Multiple sequence alignment - TraesCS1D01G058200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G058200 chr1D 100.000 4094 0 0 1 4094 38368688 38364595 0.000000e+00 7561
1 TraesCS1D01G058200 chr1D 87.027 2721 306 37 414 3111 38584261 38581565 0.000000e+00 3025
2 TraesCS1D01G058200 chr1D 86.611 2644 306 26 517 3125 38259850 38257220 0.000000e+00 2878
3 TraesCS1D01G058200 chr1D 85.417 2503 339 20 612 3102 36624655 36622167 0.000000e+00 2577
4 TraesCS1D01G058200 chr1D 85.645 2459 337 10 674 3125 37423851 37426300 0.000000e+00 2571
5 TraesCS1D01G058200 chr1D 85.128 2508 351 17 602 3102 36618247 36615755 0.000000e+00 2545
6 TraesCS1D01G058200 chr1D 82.427 956 101 21 3164 4094 38254877 38253964 0.000000e+00 773
7 TraesCS1D01G058200 chr1D 81.328 241 35 9 1 236 475882435 475882670 1.940000e-43 187
8 TraesCS1D01G058200 chr1D 84.483 116 13 3 275 389 38584867 38584756 4.330000e-20 110
9 TraesCS1D01G058200 chr1B 90.527 2639 190 13 301 2916 58116969 58114368 0.000000e+00 3434
10 TraesCS1D01G058200 chr1B 88.913 2760 271 25 414 3164 58328908 58326175 0.000000e+00 3369
11 TraesCS1D01G058200 chr1B 85.930 2644 314 36 521 3125 57791802 57789178 0.000000e+00 2769
12 TraesCS1D01G058200 chr1B 84.806 2501 355 22 611 3102 56493663 56491179 0.000000e+00 2490
13 TraesCS1D01G058200 chr1B 83.527 947 99 17 3164 4094 57787007 57786102 0.000000e+00 832
14 TraesCS1D01G058200 chr1B 85.849 212 27 3 1 210 563441014 563440804 5.330000e-54 222
15 TraesCS1D01G058200 chr1A 86.045 2465 318 22 668 3115 36613183 36615638 0.000000e+00 2623
16 TraesCS1D01G058200 chr7A 84.647 241 32 4 2 239 441571324 441571562 6.840000e-58 235
17 TraesCS1D01G058200 chr7A 87.027 185 21 3 1 183 8687961 8688144 5.360000e-49 206
18 TraesCS1D01G058200 chr4B 87.745 204 22 2 9 210 57805432 57805634 6.840000e-58 235
19 TraesCS1D01G058200 chr4B 84.153 183 27 2 1 182 20016384 20016203 4.210000e-40 176
20 TraesCS1D01G058200 chr5B 87.195 164 18 2 1 162 678323337 678323499 2.510000e-42 183
21 TraesCS1D01G058200 chr2D 85.276 163 23 1 1 163 148247517 148247678 2.530000e-37 167
22 TraesCS1D01G058200 chr2A 84.024 169 21 5 1 167 197899570 197899734 1.520000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G058200 chr1D 38364595 38368688 4093 True 7561.0 7561 100.0000 1 4094 1 chr1D.!!$R1 4093
1 TraesCS1D01G058200 chr1D 37423851 37426300 2449 False 2571.0 2571 85.6450 674 3125 1 chr1D.!!$F1 2451
2 TraesCS1D01G058200 chr1D 36615755 36624655 8900 True 2561.0 2577 85.2725 602 3102 2 chr1D.!!$R2 2500
3 TraesCS1D01G058200 chr1D 38253964 38259850 5886 True 1825.5 2878 84.5190 517 4094 2 chr1D.!!$R3 3577
4 TraesCS1D01G058200 chr1D 38581565 38584867 3302 True 1567.5 3025 85.7550 275 3111 2 chr1D.!!$R4 2836
5 TraesCS1D01G058200 chr1B 58114368 58116969 2601 True 3434.0 3434 90.5270 301 2916 1 chr1B.!!$R2 2615
6 TraesCS1D01G058200 chr1B 58326175 58328908 2733 True 3369.0 3369 88.9130 414 3164 1 chr1B.!!$R3 2750
7 TraesCS1D01G058200 chr1B 56491179 56493663 2484 True 2490.0 2490 84.8060 611 3102 1 chr1B.!!$R1 2491
8 TraesCS1D01G058200 chr1B 57786102 57791802 5700 True 1800.5 2769 84.7285 521 4094 2 chr1B.!!$R5 3573
9 TraesCS1D01G058200 chr1A 36613183 36615638 2455 False 2623.0 2623 86.0450 668 3115 1 chr1A.!!$F1 2447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.030235 TGAGACGTGAACGGTCAGTG 59.970 55.0 1.63 1.38 44.95 3.66 F
162 163 0.030369 GAGACGTGAACGGTCAGTGT 59.970 55.0 1.63 5.51 44.95 3.55 F
206 207 0.108019 GGGCGTTTAAGGGATCGGAT 59.892 55.0 0.00 0.00 0.00 4.18 F
602 1095 0.179073 CCTCGTCCACCTAGCCAATG 60.179 60.0 0.00 0.00 0.00 2.82 F
1286 1860 0.253630 ATGGTGGCTAAAGGGGGAGA 60.254 55.0 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1849 0.624500 AGCAGGCATCTCCCCCTTTA 60.625 55.000 0.00 0.00 34.51 1.85 R
1281 1855 1.145819 GACAGAGCAGGCATCTCCC 59.854 63.158 0.00 0.00 34.51 4.30 R
1437 2012 1.457823 TTGCTCTGGCCTTGCACAAG 61.458 55.000 15.34 3.32 36.37 3.16 R
1582 2157 2.228822 CCCGGGTTGTCATTTTTCTGAG 59.771 50.000 14.18 0.00 0.00 3.35 R
3237 12536 0.179124 GGGCAGTAGCGACAGAGAAG 60.179 60.000 0.00 0.00 43.41 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.386951 CCGGACATGACCACGGCA 62.387 66.667 14.61 0.00 39.85 5.69
42 43 2.815211 CGGACATGACCACGGCAG 60.815 66.667 14.61 0.00 0.00 4.85
43 44 2.662596 GGACATGACCACGGCAGA 59.337 61.111 9.48 0.00 0.00 4.26
44 45 1.003839 GGACATGACCACGGCAGAA 60.004 57.895 9.48 0.00 0.00 3.02
45 46 1.298859 GGACATGACCACGGCAGAAC 61.299 60.000 9.48 0.00 0.00 3.01
46 47 1.298859 GACATGACCACGGCAGAACC 61.299 60.000 0.00 0.00 0.00 3.62
55 56 4.443266 GGCAGAACCGAGCGAGCT 62.443 66.667 0.00 0.00 0.00 4.09
56 57 2.883253 GCAGAACCGAGCGAGCTC 60.883 66.667 14.61 14.61 39.55 4.09
57 58 2.202676 CAGAACCGAGCGAGCTCC 60.203 66.667 18.19 0.68 39.77 4.70
58 59 3.816524 AGAACCGAGCGAGCTCCG 61.817 66.667 18.19 14.39 39.77 4.63
59 60 4.856607 GAACCGAGCGAGCTCCGG 62.857 72.222 23.25 23.25 39.77 5.14
68 69 2.053282 GCGAGCTCCGGTTAGATTAG 57.947 55.000 8.47 0.00 39.04 1.73
69 70 1.336056 GCGAGCTCCGGTTAGATTAGG 60.336 57.143 8.47 0.00 39.04 2.69
70 71 1.955080 CGAGCTCCGGTTAGATTAGGT 59.045 52.381 8.47 0.00 33.91 3.08
71 72 2.361438 CGAGCTCCGGTTAGATTAGGTT 59.639 50.000 8.47 0.00 33.91 3.50
72 73 3.181478 CGAGCTCCGGTTAGATTAGGTTT 60.181 47.826 8.47 0.00 33.91 3.27
73 74 4.370049 GAGCTCCGGTTAGATTAGGTTTC 58.630 47.826 0.87 0.00 0.00 2.78
74 75 3.773119 AGCTCCGGTTAGATTAGGTTTCA 59.227 43.478 0.00 0.00 0.00 2.69
75 76 4.409247 AGCTCCGGTTAGATTAGGTTTCAT 59.591 41.667 0.00 0.00 0.00 2.57
76 77 4.511826 GCTCCGGTTAGATTAGGTTTCATG 59.488 45.833 0.00 0.00 0.00 3.07
77 78 5.671493 CTCCGGTTAGATTAGGTTTCATGT 58.329 41.667 0.00 0.00 0.00 3.21
78 79 6.057321 TCCGGTTAGATTAGGTTTCATGTT 57.943 37.500 0.00 0.00 0.00 2.71
79 80 5.878116 TCCGGTTAGATTAGGTTTCATGTTG 59.122 40.000 0.00 0.00 0.00 3.33
80 81 5.448632 CCGGTTAGATTAGGTTTCATGTTGC 60.449 44.000 0.00 0.00 0.00 4.17
81 82 5.569413 GGTTAGATTAGGTTTCATGTTGCG 58.431 41.667 0.00 0.00 0.00 4.85
82 83 5.123344 GGTTAGATTAGGTTTCATGTTGCGT 59.877 40.000 0.00 0.00 0.00 5.24
83 84 4.685169 AGATTAGGTTTCATGTTGCGTG 57.315 40.909 0.00 0.00 0.00 5.34
84 85 4.072131 AGATTAGGTTTCATGTTGCGTGT 58.928 39.130 0.00 0.00 0.00 4.49
85 86 5.242434 AGATTAGGTTTCATGTTGCGTGTA 58.758 37.500 0.00 0.00 0.00 2.90
86 87 5.703592 AGATTAGGTTTCATGTTGCGTGTAA 59.296 36.000 0.00 0.00 0.00 2.41
87 88 5.950758 TTAGGTTTCATGTTGCGTGTAAT 57.049 34.783 0.00 0.00 0.00 1.89
88 89 7.551262 AGATTAGGTTTCATGTTGCGTGTAATA 59.449 33.333 0.00 0.00 0.00 0.98
89 90 5.950758 AGGTTTCATGTTGCGTGTAATAA 57.049 34.783 0.00 0.00 0.00 1.40
90 91 6.509418 AGGTTTCATGTTGCGTGTAATAAT 57.491 33.333 0.00 0.00 0.00 1.28
91 92 7.618502 AGGTTTCATGTTGCGTGTAATAATA 57.381 32.000 0.00 0.00 0.00 0.98
