTTCTTT 58.037 36.000 0.00 0.00 31.01 2.52
4329 7177 7.051000 AGTGGGCATTCTACTCTATTTCTTTC 58.949 38.462 0.00 0.00 31.01 2.62
4330 7178 7.051000 GTGGGCATTCTACTCTATTTCTTTCT 58.949 38.462 0.00 0.00 0.00 2.52
4331 7179 7.011857 GTGGGCATTCTACTCTATTTCTTTCTG 59.988 40.741 0.00 0.00 0.00 3.02
4332 7180 6.484977 GGGCATTCTACTCTATTTCTTTCTGG 59.515 42.308 0.00 0.00 0.00 3.86
4333 7181 7.051000 GGCATTCTACTCTATTTCTTTCTGGT 58.949 38.462 0.00 0.00 0.00 4.00
4334 7182 8.204836 GGCATTCTACTCTATTTCTTTCTGGTA 58.795 37.037 0.00 0.00 0.00 3.25
4335 7183 9.601217 GCATTCTACTCTATTTCTTTCTGGTAA 57.399 33.333 0.00 0.00 0.00 2.85
4338 7186 8.896722 TCTACTCTATTTCTTTCTGGTAACCT 57.103 34.615 0.00 0.00 0.00 3.50
4339 7187 8.968969 TCTACTCTATTTCTTTCTGGTAACCTC 58.031 37.037 0.00 0.00 0.00 3.85
4340 7188 7.554959 ACTCTATTTCTTTCTGGTAACCTCA 57.445 36.000 0.00 0.00 0.00 3.86
4341 7189 7.974504 ACTCTATTTCTTTCTGGTAACCTCAA 58.025 34.615 0.00 0.00 0.00 3.02
4342 7190 8.606830 ACTCTATTTCTTTCTGGTAACCTCAAT 58.393 33.333 0.00 0.00 0.00 2.57
4343 7191 9.454859 CTCTATTTCTTTCTGGTAACCTCAATT 57.545 33.333 0.00 0.00 0.00 2.32
4344 7192 9.449719 TCTATTTCTTTCTGGTAACCTCAATTC 57.550 33.333 0.00 0.00 0.00 2.17
4345 7193 9.454859 CTATTTCTTTCTGGTAACCTCAATTCT 57.545 33.333 0.00 0.00 0.00 2.40
4346 7194 7.745620 TTTCTTTCTGGTAACCTCAATTCTC 57.254 36.000 0.00 0.00 0.00 2.87
4347 7195 5.479306 TCTTTCTGGTAACCTCAATTCTCG 58.521 41.667 0.00 0.00 0.00 4.04
4348 7196 4.884668 TTCTGGTAACCTCAATTCTCGT 57.115 40.909 0.00 0.00 0.00 4.18
4349 7197 4.884668 TCTGGTAACCTCAATTCTCGTT 57.115 40.909 0.00 0.00 0.00 3.85
4350 7198 4.566004 TCTGGTAACCTCAATTCTCGTTG 58.434 43.478 0.00 0.00 0.00 4.10
4351 7199 3.071479 TGGTAACCTCAATTCTCGTTGC 58.929 45.455 0.00 0.00 0.00 4.17
4352 7200 3.244422 TGGTAACCTCAATTCTCGTTGCT 60.244 43.478 0.00 0.00 0.00 3.91
4353 7201 4.020928 TGGTAACCTCAATTCTCGTTGCTA 60.021 41.667 0.00 0.00 0.00 3.49
4354 7202 4.329256 GGTAACCTCAATTCTCGTTGCTAC 59.671 45.833 0.00 0.00 0.00 3.58
4355 7203 3.963428 ACCTCAATTCTCGTTGCTACT 57.037 42.857 0.00 0.00 0.00 2.57
4356 7204 3.589988 ACCTCAATTCTCGTTGCTACTG 58.410 45.455 0.00 0.00 0.00 2.74
4357 7205 2.349886 CCTCAATTCTCGTTGCTACTGC 59.650 50.000 0.00 0.00 40.20 4.40
4358 7206 3.257393 CTCAATTCTCGTTGCTACTGCT 58.743 45.455 0.00 0.00 40.48 4.24
4359 7207 3.254060 TCAATTCTCGTTGCTACTGCTC 58.746 45.455 0.00 0.00 40.48 4.26
4360 7208 3.056536 TCAATTCTCGTTGCTACTGCTCT 60.057 43.478 0.00 0.00 40.48 4.09
4361 7209 2.354109 TTCTCGTTGCTACTGCTCTG 57.646 50.000 0.00 0.00 40.48 3.35
4362 7210 0.109086 TCTCGTTGCTACTGCTCTGC 60.109 55.000 0.00 0.00 40.48 4.26
4363 7211 1.079819 TCGTTGCTACTGCTCTGCC 60.080 57.895 0.00 0.00 40.48 4.85
4364 7212 1.374631 CGTTGCTACTGCTCTGCCA 60.375 57.895 0.00 0.00 40.48 4.92
4365 7213 1.357258 CGTTGCTACTGCTCTGCCAG 61.357 60.000 0.00 0.00 40.48 4.85
4366 7214 0.036952 GTTGCTACTGCTCTGCCAGA 60.037 55.000 0.00 0.00 40.48 3.86
4367 7215 0.907486 TTGCTACTGCTCTGCCAGAT 59.093 50.000 0.00 0.00 40.48 2.90
4368 7216 0.907486 TGCTACTGCTCTGCCAGATT 59.093 50.000 0.00 0.00 40.48 2.40
4369 7217 2.110578 TGCTACTGCTCTGCCAGATTA 58.889 47.619 0.00 0.00 40.48 1.75
4370 7218 2.501316 TGCTACTGCTCTGCCAGATTAA 59.499 45.455 0.00 0.00 40.48 1.40
4371 7219 3.129871 GCTACTGCTCTGCCAGATTAAG 58.870 50.000 0.00 0.00 36.67 1.85
4372 7220 2.035530 ACTGCTCTGCCAGATTAAGC 57.964 50.000 0.00 0.00 36.67 3.09
4373 7221 0.935898 CTGCTCTGCCAGATTAAGCG 59.064 55.000 0.00 0.00 35.74 4.68
4374 7222 0.250234 TGCTCTGCCAGATTAAGCGT 59.750 50.000 0.00 0.00 35.74 5.07
4375 7223 1.339055 TGCTCTGCCAGATTAAGCGTT 60.339 47.619 0.00 0.00 35.74 4.84
4376 7224 2.093711 TGCTCTGCCAGATTAAGCGTTA 60.094 45.455 0.00 0.00 35.74 3.18
4377 7225 2.285488 GCTCTGCCAGATTAAGCGTTAC 59.715 50.000 0.00 0.00 0.00 2.50
4378 7226 3.521560 CTCTGCCAGATTAAGCGTTACA 58.478 45.455 0.00 0.00 0.00 2.41
4379 7227 3.259064 TCTGCCAGATTAAGCGTTACAC 58.741 45.455 0.00 0.00 0.00 2.90
4380 7228 3.056107 TCTGCCAGATTAAGCGTTACACT 60.056 43.478 0.00 0.00 0.00 3.55
4381 7229 4.158949 TCTGCCAGATTAAGCGTTACACTA 59.841 41.667 0.00 0.00 0.00 2.74
4382 7230 4.823157 TGCCAGATTAAGCGTTACACTAA 58.177 39.130 0.00 0.00 0.00 2.24
4383 7231 5.424757 TGCCAGATTAAGCGTTACACTAAT 58.575 37.500 0.00 0.00 0.00 1.73
4384 7232 5.522460 TGCCAGATTAAGCGTTACACTAATC 59.478 40.000 0.00 0.00 0.00 1.75
4385 7233 5.050295 GCCAGATTAAGCGTTACACTAATCC 60.050 44.000 0.00 0.00 0.00 3.01
4386 7234 6.046593 CCAGATTAAGCGTTACACTAATCCA 58.953 40.000 0.00 0.00 0.00 3.41
4387 7235 6.537301 CCAGATTAAGCGTTACACTAATCCAA 59.463 38.462 0.00 0.00 0.00 3.53
4388 7236 7.254455 CCAGATTAAGCGTTACACTAATCCAAG 60.254 40.741 0.00 0.00 0.00 3.61
