Multiple sequence alignment - TraesCS1D01G057500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G057500 chr1D 100.000 2429 0 0 1 2429 37886828 37889256 0.000000e+00 4486.0
1 TraesCS1D01G057500 chr1D 92.105 152 9 3 1966 2115 470744065 470744215 6.800000e-51 211.0
2 TraesCS1D01G057500 chr1D 93.056 144 9 1 1966 2108 204434925 204435068 2.450000e-50 209.0
3 TraesCS1D01G057500 chr1B 92.685 998 58 13 910 1899 57705786 57706776 0.000000e+00 1424.0
4 TraesCS1D01G057500 chr1B 89.065 759 41 14 689 1430 57682328 57683061 0.000000e+00 904.0
5 TraesCS1D01G057500 chr1B 89.655 725 38 17 710 1430 57629560 57630251 0.000000e+00 889.0
6 TraesCS1D01G057500 chr1B 91.598 607 44 7 1 601 68246996 68246391 0.000000e+00 832.0
7 TraesCS1D01G057500 chr1B 91.556 604 47 2 1 601 460271214 460270612 0.000000e+00 830.0
8 TraesCS1D01G057500 chr1B 86.080 704 42 28 737 1430 57643400 57644057 0.000000e+00 706.0
9 TraesCS1D01G057500 chr1B 87.934 605 59 10 1 601 625910786 625911380 0.000000e+00 701.0
10 TraesCS1D01G057500 chr1B 85.047 535 32 13 900 1430 57686337 57686827 3.610000e-138 501.0
11 TraesCS1D01G057500 chr1B 93.046 302 18 3 2118 2419 57706833 57707131 2.870000e-119 438.0
12 TraesCS1D01G057500 chr1B 86.885 183 19 3 106 287 600886173 600885995 1.470000e-47 200.0
13 TraesCS1D01G057500 chr1A 90.284 916 56 19 737 1637 36823644 36824541 0.000000e+00 1168.0
14 TraesCS1D01G057500 chr1A 92.384 604 43 2 1 601 57961454 57960851 0.000000e+00 857.0
15 TraesCS1D01G057500 chr1A 86.569 752 49 21 704 1430 36793957 36794681 0.000000e+00 782.0
16 TraesCS1D01G057500 chr1A 92.015 263 20 1 1629 1890 36825649 36825911 3.820000e-98 368.0
17 TraesCS1D01G057500 chr1A 82.857 175 27 2 106 277 536437437 536437611 1.160000e-33 154.0
18 TraesCS1D01G057500 chr1A 90.805 87 4 3 2333 2419 36826057 36826139 1.970000e-21 113.0
19 TraesCS1D01G057500 chr1A 93.056 72 0 2 602 668 36793886 36793957 1.540000e-17 100.0
20 TraesCS1D01G057500 chr5A 94.527 603 30 3 1 601 271054615 271055216 0.000000e+00 928.0
21 TraesCS1D01G057500 chr4B 91.626 609 46 5 1 605 612490830 612491437 0.000000e+00 837.0
22 TraesCS1D01G057500 chr3D 90.822 523 35 4 1 521 382755428 382755939 0.000000e+00 688.0
23 TraesCS1D01G057500 chr3D 87.255 408 46 6 197 601 360589621 360589217 6.120000e-126 460.0
24 TraesCS1D01G057500 chr3D 92.517 147 10 1 1965 2110 158082102 158081956 2.450000e-50 209.0
25 TraesCS1D01G057500 chr5D 90.526 285 24 3 320 601 264490710 264490994 8.200000e-100 374.0
26 TraesCS1D01G057500 chr5D 92.361 144 10 1 1966 2108 422025122 422025265 1.140000e-48 204.0
27 TraesCS1D01G057500 chr5B 92.617 149 10 1 1966 2113 626164873 626165021 1.890000e-51 213.0
28 TraesCS1D01G057500 chr5B 91.946 149 11 1 1966 2113 631572294 631572442 8.800000e-50 207.0
29 TraesCS1D01G057500 chr5B 98.039 51 1 0 1924 1974 333464005 333463955 3.330000e-14 89.8
30 TraesCS1D01G057500 chr5B 94.643 56 1 2 1920 1974 626164780 626164834 4.300000e-13 86.1
31 TraesCS1D01G057500 chr7B 93.056 144 9 1 1966 2108 185298175 185298318 2.450000e-50 209.0
32 TraesCS1D01G057500 chr7B 91.667 60 3 2 1916 1974 485276981 485277039 5.570000e-12 82.4
33 TraesCS1D01G057500 chr6D 92.000 150 11 1 1966 2114 309809113 309809262 2.450000e-50 209.0
34 TraesCS1D01G057500 chr6D 98.039 51 1 0 1924 1974 382159990 382159940 3.330000e-14 89.8
35 TraesCS1D01G057500 chr3A 93.056 144 9 1 1966 2108 639664438 639664295 2.450000e-50 209.0
36 TraesCS1D01G057500 chr7D 96.296 54 2 0 1921 1974 294569632 294569685 3.330000e-14 89.8
37 TraesCS1D01G057500 chr7D 93.103 58 2 2 1918 1974 196901068 196901124 1.550000e-12 84.2
38 TraesCS1D01G057500 chr6B 96.364 55 0 2 1921 1974 363754110 363754057 3.330000e-14 89.8