92 93 8.220755 AGGTTTCATGTTGCGTGTAATAATAT 57.779 30.769 0.00 0.00 0.00 1.28
93 94 8.128582 AGGTTTCATGTTGCGTGTAATAATATG 58.871 33.333 0.00 0.00 0.00 1.78
94 95 8.126074 GGTTTCATGTTGCGTGTAATAATATGA 58.874 33.333 0.00 0.00 32.50 2.15
95 96 9.497030 GTTTCATGTTGCGTGTAATAATATGAA 57.503 29.630 0.00 0.00 38.93 2.57
101 102 9.715123 TGTTGCGTGTAATAATATGAATTTGAG 57.285 29.630 0.00 0.00 0.00 3.02
102 103 9.169468 GTTGCGTGTAATAATATGAATTTGAGG 57.831 33.333 0.00 0.00 0.00 3.86
103 104 8.445275 TGCGTGTAATAATATGAATTTGAGGT 57.555 30.769 0.00 0.00 0.00 3.85
104 105 8.898761 TGCGTGTAATAATATGAATTTGAGGTT 58.101 29.630 0.00 0.00 0.00 3.50
105 106 9.730420 GCGTGTAATAATATGAATTTGAGGTTT 57.270 29.630 0.00 0.00 0.00 3.27
122 123 8.924511 TTGAGGTTTTCTAATTTGAGATGTCT 57.075 30.769 0.00 0.00 0.00 3.41
123 124 8.327941 TGAGGTTTTCTAATTTGAGATGTCTG 57.672 34.615 0.00 0.00 0.00 3.51
124 125 7.391554 TGAGGTTTTCTAATTTGAGATGTCTGG 59.608 37.037 0.00 0.00 0.00 3.86
125 126 7.234355 AGGTTTTCTAATTTGAGATGTCTGGT 58.766 34.615 0.00 0.00 0.00 4.00
126 127 7.725844 AGGTTTTCTAATTTGAGATGTCTGGTT 59.274 33.333 0.00 0.00 0.00 3.67
127 128 7.809806 GGTTTTCTAATTTGAGATGTCTGGTTG 59.190 37.037 0.00 0.00 0.00 3.77
128 129 8.352942 GTTTTCTAATTTGAGATGTCTGGTTGT 58.647 33.333 0.00 0.00 0.00 3.32
129 130 9.567776 TTTTCTAATTTGAGATGTCTGGTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
130 131 8.777865 TTCTAATTTGAGATGTCTGGTTGTAG 57.222 34.615 0.00 0.00 0.00 2.74
131 132 8.134202 TCTAATTTGAGATGTCTGGTTGTAGA 57.866 34.615 0.00 0.00 0.00 2.59
132 133 8.593679 TCTAATTTGAGATGTCTGGTTGTAGAA 58.406 33.333 0.00 0.00 0.00 2.10
133 134 9.388506 CTAATTTGAGATGTCTGGTTGTAGAAT 57.611 33.333 0.00 0.00 0.00 2.40
134 135 7.856145 ATTTGAGATGTCTGGTTGTAGAATC 57.144 36.000 0.00 0.00 0.00 2.52
135 136 6.358974 TTGAGATGTCTGGTTGTAGAATCA 57.641 37.500 0.00 0.00 0.00 2.57
136 137 6.358974 TGAGATGTCTGGTTGTAGAATCAA 57.641 37.500 0.00 0.00 0.00 2.57
137 138 6.768483 TGAGATGTCTGGTTGTAGAATCAAA 58.232 36.000 0.00 0.00 0.00 2.69
138 139 7.397221 TGAGATGTCTGGTTGTAGAATCAAAT 58.603 34.615 0.00 0.00 0.00 2.32
139 140 8.539544 TGAGATGTCTGGTTGTAGAATCAAATA 58.460 33.333 0.00 0.00 0.00 1.40
140 141 9.553064 GAGATGTCTGGTTGTAGAATCAAATAT 57.447 33.333 0.00 0.00 0.00 1.28
141 142 9.911788 AGATGTCTGGTTGTAGAATCAAATATT 57.088 29.630 0.00 0.00 0.00 1.28
155 156 5.524511 TCAAATATTTGAGACGTGAACGG 57.475 39.130 23.86 0.00 41.88 4.44
156 157 4.992319 TCAAATATTTGAGACGTGAACGGT 59.008 37.500 23.86 0.00 41.88 4.83
157 158 5.119588 TCAAATATTTGAGACGTGAACGGTC 59.880 40.000 23.86 0.00 41.88 4.79
158 159 2.519377 ATTTGAGACGTGAACGGTCA 57.481 45.000 0.00 0.00 44.95 4.02
159 160 1.847818 TTTGAGACGTGAACGGTCAG 58.152 50.000 1.63 0.13 44.95 3.51
160 161 0.742505 TTGAGACGTGAACGGTCAGT 59.257 50.000 1.63 4.04 44.95 3.41
161 162 0.030235 TGAGACGTGAACGGTCAGTG 59.970 55.000 1.63 1.38 44.95 3.66
162 163 0.030369 GAGACGTGAACGGTCAGTGT 59.970 55.000 1.63 5.51 44.95 3.55
163 164 0.458669 AGACGTGAACGGTCAGTGTT 59.541 50.000 1.63 0.00 44.95 3.32
164 165 0.850856 GACGTGAACGGTCAGTGTTC 59.149 55.000 1.63 0.00 44.64 3.18
165 166 0.868602 ACGTGAACGGTCAGTGTTCG 60.869 55.000 1.63 6.06 46.77 3.95
166 167 1.563173 GTGAACGGTCAGTGTTCGC 59.437 57.895 1.63 3.97 46.77 4.70
167 168 1.947146 TGAACGGTCAGTGTTCGCG 60.947 57.895 0.00 0.00 46.77 5.87
168 169 2.654912 GAACGGTCAGTGTTCGCGG 61.655 63.158 6.13 0.00 36.69 6.46
169 170 3.141522 AACGGTCAGTGTTCGCGGA 62.142 57.895 6.13 0.00 0.00 5.54
170 171 3.103911 CGGTCAGTGTTCGCGGAC 61.104 66.667 11.62 11.62 0.00 4.79
171 172 3.103911 GGTCAGTGTTCGCGGACG 61.104 66.667 13.91 0.00 42.01 4.79
172 173 3.764049 GTCAGTGTTCGCGGACGC 61.764 66.667 23.47 23.47 39.84 5.19
197 198 3.845472 CGTCCGCGGGCGTTTAAG 61.845 66.667 41.78 15.36 37.81 1.85
198 199 3.493440 GTCCGCGGGCGTTTAAGG 61.493 66.667 27.83 0.00 37.81 2.69
199 200 4.763646 TCCGCGGGCGTTTAAGGG 62.764 66.667 27.83 0.00 37.81 3.95
200 201 4.763646 CCGCGGGCGTTTAAGGGA 62.764 66.667 20.10 0.00 37.81 4.20
201 202 2.512974 CGCGGGCGTTTAAGGGAT 60.513 61.111 4.64 0.00 34.35 3.85
202 203 2.531376 CGCGGGCGTTTAAGGGATC 61.531 63.158 4.64 0.00 34.35 3.36
203 204 2.531376 GCGGGCGTTTAAGGGATCG 61.531 63.158 0.00 0.00 0.00 3.69
204 205 1.885850 CGGGCGTTTAAGGGATCGG 60.886 63.158 0.00 0.00 0.00 4.18
205 206 1.523524 GGGCGTTTAAGGGATCGGA 59.476 57.895 0.00 0.00 0.00 4.55
206 207 0.108019 GGGCGTTTAAGGGATCGGAT 59.892 55.000 0.00 0.00 0.00 4.18
207 208 1.476291 GGGCGTTTAAGGGATCGGATT 60.476 52.381 0.00 0.00 0.00 3.01
208 209 2.294979 GGCGTTTAAGGGATCGGATTT 58.705 47.619 0.00 0.00 0.00 2.17
209 210 2.032924 GGCGTTTAAGGGATCGGATTTG 59.967 50.000 0.00 0.00 0.00 2.32
210 211 2.032924 GCGTTTAAGGGATCGGATTTGG 59.967 50.000 0.00 0.00 0.00 3.28
211 212 3.275999 CGTTTAAGGGATCGGATTTGGT 58.724 45.455 0.00 0.00 0.00 3.67
212 213 3.311596 CGTTTAAGGGATCGGATTTGGTC 59.688 47.826 0.00 0.00 0.00 4.02
213 214 4.266714 GTTTAAGGGATCGGATTTGGTCA 58.733 43.478 0.00 0.00 0.00 4.02
214 215 4.788925 TTAAGGGATCGGATTTGGTCAT 57.211 40.909 0.00 0.00 0.00 3.06
215 216 2.938956 AGGGATCGGATTTGGTCATC 57.061 50.000 0.00 0.00 0.00 2.92
216 217 1.070758 AGGGATCGGATTTGGTCATCG 59.929 52.381 0.00 0.00 0.00 3.84
217 218 0.868406 GGATCGGATTTGGTCATCGC 59.132 55.000 0.00 0.00 0.00 4.58
218 219 1.581934 GATCGGATTTGGTCATCGCA 58.418 50.000 0.00 0.00 0.00 5.10
219 220 1.939934 GATCGGATTTGGTCATCGCAA 59.060 47.619 0.00 0.00 0.00 4.85
220 221 1.083489 TCGGATTTGGTCATCGCAAC 58.917 50.000 0.00 0.00 0.00 4.17
221 222 1.086696 CGGATTTGGTCATCGCAACT 58.913 50.000 0.00 0.00 0.00 3.16
222 223 2.093921 TCGGATTTGGTCATCGCAACTA 60.094 45.455 0.00 0.00 0.00 2.24
223 224 2.872245 CGGATTTGGTCATCGCAACTAT 59.128 45.455 0.00 0.00 0.00 2.12
224 225 4.055360 CGGATTTGGTCATCGCAACTATA 58.945 43.478 0.00 0.00 0.00 1.31
225 226 4.150627 CGGATTTGGTCATCGCAACTATAG 59.849 45.833 0.00 0.00 0.00 1.31
226 227 5.297547 GGATTTGGTCATCGCAACTATAGA 58.702 41.667 6.78 0.00 0.00 1.98
227 228 5.934625 GGATTTGGTCATCGCAACTATAGAT 59.065 40.000 6.78 0.00 0.00 1.98
228 229 6.128445 GGATTTGGTCATCGCAACTATAGATG 60.128 42.308 6.78 6.16 42.11 2.90
229 230 3.653344 TGGTCATCGCAACTATAGATGC 58.347 45.455 21.60 21.60 40.94 3.91
230 231 3.321968 TGGTCATCGCAACTATAGATGCT 59.678 43.478 26.49 11.17 41.00 3.79
231 232 3.923461 GGTCATCGCAACTATAGATGCTC 59.077 47.826 26.49 14.18 41.00 4.26
232 233 4.321601 GGTCATCGCAACTATAGATGCTCT 60.322 45.833 26.49 14.34 41.00 4.09
233 234 5.106118 GGTCATCGCAACTATAGATGCTCTA 60.106 44.000 26.49 15.45 41.00 2.43
234 235 6.382608 GTCATCGCAACTATAGATGCTCTAA 58.617 40.000 26.49 13.45 41.00 2.10
235 236 6.306837 GTCATCGCAACTATAGATGCTCTAAC 59.693 42.308 26.49 17.42 41.00 2.34
236 237 4.784329 TCGCAACTATAGATGCTCTAACG 58.216 43.478 26.49 13.81 41.00 3.18