4389 7237 5.789710 TTAAGCGTTACACTAATCCAAGC 57.210 39.130 0.00 0.00 0.00 4.01
4390 7238 2.268298 AGCGTTACACTAATCCAAGCG 58.732 47.619 0.00 0.00 0.00 4.68
4391 7239 1.326548 GCGTTACACTAATCCAAGCGG 59.673 52.381 0.00 0.00 0.00 5.52
4392 7240 2.613691 CGTTACACTAATCCAAGCGGT 58.386 47.619 0.00 0.00 0.00 5.68
4393 7241 2.347452 CGTTACACTAATCCAAGCGGTG 59.653 50.000 0.00 0.00 0.00 4.94
4405 7253 4.657952 GCGGTGGCTTAATTCCCT 57.342 55.556 0.00 0.00 35.83 4.20
4406 7254 3.792712 GCGGTGGCTTAATTCCCTA 57.207 52.632 0.00 0.00 35.83 3.53
4407 7255 1.594331 GCGGTGGCTTAATTCCCTAG 58.406 55.000 0.00 0.00 35.83 3.02
4408 7256 1.134189 GCGGTGGCTTAATTCCCTAGT 60.134 52.381 0.00 0.00 35.83 2.57
4409 7257 2.835027 CGGTGGCTTAATTCCCTAGTC 58.165 52.381 0.00 0.00 0.00 2.59
4410 7258 2.484947 CGGTGGCTTAATTCCCTAGTCC 60.485 54.545 0.00 0.00 0.00 3.85
4411 7259 2.778270 GGTGGCTTAATTCCCTAGTCCT 59.222 50.000 0.00 0.00 0.00 3.85
4412 7260 3.181453 GGTGGCTTAATTCCCTAGTCCTC 60.181 52.174 0.00 0.00 0.00 3.71
4413 7261 3.046374 TGGCTTAATTCCCTAGTCCTCC 58.954 50.000 0.00 0.00 0.00 4.30
4414 7262 2.037381 GGCTTAATTCCCTAGTCCTCCG 59.963 54.545 0.00 0.00 0.00 4.63
4415 7263 2.548280 GCTTAATTCCCTAGTCCTCCGC 60.548 54.545 0.00 0.00 0.00 5.54
4416 7264 2.769602 TAATTCCCTAGTCCTCCGCT 57.230 50.000 0.00 0.00 0.00 5.52
4417 7265 1.123928 AATTCCCTAGTCCTCCGCTG 58.876 55.000 0.00 0.00 0.00 5.18
4418 7266 1.403687 ATTCCCTAGTCCTCCGCTGC 61.404 60.000 0.00 0.00 0.00 5.25
4419 7267 2.443016 CCCTAGTCCTCCGCTGCT 60.443 66.667 0.00 0.00 0.00 4.24
4420 7268 2.494530 CCCTAGTCCTCCGCTGCTC 61.495 68.421 0.00 0.00 0.00 4.26
4421 7269 1.754621 CCTAGTCCTCCGCTGCTCA 60.755 63.158 0.00 0.00 0.00 4.26
4422 7270 1.323271 CCTAGTCCTCCGCTGCTCAA 61.323 60.000 0.00 0.00 0.00 3.02
4423 7271 0.749649 CTAGTCCTCCGCTGCTCAAT 59.250 55.000 0.00 0.00 0.00 2.57
4424 7272 0.461548 TAGTCCTCCGCTGCTCAATG 59.538 55.000 0.00 0.00 0.00 2.82
4425 7273 1.078848 GTCCTCCGCTGCTCAATGT 60.079 57.895 0.00 0.00 0.00 2.71
4426 7274 1.078918 TCCTCCGCTGCTCAATGTG 60.079 57.895 0.00 0.00 0.00 3.21
4427 7275 2.758089 CCTCCGCTGCTCAATGTGC 61.758 63.158 0.00 0.00 0.00 4.57
4428 7276 2.747460 TCCGCTGCTCAATGTGCC 60.747 61.111 4.77 0.00 0.00 5.01
4429 7277 3.057548 CCGCTGCTCAATGTGCCA 61.058 61.111 4.77 0.00 0.00 4.92
4430 7278 2.412323 CCGCTGCTCAATGTGCCAT 61.412 57.895 4.77 0.00 0.00 4.40
4431 7279 1.509463 CGCTGCTCAATGTGCCATT 59.491 52.632 4.77 0.00 0.00 3.16
4432 7280 0.800683 CGCTGCTCAATGTGCCATTG 60.801 55.000 17.09 17.09 0.00 2.82
4433 7281 1.082117 GCTGCTCAATGTGCCATTGC 61.082 55.000 17.94 11.06 38.26 3.56
4434 7282 0.530744 CTGCTCAATGTGCCATTGCT 59.469 50.000 17.94 0.00 38.71 3.91
4435 7283 0.245266 TGCTCAATGTGCCATTGCTG 59.755 50.000 17.94 14.64 38.71 4.41
4436 7284 0.528924 GCTCAATGTGCCATTGCTGA 59.471 50.000 17.94 5.78 38.71 4.26
4437 7285 1.136305 GCTCAATGTGCCATTGCTGAT 59.864 47.619 17.94 0.00 38.71 2.90
4438 7286 2.359848 GCTCAATGTGCCATTGCTGATA 59.640 45.455 17.94 5.18 38.71 2.15
4439 7287 3.181484 GCTCAATGTGCCATTGCTGATAA 60.181 43.478 17.94 4.65 38.71 1.75
4440 7288 4.678574 GCTCAATGTGCCATTGCTGATAAA 60.679 41.667 17.94 4.13 38.71 1.40
4441 7289 5.597806 CTCAATGTGCCATTGCTGATAAAT 58.402 37.500 17.94 0.00 38.71 1.40
4442 7290 5.593968 TCAATGTGCCATTGCTGATAAATC 58.406 37.500 17.94 0.00 38.71 2.17
4443 7291 5.361571 TCAATGTGCCATTGCTGATAAATCT 59.638 36.000 17.94 0.00 38.71 2.40
4444 7292 4.906065 TGTGCCATTGCTGATAAATCTC 57.094 40.909 0.00 0.00 38.71 2.75
4445 7293 4.271661 TGTGCCATTGCTGATAAATCTCA 58.728 39.130 0.00 0.00 38.71 3.27
4446 7294 4.891168 TGTGCCATTGCTGATAAATCTCAT 59.109 37.500 0.00 0.00 38.71 2.90
4447 7295 5.361571 TGTGCCATTGCTGATAAATCTCATT 59.638 36.000 0.00 0.00 38.71 2.57
4448 7296 5.919141 GTGCCATTGCTGATAAATCTCATTC 59.081 40.000 0.00 0.00 38.71 2.67
4449 7297 5.831525 TGCCATTGCTGATAAATCTCATTCT 59.168 36.000 0.00 0.00 38.71 2.40
4450 7298 6.016527 TGCCATTGCTGATAAATCTCATTCTC 60.017 38.462 0.00 0.00 38.71 2.87
4451 7299 6.016527 GCCATTGCTGATAAATCTCATTCTCA 60.017 38.462 0.00 0.00 33.53 3.27
4452 7300 7.361127 CCATTGCTGATAAATCTCATTCTCAC 58.639 38.462 0.00 0.00 0.00 3.51
4453 7301 7.012989 CCATTGCTGATAAATCTCATTCTCACA 59.987 37.037 0.00 0.00 0.00 3.58
4454 7302 7.926674 TTGCTGATAAATCTCATTCTCACAA 57.073 32.000 0.00 0.00 0.00 3.33
4455 7303 7.549615 TGCTGATAAATCTCATTCTCACAAG 57.450 36.000 0.00 0.00 0.00 3.16
4456 7304 6.541278 TGCTGATAAATCTCATTCTCACAAGG 59.459 38.462 0.00 0.00 0.00 3.61
4457 7305 6.765036 GCTGATAAATCTCATTCTCACAAGGA 59.235 38.462 0.00 0.00 0.00 3.36
4458 7306 7.041916 GCTGATAAATCTCATTCTCACAAGGAG 60.042 40.741 0.00 0.00 45.49 3.69
4459 7307 7.278135 TGATAAATCTCATTCTCACAAGGAGG 58.722 38.462 0.00 0.00 44.19 4.30