39 TraesCS1D01G057500 chr4D 94.737 57 1 2 1919 1974 16087680 16087625 1.200000e-13 87.9
40 TraesCS1D01G057500 chr2D 92.982 57 4 0 1918 1974 408522528 408522584 1.550000e-12 84.2
41 TraesCS1D01G057500 chr2B 96.970 33 0 1 4 35 94091886 94091854 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G057500 chr1D 37886828 37889256 2428 False 4486.000000 4486 100.000000 1 2429 1 chr1D.!!$F1 2428
1 TraesCS1D01G057500 chr1B 57705786 57707131 1345 False 931.000000 1424 92.865500 910 2419 2 chr1B.!!$F5 1509
2 TraesCS1D01G057500 chr1B 57629560 57630251 691 False 889.000000 889 89.655000 710 1430 1 chr1B.!!$F1 720
3 TraesCS1D01G057500 chr1B 68246391 68246996 605 True 832.000000 832 91.598000 1 601 1 chr1B.!!$R1 600
4 TraesCS1D01G057500 chr1B 460270612 460271214 602 True 830.000000 830 91.556000 1 601 1 chr1B.!!$R2 600
5 TraesCS1D01G057500 chr1B 57643400 57644057 657 False 706.000000 706 86.080000 737 1430 1 chr1B.!!$F2 693
6 TraesCS1D01G057500 chr1B 57682328 57686827 4499 False 702.500000 904 87.056000 689 1430 2 chr1B.!!$F4 741
7 TraesCS1D01G057500 chr1B 625910786 625911380 594 False 701.000000 701 87.934000 1 601 1 chr1B.!!$F3 600
8 TraesCS1D01G057500 chr1A 57960851 57961454 603 True 857.000000 857 92.384000 1 601 1 chr1A.!!$R1 600
9 TraesCS1D01G057500 chr1A 36823644 36826139 2495 False 549.666667 1168 91.034667 737 2419 3 chr1A.!!$F3 1682
10 TraesCS1D01G057500 chr1A 36793886 36794681 795 False 441.000000 782 89.812500 602 1430 2 chr1A.!!$F2 828
11 TraesCS1D01G057500 chr5A 271054615 271055216 601 False 928.000000 928 94.527000 1 601 1 chr5A.!!$F1 600
12 TraesCS1D01G057500 chr4B 612490830 612491437 607 False 837.000000 837 91.626000 1 605 1 chr4B.!!$F1 604
13 TraesCS1D01G057500 chr3D 382755428 382755939 511 False 688.000000 688 90.822000 1 521 1 chr3D.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 804 0.320247 CGCAGTCAGTCTCAAAGCCT 60.32 55.0 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 6937 0.033366 GCCACAATCCAAACACACCC 59.967 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.969976 TGACTAGCTCCTGCCATTAATCT 59.030 43.478 0.00 0.00 40.80 2.40
76 77 4.722193 CCAACTCAATGGCGAGGT 57.278 55.556 0.00 0.00 37.34 3.85
154 155 2.273179 TACTGGACTGCTTCGCCGT 61.273 57.895 0.00 0.00 0.00 5.68
241 248 1.220477 GAGAGGAAGGCTCTGGTGC 59.780 63.158 0.00 0.00 0.00 5.01
279 286 2.992114 AGGCTCAGCGACCTCGTT 60.992 61.111 0.00 0.00 42.22 3.85
386 393 2.627699 GAGGTGTTTGAGGAAATGCCAA 59.372 45.455 0.00 0.00 40.02 4.52
414 426 1.061735 GGGAGGAGGAGGAGGAAGAAT 60.062 57.143 0.00 0.00 0.00 2.40
418 430 5.461317 GGGAGGAGGAGGAGGAAGAATATTA 60.461 48.000 0.00 0.00 0.00 0.98
581 593 1.795962 CGGTTTCGCGAATTGTGGC 60.796 57.895 24.05 8.66 0.00 5.01
667 688 2.628178 TGTGAGTACAAGGAGTGTGGAG 59.372 50.000 0.00 0.00 41.89 3.86
668 689 2.628657 GTGAGTACAAGGAGTGTGGAGT 59.371 50.000 0.00 0.00 41.89 3.85
669 690 3.825014 GTGAGTACAAGGAGTGTGGAGTA 59.175 47.826 0.00 0.00 41.89 2.59
670 691 3.825014 TGAGTACAAGGAGTGTGGAGTAC 59.175 47.826 0.00 0.00 41.89 2.73
671 692 4.080687 GAGTACAAGGAGTGTGGAGTACT 58.919 47.826 0.00 0.00 43.26 2.73
672 693 4.080687 AGTACAAGGAGTGTGGAGTACTC 58.919 47.826 14.87 14.87 41.89 2.59
673 694 3.246416 ACAAGGAGTGTGGAGTACTCT 57.754 47.619 21.88 1.82 43.15 3.24
674 695 4.383931 ACAAGGAGTGTGGAGTACTCTA 57.616 45.455 21.88 14.08 43.15 2.43
675 696 4.080687 ACAAGGAGTGTGGAGTACTCTAC 58.919 47.826 27.38 27.38 43.15 2.59
676 697 4.202588 ACAAGGAGTGTGGAGTACTCTACT 60.203 45.833 31.66 25.61 44.06 2.57
677 698 5.013913 ACAAGGAGTGTGGAGTACTCTACTA 59.986 44.000 31.66 19.41 41.95 1.82
678 699 5.362105 AGGAGTGTGGAGTACTCTACTAG 57.638 47.826 31.66 0.00 41.20 2.57