237 238 4.514066 TCGCAACTATAGATGCTCTAACGA 59.486 41.667 26.49 15.52 41.00 3.85
238 239 5.008316 TCGCAACTATAGATGCTCTAACGAA 59.992 40.000 26.49 5.27 41.00 3.85
239 240 5.859114 CGCAACTATAGATGCTCTAACGAAT 59.141 40.000 26.49 0.00 41.00 3.34
240 241 6.363626 CGCAACTATAGATGCTCTAACGAATT 59.636 38.462 26.49 0.00 41.00 2.17
241 242 7.537649 CGCAACTATAGATGCTCTAACGAATTA 59.462 37.037 26.49 0.00 41.00 1.40
242 243 9.193133 GCAACTATAGATGCTCTAACGAATTAA 57.807 33.333 23.54 0.00 40.18 1.40
249 250 8.948631 AGATGCTCTAACGAATTAATCTTGAA 57.051 30.769 0.00 0.00 0.00 2.69
250 251 9.383519 AGATGCTCTAACGAATTAATCTTGAAA 57.616 29.630 0.00 0.00 0.00 2.69
251 252 9.427127 GATGCTCTAACGAATTAATCTTGAAAC 57.573 33.333 0.00 0.00 0.00 2.78
252 253 7.453034 TGCTCTAACGAATTAATCTTGAAACG 58.547 34.615 0.00 0.00 0.00 3.60
253 254 7.329962 TGCTCTAACGAATTAATCTTGAAACGA 59.670 33.333 0.00 0.00 0.00 3.85
254 255 8.166706 GCTCTAACGAATTAATCTTGAAACGAA 58.833 33.333 0.00 0.00 0.00 3.85
255 256 9.676899 CTCTAACGAATTAATCTTGAAACGAAG 57.323 33.333 0.00 0.00 0.00 3.79
256 257 8.653338 TCTAACGAATTAATCTTGAAACGAAGG 58.347 33.333 0.00 0.00 0.00 3.46
257 258 5.628134 ACGAATTAATCTTGAAACGAAGGC 58.372 37.500 0.00 0.00 0.00 4.35
258 259 5.028375 CGAATTAATCTTGAAACGAAGGCC 58.972 41.667 0.00 0.00 0.00 5.19
259 260 4.983671 ATTAATCTTGAAACGAAGGCCC 57.016 40.909 0.00 0.00 0.00 5.80
260 261 2.586648 AATCTTGAAACGAAGGCCCT 57.413 45.000 0.00 0.00 0.00 5.19
261 262 3.713826 AATCTTGAAACGAAGGCCCTA 57.286 42.857 0.00 0.00 0.00 3.53
262 263 3.713826 ATCTTGAAACGAAGGCCCTAA 57.286 42.857 0.00 0.00 0.00 2.69
263 264 3.495434 TCTTGAAACGAAGGCCCTAAA 57.505 42.857 0.00 0.00 0.00 1.85
264 265 4.028993 TCTTGAAACGAAGGCCCTAAAT 57.971 40.909 0.00 0.00 0.00 1.40
265 266 4.403734 TCTTGAAACGAAGGCCCTAAATT 58.596 39.130 0.00 0.00 0.00 1.82
266 267 5.562635 TCTTGAAACGAAGGCCCTAAATTA 58.437 37.500 0.00 0.00 0.00 1.40
267 268 6.184789 TCTTGAAACGAAGGCCCTAAATTAT 58.815 36.000 0.00 0.00 0.00 1.28
268 269 5.828299 TGAAACGAAGGCCCTAAATTATG 57.172 39.130 0.00 0.00 0.00 1.90
269 270 5.502079 TGAAACGAAGGCCCTAAATTATGA 58.498 37.500 0.00 0.00 0.00 2.15
270 271 6.126409 TGAAACGAAGGCCCTAAATTATGAT 58.874 36.000 0.00 0.00 0.00 2.45
271 272 6.039270 TGAAACGAAGGCCCTAAATTATGATG 59.961 38.462 0.00 0.00 0.00 3.07
272 273 4.398319 ACGAAGGCCCTAAATTATGATGG 58.602 43.478 0.00 0.00 0.00 3.51
273 274 4.104102 ACGAAGGCCCTAAATTATGATGGA 59.896 41.667 0.00 0.00 0.00 3.41
288 289 5.841957 ATGATGGAATTAACACTTCTGCC 57.158 39.130 0.00 0.00 0.00 4.85
324 326 7.007116 AGGCAGAAACCTTTTCTTCTAGATTT 58.993 34.615 0.00 0.00 36.28 2.17
356 358 7.668525 AACTACCTGTTTCATTTGTACTAGC 57.331 36.000 0.00 0.00 34.84 3.42
389 391 4.573900 AGGAAGCATAGAAGTTGTGTGAG 58.426 43.478 0.65 0.00 0.00 3.51
469 941 1.224315 CCATGTCCCGCATCTCCAA 59.776 57.895 0.00 0.00 35.19 3.53
602 1095 0.179073 CCTCGTCCACCTAGCCAATG 60.179 60.000 0.00 0.00 0.00 2.82
1209 1783 4.529769 CCTGATGCCTTCTCATACTCCATA 59.470 45.833 0.00 0.00 0.00 2.74
1213 1787 5.957771 TGCCTTCTCATACTCCATAGTTT 57.042 39.130 0.00 0.00 37.15 2.66
1281 1855 3.502164 CCAGATGGTGGCTAAAGGG 57.498 57.895 0.00 0.00 40.39 3.95
1286 1860 0.253630 ATGGTGGCTAAAGGGGGAGA 60.254 55.000 0.00 0.00 0.00 3.71
1297 1871 2.509916 GGGGAGATGCCTGCTCTG 59.490 66.667 0.00 0.00 36.66 3.35
1432 2007 7.891782 TGTCGTGACATTTAACTCGATTATTC 58.108 34.615 0.00 0.00 36.21 1.75
1437 2012 7.587757 GTGACATTTAACTCGATTATTCATGCC 59.412 37.037 0.00 0.00 0.00 4.40
1471 2046 0.694771 AGCAATGGACAAGGCAGAGA 59.305 50.000 0.00 0.00 0.00 3.10
1473 2048 2.097825 GCAATGGACAAGGCAGAGATT 58.902 47.619 0.00 0.00 0.00 2.40
1548 2123 5.830000 ATTGCATGATCCATGGATATTCG 57.170 39.130 27.38 16.20 41.46 3.34
1550 2125 4.909001 TGCATGATCCATGGATATTCGAA 58.091 39.130 27.38 8.26 41.64 3.71
1563 2138 5.163248 TGGATATTCGAAATCAGGGCAGTTA 60.163 40.000 0.00 0.00 0.00 2.24
1565 2140 6.073003 GGATATTCGAAATCAGGGCAGTTAAG 60.073 42.308 0.00 0.00 0.00 1.85
1571 2146 1.573108 TCAGGGCAGTTAAGAGAGGG 58.427 55.000 0.00 0.00 0.00 4.30
1573 2148 2.043939 TCAGGGCAGTTAAGAGAGGGTA 59.956 50.000 0.00 0.00 0.00 3.69
1582 2157 6.037281 GCAGTTAAGAGAGGGTACTAAAATGC 59.963 42.308 0.00 0.00 0.00 3.56
1678 2253 1.967319 TGGAAGAAGCAAAGAAGCGT 58.033 45.000 0.00 0.00 40.15 5.07
1679 2254 2.297701 TGGAAGAAGCAAAGAAGCGTT 58.702 42.857 0.00 0.00 40.15 4.84
1683 2258 4.377533 GGAAGAAGCAAAGAAGCGTTAGAC 60.378 45.833 0.00 0.00 40.15 2.59
1880 2458 6.847702 GCATATGCTAAACATGGAATGATGGG 60.848 42.308 20.64 0.00 42.19 4.00
2056 2634 4.642429 GGACACAACTGTTTATCACTCCT 58.358 43.478 0.00 0.00 0.00 3.69
2120 2698 1.546029 GGGGCTGGTTTCTGAAATGAC 59.454 52.381 6.06 2.56 0.00 3.06
2221 2800 7.649533 ATGGATGCACAAGATATCTTTGAAA 57.350 32.000 15.49 9.50 33.11 2.69
2244 2823 7.574021 AATGGTTATAAGCATAGATGGGAGA 57.426 36.000 25.98 0.00 45.54 3.71
2516 3095 1.138069 TCGTGCTGGAAGAACTGTTGA 59.862 47.619 0.00 0.00 41.80 3.18
2576 3155 7.094634 GGGTATAACAGTGAGCATTTCCATATG 60.095 40.741 0.00 0.00 0.00 1.78
2661 3240 7.345691 TCCAGAAATTAGGAGCAATGAATGTA 58.654 34.615 0.00 0.00 0.00 2.29
2670 3249 6.681777 AGGAGCAATGAATGTAAAGTTCAAC 58.318 36.000 0.00 0.00 38.89 3.18
2840 9831 3.999663 GGATCAGTGGAAGAAGTTGACAG 59.000 47.826 0.00 0.00 0.00 3.51
3007 9998 5.175090 AGCTTCAACTACTTCTTTGTTGC 57.825 39.130 0.00 0.00 40.34 4.17
3044 10035 4.793201 AGGAAAGGGAAATATCGGGAAAG 58.207 43.478 0.00 0.00 0.00 2.62
3116 10107 2.019249 AGTTGACGCATTGCATATGCT 58.981 42.857 27.13 6.92 42.50 3.79
3149 12426 5.925907 GCAAAGTTGAACTTTTTGCTTTCA 58.074 33.333 19.77 0.00 45.38 2.69
3159 12436 5.853936 ACTTTTTGCTTTCAATAAGTCCCC 58.146 37.500 7.65 0.00 45.10 4.81
3175 12470 3.834732 CCCCCTGTTAACGAGTCTG 57.165 57.895 0.26 0.00 0.00 3.51
3185 12480 1.333177 AACGAGTCTGTCCTGCTCTT 58.667 50.000 0.00 0.00 0.00 2.85
3189 12484 2.414824 CGAGTCTGTCCTGCTCTTGTAC 60.415 54.545 0.00 0.00 0.00 2.90
3191 12486 2.297597 AGTCTGTCCTGCTCTTGTACAC 59.702 50.000 0.00 0.00 0.00 2.90
3192 12487 2.035961 GTCTGTCCTGCTCTTGTACACA 59.964 50.000 0.00 0.00 0.00 3.72
3195 12490 1.734465 GTCCTGCTCTTGTACACATGC 59.266 52.381 0.00 0.31 0.00 4.06
3197 12492 0.095935 CTGCTCTTGTACACATGCGC 59.904 55.000 0.00 0.00 33.88 6.09
3214 12513 0.674581 CGCTGTGCATTCCTTCTCCA 60.675 55.000 0.00 0.00 0.00 3.86
3215 12514 1.760192 GCTGTGCATTCCTTCTCCAT 58.240 50.000 0.00 0.00 0.00 3.41
3222 12521 2.100418 GCATTCCTTCTCCATTTCTGGC 59.900 50.000 0.00 0.00 42.80 4.85
3229 12528 0.807667 CTCCATTTCTGGCGTCCTCG 60.808 60.000 0.00 0.00 42.80 4.63
3236 12535 2.282958 TGGCGTCCTCGGTTCTCT 60.283 61.111 0.00 0.00 37.56 3.10
3237 12536 2.272918 CTGGCGTCCTCGGTTCTCTC 62.273 65.000 0.00 0.00 37.56 3.20
3238 12537 2.047443 GGCGTCCTCGGTTCTCTCT 61.047 63.158 0.00 0.00 37.56 3.10