4460 7308 5.768980 AAATCTCATTCTCACAAGGAGGA 57.231 39.130 0.00 0.00 44.19 3.71
4461 7309 5.356291 AATCTCATTCTCACAAGGAGGAG 57.644 43.478 0.00 0.00 44.19 3.69
4462 7310 4.053009 TCTCATTCTCACAAGGAGGAGA 57.947 45.455 0.00 0.00 44.19 3.71
4463 7311 4.618635 TCTCATTCTCACAAGGAGGAGAT 58.381 43.478 0.00 0.00 44.19 2.75
4464 7312 5.770919 TCTCATTCTCACAAGGAGGAGATA 58.229 41.667 0.00 0.00 44.19 1.98
4465 7313 5.596361 TCTCATTCTCACAAGGAGGAGATAC 59.404 44.000 0.00 0.00 44.19 2.24
4466 7314 4.651503 TCATTCTCACAAGGAGGAGATACC 59.348 45.833 0.00 0.00 44.19 2.73
4467 7315 2.656002 TCTCACAAGGAGGAGATACCG 58.344 52.381 0.00 0.00 44.19 4.02
4468 7316 1.067821 CTCACAAGGAGGAGATACCGC 59.932 57.143 0.00 0.00 44.74 5.68
4469 7317 1.115467 CACAAGGAGGAGATACCGCT 58.885 55.000 0.00 0.00 44.74 5.52
4470 7318 1.115467 ACAAGGAGGAGATACCGCTG 58.885 55.000 0.00 0.00 44.74 5.18
4471 7319 1.115467 CAAGGAGGAGATACCGCTGT 58.885 55.000 0.00 0.00 44.74 4.40
4472 7320 1.067821 CAAGGAGGAGATACCGCTGTC 59.932 57.143 0.00 0.00 44.74 3.51
4473 7321 0.259065 AGGAGGAGATACCGCTGTCA 59.741 55.000 0.00 0.00 44.74 3.58
4474 7322 0.671251 GGAGGAGATACCGCTGTCAG 59.329 60.000 0.00 0.00 44.74 3.51
4475 7323 0.031449 GAGGAGATACCGCTGTCAGC 59.969 60.000 15.22 15.22 44.74 4.26
4476 7324 1.068250 GGAGATACCGCTGTCAGCC 59.932 63.158 19.14 4.62 38.18 4.85
4477 7325 1.395826 GGAGATACCGCTGTCAGCCT 61.396 60.000 19.14 9.62 38.18 4.58
4478 7326 0.249238 GAGATACCGCTGTCAGCCTG 60.249 60.000 19.14 12.71 38.18 4.85
4479 7327 1.884926 GATACCGCTGTCAGCCTGC 60.885 63.158 19.14 1.06 38.18 4.85
4484 7332 4.996434 GCTGTCAGCCTGCGGTGT 62.996 66.667 14.27 0.00 38.66 4.16
4485 7333 2.281070 CTGTCAGCCTGCGGTGTT 60.281 61.111 0.00 0.00 38.66 3.32
4486 7334 2.280797 TGTCAGCCTGCGGTGTTC 60.281 61.111 0.00 0.00 38.66 3.18
4487 7335 2.031163 GTCAGCCTGCGGTGTTCT 59.969 61.111 0.00 0.00 38.66 3.01
4488 7336 1.598130 GTCAGCCTGCGGTGTTCTT 60.598 57.895 0.00 0.00 38.66 2.52
4489 7337 0.320421 GTCAGCCTGCGGTGTTCTTA 60.320 55.000 0.00 0.00 38.66 2.10
4490 7338 0.320421 TCAGCCTGCGGTGTTCTTAC 60.320 55.000 0.00 0.00 38.66 2.34
4491 7339 1.374252 AGCCTGCGGTGTTCTTACG 60.374 57.895 0.00 0.00 0.00 3.18
4508 7356 3.442996 CGCCATTCGTCTTCCTCTT 57.557 52.632 0.00 0.00 0.00 2.85
4509 7357 1.002366 CGCCATTCGTCTTCCTCTTG 58.998 55.000 0.00 0.00 0.00 3.02
4510 7358 0.729690 GCCATTCGTCTTCCTCTTGC 59.270 55.000 0.00 0.00 0.00 4.01
4511 7359 1.677217 GCCATTCGTCTTCCTCTTGCT 60.677 52.381 0.00 0.00 0.00 3.91
4512 7360 2.275318 CCATTCGTCTTCCTCTTGCTC 58.725 52.381 0.00 0.00 0.00 4.26
4513 7361 2.093764 CCATTCGTCTTCCTCTTGCTCT 60.094 50.000 0.00 0.00 0.00 4.09
4514 7362 3.594134 CATTCGTCTTCCTCTTGCTCTT 58.406 45.455 0.00 0.00 0.00 2.85
4515 7363 3.753294 TTCGTCTTCCTCTTGCTCTTT 57.247 42.857 0.00 0.00 0.00 2.52
4516 7364 3.753294 TCGTCTTCCTCTTGCTCTTTT 57.247 42.857 0.00 0.00 0.00 2.27
4517 7365 3.654414 TCGTCTTCCTCTTGCTCTTTTC 58.346 45.455 0.00 0.00 0.00 2.29
4518 7366 3.322254 TCGTCTTCCTCTTGCTCTTTTCT 59.678 43.478 0.00 0.00 0.00 2.52
4519 7367 3.431572 CGTCTTCCTCTTGCTCTTTTCTG 59.568 47.826 0.00 0.00 0.00 3.02
4520 7368 4.636249 GTCTTCCTCTTGCTCTTTTCTGA 58.364 43.478 0.00 0.00 0.00 3.27
4521 7369 5.059833 GTCTTCCTCTTGCTCTTTTCTGAA 58.940 41.667 0.00 0.00 0.00 3.02
4522 7370 5.704978 GTCTTCCTCTTGCTCTTTTCTGAAT 59.295 40.000 0.00 0.00 0.00 2.57
4523 7371 6.876257 GTCTTCCTCTTGCTCTTTTCTGAATA 59.124 38.462 0.00 0.00 0.00 1.75
4524 7372 7.552330 GTCTTCCTCTTGCTCTTTTCTGAATAT 59.448 37.037 0.00 0.00 0.00 1.28
4525 7373 7.768120 TCTTCCTCTTGCTCTTTTCTGAATATC 59.232 37.037 0.00 0.00 0.00 1.63
4526 7374 6.950842 TCCTCTTGCTCTTTTCTGAATATCA 58.049 36.000 0.00 0.00 0.00 2.15
4527 7375 7.046652 TCCTCTTGCTCTTTTCTGAATATCAG 58.953 38.462 0.88 0.88 45.59 2.90
4528 7376 6.238429 CCTCTTGCTCTTTTCTGAATATCAGC 60.238 42.308 2.48 0.00 43.95 4.26
4529 7377 6.413052 TCTTGCTCTTTTCTGAATATCAGCT 58.587 36.000 2.48 0.00 43.95 4.24
4530 7378 6.883217 TCTTGCTCTTTTCTGAATATCAGCTT 59.117 34.615 2.48 0.00 43.95 3.74
4531 7379 6.674694 TGCTCTTTTCTGAATATCAGCTTC 57.325 37.500 2.48 0.00 43.95 3.86
4532 7380 6.413052 TGCTCTTTTCTGAATATCAGCTTCT 58.587 36.000 2.48 0.00 43.95 2.85
4533 7381 6.883217 TGCTCTTTTCTGAATATCAGCTTCTT 59.117 34.615 2.48 0.00 43.95 2.52
4534 7382 7.392673 TGCTCTTTTCTGAATATCAGCTTCTTT 59.607 33.333 2.48 0.00 43.95 2.52
4535 7383 8.242739 GCTCTTTTCTGAATATCAGCTTCTTTT 58.757 33.333 2.48 0.00 43.95 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 123 2.050144 AGTGTATCCCCACATAGCAGG 58.950 52.381 0.00 0.00 37.82 4.85
152 154 4.264460 AGCTCTGTGTCTAGTTTTCAGG 57.736 45.455 0.00 0.00 0.00 3.86
156 158 7.153315 GGTTTACTAGCTCTGTGTCTAGTTTT 58.847 38.462 14.36 0.59 41.82 2.43