679 700 4.784300 AGGAGTGTGGAGTACTCTACTAGT 59.216 45.833 31.66 22.53 41.20 2.57
680 701 5.963253 AGGAGTGTGGAGTACTCTACTAGTA 59.037 44.000 31.66 15.00 41.20 1.82
692 713 4.332268 ACTCTACTAGTACGTTGCTAGTGC 59.668 45.833 27.95 0.00 45.92 4.40
778 804 0.320247 CGCAGTCAGTCTCAAAGCCT 60.320 55.000 0.00 0.00 0.00 4.58
911 973 5.860941 AGCTATATATACGGATTGCAGCT 57.139 39.130 0.00 0.00 32.23 4.24
1017 1088 7.696872 GCTTATAATATGACGCAGAAGATCGTA 59.303 37.037 0.00 0.00 39.22 3.43
1297 1383 1.523711 TACTCCTACCCGTACGGCG 60.524 63.158 29.15 22.69 40.95 6.46
1358 1447 2.177594 GAGCAGCAGCACTACCCTGT 62.178 60.000 3.17 0.00 45.49 4.00
1362 1451 2.335712 GCAGCACTACCCTGTTGCC 61.336 63.158 0.00 0.00 41.22 4.52
1432 5287 5.405571 GGCACATGTTCGGTAATGTAGATAG 59.594 44.000 0.00 0.00 35.28 2.08
1630 5488 3.128349 GTTTCTAACAAGCAGACCGTCA 58.872 45.455 0.40 0.00 0.00 4.35
1655 6629 0.680061 ACAAGTCCGGTCTCCACTTC 59.320 55.000 0.00 0.00 0.00 3.01
1664 6638 0.033504 GTCTCCACTTCGCAGTCCAA 59.966 55.000 0.00 0.00 0.00 3.53
1676 6650 2.549754 CGCAGTCCAACAAAATCTGTCT 59.450 45.455 0.00 0.00 37.23 3.41
1771 6745 0.457851 GAGATCTCGGGTGGTGTCTG 59.542 60.000 7.04 0.00 0.00 3.51
1772 6746 1.153549 GATCTCGGGTGGTGTCTGC 60.154 63.158 0.00 0.00 0.00 4.26
1781 6756 1.023513 GTGGTGTCTGCTCTGATGGC 61.024 60.000 0.00 0.00 0.00 4.40
1855 6831 1.048601 TCCAGTGCGTTCTCCTTTCT 58.951 50.000 0.00 0.00 0.00 2.52
1863 6839 3.135994 GCGTTCTCCTTTCTTGTGGTAA 58.864 45.455 0.00 0.00 0.00 2.85
1905 6919 3.788227 ACCCAGTGCTAGATGTTTGAA 57.212 42.857 0.00 0.00 0.00 2.69
1913 6927 5.186409 AGTGCTAGATGTTTGAAATTGGCAT 59.814 36.000 0.00 0.00 0.00 4.40
1920 6934 7.899973 AGATGTTTGAAATTGGCATAGACTTT 58.100 30.769 0.00 0.00 0.00 2.66
1921 6935 8.370182 AGATGTTTGAAATTGGCATAGACTTTT 58.630 29.630 0.00 0.00 0.00 2.27
1922 6936 9.638239 GATGTTTGAAATTGGCATAGACTTTTA 57.362 29.630 0.00 0.00 0.00 1.52
1923 6937 9.643693 ATGTTTGAAATTGGCATAGACTTTTAG 57.356 29.630 0.00 0.00 0.00 1.85
1924 6938 8.087750 TGTTTGAAATTGGCATAGACTTTTAGG 58.912 33.333 0.00 0.00 0.00 2.69
1925 6939 6.773976 TGAAATTGGCATAGACTTTTAGGG 57.226 37.500 0.00 0.00 0.00 3.53
1926 6940 6.252995 TGAAATTGGCATAGACTTTTAGGGT 58.747 36.000 0.00 0.00 0.00 4.34
1927 6941 6.152661 TGAAATTGGCATAGACTTTTAGGGTG 59.847 38.462 0.00 0.00 0.00 4.61
1928 6942 4.650972 TTGGCATAGACTTTTAGGGTGT 57.349 40.909 0.00 0.00 0.00 4.16
1929 6943 3.950397 TGGCATAGACTTTTAGGGTGTG 58.050 45.455 0.00 0.00 0.00 3.82
1930 6944 3.329520 TGGCATAGACTTTTAGGGTGTGT 59.670 43.478 0.00 0.00 0.00 3.72
1931 6945 4.202524 TGGCATAGACTTTTAGGGTGTGTT 60.203 41.667 0.00 0.00 0.00 3.32
1932 6946 4.765339 GGCATAGACTTTTAGGGTGTGTTT 59.235 41.667 0.00 0.00 0.00 2.83
1933 6947 5.335661 GGCATAGACTTTTAGGGTGTGTTTG 60.336 44.000 0.00 0.00 0.00 2.93
1934 6948 5.335661 GCATAGACTTTTAGGGTGTGTTTGG 60.336 44.000 0.00 0.00 0.00 3.28
1935 6949 4.513406 AGACTTTTAGGGTGTGTTTGGA 57.487 40.909 0.00 0.00 0.00 3.53
1936 6950 5.061721 AGACTTTTAGGGTGTGTTTGGAT 57.938 39.130 0.00 0.00 0.00 3.41
1937 6951 5.454966 AGACTTTTAGGGTGTGTTTGGATT 58.545 37.500 0.00 0.00 0.00 3.01
1938 6952 5.301805 AGACTTTTAGGGTGTGTTTGGATTG 59.698 40.000 0.00 0.00 0.00 2.67
1939 6953 4.959839 ACTTTTAGGGTGTGTTTGGATTGT 59.040 37.500 0.00 0.00 0.00 2.71
1940 6954 4.927978 TTTAGGGTGTGTTTGGATTGTG 57.072 40.909 0.00 0.00 0.00 3.33
1941 6955 1.703411 AGGGTGTGTTTGGATTGTGG 58.297 50.000 0.00 0.00 0.00 4.17
1942 6956 0.033366 GGGTGTGTTTGGATTGTGGC 59.967 55.000 0.00 0.00 0.00 5.01
1943 6957 0.033366 GGTGTGTTTGGATTGTGGCC 59.967 55.000 0.00 0.00 0.00 5.36
1944 6958 0.749649 GTGTGTTTGGATTGTGGCCA 59.250 50.000 0.00 0.00 0.00 5.36
1945 6959 1.137872 GTGTGTTTGGATTGTGGCCAA 59.862 47.619 7.24 0.00 43.31 4.52