3239 12538 1.596895 GGCGTCCTCGGTTCTCTCTT 61.597 60.000 0.00 0.00 37.56 2.85
3246 12545 2.422127 CCTCGGTTCTCTCTTCTCTGTC 59.578 54.545 0.00 0.00 0.00 3.51
3274 12573 1.340114 CCCTGCCAGAGTAAAGGGTTC 60.340 57.143 0.00 0.00 43.86 3.62
3275 12574 1.351017 CCTGCCAGAGTAAAGGGTTCA 59.649 52.381 0.00 0.00 0.00 3.18
3278 12577 2.708861 TGCCAGAGTAAAGGGTTCAAGA 59.291 45.455 0.00 0.00 0.00 3.02
3280 12579 4.202567 TGCCAGAGTAAAGGGTTCAAGAAT 60.203 41.667 0.00 0.00 0.00 2.40
3281 12580 4.396478 GCCAGAGTAAAGGGTTCAAGAATC 59.604 45.833 0.00 0.00 0.00 2.52
3286 12585 4.767409 AGTAAAGGGTTCAAGAATCCAAGC 59.233 41.667 14.17 2.27 44.04 4.01
3287 12586 3.532641 AAGGGTTCAAGAATCCAAGCT 57.467 42.857 14.17 0.00 44.04 3.74
3288 12587 2.800250 AGGGTTCAAGAATCCAAGCTG 58.200 47.619 14.17 0.00 44.04 4.24
3289 12588 2.108952 AGGGTTCAAGAATCCAAGCTGT 59.891 45.455 14.17 0.00 44.04 4.40
3290 12589 2.229784 GGGTTCAAGAATCCAAGCTGTG 59.770 50.000 7.22 0.00 41.25 3.66
3291 12590 3.149196 GGTTCAAGAATCCAAGCTGTGA 58.851 45.455 0.00 0.00 0.00 3.58
3292 12591 3.190118 GGTTCAAGAATCCAAGCTGTGAG 59.810 47.826 0.00 0.00 0.00 3.51
3293 12592 2.430465 TCAAGAATCCAAGCTGTGAGC 58.570 47.619 0.00 0.00 42.84 4.26
3318 12617 0.247736 ACCTTTACCTGCTCTGCTCG 59.752 55.000 0.00 0.00 0.00 5.03
3321 12620 2.417719 CTTTACCTGCTCTGCTCGTTT 58.582 47.619 0.00 0.00 0.00 3.60
3334 12633 1.264288 GCTCGTTTGTTTGTCCTCTGG 59.736 52.381 0.00 0.00 0.00 3.86
3363 12662 5.633830 ACGTTTCATTGCTGATCAAATCT 57.366 34.783 0.00 0.00 38.34 2.40
3370 12669 5.585047 TCATTGCTGATCAAATCTCACTCTG 59.415 40.000 0.00 0.00 38.34 3.35
3376 12675 4.774200 TGATCAAATCTCACTCTGAGTGGA 59.226 41.667 31.26 26.40 45.94 4.02
3383 12682 1.880675 TCACTCTGAGTGGAACGAGAC 59.119 52.381 31.26 0.00 45.94 3.36
3387 12686 0.962489 CTGAGTGGAACGAGACACCT 59.038 55.000 0.00 0.00 45.86 4.00
3403 12702 1.302285 CCTCTGCCAGCCTCACATT 59.698 57.895 0.00 0.00 0.00 2.71
3409 12708 1.210931 CCAGCCTCACATTGTTGCG 59.789 57.895 0.00 0.00 0.00 4.85
3428 12727 1.292223 GTGTGCTTACGCCTCTCCA 59.708 57.895 0.00 0.00 34.43 3.86
3442 12741 2.628178 CCTCTCCACTTCAGTACACACA 59.372 50.000 0.00 0.00 0.00 3.72
3443 12742 3.259374 CCTCTCCACTTCAGTACACACAT 59.741 47.826 0.00 0.00 0.00 3.21
3444 12743 4.462834 CCTCTCCACTTCAGTACACACATA 59.537 45.833 0.00 0.00 0.00 2.29
3445 12744 5.127845 CCTCTCCACTTCAGTACACACATAT 59.872 44.000 0.00 0.00 0.00 1.78
3446 12745 6.321435 CCTCTCCACTTCAGTACACACATATA 59.679 42.308 0.00 0.00 0.00 0.86
3447 12746 7.096884 TCTCCACTTCAGTACACACATATAC 57.903 40.000 0.00 0.00 0.00 1.47
3448 12747 6.661805 TCTCCACTTCAGTACACACATATACA 59.338 38.462 0.00 0.00 0.00 2.29
3449 12748 6.627243 TCCACTTCAGTACACACATATACAC 58.373 40.000 0.00 0.00 0.00 2.90
3450 12749 6.209788 TCCACTTCAGTACACACATATACACA 59.790 38.462 0.00 0.00 0.00 3.72
3505 12804 2.168728 AGATCTGAACTTCTTACCCCGC 59.831 50.000 0.00 0.00 0.00 6.13
3506 12805 1.344065 TCTGAACTTCTTACCCCGCA 58.656 50.000 0.00 0.00 0.00 5.69
3532 12831 5.750352 TCCGAAAATAGTAGAAGGTGGTT 57.250 39.130 0.00 0.00 0.00 3.67
3534 12833 4.094442 CCGAAAATAGTAGAAGGTGGTTGC 59.906 45.833 0.00 0.00 0.00 4.17
3568 12871 3.365767 GCTCTTGCTCTTGGATGAACAAC 60.366 47.826 0.00 0.00 36.03 3.32
3569 12872 3.817084 CTCTTGCTCTTGGATGAACAACA 59.183 43.478 0.00 0.00 0.00 3.33
3571 12874 3.213206 TGCTCTTGGATGAACAACACT 57.787 42.857 0.00 0.00 0.00 3.55
3582 12885 5.874810 GGATGAACAACACTGCTTAGATGTA 59.125 40.000 0.00 0.00 0.00 2.29
3585 12888 6.954944 TGAACAACACTGCTTAGATGTAAAC 58.045 36.000 0.00 0.00 0.00 2.01
3590 12893 6.969828 ACACTGCTTAGATGTAAACTTAGC 57.030 37.500 0.00 0.00 41.06 3.09
3631 12934 6.321181 GTGGATTAGAAGGCACCATTGAATTA 59.679 38.462 0.00 0.00 33.19 1.40
3647 12950 9.793252 CCATTGAATTAACTAGAACTGGAAATG 57.207 33.333 0.00 0.00 0.00 2.32
3652 12955 8.567285 AATTAACTAGAACTGGAAATGTGGAG 57.433 34.615 0.00 0.00 0.00 3.86
3656 12959 2.641815 AGAACTGGAAATGTGGAGCTCT 59.358 45.455 14.64 0.00 0.00 4.09
3686 12989 0.389025 GCAAGTGGTTGTCCCTTTGG 59.611 55.000 0.00 0.00 35.92 3.28
3697 13000 3.256704 TGTCCCTTTGGTAAGTGGAGAT 58.743 45.455 0.00 0.00 33.87 2.75
3706 13009 3.209410 GGTAAGTGGAGATGGCTTCATG 58.791 50.000 3.03 0.00 30.77 3.07
3707 13010 1.760192 AAGTGGAGATGGCTTCATGC 58.240 50.000 3.03 0.00 41.94 4.06
3717 13027 5.628130 AGATGGCTTCATGCTGTATGTTAT 58.372 37.500 5.64 0.00 42.39 1.89
3719 13029 3.809279 TGGCTTCATGCTGTATGTTATCG 59.191 43.478 5.64 0.00 42.39 2.92
3720 13030 4.058124 GGCTTCATGCTGTATGTTATCGA 58.942 43.478 5.64 0.00 42.39 3.59
3728 13038 6.778308 CATGCTGTATGTTATCGAAACTTCGG 60.778 42.308 11.64 7.63 40.18 4.30
3738 13048 7.699391 TGTTATCGAAACTTCGGTTACATAGAG 59.301 37.037 11.64 0.00 44.91 2.43
3753 13063 9.141400 GGTTACATAGAGAACTTTGTTCAGTAG 57.859 37.037 12.16 2.19 38.71 2.57
3754 13064 8.648968 GTTACATAGAGAACTTTGTTCAGTAGC 58.351 37.037 12.16 5.98 38.71 3.58
3755 13065 6.759272 ACATAGAGAACTTTGTTCAGTAGCA 58.241 36.000 12.16 0.00 35.43 3.49
3756 13066 7.390027 ACATAGAGAACTTTGTTCAGTAGCAT 58.610 34.615 12.16 0.00 35.43 3.79
3757 13067 8.531982 ACATAGAGAACTTTGTTCAGTAGCATA 58.468 33.333 12.16 0.00 35.43 3.14
3758 13068 9.029243 CATAGAGAACTTTGTTCAGTAGCATAG 57.971 37.037 12.16 0.00 0.00 2.23
3759 13069 5.872070 AGAGAACTTTGTTCAGTAGCATAGC 59.128 40.000 12.16 0.00 0.00 2.97
3760 13070 5.799213 AGAACTTTGTTCAGTAGCATAGCT 58.201 37.500 12.16 0.00 43.41 3.32
3761 13071 6.936279 AGAACTTTGTTCAGTAGCATAGCTA 58.064 36.000 12.16 0.00 40.44 3.32
3762 13072 7.038659 AGAACTTTGTTCAGTAGCATAGCTAG 58.961 38.462 12.16 0.00 42.11 3.42
3763 13073 5.112686 ACTTTGTTCAGTAGCATAGCTAGC 58.887 41.667 6.62 6.62 42.11 3.42
3764 13074 5.105146 ACTTTGTTCAGTAGCATAGCTAGCT 60.105 40.000 23.12 23.12 42.11 3.32
3765 13075 6.096987 ACTTTGTTCAGTAGCATAGCTAGCTA 59.903 38.462 26.09 26.09 42.11 3.32
3793 13103 6.500684 TTCAGCCAAATCACTCTTTGTATC 57.499 37.500 0.00 0.00 34.90 2.24
3794 13104 5.809001 TCAGCCAAATCACTCTTTGTATCT 58.191 37.500 0.00 0.00 34.90 1.98
3802 13112 5.405935 TCACTCTTTGTATCTAGCTTGCA 57.594 39.130 0.00 0.00 0.00 4.08
3809 13119 6.486657 TCTTTGTATCTAGCTTGCACAAGTTT 59.513 34.615 11.77 4.01 40.45 2.66
3822 13132 3.565063 GCACAAGTTTGGATTTTGCCAAT 59.435 39.130 0.00 0.00 46.59 3.16
3823 13133 4.319694 GCACAAGTTTGGATTTTGCCAATC 60.320 41.667 0.00 0.00 46.59 2.67
3830 13140 4.454728 TGGATTTTGCCAATCTTGTAGC 57.545 40.909 5.87 0.00 34.31 3.58
3834 13144 5.163478 GGATTTTGCCAATCTTGTAGCAGAT 60.163 40.000 5.87 0.00 36.44 2.90
3835 13145 5.726980 TTTTGCCAATCTTGTAGCAGATT 57.273 34.783 0.00 0.00 43.14 2.40
3871 13181 5.922544 ACTTCTGCACATCATTTAACTTTGC 59.077 36.000 0.00 0.00 0.00 3.68
3872 13182 5.710513 TCTGCACATCATTTAACTTTGCT 57.289 34.783 0.00 0.00 0.00 3.91
3891 13201 8.195436 ACTTTGCTCATGATTATCCAAGAAATG 58.805 33.333 0.00 0.00 0.00 2.32
