Multiple sequence alignment - TraesCS1D01G057400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G057400 chr1D 100.000 5484 0 0 1 5484 37878979 37884462 0.000000e+00 10128.0
1 TraesCS1D01G057400 chr1D 90.336 714 56 8 2958 3662 253100120 253100829 0.000000e+00 924.0
2 TraesCS1D01G057400 chr1D 89.422 709 65 9 2958 3662 464999695 464998993 0.000000e+00 885.0
3 TraesCS1D01G057400 chr1D 95.210 167 6 2 3723 3888 38523975 38523810 4.210000e-66 263.0
4 TraesCS1D01G057400 chr1D 96.250 160 4 2 3730 3888 38548252 38548094 1.520000e-65 261.0
5 TraesCS1D01G057400 chr1D 94.928 138 7 0 43 180 254456242 254456105 3.330000e-52 217.0
6 TraesCS1D01G057400 chr1D 95.556 135 6 0 43 177 254457618 254457752 3.330000e-52 217.0
7 TraesCS1D01G057400 chr1D 100.000 39 0 0 3888 3926 37881897 37881935 7.620000e-09 73.1
8 TraesCS1D01G057400 chr1D 100.000 39 0 0 2919 2957 37882866 37882904 7.620000e-09 73.1
9 TraesCS1D01G057400 chr1B 93.825 2154 91 19 824 2957 57614976 57617107 0.000000e+00 3203.0
10 TraesCS1D01G057400 chr1B 95.810 1050 31 6 3888 4927 57617069 57618115 0.000000e+00 1683.0
11 TraesCS1D01G057400 chr1B 89.256 726 69 7 2958 3677 689677367 689676645 0.000000e+00 900.0
12 TraesCS1D01G057400 chr1B 88.981 726 70 7 2958 3677 689801008 689800287 0.000000e+00 889.0
13 TraesCS1D01G057400 chr1B 97.619 378 9 0 5107 5484 57618240 57618617 0.000000e+00 649.0
14 TraesCS1D01G057400 chr1B 90.421 261 19 4 580 838 57614698 57614954 6.800000e-89 339.0
15 TraesCS1D01G057400 chr1B 96.842 95 3 0 224 318 57614603 57614697 5.690000e-35 159.0
16 TraesCS1D01G057400 chr5D 92.917 720 49 2 2958 3677 135752393 135753110 0.000000e+00 1046.0
17 TraesCS1D01G057400 chr5D 94.928 138 7 0 43 180 6255083 6254946 3.330000e-52 217.0
18 TraesCS1D01G057400 chr5D 95.556 135 6 0 43 177 481593163 481593297 3.330000e-52 217.0
19 TraesCS1D01G057400 chr5D 95.556 135 6 0 43 177 481595963 481596097 3.330000e-52 217.0
20 TraesCS1D01G057400 chr5D 95.556 135 6 0 43 177 503311705 503311839 3.330000e-52 217.0
21 TraesCS1D01G057400 chr1A 93.192 661 30 4 1357 2002 36789149 36789809 0.000000e+00 957.0
22 TraesCS1D01G057400 chr1A 92.734 578 35 4 2196 2769 36790141 36790715 0.000000e+00 828.0
23 TraesCS1D01G057400 chr1A 92.489 466 23 2 3888 4341 36790837 36791302 0.000000e+00 656.0
24 TraesCS1D01G057400 chr1A 95.489 399 18 0 5086 5484 36791803 36792201 5.990000e-179 638.0
25 TraesCS1D01G057400 chr1A 93.958 331 16 2 1047 1373 36785376 36785706 1.060000e-136 497.0
26 TraesCS1D01G057400 chr1A 85.408 466 27 7 580 1006 36784022 36784485 3.900000e-121 446.0
27 TraesCS1D01G057400 chr1A 90.909 330 29 1 1903 2231 36789812 36790141 5.040000e-120 442.0
28 TraesCS1D01G057400 chr1A 92.424 264 20 0 320 583 295131700 295131963 1.440000e-100 377.0
29 TraesCS1D01G057400 chr1A 92.045 264 19 2 319 582 482341962 482341701 2.410000e-98 370.0
30 TraesCS1D01G057400 chr1A 91.176 272 22 2 319 589 367442865 367443135 8.680000e-98 368.0
31 TraesCS1D01G057400 chr1A 93.333 195 11 2 5 199 36783668 36783860 2.500000e-73 287.0
32 TraesCS1D01G057400 chr1A 92.893 197 12 2 4731 4927 36791610 36791804 8.990000e-73 285.0
33 TraesCS1D01G057400 chr1A 95.429 175 6 1 4926 5100 254349076 254348904 1.500000e-70 278.0
34 TraesCS1D01G057400 chr1A 95.152 165 8 0 3723 3887 427949754 427949590 1.520000e-65 261.0
35 TraesCS1D01G057400 chr1A 95.122 123 6 0 196 318 36783899 36784021 1.560000e-45 195.0
36 TraesCS1D01G057400 chr7A 90.522 728 57 7 2959 3677 636259440 636260164 0.000000e+00 952.0
37 TraesCS1D01G057400 chr7A 97.531 162 4 0 4926 5087 105168196 105168357 1.500000e-70 278.0
38 TraesCS1D01G057400 chr7A 95.868 121 5 0 5086 5206 130229660 130229540 4.330000e-46 196.0
39 TraesCS1D01G057400 chr6D 85.021 948 109 22 3891 4827 35716163 35715238 0.000000e+00 933.0
40 TraesCS1D01G057400 chr6D 89.889 722 69 4 2958 3677 420363741 420363022 0.000000e+00 926.0
41 TraesCS1D01G057400 chr6D 80.612 980 147 25 1043 1984 35667509 35666535 0.000000e+00 717.0
42 TraesCS1D01G057400 chr6D 84.535 763 77 21 4088 4829 36083438 36082696 0.000000e+00 717.0
43 TraesCS1D01G057400 chr6D 80.618 939 125 31 2048 2957 35641103 35640193 0.000000e+00 673.0
44 TraesCS1D01G057400 chr6D 81.667 660 98 15 4047 4691 36073555 36072904 1.350000e-145 527.0
45 TraesCS1D01G057400 chr6D 82.741 591 84 12 1409 1983 36084580 36083992 1.360000e-140 510.0
46 TraesCS1D01G057400 chr6D 77.034 971 168 39 1047 1985 35642069 35641122 1.760000e-139 507.0
47 TraesCS1D01G057400 chr6D 82.683 589 81 14 1047 1615 36106097 36105510 2.280000e-138 503.0
48 TraesCS1D01G057400 chr6D 92.105 266 19 2 319 583 434030534 434030798 1.870000e-99 374.0
49 TraesCS1D01G057400 chr6D 83.770 382 49 9 1043 1413 36090454 36090075 3.140000e-92 350.0
50 TraesCS1D01G057400 chr6D 82.382 403 48 17 2048 2435 35666519 35666125 4.100000e-86 329.0
51 TraesCS1D01G057400 chr6D 80.580 448 59 16 2034 2471 35717050 35716621 2.460000e-83 320.0
52 TraesCS1D01G057400 chr6D 86.219 283 36 3 1047 1327 35886243 35885962 2.480000e-78 303.0
53 TraesCS1D01G057400 chr6D 95.882 170 6 1 4923 5091 204160015 204160184 1.950000e-69 274.0
54 TraesCS1D01G057400 chr6D 84.286 280 37 6 2519 2791 35716609 35716330 3.260000e-67 267.0
55 TraesCS1D01G057400 chr6D 84.364 275 37 1 1670 1938 36105419 36105145 1.170000e-66 265.0
56 TraesCS1D01G057400 chr6D 86.301 146 10 10 4684 4823 36103933 36103792 3.420000e-32 150.0
57 TraesCS1D01G057400 chr6D 85.507 138 13 7 4684 4818 36072806 36072673 2.660000e-28 137.0
58 TraesCS1D01G057400 chr6B 83.420 959 132 16 1043 1977 75423482 75422527 0.000000e+00 865.0
59 TraesCS1D01G057400 chr6B 82.438 968 136 21 1043 1986 75526306 75525349 0.000000e+00 815.0
60 TraesCS1D01G057400 chr6B 82.371 953 112 25 3894 4827 75044896 75043981 0.000000e+00 778.0
61 TraesCS1D01G057400 chr6B 81.350 933 134 25 2043 2954 75422509 75421596 0.000000e+00 723.0
62 TraesCS1D01G057400 chr6B 78.715 996 153 35 1043 1985 75268453 75267464 1.310000e-170 610.0
63 TraesCS1D01G057400 chr6B 78.953 936 155 26 1073 1969 75510333 75509401 2.830000e-167 599.0
64 TraesCS1D01G057400 chr6B 76.234 993 171 49 1030 1985 75046730 75045766 2.990000e-127 466.0
65 TraesCS1D01G057400 chr6B 80.586 546 74 18 2048 2578 75525328 75524800 5.150000e-105 392.0
66 TraesCS1D01G057400 chr6B 77.338 556 111 10 1076 1628 75990588 75990045 1.150000e-81 315.0
67 TraesCS1D01G057400 chr6B 77.523 218 29 15 2688 2889 76152008 76151795 4.490000e-21 113.0
68 TraesCS1D01G057400 chr6B 97.778 45 1 0 870 914 75510481 75510437 1.640000e-10 78.7
69 TraesCS1D01G057400 chr4D 88.011 709 75 10 2958 3662 35141880 35141178 0.000000e+00 830.0
70 TraesCS1D01G057400 chr4D 94.928 138 7 0 43 180 206916376 206916239 3.330000e-52 217.0
71 TraesCS1D01G057400 chr2D 88.202 712 55 20 2958 3662 498810167 498809478 0.000000e+00 822.0
72 TraesCS1D01G057400 chr2D 91.912 272 20 2 319 589 264164329 264164059 4.010000e-101 379.0
73 TraesCS1D01G057400 chr6A 81.931 963 146 16 1047 1983 39670757 39669797 0.000000e+00 789.0
74 TraesCS1D01G057400 chr6A 81.781 977 145 21 1035 1983 39628976 39628005 0.000000e+00 787.0
75 TraesCS1D01G057400 chr6A 81.237 970 148 21 1046 1983 39581184 39580217 0.000000e+00 752.0
76 TraesCS1D01G057400 chr6A 81.624 936 130 23 2048 2957 39637843 39636924 0.000000e+00 737.0
77 TraesCS1D01G057400 chr6A 81.624 936 129 24 2048 2957 39590049 39589131 0.000000e+00 736.0
78 TraesCS1D01G057400 chr6A 81.383 940 128 27 2048 2957 39547936 39547014 0.000000e+00 723.0
79 TraesCS1D01G057400 chr6A 83.848 712 80 19 4132 4829 39669213 39668523 0.000000e+00 645.0
80 TraesCS1D01G057400 chr6A 83.006 712 86 19 4132 4829 39579632 39578942 3.630000e-171 612.0
81 TraesCS1D01G057400 chr6A 83.006 712 86 20 4132 4829 39627421 39626731 3.630000e-171 612.0
82 TraesCS1D01G057400 chr6A 83.019 583 71 20 1058 1615 39877985 39877406 2.280000e-138 503.0
83 TraesCS1D01G057400 chr6A 81.198 601 96 12 4047 4642 39876589 39876001 8.320000e-128 468.0
84 TraesCS1D01G057400 chr6A 83.491 424 56 9 3891 4312 39589167 39588756 3.100000e-102 383.0
85 TraesCS1D01G057400 chr6A 79.751 563 83 17 2040 2587 39669784 39669238 4.010000e-101 379.0