255 2943 9.249457 CTTTCCCTGAAAACTAAAATGAAACTC 57.751 33.333 0.00 0.00 30.84 3.01
486 3205 4.507388 CGAAACATTGGTCAAAGTTTGCAT 59.493 37.500 17.84 0.00 40.77 3.96
500 3219 0.592637 TGCAGGCACTCGAAACATTG 59.407 50.000 0.00 0.00 34.60 2.82
508 3227 2.420628 TGAAAATTTGCAGGCACTCG 57.579 45.000 0.00 0.00 34.60 4.18
594 3314 6.663093 ACAATGGTCCAAAAATGCTATCTACA 59.337 34.615 0.00 0.00 0.00 2.74
598 3318 7.671495 AAAACAATGGTCCAAAAATGCTATC 57.329 32.000 0.00 0.00 0.00 2.08
627 3351 6.093495 GGAAATAACATTCGTGGAACTCATGA 59.907 38.462 0.00 0.00 39.45 3.07
633 3357 5.873179 TCAGGAAATAACATTCGTGGAAC 57.127 39.130 9.12 0.00 42.51 3.62
683 3408 3.518634 TTTCTGTGCCAAACTTTGACC 57.481 42.857 2.87 0.00 0.00 4.02
751 3484 6.073003 CCGATCTCAAATGCTCCCTTATAAAC 60.073 42.308 0.00 0.00 0.00 2.01
752 3485 5.997746 CCGATCTCAAATGCTCCCTTATAAA 59.002 40.000 0.00 0.00 0.00 1.40
753 3486 5.513094 CCCGATCTCAAATGCTCCCTTATAA 60.513 44.000 0.00 0.00 0.00 0.98
754 3487 4.020218 CCCGATCTCAAATGCTCCCTTATA 60.020 45.833 0.00 0.00 0.00 0.98
800 3537 2.037772 TCTGCACTGAGAAAGGGAGAAC 59.962 50.000 0.00 0.00 0.00 3.01
869 3618 4.443266 AGGACGAAGAGCAGCGGC 62.443 66.667 0.00 0.00 41.61 6.53
870 3619 2.202676 GAGGACGAAGAGCAGCGG 60.203 66.667 0.00 0.00 0.00 5.52
871 3620 2.202676 GGAGGACGAAGAGCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
874 3623 0.039180 TAGGTGGAGGACGAAGAGCA 59.961 55.000 0.00 0.00 0.00 4.26
879 3628 1.075050 ACTGTCTAGGTGGAGGACGAA 59.925 52.381 0.00 0.00 33.21 3.85
914 3671 1.682684 GAGAAGGAGGAGTGGCGGA 60.683 63.158 0.00 0.00 0.00 5.54
916 3673 1.261238 AAGGAGAAGGAGGAGTGGCG 61.261 60.000 0.00 0.00 0.00 5.69
917 3674 0.539518 GAAGGAGAAGGAGGAGTGGC 59.460 60.000 0.00 0.00 0.00 5.01
919 3676 2.107366 GGAGAAGGAGAAGGAGGAGTG 58.893 57.143 0.00 0.00 0.00 3.51
920 3677 2.007636 AGGAGAAGGAGAAGGAGGAGT 58.992 52.381 0.00 0.00 0.00 3.85
923 3680 1.007721 TGGAGGAGAAGGAGAAGGAGG 59.992 57.143 0.00 0.00 0.00 4.30
924 3681 2.107366 GTGGAGGAGAAGGAGAAGGAG 58.893 57.143 0.00 0.00 0.00 3.69
925 3682 1.273324 GGTGGAGGAGAAGGAGAAGGA 60.273 57.143 0.00 0.00 0.00 3.36
926 3683 1.199615 GGTGGAGGAGAAGGAGAAGG 58.800 60.000 0.00 0.00 0.00 3.46
927 3684 2.246091 AGGTGGAGGAGAAGGAGAAG 57.754 55.000 0.00 0.00 0.00 2.85
928 3685 2.624557 GCTAGGTGGAGGAGAAGGAGAA 60.625 54.545 0.00 0.00 0.00 2.87
929 3686 1.063567 GCTAGGTGGAGGAGAAGGAGA 60.064 57.143 0.00 0.00 0.00 3.71
930 3687 1.408969 GCTAGGTGGAGGAGAAGGAG 58.591 60.000 0.00 0.00 0.00 3.69
931 3688 0.032017 GGCTAGGTGGAGGAGAAGGA 60.032 60.000 0.00 0.00 0.00 3.36
932 3689 0.325671 TGGCTAGGTGGAGGAGAAGG 60.326 60.000 0.00 0.00 0.00 3.46
933 3690 1.799933 ATGGCTAGGTGGAGGAGAAG 58.200 55.000 0.00 0.00 0.00 2.85
934 3691 2.119495 GAATGGCTAGGTGGAGGAGAA 58.881 52.381 0.00 0.00 0.00 2.87
973 3736 1.591280 GGACAGGGGGAGGAGGAGTA 61.591 65.000 0.00 0.00 0.00 2.59
1180 3980 1.060698 GTAGCAATTCGTCGAACAGGC 59.939 52.381 10.39 13.63 0.00 4.85
1328 4134 3.849951 GGGCCGGATTGCTCTCGA 61.850 66.667 5.05 0.00 0.00 4.04
1354 4160 1.748403 GTGTGGACTGTGAGAGGCA 59.252 57.895 0.00 0.00 0.00 4.75
1774 4582 1.151450 ACTGGGCTCAACACCTTGG 59.849 57.895 0.00 0.00 0.00 3.61
2109 4923 5.882557 CCATGAAGCAAAATACAGTAGGAGT 59.117 40.000 0.00 0.00 0.00 3.85
2366 5181 1.412710 GAACCTGTCCATAGCATCGGA 59.587 52.381 0.00 0.00 0.00 4.55
2758 5574 6.662755 TCCATTTCTACAATAGCCATCAAGT 58.337 36.000 0.00 0.00 0.00 3.16
2972 5788 6.523201 GCACAATTATTTCTACAAAGACCACG 59.477 38.462 0.00 0.00 0.00 4.94
3256 6072 9.847224 ACATAATTTATAAGACGAGAATTGGGT 57.153 29.630 0.00 0.00 0.00 4.51
3281 6097 6.421801 CCTTTTTCCAACAACATTCTGATGAC 59.578 38.462 0.00 0.00 36.73 3.06
3418 6234 3.317603 AGCAATTCAATGTTTTCCCGG 57.682 42.857 0.00 0.00 0.00 5.73
3480 6296 1.542915 GTCTGGTGTGCAATGCATCTT 59.457 47.619 12.38 0.00 41.91 2.40
3481 6297 1.171308 GTCTGGTGTGCAATGCATCT 58.829 50.000 12.38 0.00 41.91 2.90
3493 6317 4.493547 CTTTCTGAGAAGCTAGTCTGGTG 58.506 47.826 0.00 0.00 0.00 4.17
3506 6330 8.686334 AGAAAAACTTAATTGTGCTTTCTGAGA 58.314 29.630 0.00 0.00 34.47 3.27
3531 6355 3.878778 ACTGGCAGGAGCTTTATACAAG 58.121 45.455 20.34 0.00 41.70 3.16
3532 6356 5.630415 ATACTGGCAGGAGCTTTATACAA 57.370 39.130 20.34 0.00 41.70 2.41
3537 6364 5.950544 TTCTTATACTGGCAGGAGCTTTA 57.049 39.130 20.34 0.69 41.70 1.85
3540 6367 4.202409 GGATTTCTTATACTGGCAGGAGCT 60.202 45.833 20.34 0.00 41.70 4.09
3541 6368 4.068599 GGATTTCTTATACTGGCAGGAGC 58.931 47.826 20.34 0.08 41.10 4.70
3655 6494 4.904895 AACTACTTGGTCTACCTTTCCC 57.095 45.455 0.02 0.00 36.82 3.97
3676 6515 6.155827 CCGAAAATTTCAACCAGCATCTTAA 58.844 36.000 6.53 0.00 0.00 1.85
3680 6519 3.253230 CCCGAAAATTTCAACCAGCATC 58.747 45.455 6.53 0.00 0.00 3.91
3713 6552 3.009695 ACACCTTCCCCAATCGTCATAAA 59.990 43.478 0.00 0.00 0.00 1.40