1950 6964 0.392336 TTGGATTGTGGCCAAAGTGC 59.608 50.000 7.24 4.53 42.13 4.40
1951 6965 0.758310 TGGATTGTGGCCAAAGTGCA 60.758 50.000 7.24 8.09 33.44 4.57
1952 6966 0.319813 GGATTGTGGCCAAAGTGCAC 60.320 55.000 7.24 9.40 33.44 4.57
1953 6967 0.319813 GATTGTGGCCAAAGTGCACC 60.320 55.000 14.63 0.00 33.44 5.01
1954 6968 0.760189 ATTGTGGCCAAAGTGCACCT 60.760 50.000 14.63 0.00 33.44 4.00
1955 6969 0.975040 TTGTGGCCAAAGTGCACCTT 60.975 50.000 14.63 3.43 33.79 3.50
1956 6970 0.106469 TGTGGCCAAAGTGCACCTTA 60.106 50.000 14.63 0.00 31.48 2.69
1957 6971 0.313987 GTGGCCAAAGTGCACCTTAC 59.686 55.000 14.63 2.47 31.48 2.34
1958 6972 0.825840 TGGCCAAAGTGCACCTTACC 60.826 55.000 14.63 12.36 31.48 2.85
1959 6973 0.825840 GGCCAAAGTGCACCTTACCA 60.826 55.000 14.63 0.00 31.48 3.25
1960 6974 1.036707 GCCAAAGTGCACCTTACCAA 58.963 50.000 14.63 0.00 31.48 3.67
1961 6975 1.410882 GCCAAAGTGCACCTTACCAAA 59.589 47.619 14.63 0.00 31.48 3.28
1962 6976 2.159028 GCCAAAGTGCACCTTACCAAAA 60.159 45.455 14.63 0.00 31.48 2.44
1963 6977 3.680196 GCCAAAGTGCACCTTACCAAAAA 60.680 43.478 14.63 0.00 31.48 1.94
1984 6998 6.790285 AAAATTTGGCATGTCTGTGAATTC 57.210 33.333 0.00 0.00 0.00 2.17
1985 6999 5.733620 AATTTGGCATGTCTGTGAATTCT 57.266 34.783 7.05 0.00 0.00 2.40
1986 7000 6.839124 AATTTGGCATGTCTGTGAATTCTA 57.161 33.333 7.05 0.00 0.00 2.10
1987 7001 5.885230 TTTGGCATGTCTGTGAATTCTAG 57.115 39.130 7.05 5.57 0.00 2.43
1988 7002 3.273434 TGGCATGTCTGTGAATTCTAGC 58.727 45.455 7.05 0.00 0.00 3.42
1989 7003 2.615912 GGCATGTCTGTGAATTCTAGCC 59.384 50.000 7.05 4.95 0.00 3.93
1990 7004 3.273434 GCATGTCTGTGAATTCTAGCCA 58.727 45.455 7.05 2.02 0.00 4.75
1991 7005 3.691118 GCATGTCTGTGAATTCTAGCCAA 59.309 43.478 7.05 0.00 0.00 4.52
1992 7006 4.437930 GCATGTCTGTGAATTCTAGCCAAC 60.438 45.833 7.05 0.00 0.00 3.77
1993 7007 4.623932 TGTCTGTGAATTCTAGCCAACT 57.376 40.909 7.05 0.00 0.00 3.16
1994 7008 4.569943 TGTCTGTGAATTCTAGCCAACTC 58.430 43.478 7.05 0.00 0.00 3.01
1995 7009 4.284490 TGTCTGTGAATTCTAGCCAACTCT 59.716 41.667 7.05 0.00 0.00 3.24
1996 7010 5.480422 TGTCTGTGAATTCTAGCCAACTCTA 59.520 40.000 7.05 0.00 0.00 2.43
1997 7011 6.039616 GTCTGTGAATTCTAGCCAACTCTAG 58.960 44.000 7.05 0.00 37.87 2.43
1998 7012 5.717178 TCTGTGAATTCTAGCCAACTCTAGT 59.283 40.000 7.05 0.00 37.78 2.57
1999 7013 6.211584 TCTGTGAATTCTAGCCAACTCTAGTT 59.788 38.462 7.05 0.00 37.78 2.24
2000 7014 6.398918 TGTGAATTCTAGCCAACTCTAGTTC 58.601 40.000 7.05 0.00 37.78 3.01
2001 7015 6.014584 TGTGAATTCTAGCCAACTCTAGTTCA 60.015 38.462 7.05 0.00 37.78 3.18
2002 7016 7.044798 GTGAATTCTAGCCAACTCTAGTTCAT 58.955 38.462 7.05 0.00 35.74 2.57
2003 7017 7.550906 GTGAATTCTAGCCAACTCTAGTTCATT 59.449 37.037 7.05 2.18 35.74 2.57
2004 7018 8.103305 TGAATTCTAGCCAACTCTAGTTCATTT 58.897 33.333 7.05 0.00 37.78 2.32
2005 7019 8.870075 AATTCTAGCCAACTCTAGTTCATTTT 57.130 30.769 0.00 0.00 37.78 1.82
2006 7020 8.870075 ATTCTAGCCAACTCTAGTTCATTTTT 57.130 30.769 0.00 0.00 37.78 1.94
2050 7064 3.545366 GGCAACCAAAACCTTAACCAA 57.455 42.857 0.00 0.00 0.00 3.67
2051 7065 3.875125 GGCAACCAAAACCTTAACCAAA 58.125 40.909 0.00 0.00 0.00 3.28
2052 7066 4.262617 GGCAACCAAAACCTTAACCAAAA 58.737 39.130 0.00 0.00 0.00 2.44
2053 7067 4.884744 GGCAACCAAAACCTTAACCAAAAT 59.115 37.500 0.00 0.00 0.00 1.82
2054 7068 5.358442 GGCAACCAAAACCTTAACCAAAATT 59.642 36.000 0.00 0.00 0.00 1.82
2055 7069 6.127591 GGCAACCAAAACCTTAACCAAAATTT 60.128 34.615 0.00 0.00 0.00 1.82
2056 7070 7.316640 GCAACCAAAACCTTAACCAAAATTTT 58.683 30.769 0.00 0.00 0.00 1.82
2057 7071 7.274468 GCAACCAAAACCTTAACCAAAATTTTG 59.726 33.333 21.65 21.65 35.21 2.44
2080 7094 2.664398 CCAATGCTTTGGTGGGGC 59.336 61.111 20.54 0.00 46.27 5.80
2081 7095 2.215625 CCAATGCTTTGGTGGGGCA 61.216 57.895 20.54 0.00 46.27 5.36