86 TraesCS1D01G057400 chr6A 82.311 424 61 10 3891 4312 39547050 39546639 6.760000e-94 355.0
87 TraesCS1D01G057400 chr6A 78.723 564 88 20 2040 2587 39580204 39579657 1.130000e-91 348.0
88 TraesCS1D01G057400 chr6A 81.882 425 62 10 3891 4312 39636960 39636548 1.460000e-90 344.0
89 TraesCS1D01G057400 chr6A 84.364 275 37 1 1670 1938 39877321 39877047 1.170000e-66 265.0
90 TraesCS1D01G057400 chr6A 74.262 610 116 29 1049 1629 45066225 45065628 9.250000e-53 219.0
91 TraesCS1D01G057400 chr6A 80.727 275 43 9 5212 5484 39587922 39587656 7.200000e-49 206.0
92 TraesCS1D01G057400 chr6A 80.727 275 42 10 5212 5484 39635714 39635449 2.590000e-48 204.0
93 TraesCS1D01G057400 chr6A 80.364 275 43 9 5212 5484 39545804 39545539 1.200000e-46 198.0
94 TraesCS1D01G057400 chr6A 86.131 137 14 5 4684 4818 39875894 39875761 5.730000e-30 143.0
95 TraesCS1D01G057400 chr6A 81.507 146 25 2 1484 1628 40529288 40529144 9.650000e-23 119.0
96 TraesCS1D01G057400 chr7B 82.320 724 84 27 3016 3711 112644973 112644266 6.120000e-164 588.0
97 TraesCS1D01G057400 chr7B 95.833 120 5 0 5086 5205 372327747 372327628 1.560000e-45 195.0
98 TraesCS1D01G057400 chr7B 95.000 120 6 0 5086 5205 479234642 479234523 7.250000e-44 189.0
99 TraesCS1D01G057400 chr7B 97.436 39 1 0 4889 4927 104977698 104977660 3.550000e-07 67.6
100 TraesCS1D01G057400 chr7B 100.000 33 0 0 3680 3712 332175306 332175338 1.650000e-05 62.1
101 TraesCS1D01G057400 chr3B 92.105 266 20 1 320 584 699229390 699229655 1.870000e-99 374.0
102 TraesCS1D01G057400 chr3B 96.364 165 6 0 3723 3887 4416970 4417134 7.000000e-69 272.0
103 TraesCS1D01G057400 chr3B 95.902 122 5 0 5086 5207 644507734 644507855 1.200000e-46 198.0
104 TraesCS1D01G057400 chr3B 100.000 36 0 0 4891 4926 506736066 506736101 3.550000e-07 67.6
105 TraesCS1D01G057400 chr3B 97.222 36 1 0 4891 4926 14466990 14466955 1.650000e-05 62.1
106 TraesCS1D01G057400 chr3B 92.105 38 3 0 3695 3732 788210338 788210375 3.000000e-03 54.7
107 TraesCS1D01G057400 chr4B 92.075 265 20 1 319 583 555841931 555842194 6.710000e-99 372.0
108 TraesCS1D01G057400 chr4B 90.698 43 3 1 3695 3737 347377859 347377900 7.670000e-04 56.5
109 TraesCS1D01G057400 chr5A 91.241 274 21 3 319 590 568181433 568181705 2.410000e-98 370.0
110 TraesCS1D01G057400 chr5A 90.357 280 21 6 305 582 470702723 470702448 4.040000e-96 363.0
111 TraesCS1D01G057400 chr5A 95.732 164 5 1 3728 3889 531029644 531029807 4.210000e-66 263.0
112 TraesCS1D01G057400 chr2A 98.171 164 3 0 4925 5088 460904165 460904002 2.500000e-73 287.0
113 TraesCS1D01G057400 chr2A 94.355 124 6 1 5086 5209 86445976 86445854 7.250000e-44 189.0
114 TraesCS1D01G057400 chr7D 97.024 168 2 3 3723 3888 197853156 197853322 4.180000e-71 279.0
115 TraesCS1D01G057400 chr7D 95.000 120 6 0 5086 5205 377606766 377606647 7.250000e-44 189.0
116 TraesCS1D01G057400 chr7D 95.000 120 6 0 5086 5205 457148914 457148795 7.250000e-44 189.0
117 TraesCS1D01G057400 chr7D 96.970 33 0 1 3705 3737 47107962 47107993 3.000000e-03 54.7
118 TraesCS1D01G057400 chr3D 96.988 166 4 1 4922 5087 397162710 397162546 1.500000e-70 278.0
119 TraesCS1D01G057400 chr3D 96.951 164 5 0 4924 5087 410670061 410670224 5.410000e-70 276.0
120 TraesCS1D01G057400 chr3D 97.222 36 1 0 4891 4926 23172771 23172736 1.650000e-05 62.1
121 TraesCS1D01G057400 chr3D 95.000 40 1 1 4888 4926 580330740 580330701 1.650000e-05 62.1
122 TraesCS1D01G057400 chr3A 96.951 164 5 0 4925 5088 725121668 725121505 5.410000e-70 276.0
123 TraesCS1D01G057400 chr3A 100.000 33 0 0 4891 4923 634493440 634493408 1.650000e-05 62.1
124 TraesCS1D01G057400 chr4A 96.386 166 6 0 4923 5088 637865294 637865129 1.950000e-69 274.0
125 TraesCS1D01G057400 chr4A 95.758 165 5 2 4926 5089 657101159 657100996 1.170000e-66 265.0
126 TraesCS1D01G057400 chrUn 96.250 160 5 1 3730 3888 104476336 104476177 1.520000e-65 261.0
127 TraesCS1D01G057400 chrUn 95.556 135 6 0 43 177 433906200 433906334 3.330000e-52 217.0
128 TraesCS1D01G057400 chr5B 96.226 159 6 0 3730 3888 570125578 570125420 1.520000e-65 261.0
129 TraesCS1D01G057400 chr5B 89.529 191 19 1 3695 3885 429022659 429022848 1.970000e-59 241.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G057400 chr1D 37878979 37884462 5483 False 3424.733333 10128 100.000000 1 5484 3 chr1D.!!$F3 5483
1 TraesCS1D01G057400 chr1D 253100120 253100829 709 False 924.000000 924 90.336000 2958 3662 1 chr1D.!!$F1 704
2 TraesCS1D01G057400 chr1D 464998993 464999695 702 True 885.000000 885 89.422000 2958 3662 1 chr1D.!!$R4 704
3 TraesCS1D01G057400 chr1B 57614603 57618617 4014 False 1206.600000 3203 94.903400 224 5484 5 chr1B.!!$F1 5260
4 TraesCS1D01G057400 chr1B 689676645 689677367 722 True 900.000000 900 89.256000 2958 3677 1 chr1B.!!$R1 719
5 TraesCS1D01G057400 chr1B 689800287 689801008 721 True 889.000000 889 88.981000 2958 3677 1 chr1B.!!$R2 719
6 TraesCS1D01G057400 chr5D 135752393 135753110 717 False 1046.000000 1046 92.917000 2958 3677 1 chr5D.!!$F1 719
7 TraesCS1D01G057400 chr5D 481593163 481596097 2934 False 217.000000 217 95.556000 43 177 2 chr5D.!!$F3 134
8 TraesCS1D01G057400 chr1A 36783668 36792201 8533 False 523.100000 957 92.552700 5 5484 10 chr1A.!!$F3 5479
9 TraesCS1D01G057400 chr7A 636259440 636260164 724 False 952.000000 952 90.522000 2959 3677 1 chr7A.!!$F2 718
10 TraesCS1D01G057400 chr6D 420363022 420363741 719 True 926.000000 926 89.889000 2958 3677 1 chr6D.!!$R3 719
11 TraesCS1D01G057400 chr6D 36082696 36084580 1884 True 613.500000 717 83.638000 1409 4829 2 chr6D.!!$R8 3420
12 TraesCS1D01G057400 chr6D 35640193 35642069 1876 True 590.000000 673 78.826000 1047 2957 2 chr6D.!!$R4 1910
13 TraesCS1D01G057400 chr6D 35666125 35667509 1384 True 523.000000 717 81.497000 1043 2435 2 chr6D.!!$R5 1392
14 TraesCS1D01G057400 chr6D 35715238 35717050 1812 True 506.666667 933 83.295667 2034 4827 3 chr6D.!!$R6 2793
15 TraesCS1D01G057400 chr6D 36072673 36073555 882 True 332.000000 527 83.587000 4047 4818 2 chr6D.!!$R7 771
16 TraesCS1D01G057400 chr6D 36103792 36106097 2305 True 306.000000 503 84.449333 1047 4823 3 chr6D.!!$R9 3776
17 TraesCS1D01G057400 chr6B 75421596 75423482 1886 True 794.000000 865 82.385000 1043 2954 2 chr6B.!!$R5 1911
18 TraesCS1D01G057400 chr6B 75043981 75046730 2749 True 622.000000 778 79.302500 1030 4827 2 chr6B.!!$R4 3797
19 TraesCS1D01G057400 chr6B 75267464 75268453 989 True 610.000000 610 78.715000 1043 1985 1 chr6B.!!$R1 942
20 TraesCS1D01G057400 chr6B 75524800 75526306 1506 True 603.500000 815 81.512000 1043 2578 2 chr6B.!!$R7 1535
21 TraesCS1D01G057400 chr6B 75509401 75510481 1080 True 338.850000 599 88.365500 870 1969 2 chr6B.!!$R6 1099
22 TraesCS1D01G057400 chr6B 75990045 75990588 543 True 315.000000 315 77.338000 1076 1628 1 chr6B.!!$R2 552
23 TraesCS1D01G057400 chr4D 35141178 35141880 702 True 830.000000 830 88.011000 2958 3662 1 chr4D.!!$R1 704
24 TraesCS1D01G057400 chr2D 498809478 498810167 689 True 822.000000 822 88.202000 2958 3662 1 chr2D.!!$R2 704
25 TraesCS1D01G057400 chr6A 39626731 39628976 2245 True 699.500000 787 82.393500 1035 4829 2 chr6A.!!$R6 3794
26 TraesCS1D01G057400 chr6A 39668523 39670757 2234 True 604.333333 789 81.843333 1047 4829 3 chr6A.!!$R8 3782
27 TraesCS1D01G057400 chr6A 39578942 39581184 2242 True 570.666667 752 80.988667 1046 4829 3 chr6A.!!$R4 3783
28 TraesCS1D01G057400 chr6A 39587656 39590049 2393 True 441.666667 736 81.947333 2048 5484 3 chr6A.!!$R5 3436
29 TraesCS1D01G057400 chr6A 39635449 39637843 2394 True 428.333333 737 81.411000 2048 5484 3 chr6A.!!$R7 3436
30 TraesCS1D01G057400 chr6A 39545539 39547936 2397 True 425.333333 723 81.352667 2048 5484 3 chr6A.!!$R3 3436
31 TraesCS1D01G057400 chr6A 39875761 39877985 2224 True 344.750000 503 83.678000 1058 4818 4 chr6A.!!$R9 3760
32 TraesCS1D01G057400 chr6A 45065628 45066225 597 True 219.000000 219 74.262000 1049 1629 1 chr6A.!!$R2 580
33 TraesCS1D01G057400 chr7B 112644266 112644973 707 True 588.000000 588 82.320000 3016 3711 1 chr7B.!!$R2 695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 555 0.110823 CTAAACGAGTGGTGCAACGC 60.111 55.0 7.36 7.36 38.12 4.84 F
517 560 0.179225 CGAGTGGTGCAACGCAATAC 60.179 55.0 19.16 0.00 41.47 1.89 F