3715 6554 2.193127 ACACCTTCCCCAATCGTCATA 58.807 47.619 0.00 0.00 0.00 2.15
3719 6558 1.002773 GTGTACACCTTCCCCAATCGT 59.997 52.381 15.42 0.00 0.00 3.73
3794 6633 1.279271 ACTCAGGTGGCTGGTATCAAC 59.721 52.381 0.00 0.00 0.00 3.18
3798 6640 1.362224 AACACTCAGGTGGCTGGTAT 58.638 50.000 1.29 0.00 46.85 2.73
3819 6661 9.274206 GGAAAGTGACTGTTTTAGAGAAACTAT 57.726 33.333 0.00 0.00 0.00 2.12
3823 6665 7.827236 TCAAGGAAAGTGACTGTTTTAGAGAAA 59.173 33.333 0.00 0.00 0.00 2.52
3824 6666 7.335627 TCAAGGAAAGTGACTGTTTTAGAGAA 58.664 34.615 0.00 0.00 0.00 2.87
3848 6690 5.413499 AGTGAAATTGCCAAATATGCACTC 58.587 37.500 0.00 0.00 38.72 3.51
3870 6717 4.270566 GCAAACATAGCAGATCACTGAGAG 59.729 45.833 0.00 0.00 46.03 3.20
3872 6719 3.937079 TGCAAACATAGCAGATCACTGAG 59.063 43.478 0.00 0.00 46.03 3.35
3878 6725 3.181493 CCACCTTGCAAACATAGCAGATC 60.181 47.826 0.00 0.00 43.75 2.75
3890 6737 5.442391 ACTAAAAGTAAGACCACCTTGCAA 58.558 37.500 0.00 0.00 39.56 4.08
3896 6743 7.498239 ACTTCTCAAACTAAAAGTAAGACCACC 59.502 37.037 0.00 0.00 30.47 4.61
3921 6769 8.389603 CCATTTGCCATGACATATAAAACAAAC 58.610 33.333 0.00 0.00 0.00 2.93
3928 6776 5.704354 AGACCCATTTGCCATGACATATAA 58.296 37.500 0.00 0.00 0.00 0.98
3938 6786 3.517296 TCTTACAAGACCCATTTGCCA 57.483 42.857 0.00 0.00 0.00 4.92
3947 6795 6.655003 TCTCAAACATCCATTCTTACAAGACC 59.345 38.462 0.00 0.00 34.13 3.85
3952 6800 6.660521 AGCAATCTCAAACATCCATTCTTACA 59.339 34.615 0.00 0.00 0.00 2.41
3953 6801 6.971184 CAGCAATCTCAAACATCCATTCTTAC 59.029 38.462 0.00 0.00 0.00 2.34
3954 6802 6.885918 TCAGCAATCTCAAACATCCATTCTTA 59.114 34.615 0.00 0.00 0.00 2.10
3960 6808 3.129813 GCATCAGCAATCTCAAACATCCA 59.870 43.478 0.00 0.00 41.58 3.41
3984 6832 9.703892 GAGCTCATATATCCGCTAATTGAATAT 57.296 33.333 9.40 0.00 31.96 1.28
3985 6833 8.695456 TGAGCTCATATATCCGCTAATTGAATA 58.305 33.333 13.74 0.00 31.96 1.75
3986 6834 7.559486 TGAGCTCATATATCCGCTAATTGAAT 58.441 34.615 13.74 0.00 31.96 2.57
3994 6842 3.176552 GCATGAGCTCATATATCCGCT 57.823 47.619 28.27 1.43 37.91 5.52
4018 6866 0.966370 GTGTAGGAGACTCCCGCTGT 60.966 60.000 18.32 1.46 43.67 4.40
4019 6867 0.681564 AGTGTAGGAGACTCCCGCTG 60.682 60.000 18.32 0.00 43.67 5.18
4020 6868 0.394625 GAGTGTAGGAGACTCCCGCT 60.395 60.000 18.32 14.84 43.67 5.52
4021 6869 0.394625 AGAGTGTAGGAGACTCCCGC 60.395 60.000 18.32 11.47 40.75 6.13
4022 6870 3.142951 CATAGAGTGTAGGAGACTCCCG 58.857 54.545 18.32 0.00 40.75 5.14
4024 6872 3.827722 AGCATAGAGTGTAGGAGACTCC 58.172 50.000 14.15 14.15 40.75 3.85
4025 6873 5.468746 CAGTAGCATAGAGTGTAGGAGACTC 59.531 48.000 0.00 0.00 43.67 3.36
4027 6875 5.008217 CACAGTAGCATAGAGTGTAGGAGAC 59.992 48.000 0.00 0.00 0.00 3.36
4028 6876 5.104485 TCACAGTAGCATAGAGTGTAGGAGA 60.104 44.000 0.00 0.00 30.94 3.71
4029 6877 5.126779 TCACAGTAGCATAGAGTGTAGGAG 58.873 45.833 0.00 0.00 30.94 3.69
4030 6878 5.112129 TCACAGTAGCATAGAGTGTAGGA 57.888 43.478 0.00 0.00 30.94 2.94
4031 6879 4.884744 ACTCACAGTAGCATAGAGTGTAGG 59.115 45.833 0.00 0.00 38.08 3.18
4035 6883 3.862267 GCAACTCACAGTAGCATAGAGTG 59.138 47.826 0.00 0.00 39.33 3.51
4062 6910 5.995282 TCACCTGTATGTAACAAAGTTCCAG 59.005 40.000 0.00 0.00 37.74 3.86
4108 6956 8.450578 TCTTCAATGAAGTAAAGCAGAAAGAA 57.549 30.769 20.91 0.00 40.24 2.52
4112 6960 8.394971 TGAATCTTCAATGAAGTAAAGCAGAA 57.605 30.769 20.91 0.70 40.24 3.02
4159 7007 8.489676 TGGTGAATTATTGGCCATACATTTAT 57.510 30.769 6.09 0.00 0.00 1.40
4164 7012 4.644234 CACTGGTGAATTATTGGCCATACA 59.356 41.667 6.09 0.00 0.00 2.29
4169 7017 1.202290 CGCACTGGTGAATTATTGGCC 60.202 52.381 0.00 0.00 0.00 5.36
4170 7018 1.742831 TCGCACTGGTGAATTATTGGC 59.257 47.619 4.79 0.00 0.00 4.52
4171 7019 3.270027 TCTCGCACTGGTGAATTATTGG 58.730 45.455 4.79 0.00 32.14 3.16
4175 7023 4.511454 GCAATATCTCGCACTGGTGAATTA 59.489 41.667 4.79 0.00 32.14 1.40
4180 7028 1.655484 TGCAATATCTCGCACTGGTG 58.345 50.000 0.00 0.00 31.95 4.17
4181 7029 2.627515 ATGCAATATCTCGCACTGGT 57.372 45.000 0.00 0.00 41.79 4.00
4182 7030 4.060900 ACTTATGCAATATCTCGCACTGG 58.939 43.478 0.00 0.00 41.79 4.00
4183 7031 4.151335 GGACTTATGCAATATCTCGCACTG 59.849 45.833 0.00 0.00 41.79 3.66
4184 7032 4.310769 GGACTTATGCAATATCTCGCACT 58.689 43.478 0.00 0.00 41.79 4.40
4185 7033 3.121944 CGGACTTATGCAATATCTCGCAC 59.878 47.826 0.00 0.00 41.79 5.34
4196 7044 1.077858 TGCCATGCGGACTTATGCA 60.078 52.632 0.00 0.00 46.51 3.96
4220 7068 2.437281 CTCCTCTATCACCTGCATTGGT 59.563 50.000 0.00 0.00 41.77 3.67
4224 7072 3.652055 ACTTCTCCTCTATCACCTGCAT 58.348 45.455 0.00 0.00 0.00 3.96
4225 7073 3.107402 ACTTCTCCTCTATCACCTGCA 57.893 47.619 0.00 0.00 0.00 4.41
4226 7074 5.303078 TGATTACTTCTCCTCTATCACCTGC 59.697 44.000 0.00 0.00 0.00 4.85