3904 13214 6.500684 TCCAAGAAATGTTTCTCTATGTGC 57.499 37.500 8.34 0.00 46.22 4.57
3911 13221 8.887717 AGAAATGTTTCTCTATGTGCTGTTATC 58.112 33.333 2.25 0.00 43.72 1.75
3915 13225 6.813649 TGTTTCTCTATGTGCTGTTATCTGAC 59.186 38.462 0.00 0.00 0.00 3.51
3919 13229 6.317893 TCTCTATGTGCTGTTATCTGACGTTA 59.682 38.462 0.00 0.00 0.00 3.18
3924 13234 5.048573 TGTGCTGTTATCTGACGTTAGTGTA 60.049 40.000 7.27 0.00 0.00 2.90
3928 13238 6.187125 TGTTATCTGACGTTAGTGTAGGTC 57.813 41.667 7.27 0.00 34.41 3.85
3934 13244 3.066621 TGACGTTAGTGTAGGTCGTGTTT 59.933 43.478 0.00 0.00 36.09 2.83
3937 13247 4.275936 ACGTTAGTGTAGGTCGTGTTTAGT 59.724 41.667 0.00 0.00 33.55 2.24
3942 13252 6.147864 AGTGTAGGTCGTGTTTAGTTGTAA 57.852 37.500 0.00 0.00 0.00 2.41
3983 13293 5.810587 AGTAGTTCTACCATGTTTGCATACG 59.189 40.000 2.77 0.00 33.30 3.06
3984 13294 4.827692 AGTTCTACCATGTTTGCATACGA 58.172 39.130 2.77 0.00 33.30 3.43
3991 13301 4.277174 ACCATGTTTGCATACGAAGAAACA 59.723 37.500 2.77 0.00 41.27 2.83
3998 13308 4.119862 TGCATACGAAGAAACAGGATAGC 58.880 43.478 0.00 0.00 0.00 2.97
4002 13320 3.851098 ACGAAGAAACAGGATAGCAGAC 58.149 45.455 0.00 0.00 0.00 3.51
4004 13322 4.081420 ACGAAGAAACAGGATAGCAGACAT 60.081 41.667 0.00 0.00 0.00 3.06
4023 13341 4.759782 ACATGCTTCTATTGTCGCTAACT 58.240 39.130 0.00 0.00 0.00 2.24
4029 13347 6.426937 TGCTTCTATTGTCGCTAACTTTTTCT 59.573 34.615 0.00 0.00 0.00 2.52
4032 13350 9.141400 CTTCTATTGTCGCTAACTTTTTCTACT 57.859 33.333 0.00 0.00 0.00 2.57
4041 13359 8.440833 TCGCTAACTTTTTCTACTTAGCAATTC 58.559 33.333 8.53 0.00 40.70 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.386951 TGCCGTGGTCATGTCCGG 62.387 66.667 0.00 0.00 43.22 5.14
25 26 2.779951 TTCTGCCGTGGTCATGTCCG 62.780 60.000 4.48 0.00 0.00 4.79
26 27 1.003839 TTCTGCCGTGGTCATGTCC 60.004 57.895 1.55 1.55 0.00 4.02
27 28 1.298859 GGTTCTGCCGTGGTCATGTC 61.299 60.000 0.00 0.00 0.00 3.06
28 29 1.302511 GGTTCTGCCGTGGTCATGT 60.303 57.895 0.00 0.00 0.00 3.21
29 30 3.578456 GGTTCTGCCGTGGTCATG 58.422 61.111 0.00 0.00 0.00 3.07
38 39 4.443266 AGCTCGCTCGGTTCTGCC 62.443 66.667 0.00 0.00 0.00 4.85
39 40 2.883253 GAGCTCGCTCGGTTCTGC 60.883 66.667 0.00 0.00 33.06 4.26
40 41 2.202676 GGAGCTCGCTCGGTTCTG 60.203 66.667 7.83 0.00 43.59 3.02
41 42 3.816524 CGGAGCTCGCTCGGTTCT 61.817 66.667 15.72 0.00 43.59 3.01
42 43 4.856607 CCGGAGCTCGCTCGGTTC 62.857 72.222 18.50 4.74 43.59 3.62
45 46 3.471244 CTAACCGGAGCTCGCTCGG 62.471 68.421 23.25 23.25 43.59 4.63
46 47 1.787057 ATCTAACCGGAGCTCGCTCG 61.787 60.000 9.46 5.73 43.59 5.03
47 48 0.386113 AATCTAACCGGAGCTCGCTC 59.614 55.000 9.46 10.36 42.04 5.03
48 49 1.609555 CTAATCTAACCGGAGCTCGCT 59.390 52.381 9.46 0.00 37.59 4.93
49 50 1.336056 CCTAATCTAACCGGAGCTCGC 60.336 57.143 9.46 0.00 37.59 5.03
50 51 1.955080 ACCTAATCTAACCGGAGCTCG 59.045 52.381 9.46 3.03 38.88 5.03
51 52 4.142004 TGAAACCTAATCTAACCGGAGCTC 60.142 45.833 9.46 4.71 0.00 4.09
52 53 3.773119 TGAAACCTAATCTAACCGGAGCT 59.227 43.478 9.46 0.00 0.00 4.09
53 54 4.133013 TGAAACCTAATCTAACCGGAGC 57.867 45.455 9.46 0.00 0.00 4.70
54 55 5.671493 ACATGAAACCTAATCTAACCGGAG 58.329 41.667 9.46 0.00 0.00 4.63
55 56 5.687166 ACATGAAACCTAATCTAACCGGA 57.313 39.130 9.46 0.00 0.00 5.14
56 57 5.448632 GCAACATGAAACCTAATCTAACCGG 60.449 44.000 0.00 0.00 0.00 5.28
57 58 5.569413 GCAACATGAAACCTAATCTAACCG 58.431 41.667 0.00 0.00 0.00 4.44
58 59 5.123344 ACGCAACATGAAACCTAATCTAACC 59.877 40.000 0.00 0.00 0.00 2.85
59 60 6.021596 CACGCAACATGAAACCTAATCTAAC 58.978 40.000 0.00 0.00 0.00 2.34
60 61 5.703592 ACACGCAACATGAAACCTAATCTAA 59.296 36.000 0.00 0.00 0.00 2.10
61 62 5.242434 ACACGCAACATGAAACCTAATCTA 58.758 37.500 0.00 0.00 0.00 1.98
62 63 4.072131 ACACGCAACATGAAACCTAATCT 58.928 39.130 0.00 0.00 0.00 2.40
63 64 4.419522 ACACGCAACATGAAACCTAATC 57.580 40.909 0.00 0.00 0.00 1.75
64 65 5.950758 TTACACGCAACATGAAACCTAAT 57.049 34.783 0.00 0.00 0.00 1.73
65 66 5.950758 ATTACACGCAACATGAAACCTAA 57.049 34.783 0.00 0.00 0.00 2.69
66 67 7.618502 ATTATTACACGCAACATGAAACCTA 57.381 32.000 0.00 0.00 0.00 3.08
67 68 5.950758 TTATTACACGCAACATGAAACCT 57.049 34.783 0.00 0.00 0.00 3.50
68 69 8.126074 TCATATTATTACACGCAACATGAAACC 58.874 33.333 0.00 0.00 0.00 3.27
69 70 9.497030 TTCATATTATTACACGCAACATGAAAC 57.503 29.630 0.00 0.00 29.56 2.78
75 76 9.715123 CTCAAATTCATATTATTACACGCAACA 57.285 29.630 0.00 0.00 0.00 3.33
76 77 9.169468 CCTCAAATTCATATTATTACACGCAAC 57.831 33.333 0.00 0.00 0.00 4.17
77 78 8.898761 ACCTCAAATTCATATTATTACACGCAA 58.101 29.630 0.00 0.00 0.00 4.85
78 79 8.445275 ACCTCAAATTCATATTATTACACGCA 57.555 30.769 0.00 0.00 0.00 5.24
79 80 9.730420 AAACCTCAAATTCATATTATTACACGC 57.270 29.630 0.00 0.00 0.00 5.34
96 97 9.354673 AGACATCTCAAATTAGAAAACCTCAAA 57.645 29.630 0.00 0.00 0.00 2.69
97 98 8.786898 CAGACATCTCAAATTAGAAAACCTCAA 58.213 33.333 0.00 0.00 0.00 3.02
98 99 7.391554 CCAGACATCTCAAATTAGAAAACCTCA 59.608 37.037 0.00 0.00 0.00 3.86
99 100 7.391833 ACCAGACATCTCAAATTAGAAAACCTC 59.608 37.037 0.00 0.00 0.00 3.85
100 101 7.234355 ACCAGACATCTCAAATTAGAAAACCT 58.766 34.615 0.00 0.00 0.00 3.50
101 102 7.454260 ACCAGACATCTCAAATTAGAAAACC 57.546 36.000 0.00 0.00 0.00 3.27
102 103 8.352942 ACAACCAGACATCTCAAATTAGAAAAC 58.647 33.333 0.00 0.00 0.00 2.43
103 104 8.463930 ACAACCAGACATCTCAAATTAGAAAA 57.536 30.769 0.00 0.00 0.00 2.29
104 105 9.219603 CTACAACCAGACATCTCAAATTAGAAA 57.780 33.333 0.00 0.00 0.00 2.52
105 106 8.593679 TCTACAACCAGACATCTCAAATTAGAA 58.406 33.333 0.00 0.00 0.00 2.10
106 107 8.134202 TCTACAACCAGACATCTCAAATTAGA 57.866 34.615 0.00 0.00 0.00 2.10
107 108 8.777865 TTCTACAACCAGACATCTCAAATTAG 57.222 34.615 0.00 0.00 0.00 1.73
108 109 9.383519 GATTCTACAACCAGACATCTCAAATTA 57.616 33.333 0.00 0.00 0.00 1.40
109 110 7.884877 TGATTCTACAACCAGACATCTCAAATT 59.115 33.333 0.00 0.00 0.00 1.82
110 111 7.397221 TGATTCTACAACCAGACATCTCAAAT 58.603 34.615 0.00 0.00 0.00 2.32
111 112 6.768483 TGATTCTACAACCAGACATCTCAAA 58.232 36.000 0.00 0.00 0.00 2.69
112 113 6.358974 TGATTCTACAACCAGACATCTCAA 57.641 37.500 0.00 0.00 0.00 3.02
113 114 6.358974 TTGATTCTACAACCAGACATCTCA 57.641 37.500 0.00 0.00 0.00 3.27
114 115 7.856145 ATTTGATTCTACAACCAGACATCTC 57.144 36.000 0.00 0.00 0.00 2.75
115 116 9.911788 AATATTTGATTCTACAACCAGACATCT 57.088 29.630 0.00 0.00 0.00 2.90
118 119 9.513906 TCAAATATTTGATTCTACAACCAGACA 57.486 29.630 23.86 0.00 41.88 3.41
119 120 9.994432 CTCAAATATTTGATTCTACAACCAGAC 57.006 33.333 26.83 0.00 45.26 3.51
120 121 9.958180 TCTCAAATATTTGATTCTACAACCAGA 57.042 29.630 26.83 15.04 45.26 3.86
121 122 9.994432 GTCTCAAATATTTGATTCTACAACCAG 57.006 33.333 26.83 13.29 45.26 4.00
122 123 8.664798 CGTCTCAAATATTTGATTCTACAACCA 58.335 33.333 26.83 4.82 45.26 3.67