1929 6544 0.171903 GTGTTGCATCATGGGTGCTC 59.828 55.0 19.81 14.55 42.92 4.26 F
3728 8608 0.325296 ACCTCTTGGCTCGGATACCA 60.325 55.0 0.00 0.00 36.63 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 6010 0.035439 CACCGCCCCACTGATAAAGT 60.035 55.000 0.00 0.00 40.93 2.66 R
2502 7293 1.966451 GAGGTCCACAGCCGGTTTG 60.966 63.158 1.90 4.77 0.00 2.93 R
3769 8649 0.034186 CCCACCAGGCTCAAGCAATA 60.034 55.000 4.13 0.00 44.36 1.90 R
5022 11868 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 8.485976 AGATTAATACTTCAAGTTGCTCAGTC 57.514 34.615 0.00 0.00 0.00 3.51
142 143 6.152831 TCAGTCGAGAAAGAGATGGTTGAATA 59.847 38.462 0.00 0.00 0.00 1.75
222 265 0.679321 GGCTGGGCAGAGAAGGAAAG 60.679 60.000 0.00 0.00 0.00 2.62
287 330 2.961526 TCGACTAAAGAGGGCATGAC 57.038 50.000 0.00 0.00 0.00 3.06
318 361 2.817258 GCCAACCACTACATAAAGCACA 59.183 45.455 0.00 0.00 0.00 4.57
319 362 3.443681 GCCAACCACTACATAAAGCACAT 59.556 43.478 0.00 0.00 0.00 3.21
320 363 4.638421 GCCAACCACTACATAAAGCACATA 59.362 41.667 0.00 0.00 0.00 2.29
321 364 5.448632 GCCAACCACTACATAAAGCACATAC 60.449 44.000 0.00 0.00 0.00 2.39
322 365 5.880332 CCAACCACTACATAAAGCACATACT 59.120 40.000 0.00 0.00 0.00 2.12
323 366 6.037172 CCAACCACTACATAAAGCACATACTC 59.963 42.308 0.00 0.00 0.00 2.59
324 367 5.671493 ACCACTACATAAAGCACATACTCC 58.329 41.667 0.00 0.00 0.00 3.85
325 368 5.057149 CCACTACATAAAGCACATACTCCC 58.943 45.833 0.00 0.00 0.00 4.30
326 369 5.163301 CCACTACATAAAGCACATACTCCCT 60.163 44.000 0.00 0.00 0.00 4.20
327 370 5.986135 CACTACATAAAGCACATACTCCCTC 59.014 44.000 0.00 0.00 0.00 4.30
328 371 4.423625 ACATAAAGCACATACTCCCTCC 57.576 45.455 0.00 0.00 0.00 4.30
329 372 3.181465 ACATAAAGCACATACTCCCTCCG 60.181 47.826 0.00 0.00 0.00 4.63
330 373 1.276622 AAAGCACATACTCCCTCCGT 58.723 50.000 0.00 0.00 0.00 4.69
331 374 1.276622 AAGCACATACTCCCTCCGTT 58.723 50.000 0.00 0.00 0.00 4.44
332 375 1.276622 AGCACATACTCCCTCCGTTT 58.723 50.000 0.00 0.00 0.00 3.60
333 376 1.207329 AGCACATACTCCCTCCGTTTC 59.793 52.381 0.00 0.00 0.00 2.78
334 377 1.207329 GCACATACTCCCTCCGTTTCT 59.793 52.381 0.00 0.00 0.00 2.52
335 378 2.429610 GCACATACTCCCTCCGTTTCTA 59.570 50.000 0.00 0.00 0.00 2.10
336 379 3.118884 GCACATACTCCCTCCGTTTCTAA 60.119 47.826 0.00 0.00 0.00 2.10
337 380 4.622220 GCACATACTCCCTCCGTTTCTAAA 60.622 45.833 0.00 0.00 0.00 1.85
338 381 5.671493 CACATACTCCCTCCGTTTCTAAAT 58.329 41.667 0.00 0.00 0.00 1.40
339 382 6.684613 GCACATACTCCCTCCGTTTCTAAATA 60.685 42.308 0.00 0.00 0.00 1.40
340 383 7.442656 CACATACTCCCTCCGTTTCTAAATAT 58.557 38.462 0.00 0.00 0.00 1.28
341 384 8.582437 CACATACTCCCTCCGTTTCTAAATATA 58.418 37.037 0.00 0.00 0.00 0.86
342 385 8.804204 ACATACTCCCTCCGTTTCTAAATATAG 58.196 37.037 0.00 0.00 0.00 1.31
343 386 6.667558 ACTCCCTCCGTTTCTAAATATAGG 57.332 41.667 0.00 0.00 0.00 2.57
344 387 5.543020 ACTCCCTCCGTTTCTAAATATAGGG 59.457 44.000 0.00 0.00 43.23 3.53
345 388 5.470501 TCCCTCCGTTTCTAAATATAGGGT 58.529 41.667 13.96 0.00 42.58 4.34
346 389 5.306160 TCCCTCCGTTTCTAAATATAGGGTG 59.694 44.000 13.96 0.00 42.58 4.61
347 390 5.071384 CCCTCCGTTTCTAAATATAGGGTGT 59.929 44.000 0.00 0.00 38.09 4.16
348 391 6.268387 CCCTCCGTTTCTAAATATAGGGTGTA 59.732 42.308 0.00 0.00 38.09 2.90
349 392 7.038516 CCCTCCGTTTCTAAATATAGGGTGTAT 60.039 40.741 0.00 0.00 38.09 2.29
350 393 9.028284 CCTCCGTTTCTAAATATAGGGTGTATA 57.972 37.037 0.00 0.00 0.00 1.47
352 395 9.592196 TCCGTTTCTAAATATAGGGTGTATAGT 57.408 33.333 0.00 0.00 0.00 2.12
361 404 8.459911 AATATAGGGTGTATAGTTTTTGGCAC 57.540 34.615 0.00 0.00 0.00 5.01
362 405 3.078837 AGGGTGTATAGTTTTTGGCACG 58.921 45.455 0.00 0.00 0.00 5.34
363 406 3.075884 GGGTGTATAGTTTTTGGCACGA 58.924 45.455 0.00 0.00 0.00 4.35
364 407 3.502979 GGGTGTATAGTTTTTGGCACGAA 59.497 43.478 0.00 0.00 0.00 3.85
365 408 4.023021 GGGTGTATAGTTTTTGGCACGAAA 60.023 41.667 0.00 0.00 0.00 3.46
366 409 5.507650 GGGTGTATAGTTTTTGGCACGAAAA 60.508 40.000 0.00 0.00 0.00 2.29
367 410 6.153756 GGTGTATAGTTTTTGGCACGAAAAT 58.846 36.000 0.84 1.41 0.00 1.82
368 411 6.643360 GGTGTATAGTTTTTGGCACGAAAATT 59.357 34.615 0.84 0.06 0.00 1.82
369 412 7.808856 GGTGTATAGTTTTTGGCACGAAAATTA 59.191 33.333 0.84 2.13 0.00 1.40
370 413 9.182933 GTGTATAGTTTTTGGCACGAAAATTAA 57.817 29.630 0.84 0.00 0.00 1.40
371 414 9.745880 TGTATAGTTTTTGGCACGAAAATTAAA 57.254 25.926 0.84 0.00 0.00 1.52
374 417 7.835634 AGTTTTTGGCACGAAAATTAAAGAA 57.164 28.000 0.84 0.00 0.00 2.52
375 418 8.432110 AGTTTTTGGCACGAAAATTAAAGAAT 57.568 26.923 0.84 0.00 0.00 2.40
376 419 8.334632 AGTTTTTGGCACGAAAATTAAAGAATG 58.665 29.630 0.84 0.00 0.00 2.67
377 420 5.837586 TTGGCACGAAAATTAAAGAATGC 57.162 34.783 0.00 0.00 0.00 3.56
378 421 4.876125 TGGCACGAAAATTAAAGAATGCA 58.124 34.783 0.00 0.00 33.48 3.96
379 422 4.683781 TGGCACGAAAATTAAAGAATGCAC 59.316 37.500 0.00 0.00 33.48 4.57
380 423 4.201485 GGCACGAAAATTAAAGAATGCACG 60.201 41.667 0.00 0.00 33.48 5.34
381 424 4.381566 GCACGAAAATTAAAGAATGCACGT 59.618 37.500 0.00 0.00 32.18 4.49
382 425 5.662815 GCACGAAAATTAAAGAATGCACGTG 60.663 40.000 12.28 12.28 42.02 4.49
383 426 5.623264 CACGAAAATTAAAGAATGCACGTGA 59.377 36.000 22.23 4.80 41.88 4.35
384 427 6.141527 CACGAAAATTAAAGAATGCACGTGAA 59.858 34.615 22.23 10.11 41.88 3.18
385 428 6.359617 ACGAAAATTAAAGAATGCACGTGAAG 59.640 34.615 22.23 0.00 31.45 3.02
386 429 6.183359 CGAAAATTAAAGAATGCACGTGAAGG 60.183 38.462 22.23 0.00 0.00 3.46
387 430 4.701956 ATTAAAGAATGCACGTGAAGGG 57.298 40.909 22.23 0.00 0.00 3.95
388 431 2.270352 AAAGAATGCACGTGAAGGGA 57.730 45.000 22.23 0.00 0.00 4.20
389 432 2.270352 AAGAATGCACGTGAAGGGAA 57.730 45.000 22.23 0.00 0.00 3.97
390 433 2.270352 AGAATGCACGTGAAGGGAAA 57.730 45.000 22.23 0.00 0.00 3.13
391 434 2.582052 AGAATGCACGTGAAGGGAAAA 58.418 42.857 22.23 0.00 0.00 2.29
392 435 3.157087 AGAATGCACGTGAAGGGAAAAT 58.843 40.909 22.23 0.00 0.00 1.82
393 436 3.573967 AGAATGCACGTGAAGGGAAAATT 59.426 39.130 22.23 0.00 0.00 1.82
394 437 4.039124 AGAATGCACGTGAAGGGAAAATTT 59.961 37.500 22.23 0.00 0.00 1.82
395 438 3.363341 TGCACGTGAAGGGAAAATTTC 57.637 42.857 22.23 0.00 0.00 2.17
396 439 2.690497 TGCACGTGAAGGGAAAATTTCA 59.310 40.909 22.23 0.00 0.00 2.69
397 440 3.049912 GCACGTGAAGGGAAAATTTCAC 58.950 45.455 22.23 3.68 46.01 3.18
401 444 4.830826 GTGAAGGGAAAATTTCACGAGT 57.169 40.909 8.09 0.00 42.39 4.18
402 445 5.183014 GTGAAGGGAAAATTTCACGAGTT 57.817 39.130 8.09 0.00 42.39 3.01
403 446 5.588240 GTGAAGGGAAAATTTCACGAGTTT 58.412 37.500 8.09 0.00 42.39 2.66
404 447 6.040247 GTGAAGGGAAAATTTCACGAGTTTT 58.960 36.000 8.09 0.00 42.39 2.43
405 448 6.019881 GTGAAGGGAAAATTTCACGAGTTTTG 60.020 38.462 8.09 0.00 42.39 2.44
406 449 5.845391 AGGGAAAATTTCACGAGTTTTGA 57.155 34.783 8.09 0.00 38.39 2.69
407 450 5.831997 AGGGAAAATTTCACGAGTTTTGAG 58.168 37.500 8.09 0.00 38.39 3.02
408 451 5.359860 AGGGAAAATTTCACGAGTTTTGAGT 59.640 36.000 8.09 0.00 38.39 3.41
409 452 5.458779 GGGAAAATTTCACGAGTTTTGAGTG 59.541 40.000 8.09 0.00 37.24 3.51
410 453 6.262601 GGAAAATTTCACGAGTTTTGAGTGA 58.737 36.000 8.09 0.00 42.36 3.41
411 454 6.414987 GGAAAATTTCACGAGTTTTGAGTGAG 59.585 38.462 8.09 0.00 44.37 3.51
412 455 6.677781 AAATTTCACGAGTTTTGAGTGAGA 57.322 33.333 0.00 0.00 44.37 3.27
413 456 6.867662 AATTTCACGAGTTTTGAGTGAGAT 57.132 33.333 0.00 0.00 44.37 2.75
414 457 6.867662 ATTTCACGAGTTTTGAGTGAGATT 57.132 33.333 0.00 0.00 44.37 2.40
415 458 7.962964 ATTTCACGAGTTTTGAGTGAGATTA 57.037 32.000 0.00 0.00 44.37 1.75
416 459 6.764877 TTCACGAGTTTTGAGTGAGATTAC 57.235 37.500 0.00 0.00 44.37 1.89
417 460 5.838529 TCACGAGTTTTGAGTGAGATTACA 58.161 37.500 0.00 0.00 39.63 2.41
418 461 5.690409 TCACGAGTTTTGAGTGAGATTACAC 59.310 40.000 0.00 0.00 39.63 2.90
419 462 4.989168 ACGAGTTTTGAGTGAGATTACACC 59.011 41.667 0.00 0.00 41.12 4.16
420 463 5.221461 ACGAGTTTTGAGTGAGATTACACCT 60.221 40.000 0.00 0.00 41.12 4.00
421 464 6.015688 ACGAGTTTTGAGTGAGATTACACCTA 60.016 38.462 0.00 0.00 41.12 3.08
422 465 6.866770 CGAGTTTTGAGTGAGATTACACCTAA 59.133 38.462 0.00 0.00 41.12 2.69
423 466 7.148787 CGAGTTTTGAGTGAGATTACACCTAAC 60.149 40.741 0.00 0.00 41.12 2.34
424 467 7.736893 AGTTTTGAGTGAGATTACACCTAACT 58.263 34.615 0.00 0.00 41.12 2.24
425 468 8.867097 AGTTTTGAGTGAGATTACACCTAACTA 58.133 33.333 0.00 0.00 41.12 2.24