4227 7075 6.968263 TGATTACTTCTCCTCTATCACCTG 57.032 41.667 0.00 0.00 0.00 4.00
4233 7081 9.118300 CAAATGCTTTGATTACTTCTCCTCTAT 57.882 33.333 3.41 0.00 43.26 1.98
4237 7085 5.958955 GCAAATGCTTTGATTACTTCTCCT 58.041 37.500 11.34 0.00 43.26 3.69
4253 7101 2.990774 CATTCGCATCAAGCAAATGC 57.009 45.000 7.64 7.64 40.43 3.56
4259 7107 1.131883 AGCAAGACATTCGCATCAAGC 59.868 47.619 0.00 0.00 40.87 4.01
4265 7113 2.391616 ATGAGAGCAAGACATTCGCA 57.608 45.000 0.00 0.00 0.00 5.10
4266 7114 3.190079 TGTATGAGAGCAAGACATTCGC 58.810 45.455 0.00 0.00 0.00 4.70
4267 7115 6.090493 CCATATGTATGAGAGCAAGACATTCG 59.910 42.308 1.24 0.00 36.56 3.34
4270 7118 5.309020 ACCCATATGTATGAGAGCAAGACAT 59.691 40.000 1.24 0.00 37.93 3.06
4282 7130 1.003118 CCACCCCGACCCATATGTATG 59.997 57.143 1.24 0.00 0.00 2.39
4283 7131 1.358152 CCACCCCGACCCATATGTAT 58.642 55.000 1.24 0.00 0.00 2.29
4292 7140 3.396570 CCCACTACCACCCCGACC 61.397 72.222 0.00 0.00 0.00 4.79
4293 7141 4.091939 GCCCACTACCACCCCGAC 62.092 72.222 0.00 0.00 0.00 4.79
4294 7142 3.935456 ATGCCCACTACCACCCCGA 62.935 63.158 0.00 0.00 0.00 5.14
4295 7143 2.886730 GAATGCCCACTACCACCCCG 62.887 65.000 0.00 0.00 0.00 5.73
4296 7144 1.076995 GAATGCCCACTACCACCCC 60.077 63.158 0.00 0.00 0.00 4.95
4297 7145 1.134189 GTAGAATGCCCACTACCACCC 60.134 57.143 0.00 0.00 34.66 4.61
4298 7146 1.838077 AGTAGAATGCCCACTACCACC 59.162 52.381 0.00 0.00 39.53 4.61
4299 7147 2.766828 AGAGTAGAATGCCCACTACCAC 59.233 50.000 0.00 0.00 39.53 4.16
4300 7148 3.116096 AGAGTAGAATGCCCACTACCA 57.884 47.619 0.00 0.00 39.53 3.25
4301 7149 5.810080 AATAGAGTAGAATGCCCACTACC 57.190 43.478 0.00 0.00 39.53 3.18
4302 7150 7.056844 AGAAATAGAGTAGAATGCCCACTAC 57.943 40.000 0.00 0.00 39.15 2.73
4303 7151 7.676683 AAGAAATAGAGTAGAATGCCCACTA 57.323 36.000 0.00 0.00 0.00 2.74
4304 7152 6.567602 AAGAAATAGAGTAGAATGCCCACT 57.432 37.500 0.00 0.00 0.00 4.00
4305 7153 7.011857 CAGAAAGAAATAGAGTAGAATGCCCAC 59.988 40.741 0.00 0.00 0.00 4.61
4306 7154 7.050377 CAGAAAGAAATAGAGTAGAATGCCCA 58.950 38.462 0.00 0.00 0.00 5.36
4307 7155 6.484977 CCAGAAAGAAATAGAGTAGAATGCCC 59.515 42.308 0.00 0.00 0.00 5.36
4308 7156 7.051000 ACCAGAAAGAAATAGAGTAGAATGCC 58.949 38.462 0.00 0.00 0.00 4.40
4309 7157 9.601217 TTACCAGAAAGAAATAGAGTAGAATGC 57.399 33.333 0.00 0.00 0.00 3.56
4312 7160 9.322769 AGGTTACCAGAAAGAAATAGAGTAGAA 57.677 33.333 3.51 0.00 0.00 2.10
4313 7161 8.896722 AGGTTACCAGAAAGAAATAGAGTAGA 57.103 34.615 3.51 0.00 0.00 2.59
4314 7162 8.750298 TGAGGTTACCAGAAAGAAATAGAGTAG 58.250 37.037 3.51 0.00 0.00 2.57
4315 7163 8.660295 TGAGGTTACCAGAAAGAAATAGAGTA 57.340 34.615 3.51 0.00 0.00 2.59
4316 7164 7.554959 TGAGGTTACCAGAAAGAAATAGAGT 57.445 36.000 3.51 0.00 0.00 3.24
4317 7165 9.454859 AATTGAGGTTACCAGAAAGAAATAGAG 57.545 33.333 3.51 0.00 0.00 2.43
4318 7166 9.449719 GAATTGAGGTTACCAGAAAGAAATAGA 57.550 33.333 3.51 0.00 0.00 1.98
4319 7167 9.454859 AGAATTGAGGTTACCAGAAAGAAATAG 57.545 33.333 3.51 0.00 0.00 1.73
4320 7168 9.449719 GAGAATTGAGGTTACCAGAAAGAAATA 57.550 33.333 3.51 0.00 0.00 1.40
4321 7169 7.119846 CGAGAATTGAGGTTACCAGAAAGAAAT 59.880 37.037 3.51 0.00 0.00 2.17
4322 7170 6.426937 CGAGAATTGAGGTTACCAGAAAGAAA 59.573 38.462 3.51 0.00 0.00 2.52
4323 7171 5.932303 CGAGAATTGAGGTTACCAGAAAGAA 59.068 40.000 3.51 0.00 0.00 2.52
4324 7172 5.011738 ACGAGAATTGAGGTTACCAGAAAGA 59.988 40.000 3.51 0.00 0.00 2.52
4325 7173 5.238583 ACGAGAATTGAGGTTACCAGAAAG 58.761 41.667 3.51 0.00 0.00 2.62
4326 7174 5.223449 ACGAGAATTGAGGTTACCAGAAA 57.777 39.130 3.51 0.00 0.00 2.52
4327 7175 4.884668 ACGAGAATTGAGGTTACCAGAA 57.115 40.909 3.51 0.00 0.00 3.02
4328 7176 4.566004 CAACGAGAATTGAGGTTACCAGA 58.434 43.478 3.51 0.00 0.00 3.86
4329 7177 3.125316 GCAACGAGAATTGAGGTTACCAG 59.875 47.826 3.51 0.00 0.00 4.00
4330 7178 3.071479 GCAACGAGAATTGAGGTTACCA 58.929 45.455 3.51 0.00 0.00 3.25
4331 7179 3.335579 AGCAACGAGAATTGAGGTTACC 58.664 45.455 0.00 0.00 0.00 2.85
4332 7180 5.062308 CAGTAGCAACGAGAATTGAGGTTAC 59.938 44.000 0.00 0.00 0.00 2.50
4333 7181 5.168569 CAGTAGCAACGAGAATTGAGGTTA 58.831 41.667 0.00 0.00 0.00 2.85
4334 7182 3.997021 CAGTAGCAACGAGAATTGAGGTT 59.003 43.478 0.00 0.00 0.00 3.50
4335 7183 3.589988 CAGTAGCAACGAGAATTGAGGT 58.410 45.455 0.00 0.00 0.00 3.85
4336 7184 2.349886 GCAGTAGCAACGAGAATTGAGG 59.650 50.000 0.00 0.00 41.58 3.86
4337 7185 3.257393 AGCAGTAGCAACGAGAATTGAG 58.743 45.455 0.00 0.00 45.49 3.02
4338 7186 3.056536 AGAGCAGTAGCAACGAGAATTGA 60.057 43.478 0.00 0.00 45.49 2.57
4339 7187 3.061831 CAGAGCAGTAGCAACGAGAATTG 59.938 47.826 0.00 0.00 45.49 2.32
4340 7188 3.257393 CAGAGCAGTAGCAACGAGAATT 58.743 45.455 0.00 0.00 45.49 2.17
4341 7189 2.886081 CAGAGCAGTAGCAACGAGAAT 58.114 47.619 0.00 0.00 45.49 2.40