2082 7096 1.753470 CAATGCTTTGGTGGGGCAA 59.247 52.632 4.44 0.00 39.46 4.52
2083 7097 0.603439 CAATGCTTTGGTGGGGCAAC 60.603 55.000 4.44 0.00 39.46 4.17
2095 7109 3.225235 GGCAACCTTGGGCACAAA 58.775 55.556 1.48 0.00 35.89 2.83
2096 7110 1.227527 GGCAACCTTGGGCACAAAC 60.228 57.895 1.48 0.00 35.89 2.93
2097 7111 1.227527 GCAACCTTGGGCACAAACC 60.228 57.895 1.48 0.00 35.89 3.27
2098 7112 1.965754 GCAACCTTGGGCACAAACCA 61.966 55.000 1.48 0.00 35.89 3.67
2099 7113 0.539051 CAACCTTGGGCACAAACCAA 59.461 50.000 1.48 0.00 45.25 3.67
2100 7114 1.065854 CAACCTTGGGCACAAACCAAA 60.066 47.619 1.48 0.00 46.54 3.28
2101 7115 0.539518 ACCTTGGGCACAAACCAAAC 59.460 50.000 1.48 0.00 46.54 2.93
2102 7116 0.539051 CCTTGGGCACAAACCAAACA 59.461 50.000 1.48 0.00 46.54 2.83
2103 7117 1.650825 CTTGGGCACAAACCAAACAC 58.349 50.000 1.48 0.00 46.54 3.32
2104 7118 0.976641 TTGGGCACAAACCAAACACA 59.023 45.000 0.00 0.00 44.52 3.72
2105 7119 0.247736 TGGGCACAAACCAAACACAC 59.752 50.000 0.00 0.00 34.44 3.82
2106 7120 0.461163 GGGCACAAACCAAACACACC 60.461 55.000 0.00 0.00 0.00 4.16
2107 7121 0.461163 GGCACAAACCAAACACACCC 60.461 55.000 0.00 0.00 0.00 4.61
2134 7148 4.525912 ACCAATTTCAGATGTTTCAGCC 57.474 40.909 0.00 0.00 0.00 4.85
2153 7167 0.735978 CGCCAAGCTCACACGTCATA 60.736 55.000 0.00 0.00 0.00 2.15
2181 7195 0.250901 AGGATGGTTCACAGGTGTGC 60.251 55.000 5.17 0.00 45.25 4.57
2255 7269 0.107945 AGGATGCTTCGAACCTGCTC 60.108 55.000 4.35 2.62 0.00 4.26
2268 7282 2.295885 ACCTGCTCTGCAAGAATATGC 58.704 47.619 0.00 0.00 46.34 3.14
2288 7302 0.894835 TTGCATGTCTCGTGCTCCTA 59.105 50.000 13.73 0.00 45.53 2.94
2294 7308 4.240888 CATGTCTCGTGCTCCTATTATGG 58.759 47.826 0.00 0.00 0.00 2.74
2311 7325 2.831685 TGGTCACACCACACTACATC 57.168 50.000 0.00 0.00 44.79 3.06
2317 7331 3.895041 TCACACCACACTACATCTCTTGA 59.105 43.478 0.00 0.00 0.00 3.02
2329 7343 3.937706 ACATCTCTTGACTTGTAGCATGC 59.062 43.478 10.51 10.51 0.00 4.06
2374 7388 1.299089 GGGCAAGCGTTTCACACAC 60.299 57.895 0.00 0.00 0.00 3.82
2406 7420 1.137872 AGAGAATAGCCAAGCACGAGG 59.862 52.381 0.00 0.00 0.00 4.63
2419 7433 0.247736 CACGAGGGCTCTGCTTAGTT 59.752 55.000 0.00 0.00 0.00 2.24
2420 7434 0.247736 ACGAGGGCTCTGCTTAGTTG 59.752 55.000 0.00 0.00 0.00 3.16
2421 7435 1.086634 CGAGGGCTCTGCTTAGTTGC 61.087 60.000 0.00 0.00 0.00 4.17
2422 7436 0.036010 GAGGGCTCTGCTTAGTTGCA 60.036 55.000 0.00 0.00 41.05 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.434188 TGGCCTCTCTCCTTTTCACA 58.566 50.000 3.32 0.00 0.00 3.58
76 77 1.927608 CTCTCTCAGACTCGCCGCAA 61.928 60.000 0.00 0.00 0.00 4.85
363 370 2.029918 GGCATTTCCTCAAACACCTCAC 60.030 50.000 0.00 0.00 0.00 3.51
386 393 0.933700 CCTCCTCCTCCCTCTCTCTT 59.066 60.000 0.00 0.00 0.00 2.85
414 426 2.422803 GGCCCACCTGTCAGCATTAATA 60.423 50.000 0.00 0.00 0.00 0.98
418 430 2.036256 GGCCCACCTGTCAGCATT 59.964 61.111 0.00 0.00 0.00 3.56
667 688 6.509358 GCACTAGCAACGTACTAGTAGAGTAC 60.509 46.154 23.39 5.03 46.68 2.73
668 689 5.521735 GCACTAGCAACGTACTAGTAGAGTA 59.478 44.000 23.39 0.00 46.68 2.59
669 690 4.332268 GCACTAGCAACGTACTAGTAGAGT 59.668 45.833 23.39 4.01 46.68 3.24
670 691 4.260702 GGCACTAGCAACGTACTAGTAGAG 60.261 50.000 23.39 15.72 46.68 2.43
671 692 3.624861 GGCACTAGCAACGTACTAGTAGA 59.375 47.826 23.39 0.00 46.68 2.59
672 693 3.243002 GGGCACTAGCAACGTACTAGTAG 60.243 52.174 23.39 19.06 46.68 2.57
673 694 2.684881 GGGCACTAGCAACGTACTAGTA 59.315 50.000 23.39 0.00 46.68 1.82
675 696 1.749634 AGGGCACTAGCAACGTACTAG 59.250 52.381 19.00 19.00 44.61 2.57
676 697 1.475280 CAGGGCACTAGCAACGTACTA 59.525 52.381 0.00 0.00 44.61 1.82
677 698 0.246635 CAGGGCACTAGCAACGTACT 59.753 55.000 0.00 0.00 44.61 2.73