426 469 9.485206 GTTTTGAGTGAGATTACACCTAACTAA 57.515 33.333 0.00 0.00 41.12 2.24
429 472 9.653287 TTGAGTGAGATTACACCTAACTAATTG 57.347 33.333 0.00 0.00 41.12 2.32
430 473 9.031537 TGAGTGAGATTACACCTAACTAATTGA 57.968 33.333 0.00 0.00 41.12 2.57
431 474 9.303537 GAGTGAGATTACACCTAACTAATTGAC 57.696 37.037 0.00 0.00 41.12 3.18
432 475 8.812972 AGTGAGATTACACCTAACTAATTGACA 58.187 33.333 0.00 0.00 41.12 3.58
433 476 9.601217 GTGAGATTACACCTAACTAATTGACAT 57.399 33.333 0.00 0.00 35.07 3.06
434 477 9.599866 TGAGATTACACCTAACTAATTGACATG 57.400 33.333 0.00 0.00 0.00 3.21
435 478 9.817809 GAGATTACACCTAACTAATTGACATGA 57.182 33.333 0.00 0.00 0.00 3.07
436 479 9.823647 AGATTACACCTAACTAATTGACATGAG 57.176 33.333 0.00 0.00 0.00 2.90
437 480 9.817809 GATTACACCTAACTAATTGACATGAGA 57.182 33.333 0.00 0.00 0.00 3.27
440 483 8.918202 ACACCTAACTAATTGACATGAGAAAA 57.082 30.769 0.00 0.00 0.00 2.29
441 484 9.520515 ACACCTAACTAATTGACATGAGAAAAT 57.479 29.630 0.00 0.00 0.00 1.82
453 496 7.810658 TGACATGAGAAAATAGAGAAGTTTGC 58.189 34.615 0.00 0.00 0.00 3.68
454 497 7.094634 TGACATGAGAAAATAGAGAAGTTTGCC 60.095 37.037 0.00 0.00 0.00 4.52
455 498 6.944862 ACATGAGAAAATAGAGAAGTTTGCCT 59.055 34.615 0.00 0.00 0.00 4.75
456 499 8.103305 ACATGAGAAAATAGAGAAGTTTGCCTA 58.897 33.333 0.00 0.00 0.00 3.93
457 500 8.950210 CATGAGAAAATAGAGAAGTTTGCCTAA 58.050 33.333 0.00 0.00 0.00 2.69
458 501 9.692325 ATGAGAAAATAGAGAAGTTTGCCTAAT 57.308 29.630 0.00 0.00 0.00 1.73
508 551 6.811253 AAAAATATCTAAACGAGTGGTGCA 57.189 33.333 0.00 0.00 0.00 4.57
509 552 6.811253 AAAATATCTAAACGAGTGGTGCAA 57.189 33.333 0.00 0.00 0.00 4.08
510 553 5.796350 AATATCTAAACGAGTGGTGCAAC 57.204 39.130 0.00 0.00 0.00 4.17
511 554 1.493772 TCTAAACGAGTGGTGCAACG 58.506 50.000 0.00 0.00 38.12 4.10
512 555 0.110823 CTAAACGAGTGGTGCAACGC 60.111 55.000 7.36 7.36 38.12 4.84
513 556 0.810426 TAAACGAGTGGTGCAACGCA 60.810 50.000 19.16 0.00 38.12 5.24
514 557 1.649390 AAACGAGTGGTGCAACGCAA 61.649 50.000 19.16 0.00 41.47 4.85
515 558 1.444119 AACGAGTGGTGCAACGCAAT 61.444 50.000 19.16 0.00 41.47 3.56
516 559 0.601576 ACGAGTGGTGCAACGCAATA 60.602 50.000 19.16 0.00 41.47 1.90
517 560 0.179225 CGAGTGGTGCAACGCAATAC 60.179 55.000 19.16 0.00 41.47 1.89
518 561 0.871722 GAGTGGTGCAACGCAATACA 59.128 50.000 19.16 0.00 41.47 2.29
519 562 0.591170 AGTGGTGCAACGCAATACAC 59.409 50.000 19.16 0.00 41.47 2.90
520 563 4.859784 GGTGCAACGCAATACACC 57.140 55.556 0.00 0.00 45.22 4.16
528 571 6.262601 GTGCAACGCAATACACCTTATATTT 58.737 36.000 0.00 0.00 41.47 1.40
531 574 8.126074 TGCAACGCAATACACCTTATATTTTAG 58.874 33.333 0.00 0.00 34.76 1.85
532 575 8.339714 GCAACGCAATACACCTTATATTTTAGA 58.660 33.333 0.00 0.00 0.00 2.10
574 617 9.837681 TCTATACACCTTATATCAAGGAATGGA 57.162 33.333 9.96 5.31 39.81 3.41
576 619 8.742125 ATACACCTTATATCAAGGAATGGAGA 57.258 34.615 9.96 0.00 39.81 3.71
577 620 7.072263 ACACCTTATATCAAGGAATGGAGAG 57.928 40.000 9.96 0.00 39.81 3.20
607 650 5.412640 TGTTTGTCTGTCGTGAAGTTAGAA 58.587 37.500 0.00 0.00 0.00 2.10
622 665 1.395635 TAGAATCGCTAGGCCGTGAA 58.604 50.000 0.00 0.00 0.00 3.18
625 668 1.614241 AATCGCTAGGCCGTGAAGGT 61.614 55.000 0.00 0.00 43.70 3.50
633 676 2.886134 GCCGTGAAGGTGTGGGGTA 61.886 63.158 0.00 0.00 43.70 3.69
638 682 1.074889 GTGAAGGTGTGGGGTAATGGT 59.925 52.381 0.00 0.00 0.00 3.55
668 712 1.541588 AGTGGCGGCTGAATTTTCTTC 59.458 47.619 11.43 0.00 0.00 2.87
682 726 6.985645 TGAATTTTCTTCTTTTGATGTGTGGG 59.014 34.615 0.00 0.00 0.00 4.61
729 773 2.172717 TCTAGGGTGGCCTAAATCTTGC 59.827 50.000 3.32 0.00 0.00 4.01
815 867 5.528043 TTTTGTTGGTTCTGTGCACATAT 57.472 34.783 22.00 0.00 0.00 1.78
850 938 7.227116 TCTGAAAATCAATCAAAAGGGCAAAAG 59.773 33.333 0.00 0.00 0.00 2.27
966 1088 1.003118 GTCACTCCACAAGCCCACATA 59.997 52.381 0.00 0.00 0.00 2.29
1002 1999 1.077930 CTCCACCACCTCCAGCATG 60.078 63.158 0.00 0.00 0.00 4.06
1240 2254 2.583441 CGCCACAACCCTCCTCTCA 61.583 63.158 0.00 0.00 0.00 3.27
1471 6009 2.275318 CAGGGTTCGATGAGAAGAAGC 58.725 52.381 0.00 0.00 39.95 3.86
1472 6010 1.902508 AGGGTTCGATGAGAAGAAGCA 59.097 47.619 9.14 0.00 44.05 3.91
1631 6178 2.031314 GTGATCGCATCTCAACACCATG 59.969 50.000 0.16 0.00 0.00 3.66
1780 6387 2.166459 CAGATCCTAGCTGTGAAACCGA 59.834 50.000 0.00 0.00 34.36 4.69
1929 6544 0.171903 GTGTTGCATCATGGGTGCTC 59.828 55.000 19.81 14.55 42.92 4.26
2223 7002 8.194769 CCTTTACATTGTGGGTATAACAAATCC 58.805 37.037 0.00 0.00 40.69 3.01
2225 7004 8.651589 TTACATTGTGGGTATAACAAATCCAA 57.348 30.769 0.00 0.00 40.69 3.53
2295 7081 8.181487 TCGTGCTAAGCTAGTAATTTTAAGTG 57.819 34.615 0.00 0.00 0.00 3.16
2296 7082 7.277098 TCGTGCTAAGCTAGTAATTTTAAGTGG 59.723 37.037 0.00 0.00 0.00 4.00
2297 7083 7.064253 CGTGCTAAGCTAGTAATTTTAAGTGGT 59.936 37.037 0.00 0.00 0.00 4.16
2473 7264 6.205784 CGCTTTTCTAGAGAGGTGATTCTAG 58.794 44.000 0.10 2.83 42.66 2.43
2475 7266 6.978080 GCTTTTCTAGAGAGGTGATTCTAGTG 59.022 42.308 8.02 1.31 42.19 2.74
2482 7273 5.761234 AGAGAGGTGATTCTAGTGTATCGTC 59.239 44.000 0.00 0.00 0.00 4.20
2502 7293 5.239963 TCGTCATTTTTAGTTCCCTTGGTTC 59.760 40.000 0.00 0.00 0.00 3.62
2515 7306 3.039134 GGTTCAAACCGGCTGTGG 58.961 61.111 0.00 0.00 39.66 4.17
2825 7667 7.874940 TGGAAATTGAGACAACTACATGAAAG 58.125 34.615 0.00 0.00 0.00 2.62
2892 7737 4.707030 TGGCACATTATGAAGCTTTCAG 57.293 40.909 0.00 0.00 43.98 3.02
2949 7796 7.864108 TCTTACATCCACAATAATGACTTGG 57.136 36.000 0.00 0.00 0.00 3.61
2950 7797 7.402054 TCTTACATCCACAATAATGACTTGGT 58.598 34.615 0.00 0.00 0.00 3.67
2951 7798 7.888021 TCTTACATCCACAATAATGACTTGGTT 59.112 33.333 0.00 0.00 0.00 3.67
2952 7799 6.916360 ACATCCACAATAATGACTTGGTTT 57.084 33.333 0.00 0.00 0.00 3.27
2953 7800 6.690530 ACATCCACAATAATGACTTGGTTTG 58.309 36.000 0.00 0.00 0.00 2.93
2954 7801 6.493115 ACATCCACAATAATGACTTGGTTTGA 59.507 34.615 0.00 0.00 0.00 2.69
2955 7802 7.178983 ACATCCACAATAATGACTTGGTTTGAT 59.821 33.333 0.00 0.00 0.00 2.57
2956 7803 8.685427 CATCCACAATAATGACTTGGTTTGATA 58.315 33.333 0.00 0.00 0.00 2.15
3191 8038 3.861797 GTGGATCGATGGGCGGGT 61.862 66.667 0.54 0.00 41.33 5.28
3220 8067 2.690326 GCGACGGCTATGATTGGTT 58.310 52.632 0.00 0.00 35.83 3.67
3484 8353 1.144057 GATCAAGATGACCGGCGGT 59.856 57.895 34.81 34.81 39.44 5.68
3684 8564 7.470079 TCGACTTGCGATAGTATAATGTATCC 58.530 38.462 0.00 0.00 45.59 2.59
3686 8566 7.387119 ACTTGCGATAGTATAATGTATCCGA 57.613 36.000 0.00 0.00 39.35 4.55
3723 8603 4.541213 AAGACCTCTTGGCTCGGA 57.459 55.556 0.00 0.00 34.38 4.55
3724 8604 2.998493 AAGACCTCTTGGCTCGGAT 58.002 52.632 0.00 0.00 34.38 4.18
3725 8605 2.160721 AAGACCTCTTGGCTCGGATA 57.839 50.000 0.00 0.00 34.38 2.59
3726 8606 1.404843 AGACCTCTTGGCTCGGATAC 58.595 55.000 0.00 0.00 36.63 2.24
3727 8607 0.389757 GACCTCTTGGCTCGGATACC 59.610 60.000 0.00 0.00 36.63 2.73
3728 8608 0.325296 ACCTCTTGGCTCGGATACCA 60.325 55.000 0.00 0.00 36.63 3.25
3729 8609 1.051812 CCTCTTGGCTCGGATACCAT 58.948 55.000 1.20 0.00 35.42 3.55
3730 8610 1.270518 CCTCTTGGCTCGGATACCATG 60.271 57.143 1.20 4.31 35.42 3.66
3731 8611 1.414181 CTCTTGGCTCGGATACCATGT 59.586 52.381 10.79 0.00 35.42 3.21
3732 8612 1.837439 TCTTGGCTCGGATACCATGTT 59.163 47.619 10.79 0.00 35.42 2.71
3733 8613 3.035363 TCTTGGCTCGGATACCATGTTA 58.965 45.455 10.79 0.00 35.42 2.41
3734 8614 3.069586 TCTTGGCTCGGATACCATGTTAG 59.930 47.826 10.79 3.14 35.42 2.34
3735 8615 2.673258 TGGCTCGGATACCATGTTAGA 58.327 47.619 0.00 0.00 0.00 2.10
3736 8616 3.035363 TGGCTCGGATACCATGTTAGAA 58.965 45.455 0.00 0.00 0.00 2.10
3737 8617 3.069586 TGGCTCGGATACCATGTTAGAAG 59.930 47.826 0.00 0.00 0.00 2.85
3738 8618 3.555168 GGCTCGGATACCATGTTAGAAGG 60.555 52.174 0.00 0.00 0.00 3.46
3739 8619 3.555168 GCTCGGATACCATGTTAGAAGGG 60.555 52.174 0.00 0.00 0.00 3.95
3740 8620 3.895656 CTCGGATACCATGTTAGAAGGGA 59.104 47.826 0.00 0.00 0.00 4.20
3741 8621 3.895656 TCGGATACCATGTTAGAAGGGAG 59.104 47.826 0.00 0.00 0.00 4.30
3742 8622 3.895656 CGGATACCATGTTAGAAGGGAGA 59.104 47.826 0.00 0.00 0.00 3.71
3743 8623 4.021894 CGGATACCATGTTAGAAGGGAGAG 60.022 50.000 0.00 0.00 0.00 3.20
3744 8624 5.148502 GGATACCATGTTAGAAGGGAGAGA 58.851 45.833 0.00 0.00 0.00 3.10
3745 8625 5.245075 GGATACCATGTTAGAAGGGAGAGAG 59.755 48.000 0.00 0.00 0.00 3.20
3746 8626 3.379452 ACCATGTTAGAAGGGAGAGAGG 58.621 50.000 0.00 0.00 0.00 3.69