4342 7190 1.670087 GCAGAGCAGTAGCAACGAGAA 60.670 52.381 0.00 0.00 45.49 2.87
4343 7191 0.109086 GCAGAGCAGTAGCAACGAGA 60.109 55.000 0.00 0.00 45.49 4.04
4344 7192 1.080995 GGCAGAGCAGTAGCAACGAG 61.081 60.000 0.00 0.00 45.49 4.18
4345 7193 1.079819 GGCAGAGCAGTAGCAACGA 60.080 57.895 0.00 0.00 45.49 3.85
4346 7194 1.357258 CTGGCAGAGCAGTAGCAACG 61.357 60.000 9.42 0.00 45.49 4.10
4347 7195 0.036952 TCTGGCAGAGCAGTAGCAAC 60.037 55.000 14.43 0.00 45.49 4.17
4348 7196 0.907486 ATCTGGCAGAGCAGTAGCAA 59.093 50.000 23.24 0.00 45.49 3.91
4349 7197 0.907486 AATCTGGCAGAGCAGTAGCA 59.093 50.000 23.24 0.00 45.49 3.49
4350 7198 2.898729 TAATCTGGCAGAGCAGTAGC 57.101 50.000 23.24 0.00 42.56 3.58
4351 7199 3.129871 GCTTAATCTGGCAGAGCAGTAG 58.870 50.000 23.24 14.95 33.68 2.57
4352 7200 2.481969 CGCTTAATCTGGCAGAGCAGTA 60.482 50.000 23.24 9.29 33.07 2.74
4353 7201 1.741732 CGCTTAATCTGGCAGAGCAGT 60.742 52.381 23.24 10.26 33.07 4.40
4354 7202 0.935898 CGCTTAATCTGGCAGAGCAG 59.064 55.000 23.24 17.59 33.07 4.24
4355 7203 0.250234 ACGCTTAATCTGGCAGAGCA 59.750 50.000 23.24 9.97 33.07 4.26
4356 7204 1.373570 AACGCTTAATCTGGCAGAGC 58.626 50.000 23.24 18.43 0.00 4.09
4357 7205 3.307242 GTGTAACGCTTAATCTGGCAGAG 59.693 47.826 23.24 10.15 0.00 3.35
4358 7206 3.056107 AGTGTAACGCTTAATCTGGCAGA 60.056 43.478 21.19 21.19 45.86 4.26
4359 7207 3.262420 AGTGTAACGCTTAATCTGGCAG 58.738 45.455 8.58 8.58 45.86 4.85
4360 7208 3.328382 AGTGTAACGCTTAATCTGGCA 57.672 42.857 0.00 0.00 45.86 4.92
4361 7209 5.050295 GGATTAGTGTAACGCTTAATCTGGC 60.050 44.000 0.64 0.00 45.86 4.85
4362 7210 6.046593 TGGATTAGTGTAACGCTTAATCTGG 58.953 40.000 0.64 0.00 45.86 3.86
4363 7211 7.534085 TTGGATTAGTGTAACGCTTAATCTG 57.466 36.000 0.64 0.00 45.86 2.90
4364 7212 6.258068 GCTTGGATTAGTGTAACGCTTAATCT 59.742 38.462 0.64 0.00 45.86 2.40
4365 7213 6.419771 GCTTGGATTAGTGTAACGCTTAATC 58.580 40.000 0.00 0.00 45.86 1.75
4366 7214 5.006358 CGCTTGGATTAGTGTAACGCTTAAT 59.994 40.000 0.00 0.00 45.86 1.40
4367 7215 4.327898 CGCTTGGATTAGTGTAACGCTTAA 59.672 41.667 0.00 0.00 45.86 1.85
4368 7216 3.861113 CGCTTGGATTAGTGTAACGCTTA 59.139 43.478 0.00 0.00 45.86 3.09
4369 7217 2.671396 CGCTTGGATTAGTGTAACGCTT 59.329 45.455 0.00 0.00 45.86 4.68
4370 7218 2.268298 CGCTTGGATTAGTGTAACGCT 58.732 47.619 0.00 0.00 45.86 5.07
4371 7219 1.326548 CCGCTTGGATTAGTGTAACGC 59.673 52.381 0.00 0.00 36.96 4.84
4372 7220 2.347452 CACCGCTTGGATTAGTGTAACG 59.653 50.000 0.00 0.00 38.19 3.18
4374 7222 5.200116 AGCCACCGCTTGGATTAGTGTAA 62.200 47.826 5.42 0.00 43.59 2.41
4375 7223 3.741200 AGCCACCGCTTGGATTAGTGTA 61.741 50.000 5.42 0.00 43.59 2.90
4376 7224 3.064018 AGCCACCGCTTGGATTAGTGT 62.064 52.381 5.42 0.00 43.59 3.55
4377 7225 0.392998 AGCCACCGCTTGGATTAGTG 60.393 55.000 5.42 0.00 43.59 2.74
4378 7226 1.991230 AGCCACCGCTTGGATTAGT 59.009 52.632 5.42 0.00 43.59 2.24
4379 7227 4.963878 AGCCACCGCTTGGATTAG 57.036 55.556 5.42 0.00 43.59 1.73
4388 7236 1.134189 ACTAGGGAATTAAGCCACCGC 60.134 52.381 0.00 0.00 0.00 5.68
4389 7237 2.484947 GGACTAGGGAATTAAGCCACCG 60.485 54.545 0.00 0.00 0.00 4.94
4390 7238 2.778270 AGGACTAGGGAATTAAGCCACC 59.222 50.000 0.00 0.00 0.00 4.61
4391 7239 3.181453 GGAGGACTAGGGAATTAAGCCAC 60.181 52.174 0.00 0.00 0.00 5.01
4392 7240 3.046374 GGAGGACTAGGGAATTAAGCCA 58.954 50.000 0.00 0.00 0.00 4.75
4393 7241 2.037381 CGGAGGACTAGGGAATTAAGCC 59.963 54.545 0.00 0.00 0.00 4.35
4394 7242 2.548280 GCGGAGGACTAGGGAATTAAGC 60.548 54.545 0.00 0.00 0.00 3.09
4395 7243 2.966516 AGCGGAGGACTAGGGAATTAAG 59.033 50.000 0.00 0.00 0.00 1.85
4396 7244 2.698797 CAGCGGAGGACTAGGGAATTAA 59.301 50.000 0.00 0.00 0.00 1.40
4397 7245 2.317040 CAGCGGAGGACTAGGGAATTA 58.683 52.381 0.00 0.00 0.00 1.40
4398 7246 1.123928 CAGCGGAGGACTAGGGAATT 58.876 55.000 0.00 0.00 0.00 2.17
4399 7247 1.403687 GCAGCGGAGGACTAGGGAAT 61.404 60.000 0.00 0.00 0.00 3.01
4400 7248 2.058595 GCAGCGGAGGACTAGGGAA 61.059 63.158 0.00 0.00 0.00 3.97
4401 7249 2.442272 GCAGCGGAGGACTAGGGA 60.442 66.667 0.00 0.00 0.00 4.20
4402 7250 2.443016 AGCAGCGGAGGACTAGGG 60.443 66.667 0.00 0.00 0.00 3.53
4403 7251 1.323271 TTGAGCAGCGGAGGACTAGG 61.323 60.000 0.00 0.00 0.00 3.02
4404 7252 0.749649 ATTGAGCAGCGGAGGACTAG 59.250 55.000 0.00 0.00 0.00 2.57
4405 7253 0.461548 CATTGAGCAGCGGAGGACTA 59.538 55.000 0.00 0.00 0.00 2.59
4406 7254 1.220206 CATTGAGCAGCGGAGGACT 59.780 57.895 0.00 0.00 0.00 3.85
4407 7255 1.078848 ACATTGAGCAGCGGAGGAC 60.079 57.895 0.00 0.00 0.00 3.85
4408 7256 1.078918 CACATTGAGCAGCGGAGGA 60.079 57.895 0.00 0.00 0.00 3.71
4409 7257 2.758089 GCACATTGAGCAGCGGAGG 61.758 63.158 0.89 0.00 0.00 4.30
4410 7258 2.758089 GGCACATTGAGCAGCGGAG 61.758 63.158 8.34 0.00 0.00 4.63