123 124 8.665685 ACGTCTCAAATATTTGATTCTACAACC 58.334 33.333 26.83 9.46 45.26 3.77
124 125 9.478019 CACGTCTCAAATATTTGATTCTACAAC 57.522 33.333 26.83 15.87 45.26 3.32
125 126 9.430623 TCACGTCTCAAATATTTGATTCTACAA 57.569 29.630 26.83 10.82 45.26 2.41
126 127 8.996024 TCACGTCTCAAATATTTGATTCTACA 57.004 30.769 26.83 10.84 45.26 2.74
127 128 9.690434 GTTCACGTCTCAAATATTTGATTCTAC 57.310 33.333 26.83 20.36 45.26 2.59
128 129 8.592155 CGTTCACGTCTCAAATATTTGATTCTA 58.408 33.333 26.83 12.94 39.26 2.10
129 130 7.413000 CCGTTCACGTCTCAAATATTTGATTCT 60.413 37.037 26.83 10.51 40.89 2.40
130 131 6.682863 CCGTTCACGTCTCAAATATTTGATTC 59.317 38.462 26.83 20.73 40.89 2.52
131 132 6.148811 ACCGTTCACGTCTCAAATATTTGATT 59.851 34.615 26.83 12.01 40.89 2.57
132 133 5.642063 ACCGTTCACGTCTCAAATATTTGAT 59.358 36.000 26.83 12.66 40.89 2.57
133 134 4.992319 ACCGTTCACGTCTCAAATATTTGA 59.008 37.500 25.44 25.44 40.14 2.69
134 135 5.107259 TGACCGTTCACGTCTCAAATATTTG 60.107 40.000 20.13 20.13 37.29 2.32
135 136 4.992319 TGACCGTTCACGTCTCAAATATTT 59.008 37.500 0.00 0.00 37.74 1.40
136 137 4.562082 TGACCGTTCACGTCTCAAATATT 58.438 39.130 0.00 0.00 37.74 1.28
137 138 4.174009 CTGACCGTTCACGTCTCAAATAT 58.826 43.478 0.00 0.00 37.74 1.28
138 139 3.005050 ACTGACCGTTCACGTCTCAAATA 59.995 43.478 0.00 0.00 37.74 1.40
139 140 2.223971 ACTGACCGTTCACGTCTCAAAT 60.224 45.455 0.00 0.00 37.74 2.32
140 141 1.135527 ACTGACCGTTCACGTCTCAAA 59.864 47.619 0.00 0.00 37.74 2.69
141 142 0.742505 ACTGACCGTTCACGTCTCAA 59.257 50.000 0.00 0.00 37.74 3.02
142 143 0.030235 CACTGACCGTTCACGTCTCA 59.970 55.000 0.00 0.00 37.74 3.27
143 144 0.030369 ACACTGACCGTTCACGTCTC 59.970 55.000 0.00 0.00 37.74 3.36
144 145 0.458669 AACACTGACCGTTCACGTCT 59.541 50.000 0.00 0.00 37.74 4.18
145 146 0.850856 GAACACTGACCGTTCACGTC 59.149 55.000 0.00 0.00 41.92 4.34
146 147 0.868602 CGAACACTGACCGTTCACGT 60.869 55.000 0.00 0.00 42.35 4.49
147 148 1.844003 CGAACACTGACCGTTCACG 59.156 57.895 0.00 0.00 42.35 4.35
148 149 1.563173 GCGAACACTGACCGTTCAC 59.437 57.895 0.00 0.00 42.35 3.18
149 150 1.947146 CGCGAACACTGACCGTTCA 60.947 57.895 0.00 0.00 42.35 3.18
150 151 2.654912 CCGCGAACACTGACCGTTC 61.655 63.158 8.23 0.00 39.50 3.95
151 152 2.660552 CCGCGAACACTGACCGTT 60.661 61.111 8.23 0.00 0.00 4.44
152 153 3.598715 TCCGCGAACACTGACCGT 61.599 61.111 8.23 0.00 0.00 4.83
153 154 3.103911 GTCCGCGAACACTGACCG 61.104 66.667 8.23 0.00 0.00 4.79
154 155 3.103911 CGTCCGCGAACACTGACC 61.104 66.667 8.23 0.00 41.33 4.02
155 156 3.764049 GCGTCCGCGAACACTGAC 61.764 66.667 8.23 3.97 41.33 3.51
180 181 3.845472 CTTAAACGCCCGCGGACG 61.845 66.667 32.50 32.50 44.69 4.79
181 182 3.493440 CCTTAAACGCCCGCGGAC 61.493 66.667 30.73 16.23 44.69 4.79
182 183 4.763646 CCCTTAAACGCCCGCGGA 62.764 66.667 30.73 0.90 44.69 5.54
183 184 4.763646 TCCCTTAAACGCCCGCGG 62.764 66.667 21.04 21.04 44.69 6.46
184 185 2.512974 ATCCCTTAAACGCCCGCG 60.513 61.111 7.69 7.69 46.03 6.46
185 186 2.531376 CGATCCCTTAAACGCCCGC 61.531 63.158 0.00 0.00 0.00 6.13
186 187 1.885850 CCGATCCCTTAAACGCCCG 60.886 63.158 0.00 0.00 0.00 6.13
187 188 0.108019 ATCCGATCCCTTAAACGCCC 59.892 55.000 0.00 0.00 0.00 6.13
188 189 1.963172 AATCCGATCCCTTAAACGCC 58.037 50.000 0.00 0.00 0.00 5.68
189 190 2.032924 CCAAATCCGATCCCTTAAACGC 59.967 50.000 0.00 0.00 0.00 4.84
190 191 3.275999 ACCAAATCCGATCCCTTAAACG 58.724 45.455 0.00 0.00 0.00 3.60
191 192 4.266714 TGACCAAATCCGATCCCTTAAAC 58.733 43.478 0.00 0.00 0.00 2.01
192 193 4.577988 TGACCAAATCCGATCCCTTAAA 57.422 40.909 0.00 0.00 0.00 1.52
193 194 4.714632 GATGACCAAATCCGATCCCTTAA 58.285 43.478 0.00 0.00 0.00 1.85
194 195 3.244078 CGATGACCAAATCCGATCCCTTA 60.244 47.826 0.00 0.00 0.00 2.69
195 196 2.485479 CGATGACCAAATCCGATCCCTT 60.485 50.000 0.00 0.00 0.00 3.95
196 197 1.070758 CGATGACCAAATCCGATCCCT 59.929 52.381 0.00 0.00 0.00 4.20
197 198 1.512926 CGATGACCAAATCCGATCCC 58.487 55.000 0.00 0.00 0.00 3.85
198 199 0.868406 GCGATGACCAAATCCGATCC 59.132 55.000 0.00 0.00 0.00 3.36
199 200 1.581934 TGCGATGACCAAATCCGATC 58.418 50.000 0.00 0.00 0.00 3.69
200 201 1.670811 GTTGCGATGACCAAATCCGAT 59.329 47.619 0.00 0.00 0.00 4.18
201 202 1.083489 GTTGCGATGACCAAATCCGA 58.917 50.000 0.00 0.00 0.00 4.55
202 203 1.086696 AGTTGCGATGACCAAATCCG 58.913 50.000 0.00 0.00 0.00 4.18
203 204 5.297547 TCTATAGTTGCGATGACCAAATCC 58.702 41.667 0.00 0.00 0.00 3.01
204 205 6.619446 GCATCTATAGTTGCGATGACCAAATC 60.619 42.308 17.66 0.00 37.35 2.17
205 206 5.180117 GCATCTATAGTTGCGATGACCAAAT 59.820 40.000 17.66 0.00 37.35 2.32
206 207 4.511454 GCATCTATAGTTGCGATGACCAAA 59.489 41.667 17.66 0.00 37.35 3.28
207 208 4.058124 GCATCTATAGTTGCGATGACCAA 58.942 43.478 17.66 0.00 37.35 3.67
208 209 3.321968 AGCATCTATAGTTGCGATGACCA 59.678 43.478 23.57 0.00 43.46 4.02
209 210 3.919216 AGCATCTATAGTTGCGATGACC 58.081 45.455 23.57 3.18 43.46 4.02
225 226 9.427127 GTTTCAAGATTAATTCGTTAGAGCATC 57.573 33.333 0.00 0.00 0.00 3.91
226 227 8.116753 CGTTTCAAGATTAATTCGTTAGAGCAT 58.883 33.333 0.00 0.00 0.00 3.79
227 228 7.329962 TCGTTTCAAGATTAATTCGTTAGAGCA 59.670 33.333 0.00 0.00 0.00 4.26
228 229 7.672738 TCGTTTCAAGATTAATTCGTTAGAGC 58.327 34.615 0.00 0.00 0.00 4.09
229 230 9.676899 CTTCGTTTCAAGATTAATTCGTTAGAG 57.323 33.333 0.00 0.00 0.00 2.43
230 231 8.653338 CCTTCGTTTCAAGATTAATTCGTTAGA 58.347 33.333 0.00 0.00 0.00 2.10
231 232 7.425595 GCCTTCGTTTCAAGATTAATTCGTTAG 59.574 37.037 0.00 0.00 0.00 2.34
232 233 7.238571 GCCTTCGTTTCAAGATTAATTCGTTA 58.761 34.615 0.00 0.00 0.00 3.18
233 234 6.084277 GCCTTCGTTTCAAGATTAATTCGTT 58.916 36.000 0.00 0.00 0.00 3.85
234 235 5.391629 GGCCTTCGTTTCAAGATTAATTCGT 60.392 40.000 0.00 0.00 0.00 3.85
235 236 5.028375 GGCCTTCGTTTCAAGATTAATTCG 58.972 41.667 0.00 0.00 0.00 3.34
236 237 5.125578 AGGGCCTTCGTTTCAAGATTAATTC 59.874 40.000 0.00 0.00 0.00 2.17
237 238 5.016831 AGGGCCTTCGTTTCAAGATTAATT 58.983 37.500 0.00 0.00 0.00 1.40
238 239 4.600062 AGGGCCTTCGTTTCAAGATTAAT 58.400 39.130 0.00 0.00 0.00 1.40
239 240 4.028993 AGGGCCTTCGTTTCAAGATTAA 57.971 40.909 0.00 0.00 0.00 1.40
240 241 3.713826 AGGGCCTTCGTTTCAAGATTA 57.286 42.857 0.00 0.00 0.00 1.75
241 242 2.586648 AGGGCCTTCGTTTCAAGATT 57.413 45.000 0.00 0.00 0.00 2.40
242 243 3.713826 TTAGGGCCTTCGTTTCAAGAT 57.286 42.857 13.45 0.00 0.00 2.40
243 244 3.495434 TTTAGGGCCTTCGTTTCAAGA 57.505 42.857 13.45 0.00 0.00 3.02
244 245 4.783764 AATTTAGGGCCTTCGTTTCAAG 57.216 40.909 13.45 0.00 0.00 3.02
245 246 5.946972 TCATAATTTAGGGCCTTCGTTTCAA 59.053 36.000 13.45 0.00 0.00 2.69
246 247 5.502079 TCATAATTTAGGGCCTTCGTTTCA 58.498 37.500 13.45 0.00 0.00 2.69
247 248 6.438763 CATCATAATTTAGGGCCTTCGTTTC 58.561 40.000 13.45 0.00 0.00 2.78
248 249 5.301805 CCATCATAATTTAGGGCCTTCGTTT 59.698 40.000 13.45 3.56 0.00 3.60