3747 8627 2.703007 CCATGTTAGAAGGGAGAGAGGG 59.297 54.545 0.00 0.00 0.00 4.30
3748 8628 3.631087 CCATGTTAGAAGGGAGAGAGGGA 60.631 52.174 0.00 0.00 0.00 4.20
3749 8629 4.230455 CATGTTAGAAGGGAGAGAGGGAT 58.770 47.826 0.00 0.00 0.00 3.85
3750 8630 4.354208 TGTTAGAAGGGAGAGAGGGATT 57.646 45.455 0.00 0.00 0.00 3.01
3751 8631 4.290942 TGTTAGAAGGGAGAGAGGGATTC 58.709 47.826 0.00 0.00 0.00 2.52
3752 8632 2.080654 AGAAGGGAGAGAGGGATTCG 57.919 55.000 0.00 0.00 0.00 3.34
3753 8633 1.044611 GAAGGGAGAGAGGGATTCGG 58.955 60.000 0.00 0.00 0.00 4.30
3754 8634 0.340208 AAGGGAGAGAGGGATTCGGT 59.660 55.000 0.00 0.00 0.00 4.69
3755 8635 0.397816 AGGGAGAGAGGGATTCGGTG 60.398 60.000 0.00 0.00 0.00 4.94
3756 8636 1.403687 GGGAGAGAGGGATTCGGTGG 61.404 65.000 0.00 0.00 0.00 4.61
3757 8637 0.397254 GGAGAGAGGGATTCGGTGGA 60.397 60.000 0.00 0.00 0.00 4.02
3758 8638 1.486211 GAGAGAGGGATTCGGTGGAA 58.514 55.000 0.00 0.00 36.41 3.53
3759 8639 2.043227 GAGAGAGGGATTCGGTGGAAT 58.957 52.381 0.00 0.00 45.43 3.01
3760 8640 3.231818 GAGAGAGGGATTCGGTGGAATA 58.768 50.000 0.00 0.00 42.86 1.75
3761 8641 3.235200 AGAGAGGGATTCGGTGGAATAG 58.765 50.000 0.00 0.00 42.86 1.73
3762 8642 2.966516 GAGAGGGATTCGGTGGAATAGT 59.033 50.000 0.00 0.00 42.86 2.12
3763 8643 3.385115 AGAGGGATTCGGTGGAATAGTT 58.615 45.455 0.00 0.00 42.86 2.24
3764 8644 3.388350 AGAGGGATTCGGTGGAATAGTTC 59.612 47.826 0.00 0.00 42.86 3.01
3765 8645 2.102588 AGGGATTCGGTGGAATAGTTCG 59.897 50.000 0.00 0.00 42.86 3.95
3766 8646 2.159000 GGGATTCGGTGGAATAGTTCGT 60.159 50.000 0.00 0.00 42.86 3.85
3767 8647 3.528532 GGATTCGGTGGAATAGTTCGTT 58.471 45.455 0.00 0.00 42.86 3.85
3768 8648 3.308866 GGATTCGGTGGAATAGTTCGTTG 59.691 47.826 0.00 0.00 42.86 4.10
3769 8649 3.389925 TTCGGTGGAATAGTTCGTTGT 57.610 42.857 0.00 0.00 0.00 3.32
3770 8650 4.517952 TTCGGTGGAATAGTTCGTTGTA 57.482 40.909 0.00 0.00 0.00 2.41
3771 8651 4.724074 TCGGTGGAATAGTTCGTTGTAT 57.276 40.909 0.00 0.00 0.00 2.29
3772 8652 5.075858 TCGGTGGAATAGTTCGTTGTATT 57.924 39.130 0.00 0.00 0.00 1.89
3773 8653 4.865925 TCGGTGGAATAGTTCGTTGTATTG 59.134 41.667 0.00 0.00 0.00 1.90
3774 8654 4.493545 CGGTGGAATAGTTCGTTGTATTGC 60.494 45.833 0.00 0.00 0.00 3.56
3775 8655 4.634443 GGTGGAATAGTTCGTTGTATTGCT 59.366 41.667 0.00 0.00 30.55 3.91
3776 8656 5.123344 GGTGGAATAGTTCGTTGTATTGCTT 59.877 40.000 0.00 0.00 30.55 3.91
3777 8657 6.021596 GTGGAATAGTTCGTTGTATTGCTTG 58.978 40.000 0.00 0.00 30.55 4.01
3778 8658 5.935206 TGGAATAGTTCGTTGTATTGCTTGA 59.065 36.000 0.00 0.00 30.55 3.02
3779 8659 6.092122 TGGAATAGTTCGTTGTATTGCTTGAG 59.908 38.462 0.00 0.00 30.55 3.02
3780 8660 3.813529 AGTTCGTTGTATTGCTTGAGC 57.186 42.857 0.00 0.00 42.50 4.26
3781 8661 2.484264 AGTTCGTTGTATTGCTTGAGCC 59.516 45.455 0.00 0.00 41.18 4.70
3782 8662 2.472695 TCGTTGTATTGCTTGAGCCT 57.527 45.000 0.00 0.00 41.18 4.58
3783 8663 2.076100 TCGTTGTATTGCTTGAGCCTG 58.924 47.619 0.00 0.00 41.18 4.85
3784 8664 1.131126 CGTTGTATTGCTTGAGCCTGG 59.869 52.381 0.00 0.00 41.18 4.45
3785 8665 2.162681 GTTGTATTGCTTGAGCCTGGT 58.837 47.619 0.00 0.00 41.18 4.00
3786 8666 1.825090 TGTATTGCTTGAGCCTGGTG 58.175 50.000 0.00 0.00 41.18 4.17
3787 8667 1.098050 GTATTGCTTGAGCCTGGTGG 58.902 55.000 0.00 0.00 41.18 4.61
3788 8668 0.034186 TATTGCTTGAGCCTGGTGGG 60.034 55.000 0.00 0.00 41.18 4.61
3802 8682 5.815233 CCTGGTGGGCATATATATAGGAG 57.185 47.826 8.56 0.00 0.00 3.69
3803 8683 5.219739 CCTGGTGGGCATATATATAGGAGT 58.780 45.833 8.56 0.00 0.00 3.85
3804 8684 6.382087 CCTGGTGGGCATATATATAGGAGTA 58.618 44.000 8.56 0.00 0.00 2.59
3805 8685 6.267928 CCTGGTGGGCATATATATAGGAGTAC 59.732 46.154 8.56 3.44 0.00 2.73
3806 8686 6.747931 TGGTGGGCATATATATAGGAGTACA 58.252 40.000 8.56 0.00 0.00 2.90
3807 8687 7.193338 TGGTGGGCATATATATAGGAGTACAA 58.807 38.462 8.56 0.00 0.00 2.41
3808 8688 7.849389 TGGTGGGCATATATATAGGAGTACAAT 59.151 37.037 8.56 0.00 0.00 2.71
3809 8689 8.150945 GGTGGGCATATATATAGGAGTACAATG 58.849 40.741 8.56 0.00 0.00 2.82
3810 8690 8.924303 GTGGGCATATATATAGGAGTACAATGA 58.076 37.037 8.56 0.00 0.00 2.57
3811 8691 8.924303 TGGGCATATATATAGGAGTACAATGAC 58.076 37.037 8.56 0.00 0.00 3.06
3812 8692 8.368668 GGGCATATATATAGGAGTACAATGACC 58.631 40.741 8.56 2.41 33.14 4.02
3813 8693 8.924303 GGCATATATATAGGAGTACAATGACCA 58.076 37.037 8.56 0.00 0.00 4.02
3819 8699 4.021102 AGGAGTACAATGACCAACTTGG 57.979 45.455 6.24 6.24 45.02 3.61
3820 8700 3.650942 AGGAGTACAATGACCAACTTGGA 59.349 43.478 15.14 0.00 40.96 3.53
3821 8701 4.003648 GGAGTACAATGACCAACTTGGAG 58.996 47.826 15.14 1.90 40.96 3.86
3822 8702 4.505039 GGAGTACAATGACCAACTTGGAGT 60.505 45.833 15.14 7.19 40.96 3.85
3823 8703 5.279809 GGAGTACAATGACCAACTTGGAGTA 60.280 44.000 15.14 6.34 40.96 2.59
3824 8704 5.548406 AGTACAATGACCAACTTGGAGTAC 58.452 41.667 15.14 15.66 40.96 2.73
3825 8705 4.431416 ACAATGACCAACTTGGAGTACA 57.569 40.909 15.14 8.96 40.96 2.90
3826 8706 4.787551 ACAATGACCAACTTGGAGTACAA 58.212 39.130 15.14 0.00 40.96 2.41
3837 8717 4.884668 TTGGAGTACAAGACAAGGTAGG 57.115 45.455 0.00 0.00 33.18 3.18
3838 8718 4.122337 TGGAGTACAAGACAAGGTAGGA 57.878 45.455 0.00 0.00 0.00 2.94
3839 8719 4.485875 TGGAGTACAAGACAAGGTAGGAA 58.514 43.478 0.00 0.00 0.00 3.36
3840 8720 4.282703 TGGAGTACAAGACAAGGTAGGAAC 59.717 45.833 0.00 0.00 0.00 3.62
3841 8721 4.282703 GGAGTACAAGACAAGGTAGGAACA 59.717 45.833 0.00 0.00 0.00 3.18
3842 8722 5.221581 GGAGTACAAGACAAGGTAGGAACAA 60.222 44.000 0.00 0.00 0.00 2.83
3843 8723 6.243216 AGTACAAGACAAGGTAGGAACAAA 57.757 37.500 0.00 0.00 0.00 2.83
3844 8724 6.838382 AGTACAAGACAAGGTAGGAACAAAT 58.162 36.000 0.00 0.00 0.00 2.32
3845 8725 6.935208 AGTACAAGACAAGGTAGGAACAAATC 59.065 38.462 0.00 0.00 0.00 2.17
3862 8742 9.536510 GGAACAAATCCTAGTCTATCCTATACT 57.463 37.037 0.00 0.00 45.56 2.12
3865 8745 9.536510 ACAAATCCTAGTCTATCCTATACTTCC 57.463 37.037 0.00 0.00 0.00 3.46
3866 8746 9.762381 CAAATCCTAGTCTATCCTATACTTCCT 57.238 37.037 0.00 0.00 0.00 3.36
3905 8785 9.601217 ACTCAACATTACTAATCTTACATCCAC 57.399 33.333 0.00 0.00 0.00 4.02
3906 8786 9.599866 CTCAACATTACTAATCTTACATCCACA 57.400 33.333 0.00 0.00 0.00 4.17
3907 8787 9.952030 TCAACATTACTAATCTTACATCCACAA 57.048 29.630 0.00 0.00 0.00 3.33
4008 8889 9.638239 TTTCATCTTTGCTGGTTAAATGTATTC 57.362 29.630 0.00 0.00 0.00 1.75
4118 9390 8.068380 CGAGCTTAAGCATAATTTTAGGTAACC 58.932 37.037 28.39 0.00 45.16 2.85
4509 10088 6.046290 TGATTGGTCAGATGGATATGCTAG 57.954 41.667 0.00 0.00 0.00 3.42
4514 10093 4.562347 GGTCAGATGGATATGCTAGTGTGG 60.562 50.000 0.00 0.00 0.00 4.17
4651 10235 4.095782 TGCTATTTTTGTGGCTACGAATCC 59.904 41.667 3.42 0.00 30.46 3.01
4653 10237 5.392595 GCTATTTTTGTGGCTACGAATCCAA 60.393 40.000 3.42 0.00 33.57 3.53
4655 10239 1.448985 TTGTGGCTACGAATCCAAGC 58.551 50.000 0.00 0.00 33.57 4.01
4657 10241 0.739813 GTGGCTACGAATCCAAGCGT 60.740 55.000 0.00 0.00 43.86 5.07
4658 10242 0.739462 TGGCTACGAATCCAAGCGTG 60.739 55.000 0.00 0.00 41.35 5.34
4659 10243 0.459585 GGCTACGAATCCAAGCGTGA 60.460 55.000 0.00 0.00 41.35 4.35
4663 10262 2.900122 ACGAATCCAAGCGTGATTTG 57.100 45.000 0.00 6.42 39.56 2.32
4683 10283 2.036217 TGTAAGTTGTCCCCTGTACACG 59.964 50.000 0.00 0.00 0.00 4.49
4729 10460 2.742774 GCATTTGGCTTTGAACTTCGT 58.257 42.857 0.00 0.00 40.25 3.85
4805 10588 1.804151 TGTTGTAATGCCGAGTGCTTC 59.196 47.619 0.00 0.00 42.00 3.86
4934 11744 5.758790 AAGACCTTTTAACTACTCCCTCC 57.241 43.478 0.00 0.00 0.00 4.30
4935 11745 3.768215 AGACCTTTTAACTACTCCCTCCG 59.232 47.826 0.00 0.00 0.00 4.63
4936 11746 3.513119 GACCTTTTAACTACTCCCTCCGT 59.487 47.826 0.00 0.00 0.00 4.69
4950 11796 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4951 11797 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4953 11799 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4954 11800 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4955 11801 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
4956 11802 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
4972 11818 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
4973 11819 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
4974 11820 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
4975 11821 8.254508 GTCTTTGTAGAGATTCCACTATGAACT 58.745 37.037 0.00 0.00 0.00 3.01