4411 7259 2.747460 GGCACATTGAGCAGCGGA 60.747 61.111 8.34 0.00 0.00 5.54
4412 7260 3.057548 TGGCACATTGAGCAGCGG 61.058 61.111 8.34 0.00 0.00 5.52
4420 7268 7.950963 ATGAGATTTATCAGCAATGGCACATTG 60.951 37.037 18.26 18.26 44.61 2.82
4421 7269 6.041637 ATGAGATTTATCAGCAATGGCACATT 59.958 34.615 0.00 0.00 44.61 2.71
4422 7270 5.538813 ATGAGATTTATCAGCAATGGCACAT 59.461 36.000 0.00 0.00 44.61 3.21
4423 7271 4.891168 ATGAGATTTATCAGCAATGGCACA 59.109 37.500 0.00 0.00 44.61 4.57
4424 7272 4.906065 TGAGATTTATCAGCAATGGCAC 57.094 40.909 0.00 0.00 44.61 5.01
4425 7273 5.831525 AGAATGAGATTTATCAGCAATGGCA 59.168 36.000 0.00 0.00 44.61 4.92
4426 7274 6.016527 TGAGAATGAGATTTATCAGCAATGGC 60.017 38.462 0.00 0.00 41.61 4.40
4427 7275 7.012989 TGTGAGAATGAGATTTATCAGCAATGG 59.987 37.037 0.00 0.00 31.44 3.16
4428 7276 7.927048 TGTGAGAATGAGATTTATCAGCAATG 58.073 34.615 0.00 0.00 31.44 2.82
4429 7277 8.515695 TTGTGAGAATGAGATTTATCAGCAAT 57.484 30.769 0.00 0.00 31.44 3.56
4430 7278 7.066645 CCTTGTGAGAATGAGATTTATCAGCAA 59.933 37.037 0.00 0.00 31.44 3.91
4431 7279 6.541278 CCTTGTGAGAATGAGATTTATCAGCA 59.459 38.462 0.00 0.00 31.44 4.41
4432 7280 6.765036 TCCTTGTGAGAATGAGATTTATCAGC 59.235 38.462 0.00 0.00 31.44 4.26
4433 7281 7.441760 CCTCCTTGTGAGAATGAGATTTATCAG 59.558 40.741 0.00 0.00 44.42 2.90
4434 7282 7.126268 TCCTCCTTGTGAGAATGAGATTTATCA 59.874 37.037 0.00 0.00 44.42 2.15
4435 7283 7.504403 TCCTCCTTGTGAGAATGAGATTTATC 58.496 38.462 0.00 0.00 44.42 1.75
4436 7284 7.346698 TCTCCTCCTTGTGAGAATGAGATTTAT 59.653 37.037 0.00 0.00 44.42 1.40
4437 7285 6.669591 TCTCCTCCTTGTGAGAATGAGATTTA 59.330 38.462 0.00 0.00 44.42 1.40
4438 7286 5.486775 TCTCCTCCTTGTGAGAATGAGATTT 59.513 40.000 0.00 0.00 44.42 2.17
4439 7287 5.028802 TCTCCTCCTTGTGAGAATGAGATT 58.971 41.667 0.00 0.00 44.42 2.40
4440 7288 4.618635 TCTCCTCCTTGTGAGAATGAGAT 58.381 43.478 0.00 0.00 44.42 2.75
4441 7289 4.053009 TCTCCTCCTTGTGAGAATGAGA 57.947 45.455 0.00 0.00 44.42 3.27
4442 7290 5.221422 GGTATCTCCTCCTTGTGAGAATGAG 60.221 48.000 0.00 0.00 44.42 2.90
4443 7291 4.651503 GGTATCTCCTCCTTGTGAGAATGA 59.348 45.833 0.00 0.00 44.42 2.57
4444 7292 4.500545 CGGTATCTCCTCCTTGTGAGAATG 60.501 50.000 0.00 0.00 44.42 2.67
4445 7293 3.639094 CGGTATCTCCTCCTTGTGAGAAT 59.361 47.826 0.00 0.00 44.42 2.40
4446 7294 3.024547 CGGTATCTCCTCCTTGTGAGAA 58.975 50.000 0.00 0.00 44.42 2.87
4447 7295 2.656002 CGGTATCTCCTCCTTGTGAGA 58.344 52.381 0.00 0.00 44.42 3.27
4448 7296 1.067821 GCGGTATCTCCTCCTTGTGAG 59.932 57.143 0.00 0.00 41.07 3.51
4449 7297 1.112113 GCGGTATCTCCTCCTTGTGA 58.888 55.000 0.00 0.00 0.00 3.58
4450 7298 1.115467 AGCGGTATCTCCTCCTTGTG 58.885 55.000 0.00 0.00 0.00 3.33
4451 7299 1.115467 CAGCGGTATCTCCTCCTTGT 58.885 55.000 0.00 0.00 0.00 3.16
4452 7300 1.067821 GACAGCGGTATCTCCTCCTTG 59.932 57.143 0.00 0.00 0.00 3.61
4453 7301 1.342076 TGACAGCGGTATCTCCTCCTT 60.342 52.381 0.00 0.00 0.00 3.36
4454 7302 0.259065 TGACAGCGGTATCTCCTCCT 59.741 55.000 0.00 0.00 0.00 3.69
4455 7303 0.671251 CTGACAGCGGTATCTCCTCC 59.329 60.000 0.00 0.00 0.00 4.30
4456 7304 0.031449 GCTGACAGCGGTATCTCCTC 59.969 60.000 12.53 0.00 0.00 3.71
4457 7305 1.395826 GGCTGACAGCGGTATCTCCT 61.396 60.000 20.82 0.00 43.62 3.69
4458 7306 1.068250 GGCTGACAGCGGTATCTCC 59.932 63.158 20.82 0.85 43.62 3.71
4459 7307 0.249238 CAGGCTGACAGCGGTATCTC 60.249 60.000 20.82 5.48 43.62 2.75
4460 7308 1.819229 CAGGCTGACAGCGGTATCT 59.181 57.895 20.82 9.20 43.62 1.98
4461 7309 1.884926 GCAGGCTGACAGCGGTATC 60.885 63.158 20.86 6.93 43.62 2.24
4462 7310 2.187946 GCAGGCTGACAGCGGTAT 59.812 61.111 20.86 4.43 43.62 2.73
4478 7326 0.096454 GAATGGCGTAAGAACACCGC 59.904 55.000 0.00 0.00 46.28 5.68
4479 7327 0.368907 CGAATGGCGTAAGAACACCG 59.631 55.000 0.00 0.00 43.02 4.94
4491 7339 0.729690 GCAAGAGGAAGACGAATGGC 59.270 55.000 0.00 0.00 0.00 4.40
4492 7340 2.093764 AGAGCAAGAGGAAGACGAATGG 60.094 50.000 0.00 0.00 0.00 3.16
4493 7341 3.244033 AGAGCAAGAGGAAGACGAATG 57.756 47.619 0.00 0.00 0.00 2.67
4494 7342 3.971245 AAGAGCAAGAGGAAGACGAAT 57.029 42.857 0.00 0.00 0.00 3.34
4495 7343 3.753294 AAAGAGCAAGAGGAAGACGAA 57.247 42.857 0.00 0.00 0.00 3.85
4496 7344 3.322254 AGAAAAGAGCAAGAGGAAGACGA 59.678 43.478 0.00 0.00 0.00 4.20
4497 7345 3.431572 CAGAAAAGAGCAAGAGGAAGACG 59.568 47.826 0.00 0.00 0.00 4.18
4498 7346 4.636249 TCAGAAAAGAGCAAGAGGAAGAC 58.364 43.478 0.00 0.00 0.00 3.01
4499 7347 4.963318 TCAGAAAAGAGCAAGAGGAAGA 57.037 40.909 0.00 0.00 0.00 2.87
4500 7348 7.551974 TGATATTCAGAAAAGAGCAAGAGGAAG 59.448 37.037 0.00 0.00 0.00 3.46
4501 7349 7.397221 TGATATTCAGAAAAGAGCAAGAGGAA 58.603 34.615 0.00 0.00 0.00 3.36
4502 7350 6.950842 TGATATTCAGAAAAGAGCAAGAGGA 58.049 36.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.