249 250 4.827284 CCATCATAATTTAGGGCCTTCGTT 59.173 41.667 13.45 6.80 0.00 3.85
250 251 4.104102 TCCATCATAATTTAGGGCCTTCGT 59.896 41.667 13.45 0.00 0.00 3.85
251 252 4.651778 TCCATCATAATTTAGGGCCTTCG 58.348 43.478 13.45 0.00 0.00 3.79
252 253 7.544804 AATTCCATCATAATTTAGGGCCTTC 57.455 36.000 13.45 0.00 0.00 3.46
253 254 8.870116 GTTAATTCCATCATAATTTAGGGCCTT 58.130 33.333 13.45 0.00 0.00 4.35
254 255 8.010105 TGTTAATTCCATCATAATTTAGGGCCT 58.990 33.333 12.58 12.58 0.00 5.19
255 256 8.088365 GTGTTAATTCCATCATAATTTAGGGCC 58.912 37.037 0.00 0.00 0.00 5.80
256 257 8.860088 AGTGTTAATTCCATCATAATTTAGGGC 58.140 33.333 0.00 0.00 0.00 5.19
261 262 9.807649 GCAGAAGTGTTAATTCCATCATAATTT 57.192 29.630 0.00 0.00 0.00 1.82
262 263 8.416329 GGCAGAAGTGTTAATTCCATCATAATT 58.584 33.333 0.00 0.00 0.00 1.40
263 264 7.781693 AGGCAGAAGTGTTAATTCCATCATAAT 59.218 33.333 0.00 0.00 0.00 1.28
264 265 7.118723 AGGCAGAAGTGTTAATTCCATCATAA 58.881 34.615 0.00 0.00 0.00 1.90
265 266 6.662755 AGGCAGAAGTGTTAATTCCATCATA 58.337 36.000 0.00 0.00 0.00 2.15
266 267 5.513233 AGGCAGAAGTGTTAATTCCATCAT 58.487 37.500 0.00 0.00 0.00 2.45
267 268 4.922206 AGGCAGAAGTGTTAATTCCATCA 58.078 39.130 0.00 0.00 0.00 3.07
268 269 4.034510 CGAGGCAGAAGTGTTAATTCCATC 59.965 45.833 0.00 0.00 0.00 3.51
269 270 3.941483 CGAGGCAGAAGTGTTAATTCCAT 59.059 43.478 0.00 0.00 0.00 3.41
270 271 3.334691 CGAGGCAGAAGTGTTAATTCCA 58.665 45.455 0.00 0.00 0.00 3.53
271 272 2.678336 CCGAGGCAGAAGTGTTAATTCC 59.322 50.000 0.00 0.00 0.00 3.01
272 273 3.335579 ACCGAGGCAGAAGTGTTAATTC 58.664 45.455 0.00 0.00 0.00 2.17
273 274 3.418684 ACCGAGGCAGAAGTGTTAATT 57.581 42.857 0.00 0.00 0.00 1.40
333 335 7.005709 AGCTAGTACAAATGAAACAGGTAGT 57.994 36.000 0.00 0.00 0.00 2.73
336 338 6.770785 TGAAAGCTAGTACAAATGAAACAGGT 59.229 34.615 0.00 0.00 0.00 4.00
349 351 5.120986 GCTTCCTTTCACTGAAAGCTAGTAC 59.879 44.000 21.67 8.24 45.19 2.73
350 352 5.221641 TGCTTCCTTTCACTGAAAGCTAGTA 60.222 40.000 21.67 16.85 45.19 1.82
351 353 4.068599 GCTTCCTTTCACTGAAAGCTAGT 58.931 43.478 21.67 0.00 45.19 2.57
352 354 4.067896 TGCTTCCTTTCACTGAAAGCTAG 58.932 43.478 21.67 19.62 45.19 3.42
356 358 6.429385 ACTTCTATGCTTCCTTTCACTGAAAG 59.571 38.462 20.55 20.55 45.86 2.62
389 391 2.471103 CCGTTTGTGTATTCGTACGCAC 60.471 50.000 11.24 13.19 39.80 5.34
469 941 4.609018 CGGCGGCGGATGGAGAAT 62.609 66.667 25.36 0.00 0.00 2.40
1055 1629 1.159664 AGGCCTGTCCTGAGGAAGT 59.840 57.895 3.11 0.00 45.54 3.01
1213 1787 7.686438 TGCTATTTTCACATAAGCTCTTCAA 57.314 32.000 0.00 0.00 0.00 2.69
1275 1849 0.624500 AGCAGGCATCTCCCCCTTTA 60.625 55.000 0.00 0.00 34.51 1.85
1281 1855 1.145819 GACAGAGCAGGCATCTCCC 59.854 63.158 0.00 0.00 34.51 4.30
1286 1860 1.460504 CACATTGACAGAGCAGGCAT 58.539 50.000 0.00 0.00 0.00 4.40
1297 1871 4.495679 CGTGTTATATGCCACCACATTGAC 60.496 45.833 0.00 0.00 0.00 3.18
1410 1985 7.318909 GCATGAATAATCGAGTTAAATGTCACG 59.681 37.037 0.00 0.00 0.00 4.35
1418 1993 6.458206 GCACAAGGCATGAATAATCGAGTTAA 60.458 38.462 0.00 0.00 43.97 2.01
1437 2012 1.457823 TTGCTCTGGCCTTGCACAAG 61.458 55.000 15.34 3.32 36.37 3.16
1513 2088 8.102800 TGGATCATGCAATTATATGTCACTTC 57.897 34.615 0.00 0.00 0.00 3.01
1548 2123 4.195416 CCTCTCTTAACTGCCCTGATTTC 58.805 47.826 0.00 0.00 0.00 2.17
1550 2125 2.507471 CCCTCTCTTAACTGCCCTGATT 59.493 50.000 0.00 0.00 0.00 2.57
1563 2138 5.721960 TCTGAGCATTTTAGTACCCTCTCTT 59.278 40.000 0.00 0.00 0.00 2.85
1565 2140 5.599999 TCTGAGCATTTTAGTACCCTCTC 57.400 43.478 0.00 0.00 0.00 3.20
1571 2146 9.677567 TTGTCATTTTTCTGAGCATTTTAGTAC 57.322 29.630 0.00 0.00 0.00 2.73
1573 2148 7.653311 GGTTGTCATTTTTCTGAGCATTTTAGT 59.347 33.333 0.00 0.00 0.00 2.24
1582 2157 2.228822 CCCGGGTTGTCATTTTTCTGAG 59.771 50.000 14.18 0.00 0.00 3.35
1880 2458 5.926542 TCGGTAAATATGAGCATAGCTTCAC 59.073 40.000 0.00 0.00 39.88 3.18
2056 2634 5.991933 TGCATACAAAAGCCCTGAATTAA 57.008 34.783 0.00 0.00 0.00 1.40
2221 2800 6.069963 GGTCTCCCATCTATGCTTATAACCAT 60.070 42.308 0.00 0.00 0.00 3.55
2244 2823 6.372659 GTGAACTGAATGTAATGACATCAGGT 59.627 38.462 18.95 15.37 45.93 4.00
2576 3155 8.451908 ACAAAGACCTCCAAGTATTATATTGC 57.548 34.615 0.00 0.00 0.00 3.56
2661 3240 9.410556 GCATTGAGTGTTATAATGTTGAACTTT 57.589 29.630 0.00 0.00 34.98 2.66
2686 3265 5.235616 CCTTGAACATTGCATTAATCATGGC 59.764 40.000 10.16 0.00 32.81 4.40
2840 9831 8.180267 CACTCTTCTCCATTGATGAAAACATAC 58.820 37.037 0.00 0.00 0.00 2.39
2897 9888 9.695526 CTTTTTCCAACAACATTCTGATGATAA 57.304 29.630 0.00 0.00 36.73 1.75
2971 9962 4.754114 AGTTGAAGCTTCAAGTGAGATGAC 59.246 41.667 37.02 24.83 46.80 3.06
3066 10057 8.810427 CAACCAAATCCATCGAAAAATTGATAG 58.190 33.333 0.00 0.00 0.00 2.08
3129 10120 9.435688 ACTTATTGAAAGCAAAAAGTTCAACTT 57.564 25.926 0.00 0.00 42.36 2.66
3138 10129 5.222079 GGGGGACTTATTGAAAGCAAAAA 57.778 39.130 0.00 0.00 37.59 1.94
3159 12436 1.893801 AGGACAGACTCGTTAACAGGG 59.106 52.381 6.39 1.19 0.00 4.45
3164 12441 2.515854 AGAGCAGGACAGACTCGTTAA 58.484 47.619 0.00 0.00 35.56 2.01
3165 12442 2.201921 AGAGCAGGACAGACTCGTTA 57.798 50.000 0.00 0.00 35.56 3.18
3166 12443 1.000283 CAAGAGCAGGACAGACTCGTT 60.000 52.381 0.00 0.00 35.56 3.85
3171 12466 2.035961 TGTGTACAAGAGCAGGACAGAC 59.964 50.000 0.00 0.00 0.00 3.51
3174 12469 2.871637 GCATGTGTACAAGAGCAGGACA 60.872 50.000 0.00 0.00 0.00 4.02
3175 12470 1.734465 GCATGTGTACAAGAGCAGGAC 59.266 52.381 0.00 0.00 0.00 3.85
3195 12490 0.674581 TGGAGAAGGAATGCACAGCG 60.675 55.000 0.00 0.00 0.00 5.18
3197 12492 4.015084 AGAAATGGAGAAGGAATGCACAG 58.985 43.478 0.00 0.00 0.00 3.66
3209 12504 0.537188 GAGGACGCCAGAAATGGAGA 59.463 55.000 4.98 0.00 32.87 3.71
3210 12505 0.807667 CGAGGACGCCAGAAATGGAG 60.808 60.000 0.00 0.00 34.81 3.86
3214 12513 0.391263 GAACCGAGGACGCCAGAAAT 60.391 55.000 0.00 0.00 38.29 2.17
3215 12514 1.005394 GAACCGAGGACGCCAGAAA 60.005 57.895 0.00 0.00 38.29 2.52
3222 12521 1.399089 GAGAAGAGAGAACCGAGGACG 59.601 57.143 0.00 0.00 39.43 4.79
3229 12528 1.816224 AGCGACAGAGAAGAGAGAACC 59.184 52.381 0.00 0.00 0.00 3.62
3236 12535 0.811915 GGCAGTAGCGACAGAGAAGA 59.188 55.000 0.00 0.00 43.41 2.87
3237 12536 0.179124 GGGCAGTAGCGACAGAGAAG 60.179 60.000 0.00 0.00 43.41 2.85
3238 12537 0.612174 AGGGCAGTAGCGACAGAGAA 60.612 55.000 0.00 0.00 43.41 2.87
3239 12538 1.000771 AGGGCAGTAGCGACAGAGA 60.001 57.895 0.00 0.00 43.41 3.10
3246 12545 3.729965 CTCTGGCAGGGCAGTAGCG 62.730 68.421 20.41 6.35 43.41 4.26
3274 12573 1.471684 GGCTCACAGCTTGGATTCTTG 59.528 52.381 0.00 0.00 41.99 3.02
3275 12574 1.353694 AGGCTCACAGCTTGGATTCTT 59.646 47.619 0.00 0.00 41.99 2.52
3278 12577 3.261250 CAGGCTCACAGCTTGGATT 57.739 52.632 0.00 0.00 43.62 3.01
3286 12585 2.417719 GTAAAGGTCACAGGCTCACAG 58.582 52.381 0.00 0.00 0.00 3.66
3287 12586 1.071699 GGTAAAGGTCACAGGCTCACA 59.928 52.381 0.00 0.00 0.00 3.58