4976 11822 9.475620 TCTTTGTAGAGATTCCACTATGAACTA 57.524 33.333 0.00 0.00 0.00 2.24
4977 11823 9.522804 CTTTGTAGAGATTCCACTATGAACTAC 57.477 37.037 0.00 0.00 0.00 2.73
4979 11825 8.768501 TGTAGAGATTCCACTATGAACTACAT 57.231 34.615 0.00 0.00 42.39 2.29
4980 11826 9.862149 TGTAGAGATTCCACTATGAACTACATA 57.138 33.333 0.00 0.00 40.07 2.29
4983 11829 6.982852 AGATTCCACTATGAACTACATACGG 58.017 40.000 0.00 0.00 40.07 4.02
4984 11830 6.776116 AGATTCCACTATGAACTACATACGGA 59.224 38.462 0.00 0.00 40.07 4.69
4985 11831 6.971726 TTCCACTATGAACTACATACGGAT 57.028 37.500 0.00 0.00 37.58 4.18
4988 11834 6.999871 TCCACTATGAACTACATACGGATGTA 59.000 38.462 19.32 19.32 44.77 2.29
4989 11835 7.668469 TCCACTATGAACTACATACGGATGTAT 59.332 37.037 20.64 7.28 45.42 2.29
4990 11836 8.953313 CCACTATGAACTACATACGGATGTATA 58.047 37.037 20.64 10.04 45.42 1.47
4997 11843 9.666626 GAACTACATACGGATGTATATAGATGC 57.333 37.037 20.64 0.00 45.42 3.91
4998 11844 8.747538 ACTACATACGGATGTATATAGATGCA 57.252 34.615 20.64 0.00 45.42 3.96
4999 11845 9.355916 ACTACATACGGATGTATATAGATGCAT 57.644 33.333 20.64 0.00 45.42 3.96
5002 11848 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
5006 11852 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
5007 11853 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
5017 11863 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
5028 11874 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
5029 11875 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
5030 11876 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
5031 11877 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5032 11878 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5033 11879 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
5034 11880 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5035 11881 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5036 11882 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
5037 11883 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
5038 11884 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
5039 11885 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
5040 11886 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
5041 11887 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
5042 11888 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
5043 11889 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
5044 11890 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
5045 11891 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
5046 11892 2.545952 GCTCCGTATGTGGTCCATAGTG 60.546 54.545 0.00 0.00 36.71 2.74
5047 11893 2.956333 CTCCGTATGTGGTCCATAGTGA 59.044 50.000 0.00 0.00 36.71 3.41
5048 11894 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
5049 11895 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
5050 11896 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
5051 11897 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
5052 11898 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
5053 11899 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
5054 11900 5.965033 ATGTGGTCCATAGTGAAATCTCT 57.035 39.130 0.00 0.00 29.82 3.10
5055 11901 5.344743 TGTGGTCCATAGTGAAATCTCTC 57.655 43.478 0.00 0.00 0.00 3.20
5056 11902 4.162320 TGTGGTCCATAGTGAAATCTCTCC 59.838 45.833 0.00 0.00 0.00 3.71
5057 11903 4.162320 GTGGTCCATAGTGAAATCTCTCCA 59.838 45.833 0.00 0.00 0.00 3.86
5058 11904 4.782691 TGGTCCATAGTGAAATCTCTCCAA 59.217 41.667 0.00 0.00 0.00 3.53
5059 11905 5.250543 TGGTCCATAGTGAAATCTCTCCAAA 59.749 40.000 0.00 0.00 0.00 3.28
5060 11906 5.819901 GGTCCATAGTGAAATCTCTCCAAAG 59.180 44.000 0.00 0.00 0.00 2.77
5061 11907 6.352222 GGTCCATAGTGAAATCTCTCCAAAGA 60.352 42.308 0.00 0.00 0.00 2.52
5062 11908 6.536941 GTCCATAGTGAAATCTCTCCAAAGAC 59.463 42.308 0.00 0.00 0.00 3.01
5063 11909 6.441924 TCCATAGTGAAATCTCTCCAAAGACT 59.558 38.462 0.00 0.00 0.00 3.24
5064 11910 7.038017 TCCATAGTGAAATCTCTCCAAAGACTT 60.038 37.037 0.00 0.00 0.00 3.01
5065 11911 8.260818 CCATAGTGAAATCTCTCCAAAGACTTA 58.739 37.037 0.00 0.00 0.00 2.24
5066 11912 9.829507 CATAGTGAAATCTCTCCAAAGACTTAT 57.170 33.333 0.00 0.00 0.00 1.73
5077 11923 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
5078 11924 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
5079 11925 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
5080 11926 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
5081 11927 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
5082 11928 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5083 11929 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5084 11930 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 4.179926 TCAACCATCTCTTTCTCGACTG 57.820 45.455 0.00 0.00 0.00 3.51
122 123 8.721478 TCTTTTTATTCAACCATCTCTTTCTCG 58.279 33.333 0.00 0.00 0.00 4.04
218 261 1.940613 ACTTGCGTGAAGGACACTTTC 59.059 47.619 0.00 0.00 46.24 2.62
222 265 1.400494 ACAAACTTGCGTGAAGGACAC 59.600 47.619 0.00 0.00 45.11 3.67
232 275 4.324402 GCATAGGAATCAAACAAACTTGCG 59.676 41.667 0.00 0.00 0.00 4.85
287 330 2.514458 AGTGGTTGGCCTTCCTATTG 57.486 50.000 3.32 0.00 35.27 1.90
318 361 7.399478 CCCTATATTTAGAAACGGAGGGAGTAT 59.601 40.741 9.77 0.00 44.48 2.12
319 362 6.723052 CCCTATATTTAGAAACGGAGGGAGTA 59.277 42.308 9.77 0.00 44.48 2.59
320 363 5.543020 CCCTATATTTAGAAACGGAGGGAGT 59.457 44.000 9.77 0.00 44.48 3.85
321 364 5.543020 ACCCTATATTTAGAAACGGAGGGAG 59.457 44.000 17.69 1.07 44.48 4.30
322 365 5.306160 CACCCTATATTTAGAAACGGAGGGA 59.694 44.000 17.69 0.00 44.48 4.20
323 366 5.071384 ACACCCTATATTTAGAAACGGAGGG 59.929 44.000 12.35 12.35 46.66 4.30
324 367 6.170846 ACACCCTATATTTAGAAACGGAGG 57.829 41.667 0.00 0.00 0.00 4.30
326 369 9.592196 ACTATACACCCTATATTTAGAAACGGA 57.408 33.333 0.00 0.00 0.00 4.69
335 378 8.909923 GTGCCAAAAACTATACACCCTATATTT 58.090 33.333 0.00 0.00 0.00 1.40
336 379 7.227910 CGTGCCAAAAACTATACACCCTATATT 59.772 37.037 0.00 0.00 0.00 1.28
337 380 6.708949 CGTGCCAAAAACTATACACCCTATAT 59.291 38.462 0.00 0.00 0.00 0.86
338 381 6.050432 CGTGCCAAAAACTATACACCCTATA 58.950 40.000 0.00 0.00 0.00 1.31
339 382 4.879545 CGTGCCAAAAACTATACACCCTAT 59.120 41.667 0.00 0.00 0.00 2.57
340 383 4.020396 TCGTGCCAAAAACTATACACCCTA 60.020 41.667 0.00 0.00 0.00 3.53
341 384 3.078837 CGTGCCAAAAACTATACACCCT 58.921 45.455 0.00 0.00 0.00 4.34
342 385 3.075884 TCGTGCCAAAAACTATACACCC 58.924 45.455 0.00 0.00 0.00 4.61
343 386 4.752661 TTCGTGCCAAAAACTATACACC 57.247 40.909 0.00 0.00 0.00 4.16
344 387 7.631915 AATTTTCGTGCCAAAAACTATACAC 57.368 32.000 0.00 0.00 0.00 2.90
345 388 9.745880 TTTAATTTTCGTGCCAAAAACTATACA 57.254 25.926 0.00 0.00 0.00 2.29
348 391 9.535878 TTCTTTAATTTTCGTGCCAAAAACTAT 57.464 25.926 0.00 0.00 0.00 2.12
349 392 8.928270 TTCTTTAATTTTCGTGCCAAAAACTA 57.072 26.923 0.00 0.00 0.00 2.24
350 393 7.835634 TTCTTTAATTTTCGTGCCAAAAACT 57.164 28.000 0.00 0.00 0.00 2.66
351 394 7.111455 GCATTCTTTAATTTTCGTGCCAAAAAC 59.889 33.333 0.00 0.00 0.00 2.43
352 395 7.128976 GCATTCTTTAATTTTCGTGCCAAAAA 58.871 30.769 0.00 0.00 0.00 1.94
353 396 6.258727 TGCATTCTTTAATTTTCGTGCCAAAA 59.741 30.769 0.00 0.00 0.00 2.44
354 397 5.755375 TGCATTCTTTAATTTTCGTGCCAAA 59.245 32.000 0.00 0.00 0.00 3.28
355 398 5.176590 GTGCATTCTTTAATTTTCGTGCCAA 59.823 36.000 0.00 0.00 0.00 4.52
356 399 4.683781 GTGCATTCTTTAATTTTCGTGCCA 59.316 37.500 0.00 0.00 0.00 4.92
357 400 4.201485 CGTGCATTCTTTAATTTTCGTGCC 60.201 41.667 0.00 0.00 0.00 5.01
358 401 4.381566 ACGTGCATTCTTTAATTTTCGTGC 59.618 37.500 0.00 0.00 0.00 5.34
359 402 5.623264 TCACGTGCATTCTTTAATTTTCGTG 59.377 36.000 11.67 10.30 38.93 4.35
360 403 5.753744 TCACGTGCATTCTTTAATTTTCGT 58.246 33.333 11.67 0.00 0.00 3.85
361 404 6.183359 CCTTCACGTGCATTCTTTAATTTTCG 60.183 38.462 11.67 0.00 0.00 3.46
362 405 6.089417 CCCTTCACGTGCATTCTTTAATTTTC 59.911 38.462 11.67 0.00 0.00 2.29
363 406 5.925969 CCCTTCACGTGCATTCTTTAATTTT 59.074 36.000 11.67 0.00 0.00 1.82
364 407 5.242838 TCCCTTCACGTGCATTCTTTAATTT 59.757 36.000 11.67 0.00 0.00 1.82
365 408 4.764823 TCCCTTCACGTGCATTCTTTAATT 59.235 37.500 11.67 0.00 0.00 1.40
366 409 4.331968 TCCCTTCACGTGCATTCTTTAAT 58.668 39.130 11.67 0.00 0.00 1.40