678 699 0.739813 CCAGGGCACTAGCAACGTAC 60.740 60.000 0.00 0.00 44.61 3.67
679 700 1.594833 CCAGGGCACTAGCAACGTA 59.405 57.895 0.00 0.00 44.61 3.57
680 701 2.347490 CCAGGGCACTAGCAACGT 59.653 61.111 0.00 0.00 44.61 3.99
681 702 3.127533 GCCAGGGCACTAGCAACG 61.128 66.667 0.00 0.00 44.61 4.10
778 804 6.424883 TGTTTTGTTTAGGACTTGGGTCTTA 58.575 36.000 0.00 0.00 41.82 2.10
911 973 1.227943 AGAGTGCCTTCGCTGCAAA 60.228 52.632 0.00 0.00 41.06 3.68
996 1067 6.741358 CGATTACGATCTTCTGCGTCATATTA 59.259 38.462 0.00 0.00 41.49 0.98
1017 1088 3.204827 GCCATCTGCACCGCGATT 61.205 61.111 8.23 0.00 40.77 3.34
1297 1383 1.535437 CGGTTGCGATGGGTAGTAGTC 60.535 57.143 0.00 0.00 0.00 2.59
1432 5287 2.889512 ACCAACAAATTCCTCCTTCCC 58.110 47.619 0.00 0.00 0.00 3.97
1630 5488 0.247736 GAGACCGGACTTGTCATGCT 59.752 55.000 9.46 0.00 35.15 3.79
1655 6629 2.549754 AGACAGATTTTGTTGGACTGCG 59.450 45.455 0.00 0.00 41.05 5.18
1664 6638 1.298859 GGGCGCGAGACAGATTTTGT 61.299 55.000 12.10 0.00 45.40 2.83
1769 6743 0.035725 TGTTGGAGCCATCAGAGCAG 60.036 55.000 0.00 0.00 0.00 4.24
1771 6745 1.538047 TTTGTTGGAGCCATCAGAGC 58.462 50.000 1.04 0.00 0.00 4.09
1772 6746 3.377485 CAGATTTGTTGGAGCCATCAGAG 59.623 47.826 1.04 0.00 0.00 3.35
1781 6756 3.349927 TGCAGGATCAGATTTGTTGGAG 58.650 45.455 0.00 0.00 0.00 3.86
1855 6831 4.349636 TGGAGGACTTTCATCTTACCACAA 59.650 41.667 0.00 0.00 0.00 3.33
1863 6839 2.348472 TGGGTTGGAGGACTTTCATCT 58.652 47.619 0.00 0.00 0.00 2.90
1905 6919 5.418840 CACACCCTAAAAGTCTATGCCAATT 59.581 40.000 0.00 0.00 0.00 2.32
1913 6927 5.633655 TCCAAACACACCCTAAAAGTCTA 57.366 39.130 0.00 0.00 0.00 2.59
1920 6934 3.226777 CCACAATCCAAACACACCCTAA 58.773 45.455 0.00 0.00 0.00 2.69
1921 6935 2.870175 CCACAATCCAAACACACCCTA 58.130 47.619 0.00 0.00 0.00 3.53
1922 6936 1.703411 CCACAATCCAAACACACCCT 58.297 50.000 0.00 0.00 0.00 4.34
1923 6937 0.033366 GCCACAATCCAAACACACCC 59.967 55.000 0.00 0.00 0.00 4.61
1924 6938 0.033366 GGCCACAATCCAAACACACC 59.967 55.000 0.00 0.00 0.00 4.16
1925 6939 0.749649 TGGCCACAATCCAAACACAC 59.250 50.000 0.00 0.00 0.00 3.82
1926 6940 1.489481 TTGGCCACAATCCAAACACA 58.511 45.000 3.88 0.00 40.35 3.72
1927 6941 2.158971 ACTTTGGCCACAATCCAAACAC 60.159 45.455 3.88 0.00 45.60 3.32
1928 6942 2.114616 ACTTTGGCCACAATCCAAACA 58.885 42.857 3.88 0.00 45.60 2.83
1929 6943 2.482864 CACTTTGGCCACAATCCAAAC 58.517 47.619 3.88 0.00 45.60 2.93
1931 6945 0.392336 GCACTTTGGCCACAATCCAA 59.608 50.000 3.88 0.00 41.47 3.53
1932 6946 0.758310 TGCACTTTGGCCACAATCCA 60.758 50.000 3.88 0.00 36.29 3.41
1933 6947 0.319813 GTGCACTTTGGCCACAATCC 60.320 55.000 3.88 0.00 36.29 3.01
1934 6948 0.319813 GGTGCACTTTGGCCACAATC 60.320 55.000 17.98 0.00 36.29 2.67
1935 6949 0.760189 AGGTGCACTTTGGCCACAAT 60.760 50.000 17.98 0.00 36.29 2.71
1936 6950 0.975040 AAGGTGCACTTTGGCCACAA 60.975 50.000 17.98 2.15 35.35 3.33
1937 6951 0.106469 TAAGGTGCACTTTGGCCACA 60.106 50.000 23.17 0.00 40.64 4.17
1938 6952 0.313987 GTAAGGTGCACTTTGGCCAC 59.686 55.000 23.17 10.19 40.64 5.01
1939 6953 0.825840 GGTAAGGTGCACTTTGGCCA 60.826 55.000 23.17 0.00 40.64 5.36
1940 6954 0.825840 TGGTAAGGTGCACTTTGGCC 60.826 55.000 23.17 22.35 40.64 5.36
1941 6955 1.036707 TTGGTAAGGTGCACTTTGGC 58.963 50.000 23.17 15.15 40.64 4.52
1942 6956 3.810310 TTTTGGTAAGGTGCACTTTGG 57.190 42.857 23.17 0.00 40.64 3.28
1960 6974 6.993902 AGAATTCACAGACATGCCAAATTTTT 59.006 30.769 8.44 0.00 0.00 1.94
1961 6975 6.527423 AGAATTCACAGACATGCCAAATTTT 58.473 32.000 8.44 0.00 0.00 1.82
1962 6976 6.105397 AGAATTCACAGACATGCCAAATTT 57.895 33.333 8.44 0.00 0.00 1.82
1963 6977 5.733620 AGAATTCACAGACATGCCAAATT 57.266 34.783 8.44 0.00 0.00 1.82
1964 6978 5.163581 GCTAGAATTCACAGACATGCCAAAT 60.164 40.000 8.44 0.00 0.00 2.32