3288 12587 1.348036 AGGTAAAGGTCACAGGCTCAC 59.652 52.381 0.00 0.00 0.00 3.51
3289 12588 1.347707 CAGGTAAAGGTCACAGGCTCA 59.652 52.381 0.00 0.00 0.00 4.26
3290 12589 1.946283 GCAGGTAAAGGTCACAGGCTC 60.946 57.143 0.00 0.00 0.00 4.70
3291 12590 0.036875 GCAGGTAAAGGTCACAGGCT 59.963 55.000 0.00 0.00 0.00 4.58
3292 12591 0.036875 AGCAGGTAAAGGTCACAGGC 59.963 55.000 0.00 0.00 0.00 4.85
3293 12592 1.625818 AGAGCAGGTAAAGGTCACAGG 59.374 52.381 0.00 0.00 36.03 4.00
3318 12617 2.024414 AGCACCAGAGGACAAACAAAC 58.976 47.619 0.00 0.00 0.00 2.93
3321 12620 0.836606 TGAGCACCAGAGGACAAACA 59.163 50.000 0.00 0.00 0.00 2.83
3334 12633 2.046313 CAGCAATGAAACGTTGAGCAC 58.954 47.619 0.00 0.00 0.00 4.40
3370 12669 1.068194 CAGAGGTGTCTCGTTCCACTC 60.068 57.143 0.00 0.00 44.47 3.51
3376 12675 1.668294 CTGGCAGAGGTGTCTCGTT 59.332 57.895 9.42 0.00 44.47 3.85
3383 12682 2.046507 GTGAGGCTGGCAGAGGTG 60.047 66.667 20.86 0.00 0.00 4.00
3387 12686 0.111061 AACAATGTGAGGCTGGCAGA 59.889 50.000 20.86 0.00 0.00 4.26
3403 12702 3.325072 CGTAAGCACACCGCAACA 58.675 55.556 0.00 0.00 46.13 3.33
3421 12720 2.628178 TGTGTGTACTGAAGTGGAGAGG 59.372 50.000 0.00 0.00 0.00 3.69
3428 12727 8.311109 TCATTGTGTATATGTGTGTACTGAAGT 58.689 33.333 0.00 0.00 0.00 3.01
3442 12741 6.382087 TCCAGGTAGTCCTCATTGTGTATAT 58.618 40.000 0.00 0.00 43.07 0.86
3443 12742 5.773091 TCCAGGTAGTCCTCATTGTGTATA 58.227 41.667 0.00 0.00 43.07 1.47
3444 12743 4.620723 TCCAGGTAGTCCTCATTGTGTAT 58.379 43.478 0.00 0.00 43.07 2.29
3445 12744 4.023980 CTCCAGGTAGTCCTCATTGTGTA 58.976 47.826 0.00 0.00 43.07 2.90
3446 12745 2.834549 CTCCAGGTAGTCCTCATTGTGT 59.165 50.000 0.00 0.00 43.07 3.72
3447 12746 2.834549 ACTCCAGGTAGTCCTCATTGTG 59.165 50.000 0.00 0.00 43.07 3.33
3448 12747 2.834549 CACTCCAGGTAGTCCTCATTGT 59.165 50.000 0.00 0.00 43.07 2.71
3449 12748 2.834549 ACACTCCAGGTAGTCCTCATTG 59.165 50.000 0.00 0.00 43.07 2.82
3450 12749 3.100671 GACACTCCAGGTAGTCCTCATT 58.899 50.000 0.00 0.00 43.07 2.57
3496 12795 0.391927 TTCGGATTGTGCGGGGTAAG 60.392 55.000 0.00 0.00 0.00 2.34
3502 12801 4.116961 TCTACTATTTTCGGATTGTGCGG 58.883 43.478 0.00 0.00 0.00 5.69
3505 12804 6.037172 CCACCTTCTACTATTTTCGGATTGTG 59.963 42.308 0.00 0.00 0.00 3.33
3506 12805 6.113411 CCACCTTCTACTATTTTCGGATTGT 58.887 40.000 0.00 0.00 0.00 2.71
3532 12831 3.743017 GAGCATGGGAAGGGGGCA 61.743 66.667 0.00 0.00 0.00 5.36
3534 12833 1.076485 CAAGAGCATGGGAAGGGGG 60.076 63.158 0.00 0.00 0.00 5.40
3568 12871 7.038659 AGAGCTAAGTTTACATCTAAGCAGTG 58.961 38.462 0.00 0.00 0.00 3.66
3569 12872 7.176589 AGAGCTAAGTTTACATCTAAGCAGT 57.823 36.000 0.00 0.00 0.00 4.40
3571 12874 9.587772 CTTAAGAGCTAAGTTTACATCTAAGCA 57.412 33.333 0.00 0.00 33.52 3.91
3582 12885 7.391833 CACCTCAATTCCTTAAGAGCTAAGTTT 59.608 37.037 3.36 0.00 36.06 2.66
3585 12888 5.819901 CCACCTCAATTCCTTAAGAGCTAAG 59.180 44.000 3.36 0.00 37.36 2.18
3590 12893 7.796054 TCTAATCCACCTCAATTCCTTAAGAG 58.204 38.462 3.36 0.00 0.00 2.85
3631 12934 4.042187 AGCTCCACATTTCCAGTTCTAGTT 59.958 41.667 0.00 0.00 0.00 2.24
3647 12950 2.615869 CAGCTACTTCAAGAGCTCCAC 58.384 52.381 10.93 0.00 46.08 4.02
3652 12955 2.159234 CACTTGCAGCTACTTCAAGAGC 59.841 50.000 18.15 0.00 39.48 4.09
3656 12959 2.618241 CAACCACTTGCAGCTACTTCAA 59.382 45.455 0.00 0.00 0.00 2.69
3670 12973 2.512476 ACTTACCAAAGGGACAACCACT 59.488 45.455 0.00 0.00 43.89 4.00
3686 12989 2.615912 GCATGAAGCCATCTCCACTTAC 59.384 50.000 0.00 0.00 37.23 2.34
3719 13029 7.886405 AAGTTCTCTATGTAACCGAAGTTTC 57.114 36.000 0.00 0.00 37.42 2.78
3720 13030 7.713942 ACAAAGTTCTCTATGTAACCGAAGTTT 59.286 33.333 0.00 0.00 37.42 2.66
3728 13038 8.648968 GCTACTGAACAAAGTTCTCTATGTAAC 58.351 37.037 10.79 0.00 0.00 2.50
3735 13045 5.872070 GCTATGCTACTGAACAAAGTTCTCT 59.128 40.000 10.79 0.00 0.00 3.10
3738 13048 6.237969 GCTAGCTATGCTACTGAACAAAGTTC 60.238 42.308 7.70 3.05 40.44 3.01
3759 13069 4.577693 TGATTTGGCTGAATGCTTAGCTAG 59.422 41.667 5.60 0.19 42.39 3.42
3760 13070 4.336433 GTGATTTGGCTGAATGCTTAGCTA 59.664 41.667 5.60 0.00 42.39 3.32
3761 13071 3.129988 GTGATTTGGCTGAATGCTTAGCT 59.870 43.478 5.60 0.00 42.39 3.32
3762 13072 3.129988 AGTGATTTGGCTGAATGCTTAGC 59.870 43.478 0.00 0.00 42.39 3.09
3763 13073 4.639310 AGAGTGATTTGGCTGAATGCTTAG 59.361 41.667 0.00 0.00 42.39 2.18
3764 13074 4.592942 AGAGTGATTTGGCTGAATGCTTA 58.407 39.130 0.00 0.00 42.39 3.09
3765 13075 3.428532 AGAGTGATTTGGCTGAATGCTT 58.571 40.909 0.00 0.00 42.39 3.91
3781 13091 4.931601 TGTGCAAGCTAGATACAAAGAGTG 59.068 41.667 0.00 0.00 0.00 3.51
3783 13093 5.641209 ACTTGTGCAAGCTAGATACAAAGAG 59.359 40.000 11.43 0.00 41.99 2.85
3793 13103 4.510038 AATCCAAACTTGTGCAAGCTAG 57.490 40.909 11.43 2.36 41.99 3.42
3794 13104 4.935352 AAATCCAAACTTGTGCAAGCTA 57.065 36.364 11.43 0.00 41.99 3.32
3809 13119 3.831333 TGCTACAAGATTGGCAAAATCCA 59.169 39.130 3.01 0.00 0.00 3.41
3845 13155 7.042523 GCAAAGTTAAATGATGTGCAGAAGTTT 60.043 33.333 0.00 0.00 0.00 2.66
3846 13156 6.421801 GCAAAGTTAAATGATGTGCAGAAGTT 59.578 34.615 0.00 0.00 0.00 2.66
3871 13181 9.947669 GAGAAACATTTCTTGGATAATCATGAG 57.052 33.333 8.24 0.00 46.84 2.90
3872 13182 9.690913 AGAGAAACATTTCTTGGATAATCATGA 57.309 29.630 8.24 0.00 46.84 3.07
3891 13201 6.020281 CGTCAGATAACAGCACATAGAGAAAC 60.020 42.308 0.00 0.00 0.00 2.78
3904 13214 6.192234 ACCTACACTAACGTCAGATAACAG 57.808 41.667 0.00 0.00 0.00 3.16
3911 13221 2.225019 ACACGACCTACACTAACGTCAG 59.775 50.000 0.00 0.00 35.05 3.51
3915 13225 4.787598 ACTAAACACGACCTACACTAACG 58.212 43.478 0.00 0.00 0.00 3.18
3919 13229 4.660789 ACAACTAAACACGACCTACACT 57.339 40.909 0.00 0.00 0.00 3.55
3924 13234 4.332428 AGCTTACAACTAAACACGACCT 57.668 40.909 0.00 0.00 0.00 3.85
3928 13238 6.655062 TCAATGAAGCTTACAACTAAACACG 58.345 36.000 0.00 0.00 0.00 4.49
3934 13244 6.995686 TCCTGTTTCAATGAAGCTTACAACTA 59.004 34.615 10.96 0.00 0.00 2.24
3937 13247 5.827797 ACTCCTGTTTCAATGAAGCTTACAA 59.172 36.000 10.96 0.00 0.00 2.41
3942 13252 5.234466 ACTACTCCTGTTTCAATGAAGCT 57.766 39.130 10.96 0.00 0.00 3.74
3983 13293 4.034975 GCATGTCTGCTATCCTGTTTCTTC 59.965 45.833 0.00 0.00 45.32 2.87
3984 13294 3.944015 GCATGTCTGCTATCCTGTTTCTT 59.056 43.478 0.00 0.00 45.32 2.52
3998 13308 3.193263 AGCGACAATAGAAGCATGTCTG 58.807 45.455 0.00 0.00 40.95 3.51
4002 13320 5.725110 AAGTTAGCGACAATAGAAGCATG 57.275 39.130 0.00 0.00 0.00 4.06
4004 13322 6.426937 AGAAAAAGTTAGCGACAATAGAAGCA 59.573 34.615 0.00 0.00 0.00 3.91
4006 13324 9.141400 AGTAGAAAAAGTTAGCGACAATAGAAG 57.859 33.333 0.00 0.00 0.00 2.85
4011 13329 7.740246 GCTAAGTAGAAAAAGTTAGCGACAAT 58.260 34.615 7.47 0.00 44.29 2.71
4029 13347 9.613428 AGCATTAGTACAATGAATTGCTAAGTA 57.387 29.630 17.05 0.00 41.38 2.24
4058 13376 3.758554 ACGCCTCTGAAATTGTAGCAAAT 59.241 39.130 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.