367 410 3.745799 TCCCTTCACGTGCATTCTTTAA 58.254 40.909 11.67 0.00 0.00 1.52
368 411 3.410631 TCCCTTCACGTGCATTCTTTA 57.589 42.857 11.67 0.00 0.00 1.85
369 412 2.270352 TCCCTTCACGTGCATTCTTT 57.730 45.000 11.67 0.00 0.00 2.52
370 413 2.270352 TTCCCTTCACGTGCATTCTT 57.730 45.000 11.67 0.00 0.00 2.52
371 414 2.270352 TTTCCCTTCACGTGCATTCT 57.730 45.000 11.67 0.00 0.00 2.40
372 415 3.575965 ATTTTCCCTTCACGTGCATTC 57.424 42.857 11.67 0.00 0.00 2.67
373 416 4.202202 TGAAATTTTCCCTTCACGTGCATT 60.202 37.500 11.67 0.00 0.00 3.56
374 417 3.320541 TGAAATTTTCCCTTCACGTGCAT 59.679 39.130 11.67 0.00 0.00 3.96
375 418 2.690497 TGAAATTTTCCCTTCACGTGCA 59.310 40.909 11.67 0.00 0.00 4.57
376 419 3.049912 GTGAAATTTTCCCTTCACGTGC 58.950 45.455 11.67 0.00 41.33 5.34
380 423 4.830826 ACTCGTGAAATTTTCCCTTCAC 57.169 40.909 6.68 5.13 45.18 3.18
381 424 5.845391 AAACTCGTGAAATTTTCCCTTCA 57.155 34.783 6.68 0.00 0.00 3.02
382 425 6.270064 TCAAAACTCGTGAAATTTTCCCTTC 58.730 36.000 6.68 0.00 0.00 3.46
383 426 6.127451 ACTCAAAACTCGTGAAATTTTCCCTT 60.127 34.615 6.68 0.00 0.00 3.95
384 427 5.359860 ACTCAAAACTCGTGAAATTTTCCCT 59.640 36.000 6.68 0.00 0.00 4.20
385 428 5.458779 CACTCAAAACTCGTGAAATTTTCCC 59.541 40.000 6.68 0.00 0.00 3.97
386 429 6.262601 TCACTCAAAACTCGTGAAATTTTCC 58.737 36.000 6.68 0.00 34.99 3.13
387 430 7.186804 TCTCACTCAAAACTCGTGAAATTTTC 58.813 34.615 2.05 2.05 37.24 2.29
388 431 7.083875 TCTCACTCAAAACTCGTGAAATTTT 57.916 32.000 0.00 0.00 37.24 1.82
389 432 6.677781 TCTCACTCAAAACTCGTGAAATTT 57.322 33.333 0.00 0.00 37.24 1.82
390 433 6.867662 ATCTCACTCAAAACTCGTGAAATT 57.132 33.333 0.00 0.00 37.24 1.82
391 434 6.867662 AATCTCACTCAAAACTCGTGAAAT 57.132 33.333 0.00 0.00 37.24 2.17
392 435 6.759356 TGTAATCTCACTCAAAACTCGTGAAA 59.241 34.615 0.00 0.00 37.24 2.69
393 436 6.200286 GTGTAATCTCACTCAAAACTCGTGAA 59.800 38.462 0.00 0.00 37.24 3.18
394 437 5.690409 GTGTAATCTCACTCAAAACTCGTGA 59.310 40.000 0.00 0.00 36.37 4.35
395 438 5.107453 GGTGTAATCTCACTCAAAACTCGTG 60.107 44.000 0.00 0.00 38.28 4.35
396 439 4.989168 GGTGTAATCTCACTCAAAACTCGT 59.011 41.667 0.00 0.00 38.28 4.18
397 440 5.230942 AGGTGTAATCTCACTCAAAACTCG 58.769 41.667 0.00 0.00 38.28 4.18
398 441 7.873505 AGTTAGGTGTAATCTCACTCAAAACTC 59.126 37.037 0.00 0.00 38.28 3.01
399 442 7.736893 AGTTAGGTGTAATCTCACTCAAAACT 58.263 34.615 0.00 0.00 38.28 2.66
400 443 7.964604 AGTTAGGTGTAATCTCACTCAAAAC 57.035 36.000 0.00 0.00 38.28 2.43
403 446 9.653287 CAATTAGTTAGGTGTAATCTCACTCAA 57.347 33.333 0.00 0.00 38.28 3.02
404 447 9.031537 TCAATTAGTTAGGTGTAATCTCACTCA 57.968 33.333 0.00 0.00 38.28 3.41
405 448 9.303537 GTCAATTAGTTAGGTGTAATCTCACTC 57.696 37.037 0.00 0.00 38.28 3.51
406 449 8.812972 TGTCAATTAGTTAGGTGTAATCTCACT 58.187 33.333 0.00 0.00 38.28 3.41
407 450 8.997621 TGTCAATTAGTTAGGTGTAATCTCAC 57.002 34.615 0.00 0.00 37.57 3.51
408 451 9.599866 CATGTCAATTAGTTAGGTGTAATCTCA 57.400 33.333 0.00 0.00 0.00 3.27
409 452 9.817809 TCATGTCAATTAGTTAGGTGTAATCTC 57.182 33.333 0.00 0.00 0.00 2.75
410 453 9.823647 CTCATGTCAATTAGTTAGGTGTAATCT 57.176 33.333 0.00 0.00 0.00 2.40
411 454 9.817809 TCTCATGTCAATTAGTTAGGTGTAATC 57.182 33.333 0.00 0.00 0.00 1.75
415 458 8.918202 TTTTCTCATGTCAATTAGTTAGGTGT 57.082 30.769 0.00 0.00 0.00 4.16
427 470 8.292448 GCAAACTTCTCTATTTTCTCATGTCAA 58.708 33.333 0.00 0.00 0.00 3.18
428 471 7.094634 GGCAAACTTCTCTATTTTCTCATGTCA 60.095 37.037 0.00 0.00 0.00 3.58
429 472 7.120432 AGGCAAACTTCTCTATTTTCTCATGTC 59.880 37.037 0.00 0.00 0.00 3.06
430 473 6.944862 AGGCAAACTTCTCTATTTTCTCATGT 59.055 34.615 0.00 0.00 0.00 3.21
431 474 7.388460 AGGCAAACTTCTCTATTTTCTCATG 57.612 36.000 0.00 0.00 0.00 3.07
432 475 9.692325 ATTAGGCAAACTTCTCTATTTTCTCAT 57.308 29.630 0.00 0.00 0.00 2.90
485 528 6.811253 TGCACCACTCGTTTAGATATTTTT 57.189 33.333 0.00 0.00 0.00 1.94
486 529 6.608610 GTTGCACCACTCGTTTAGATATTTT 58.391 36.000 0.00 0.00 0.00 1.82
487 530 5.163893 CGTTGCACCACTCGTTTAGATATTT 60.164 40.000 0.00 0.00 0.00 1.40
488 531 4.328983 CGTTGCACCACTCGTTTAGATATT 59.671 41.667 0.00 0.00 0.00 1.28
489 532 3.863424 CGTTGCACCACTCGTTTAGATAT 59.137 43.478 0.00 0.00 0.00 1.63
490 533 3.247442 CGTTGCACCACTCGTTTAGATA 58.753 45.455 0.00 0.00 0.00 1.98
491 534 2.066262 CGTTGCACCACTCGTTTAGAT 58.934 47.619 0.00 0.00 0.00 1.98
492 535 1.493772 CGTTGCACCACTCGTTTAGA 58.506 50.000 0.00 0.00 0.00 2.10
493 536 0.110823 GCGTTGCACCACTCGTTTAG 60.111 55.000 0.00 0.00 0.00 1.85
494 537 0.810426 TGCGTTGCACCACTCGTTTA 60.810 50.000 0.00 0.00 31.71 2.01
495 538 1.649390 TTGCGTTGCACCACTCGTTT 61.649 50.000 0.00 0.00 38.71 3.60
496 539 1.444119 ATTGCGTTGCACCACTCGTT 61.444 50.000 0.00 0.00 38.71 3.85
497 540 0.601576 TATTGCGTTGCACCACTCGT 60.602 50.000 0.00 0.00 38.71 4.18
498 541 0.179225 GTATTGCGTTGCACCACTCG 60.179 55.000 0.00 0.00 38.71 4.18
499 542 0.871722 TGTATTGCGTTGCACCACTC 59.128 50.000 0.00 0.00 38.71 3.51
500 543 0.591170 GTGTATTGCGTTGCACCACT 59.409 50.000 0.00 0.00 38.71 4.00
501 544 3.086161 GTGTATTGCGTTGCACCAC 57.914 52.632 0.00 0.00 38.71 4.16
503 546 4.859784 GGTGTATTGCGTTGCACC 57.140 55.556 9.58 9.58 43.52 5.01
504 547 3.757745 ATAAGGTGTATTGCGTTGCAC 57.242 42.857 0.00 0.00 38.71 4.57
505 548 6.443934 AAATATAAGGTGTATTGCGTTGCA 57.556 33.333 0.00 0.00 36.47 4.08
506 549 8.339714 TCTAAAATATAAGGTGTATTGCGTTGC 58.660 33.333 0.00 0.00 0.00 4.17
548 591 9.837681 TCCATTCCTTGATATAAGGTGTATAGA 57.162 33.333 5.67 0.00 38.55 1.98
551 594 8.742125 TCTCCATTCCTTGATATAAGGTGTAT 57.258 34.615 5.67 0.00 38.55 2.29
552 595 8.010697 TCTCTCCATTCCTTGATATAAGGTGTA 58.989 37.037 5.67 0.00 38.55 2.90
555 598 7.079048 ACTCTCTCCATTCCTTGATATAAGGT 58.921 38.462 5.67 0.00 38.55 3.50
556 599 7.552050 ACTCTCTCCATTCCTTGATATAAGG 57.448 40.000 0.00 0.00 38.78 2.69
563 606 6.627087 ACAAATACTCTCTCCATTCCTTGA 57.373 37.500 0.00 0.00 0.00 3.02
564 607 7.175641 ACAAACAAATACTCTCTCCATTCCTTG 59.824 37.037 0.00 0.00 0.00 3.61
566 609 6.784031 ACAAACAAATACTCTCTCCATTCCT 58.216 36.000 0.00 0.00 0.00 3.36
567 610 6.881602 AGACAAACAAATACTCTCTCCATTCC 59.118 38.462 0.00 0.00 0.00 3.01
568 611 7.389053 ACAGACAAACAAATACTCTCTCCATTC 59.611 37.037 0.00 0.00 0.00 2.67
570 613 6.773638 ACAGACAAACAAATACTCTCTCCAT 58.226 36.000 0.00 0.00 0.00 3.41
571 614 6.174720 ACAGACAAACAAATACTCTCTCCA 57.825 37.500 0.00 0.00 0.00 3.86
574 617 5.692204 CACGACAGACAAACAAATACTCTCT 59.308 40.000 0.00 0.00 0.00 3.10
575 618 5.690409 TCACGACAGACAAACAAATACTCTC 59.310 40.000 0.00 0.00 0.00 3.20
576 619 5.597806 TCACGACAGACAAACAAATACTCT 58.402 37.500 0.00 0.00 0.00 3.24
577 620 5.900339 TCACGACAGACAAACAAATACTC 57.100 39.130 0.00 0.00 0.00 2.59
607 650 2.058595 ACCTTCACGGCCTAGCGAT 61.059 57.895 0.00 0.00 35.61 4.58
622 665 1.564348 GATCACCATTACCCCACACCT 59.436 52.381 0.00 0.00 0.00 4.00
625 668 1.065782 CGTGATCACCATTACCCCACA 60.066 52.381 20.03 0.00 0.00 4.17
633 676 2.356135 GCCACTAACGTGATCACCATT 58.644 47.619 20.03 16.08 43.97 3.16
638 682 1.447140 GCCGCCACTAACGTGATCA 60.447 57.895 0.00 0.00 43.97 2.92
668 712 3.457610 ACAAAGCCCACACATCAAAAG 57.542 42.857 0.00 0.00 0.00 2.27
682 726 0.179124 TGGCCACGACAAAACAAAGC 60.179 50.000 0.00 0.00 0.00 3.51
711 755 1.002857 AGCAAGATTTAGGCCACCCT 58.997 50.000 5.01 0.00 45.61 4.34
729 773 1.813513 AGATTCAACGGTCAGCCAAG 58.186 50.000 0.00 0.00 34.09 3.61
768 814 9.899226 AAATAGTAGTGCAAGATTTTCAGTTTC 57.101 29.630 0.00 0.00 0.00 2.78
783 835 6.636850 CACAGAACCAACAAAAATAGTAGTGC 59.363 38.462 0.00 0.00 0.00 4.40
784 836 6.636850 GCACAGAACCAACAAAAATAGTAGTG 59.363 38.462 0.00 0.00 0.00 2.74
815 867 7.523293 TTGATTGATTTTCAGAAGCTAACCA 57.477 32.000 0.00 0.00 0.00 3.67
850 938 4.092968 ACCAGAACGCATAAACGAAGATTC 59.907 41.667 0.00 0.00 36.70 2.52
966 1088 1.529244 GTGGAAACAGCAGCCCAGT 60.529 57.895 0.00 0.00 44.46 4.00
1002 1999 0.527385 GGCTCATCTCGTCACAGCTC 60.527 60.000 0.00 0.00 0.00 4.09
1240 2254 2.437413 GAAGCCCTCGAAGAAACCAAT 58.563 47.619 0.00 0.00 34.09 3.16
1472 6010 0.035439 CACCGCCCCACTGATAAAGT 60.035 55.000 0.00 0.00 40.93 2.66
1631 6178 2.593026 TGGTGGGAAGTTTGGATGAAC 58.407 47.619 0.00 0.00 0.00 3.18
1780 6387 2.224606 CTTGGCAATATCGACTGGCAT 58.775 47.619 17.39 0.00 46.16 4.40