1965 6979 4.156556 GCTAGAATTCACAGACATGCCAAA 59.843 41.667 8.44 0.00 0.00 3.28
1966 6980 3.691118 GCTAGAATTCACAGACATGCCAA 59.309 43.478 8.44 0.00 0.00 4.52
1967 6981 3.273434 GCTAGAATTCACAGACATGCCA 58.727 45.455 8.44 0.00 0.00 4.92
1968 6982 2.615912 GGCTAGAATTCACAGACATGCC 59.384 50.000 8.44 5.45 0.00 4.40
1969 6983 3.273434 TGGCTAGAATTCACAGACATGC 58.727 45.455 10.69 2.27 0.00 4.06
1970 6984 4.940046 AGTTGGCTAGAATTCACAGACATG 59.060 41.667 14.42 0.00 0.00 3.21
1971 6985 5.046014 AGAGTTGGCTAGAATTCACAGACAT 60.046 40.000 14.42 3.33 0.00 3.06
1972 6986 4.284490 AGAGTTGGCTAGAATTCACAGACA 59.716 41.667 10.69 10.69 0.00 3.41
1973 6987 4.826556 AGAGTTGGCTAGAATTCACAGAC 58.173 43.478 8.44 7.09 0.00 3.51
1974 6988 5.717178 ACTAGAGTTGGCTAGAATTCACAGA 59.283 40.000 8.44 0.00 40.20 3.41
1975 6989 5.971763 ACTAGAGTTGGCTAGAATTCACAG 58.028 41.667 8.44 5.51 40.20 3.66
1976 6990 6.014584 TGAACTAGAGTTGGCTAGAATTCACA 60.015 38.462 8.44 0.00 40.20 3.58
1977 6991 6.398918 TGAACTAGAGTTGGCTAGAATTCAC 58.601 40.000 8.44 0.00 40.20 3.18
1978 6992 6.605471 TGAACTAGAGTTGGCTAGAATTCA 57.395 37.500 8.44 0.00 40.20 2.57
1979 6993 8.499403 AAATGAACTAGAGTTGGCTAGAATTC 57.501 34.615 0.00 0.00 40.20 2.17
1980 6994 8.870075 AAAATGAACTAGAGTTGGCTAGAATT 57.130 30.769 0.00 0.00 40.20 2.17
1981 6995 8.870075 AAAAATGAACTAGAGTTGGCTAGAAT 57.130 30.769 0.00 0.00 40.20 2.40
2006 7020 6.485984 CCCATGATTTGGTCAACATTGAAAAA 59.514 34.615 0.00 1.67 44.83 1.94
2007 7021 5.996513 CCCATGATTTGGTCAACATTGAAAA 59.003 36.000 0.00 0.00 44.83 2.29
2008 7022 5.549347 CCCATGATTTGGTCAACATTGAAA 58.451 37.500 0.00 0.00 44.83 2.69
2009 7023 4.563168 GCCCATGATTTGGTCAACATTGAA 60.563 41.667 0.00 0.00 44.83 2.69
2010 7024 3.055963 GCCCATGATTTGGTCAACATTGA 60.056 43.478 0.00 0.00 44.83 2.57
2011 7025 3.264104 GCCCATGATTTGGTCAACATTG 58.736 45.455 0.00 0.00 44.83 2.82
2012 7026 2.905085 TGCCCATGATTTGGTCAACATT 59.095 40.909 0.00 0.00 44.83 2.71
2013 7027 2.538222 TGCCCATGATTTGGTCAACAT 58.462 42.857 0.00 0.00 44.83 2.71
2014 7028 2.006805 TGCCCATGATTTGGTCAACA 57.993 45.000 0.00 0.00 44.83 3.33
2016 7030 1.622811 GGTTGCCCATGATTTGGTCAA 59.377 47.619 0.00 0.00 40.95 3.18
2017 7031 1.265236 GGTTGCCCATGATTTGGTCA 58.735 50.000 0.00 0.00 44.83 4.02
2018 7032 1.265236 TGGTTGCCCATGATTTGGTC 58.735 50.000 0.00 0.00 44.83 4.02
2019 7033 1.727062 TTGGTTGCCCATGATTTGGT 58.273 45.000 0.00 0.00 44.83 3.67
2020 7034 2.813172 GTTTTGGTTGCCCATGATTTGG 59.187 45.455 0.00 0.00 46.00 3.28
2021 7035 2.813172 GGTTTTGGTTGCCCATGATTTG 59.187 45.455 0.00 0.00 41.49 2.32
2022 7036 2.710471 AGGTTTTGGTTGCCCATGATTT 59.290 40.909 0.00 0.00 41.49 2.17
2023 7037 2.337849 AGGTTTTGGTTGCCCATGATT 58.662 42.857 0.00 0.00 41.49 2.57
2024 7038 2.028561 AGGTTTTGGTTGCCCATGAT 57.971 45.000 0.00 0.00 41.49 2.45
2025 7039 1.799933 AAGGTTTTGGTTGCCCATGA 58.200 45.000 0.00 0.00 41.49 3.07
2026 7040 3.398406 GTTAAGGTTTTGGTTGCCCATG 58.602 45.455 0.00 0.00 41.49 3.66
2027 7041 2.370519 GGTTAAGGTTTTGGTTGCCCAT 59.629 45.455 0.00 0.00 41.49 4.00
2028 7042 1.763545 GGTTAAGGTTTTGGTTGCCCA 59.236 47.619 0.00 0.00 39.65 5.36
2029 7043 1.763545 TGGTTAAGGTTTTGGTTGCCC 59.236 47.619 0.00 0.00 0.00 5.36
2030 7044 3.545366 TTGGTTAAGGTTTTGGTTGCC 57.455 42.857 0.00 0.00 0.00 4.52
2031 7045 6.443934 AATTTTGGTTAAGGTTTTGGTTGC 57.556 33.333 0.00 0.00 0.00 4.17
2032 7046 8.680707 CAAAATTTTGGTTAAGGTTTTGGTTG 57.319 30.769 21.00 0.00 33.29 3.77
2064 7078 0.603439 GTTGCCCCACCAAAGCATTG 60.603 55.000 0.00 0.00 36.20 2.82
2065 7079 1.754107 GTTGCCCCACCAAAGCATT 59.246 52.632 0.00 0.00 36.20 3.56
2066 7080 2.216331 GGTTGCCCCACCAAAGCAT 61.216 57.895 0.00 0.00 36.73 3.79
2067 7081 2.841988 GGTTGCCCCACCAAAGCA 60.842 61.111 0.00 0.00 36.73 3.91
2068 7082 2.140138 AAGGTTGCCCCACCAAAGC 61.140 57.895 0.09 0.00 39.62 3.51
2069 7083 1.747774 CAAGGTTGCCCCACCAAAG 59.252 57.895 0.09 0.00 39.62 2.77
2070 7084 1.764054 CCAAGGTTGCCCCACCAAA 60.764 57.895 0.09 0.00 39.62 3.28
2071 7085 2.123077 CCAAGGTTGCCCCACCAA 60.123 61.111 0.09 0.00 39.62 3.67
2072 7086 4.232061 CCCAAGGTTGCCCCACCA 62.232 66.667 0.09 0.00 39.62 4.17
2074 7088 4.932105 TGCCCAAGGTTGCCCCAC 62.932 66.667 0.00 0.00 34.66 4.61
2075 7089 4.932105 GTGCCCAAGGTTGCCCCA 62.932 66.667 0.00 0.00 34.66 4.96
2076 7090 4.932105 TGTGCCCAAGGTTGCCCC 62.932 66.667 0.00 0.00 0.00 5.80
2077 7091 2.439104 TTTGTGCCCAAGGTTGCCC 61.439 57.895 0.00 0.00 0.00 5.36
2078 7092 1.227527 GTTTGTGCCCAAGGTTGCC 60.228 57.895 0.00 0.00 0.00 4.52
2079 7093 1.227527 GGTTTGTGCCCAAGGTTGC 60.228 57.895 0.00 0.00 0.00 4.17
2080 7094 0.539051 TTGGTTTGTGCCCAAGGTTG 59.461 50.000 0.00 0.00 37.05 3.77
2081 7095 1.065782 GTTTGGTTTGTGCCCAAGGTT 60.066 47.619 0.00 0.00 42.63 3.50
2082 7096 0.539518 GTTTGGTTTGTGCCCAAGGT 59.460 50.000 0.00 0.00 42.63 3.50
2083 7097 0.539051 TGTTTGGTTTGTGCCCAAGG 59.461 50.000 0.00 0.00 42.63 3.61
2084 7098 1.066573 TGTGTTTGGTTTGTGCCCAAG 60.067 47.619 0.00 0.00 42.63 3.61
2085 7099 0.976641 TGTGTTTGGTTTGTGCCCAA 59.023 45.000 0.00 0.00 40.15 4.12
2086 7100 0.247736 GTGTGTTTGGTTTGTGCCCA 59.752 50.000 0.00 0.00 0.00 5.36
2087 7101 0.461163 GGTGTGTTTGGTTTGTGCCC 60.461 55.000 0.00 0.00 0.00 5.36
2088 7102 0.461163 GGGTGTGTTTGGTTTGTGCC 60.461 55.000 0.00 0.00 0.00 5.01
2089 7103 0.461163 GGGGTGTGTTTGGTTTGTGC 60.461 55.000 0.00 0.00 0.00 4.57
2090 7104 1.190643 AGGGGTGTGTTTGGTTTGTG 58.809 50.000 0.00 0.00 0.00 3.33
2091 7105 2.024751 ACTAGGGGTGTGTTTGGTTTGT 60.025 45.455 0.00 0.00 0.00 2.83
2092 7106 2.661718 ACTAGGGGTGTGTTTGGTTTG 58.338 47.619 0.00 0.00 0.00 2.93
2093 7107 3.435457 GGTACTAGGGGTGTGTTTGGTTT 60.435 47.826 0.00 0.00 0.00 3.27
2094 7108 2.107031 GGTACTAGGGGTGTGTTTGGTT 59.893 50.000 0.00 0.00 0.00 3.67
2095 7109 1.701292 GGTACTAGGGGTGTGTTTGGT 59.299 52.381 0.00 0.00 0.00 3.67
2096 7110 1.700739 TGGTACTAGGGGTGTGTTTGG 59.299 52.381 0.00 0.00 0.00 3.28
2097 7111 3.495434 TTGGTACTAGGGGTGTGTTTG 57.505 47.619 0.00 0.00 0.00 2.93
2098 7112 4.734843 AATTGGTACTAGGGGTGTGTTT 57.265 40.909 0.00 0.00 0.00 2.83
2099 7113 4.105057 TGAAATTGGTACTAGGGGTGTGTT 59.895 41.667 0.00 0.00 0.00 3.32
2100 7114 3.653836 TGAAATTGGTACTAGGGGTGTGT 59.346 43.478 0.00 0.00 0.00 3.72
2101 7115 4.019681 TCTGAAATTGGTACTAGGGGTGTG 60.020 45.833 0.00 0.00 0.00 3.82
2102 7116 4.172807 TCTGAAATTGGTACTAGGGGTGT 58.827 43.478 0.00 0.00 0.00 4.16
2103 7117 4.837093 TCTGAAATTGGTACTAGGGGTG 57.163 45.455 0.00 0.00 0.00 4.61
2104 7118 4.788617 ACATCTGAAATTGGTACTAGGGGT 59.211 41.667 0.00 0.00 0.00 4.95
2105 7119 5.373812 ACATCTGAAATTGGTACTAGGGG 57.626 43.478 0.00 0.00 0.00 4.79
2106 7120 6.884295 TGAAACATCTGAAATTGGTACTAGGG 59.116 38.462 0.00 0.00 0.00 3.53
2107 7121 7.414540 GCTGAAACATCTGAAATTGGTACTAGG 60.415 40.741 0.00 0.00 0.00 3.02
2134 7148 0.735978 TATGACGTGTGAGCTTGGCG 60.736 55.000 0.00 0.00 0.00 5.69
2153 7167 3.251484 TGTGAACCATCCTTCCTTCTCT 58.749 45.455 0.00 0.00 0.00 3.10
2268 7282 0.390866 AGGAGCACGAGACATGCAAG 60.391 55.000 0.00 0.00 45.92 4.01
2294 7308 3.944055 AGAGATGTAGTGTGGTGTGAC 57.056 47.619 0.00 0.00 0.00 3.67
2311 7325 3.859443 AGAGCATGCTACAAGTCAAGAG 58.141 45.455 22.74 0.00 0.00 2.85
2317 7331 2.355513 CCCTGAAGAGCATGCTACAAGT 60.356 50.000 22.74 3.83 0.00 3.16
2329 7343 4.160329 TGGTATATAGTGCCCCTGAAGAG 58.840 47.826 0.00 0.00 0.00 2.85
2387 7401 1.576356 CCTCGTGCTTGGCTATTCTC 58.424 55.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.