2152 6876 2.469274 AATGGATGATAGCGAGCCAG 57.531 50.000 0.00 0.00 31.23 4.85
2295 7081 5.343307 AAAGGAACAATTCATATGGCACC 57.657 39.130 2.13 0.00 0.00 5.01
2296 7082 5.063817 GCAAAAGGAACAATTCATATGGCAC 59.936 40.000 2.13 0.00 0.00 5.01
2297 7083 5.046448 AGCAAAAGGAACAATTCATATGGCA 60.046 36.000 2.13 0.00 0.00 4.92
2473 7264 6.980051 AGGGAACTAAAAATGACGATACAC 57.020 37.500 0.00 0.00 40.61 2.90
2475 7266 6.373495 ACCAAGGGAACTAAAAATGACGATAC 59.627 38.462 0.00 0.00 42.68 2.24
2482 7273 7.477144 GTTTGAACCAAGGGAACTAAAAATG 57.523 36.000 0.00 0.00 42.68 2.32
2502 7293 1.966451 GAGGTCCACAGCCGGTTTG 60.966 63.158 1.90 4.77 0.00 2.93
2510 7301 2.638480 TTGACAAAGGAGGTCCACAG 57.362 50.000 0.00 0.00 38.89 3.66
2591 7393 4.728772 TCACACCTCTGATTCAAACCATT 58.271 39.130 0.00 0.00 0.00 3.16
2792 7598 6.492254 AGTTGTCTCAATTTCCAAACGTAAC 58.508 36.000 0.00 0.00 0.00 2.50
2794 7635 6.762187 TGTAGTTGTCTCAATTTCCAAACGTA 59.238 34.615 0.00 0.00 0.00 3.57
2836 7681 3.961480 TCGACATCTCACTTGGTTCAT 57.039 42.857 0.00 0.00 0.00 2.57
2930 7776 6.923012 TCAAACCAAGTCATTATTGTGGATG 58.077 36.000 0.00 0.00 33.39 3.51
2945 7792 1.094785 CCCACGCCTATCAAACCAAG 58.905 55.000 0.00 0.00 0.00 3.61
2946 7793 0.693622 TCCCACGCCTATCAAACCAA 59.306 50.000 0.00 0.00 0.00 3.67
2947 7794 0.035820 GTCCCACGCCTATCAAACCA 60.036 55.000 0.00 0.00 0.00 3.67
2948 7795 1.087771 CGTCCCACGCCTATCAAACC 61.088 60.000 0.00 0.00 33.65 3.27
2949 7796 2.380081 CGTCCCACGCCTATCAAAC 58.620 57.895 0.00 0.00 33.65 2.93
2950 7797 4.924019 CGTCCCACGCCTATCAAA 57.076 55.556 0.00 0.00 33.65 2.69
3240 8087 4.770362 TGCATCTCCCCGACCCGA 62.770 66.667 0.00 0.00 0.00 5.14
3251 8098 2.607750 ACCGGGACACCTGCATCT 60.608 61.111 6.32 0.00 33.28 2.90
3343 8210 4.816984 GCCTCTCCTCCGACCCGA 62.817 72.222 0.00 0.00 0.00 5.14
3484 8353 2.902608 TGCTCCAGGGTTTTCTCTCTA 58.097 47.619 0.00 0.00 0.00 2.43
3586 8460 2.511600 GGCTTCCATGACCGTCGG 60.512 66.667 10.48 10.48 0.00 4.79
3589 8463 2.264794 GTCGGCTTCCATGACCGT 59.735 61.111 13.57 0.00 46.92 4.83
3675 8555 3.305720 ACCTCTTGGCTCGGATACATTA 58.694 45.455 0.00 0.00 36.63 1.90
3677 8557 1.689273 GACCTCTTGGCTCGGATACAT 59.311 52.381 0.00 0.00 36.63 2.29
3678 8558 1.112113 GACCTCTTGGCTCGGATACA 58.888 55.000 0.00 0.00 36.63 2.29
3711 8591 1.414181 ACATGGTATCCGAGCCAAGAG 59.586 52.381 0.00 0.04 38.38 2.85
3712 8592 1.496060 ACATGGTATCCGAGCCAAGA 58.504 50.000 0.00 0.00 38.38 3.02
3713 8593 2.332063 AACATGGTATCCGAGCCAAG 57.668 50.000 0.00 0.00 38.38 3.61
3714 8594 3.035363 TCTAACATGGTATCCGAGCCAA 58.965 45.455 0.00 0.00 38.38 4.52
3715 8595 2.673258 TCTAACATGGTATCCGAGCCA 58.327 47.619 0.00 0.00 39.33 4.75
3716 8596 3.555168 CCTTCTAACATGGTATCCGAGCC 60.555 52.174 0.00 0.00 0.00 4.70
3717 8597 3.555168 CCCTTCTAACATGGTATCCGAGC 60.555 52.174 0.00 0.00 0.00 5.03
3718 8598 3.895656 TCCCTTCTAACATGGTATCCGAG 59.104 47.826 0.00 0.00 0.00 4.63
3719 8599 3.895656 CTCCCTTCTAACATGGTATCCGA 59.104 47.826 0.00 0.00 0.00 4.55
3720 8600 3.895656 TCTCCCTTCTAACATGGTATCCG 59.104 47.826 0.00 0.00 0.00 4.18
3721 8601 5.148502 TCTCTCCCTTCTAACATGGTATCC 58.851 45.833 0.00 0.00 0.00 2.59
3722 8602 5.245075 CCTCTCTCCCTTCTAACATGGTATC 59.755 48.000 0.00 0.00 0.00 2.24
3723 8603 5.151454 CCTCTCTCCCTTCTAACATGGTAT 58.849 45.833 0.00 0.00 0.00 2.73
3724 8604 4.547671 CCTCTCTCCCTTCTAACATGGTA 58.452 47.826 0.00 0.00 0.00 3.25
3725 8605 3.379452 CCTCTCTCCCTTCTAACATGGT 58.621 50.000 0.00 0.00 0.00 3.55
3726 8606 2.703007 CCCTCTCTCCCTTCTAACATGG 59.297 54.545 0.00 0.00 0.00 3.66
3727 8607 3.647636 TCCCTCTCTCCCTTCTAACATG 58.352 50.000 0.00 0.00 0.00 3.21
3728 8608 4.567987 ATCCCTCTCTCCCTTCTAACAT 57.432 45.455 0.00 0.00 0.00 2.71
3729 8609 4.290942 GAATCCCTCTCTCCCTTCTAACA 58.709 47.826 0.00 0.00 0.00 2.41
3730 8610 3.319689 CGAATCCCTCTCTCCCTTCTAAC 59.680 52.174 0.00 0.00 0.00 2.34
3731 8611 3.567397 CGAATCCCTCTCTCCCTTCTAA 58.433 50.000 0.00 0.00 0.00 2.10
3732 8612 2.158445 CCGAATCCCTCTCTCCCTTCTA 60.158 54.545 0.00 0.00 0.00 2.10
3733 8613 1.412361 CCGAATCCCTCTCTCCCTTCT 60.412 57.143 0.00 0.00 0.00 2.85
3734 8614 1.044611 CCGAATCCCTCTCTCCCTTC 58.955 60.000 0.00 0.00 0.00 3.46
3735 8615 0.340208 ACCGAATCCCTCTCTCCCTT 59.660 55.000 0.00 0.00 0.00 3.95
3736 8616 0.397816 CACCGAATCCCTCTCTCCCT 60.398 60.000 0.00 0.00 0.00 4.20
3737 8617 1.403687 CCACCGAATCCCTCTCTCCC 61.404 65.000 0.00 0.00 0.00 4.30
3738 8618 0.397254 TCCACCGAATCCCTCTCTCC 60.397 60.000 0.00 0.00 0.00 3.71
3739 8619 1.486211 TTCCACCGAATCCCTCTCTC 58.514 55.000 0.00 0.00 0.00 3.20
3740 8620 2.182516 ATTCCACCGAATCCCTCTCT 57.817 50.000 0.00 0.00 33.15 3.10
3741 8621 2.966516 ACTATTCCACCGAATCCCTCTC 59.033 50.000 0.00 0.00 39.49 3.20
3742 8622 3.047695 ACTATTCCACCGAATCCCTCT 57.952 47.619 0.00 0.00 39.49 3.69
3743 8623 3.729966 GAACTATTCCACCGAATCCCTC 58.270 50.000 0.00 0.00 39.49 4.30
3744 8624 2.102588 CGAACTATTCCACCGAATCCCT 59.897 50.000 0.00 0.00 39.49 4.20
3745 8625 2.159000 ACGAACTATTCCACCGAATCCC 60.159 50.000 0.00 0.00 39.49 3.85
3746 8626 3.175109 ACGAACTATTCCACCGAATCC 57.825 47.619 0.00 0.00 39.49 3.01
3747 8627 3.930848 ACAACGAACTATTCCACCGAATC 59.069 43.478 0.00 0.00 39.49 2.52
3748 8628 3.934068 ACAACGAACTATTCCACCGAAT 58.066 40.909 0.00 0.00 41.67 3.34
3749 8629 3.389925 ACAACGAACTATTCCACCGAA 57.610 42.857 0.00 0.00 0.00 4.30
3750 8630 4.724074 ATACAACGAACTATTCCACCGA 57.276 40.909 0.00 0.00 0.00 4.69
3751 8631 4.493545 GCAATACAACGAACTATTCCACCG 60.494 45.833 0.00 0.00 0.00 4.94
3752 8632 4.634443 AGCAATACAACGAACTATTCCACC 59.366 41.667 0.00 0.00 0.00 4.61
3753 8633 5.796350 AGCAATACAACGAACTATTCCAC 57.204 39.130 0.00 0.00 0.00 4.02
3754 8634 5.935206 TCAAGCAATACAACGAACTATTCCA 59.065 36.000 0.00 0.00 0.00 3.53
3755 8635 6.417191 TCAAGCAATACAACGAACTATTCC 57.583 37.500 0.00 0.00 0.00 3.01
3756 8636 5.960105 GCTCAAGCAATACAACGAACTATTC 59.040 40.000 0.00 0.00 41.59 1.75
3757 8637 5.163754 GGCTCAAGCAATACAACGAACTATT 60.164 40.000 4.13 0.00 44.36 1.73
3758 8638 4.332819 GGCTCAAGCAATACAACGAACTAT 59.667 41.667 4.13 0.00 44.36 2.12
3759 8639 3.682858 GGCTCAAGCAATACAACGAACTA 59.317 43.478 4.13 0.00 44.36 2.24
3760 8640 2.484264 GGCTCAAGCAATACAACGAACT 59.516 45.455 4.13 0.00 44.36 3.01
3761 8641 2.484264 AGGCTCAAGCAATACAACGAAC 59.516 45.455 4.13 0.00 44.36 3.95
3762 8642 2.483877 CAGGCTCAAGCAATACAACGAA 59.516 45.455 4.13 0.00 44.36 3.85
3763 8643 2.076100 CAGGCTCAAGCAATACAACGA 58.924 47.619 4.13 0.00 44.36 3.85
3764 8644 1.131126 CCAGGCTCAAGCAATACAACG 59.869 52.381 4.13 0.00 44.36 4.10
3765 8645 2.095059 CACCAGGCTCAAGCAATACAAC 60.095 50.000 4.13 0.00 44.36 3.32
3766 8646 2.161855 CACCAGGCTCAAGCAATACAA 58.838 47.619 4.13 0.00 44.36 2.41
3767 8647 1.614051 CCACCAGGCTCAAGCAATACA 60.614 52.381 4.13 0.00 44.36 2.29
3768 8648 1.098050 CCACCAGGCTCAAGCAATAC 58.902 55.000 4.13 0.00 44.36 1.89
3769 8649 0.034186 CCCACCAGGCTCAAGCAATA 60.034 55.000 4.13 0.00 44.36 1.90
3770 8650 1.304713 CCCACCAGGCTCAAGCAAT 60.305 57.895 4.13 0.00 44.36 3.56
3771 8651 2.115910 CCCACCAGGCTCAAGCAA 59.884 61.111 4.13 0.00 44.36 3.91
3780 8660 5.219739 ACTCCTATATATATGCCCACCAGG 58.780 45.833 5.44 2.71 39.47 4.45
3781 8661 6.839134 TGTACTCCTATATATATGCCCACCAG 59.161 42.308 5.44 0.00 0.00 4.00
3782 8662 6.747931 TGTACTCCTATATATATGCCCACCA 58.252 40.000 5.44 0.00 0.00 4.17
3783 8663 7.670605 TTGTACTCCTATATATATGCCCACC 57.329 40.000 5.44 0.00 0.00 4.61
3784 8664 8.924303 TCATTGTACTCCTATATATATGCCCAC 58.076 37.037 5.44 0.00 0.00 4.61
3785 8665 8.924303 GTCATTGTACTCCTATATATATGCCCA 58.076 37.037 5.44 0.00 0.00 5.36
3786 8666 8.368668 GGTCATTGTACTCCTATATATATGCCC 58.631 40.741 5.44 0.00 0.00 5.36
3787 8667 8.924303 TGGTCATTGTACTCCTATATATATGCC 58.076 37.037 5.44 0.00 0.00 4.40
3793 8673 8.647796 CCAAGTTGGTCATTGTACTCCTATATA 58.352 37.037 14.21 0.00 31.35 0.86
3794 8674 7.347222 TCCAAGTTGGTCATTGTACTCCTATAT 59.653 37.037 21.35 0.00 39.03 0.86
3795 8675 6.670464 TCCAAGTTGGTCATTGTACTCCTATA 59.330 38.462 21.35 0.00 39.03 1.31
3796 8676 5.487488 TCCAAGTTGGTCATTGTACTCCTAT 59.513 40.000 21.35 0.00 39.03 2.57
3797 8677 4.841813 TCCAAGTTGGTCATTGTACTCCTA 59.158 41.667 21.35 0.00 39.03 2.94
3798 8678 3.650942 TCCAAGTTGGTCATTGTACTCCT 59.349 43.478 21.35 0.00 39.03 3.69
3799 8679 4.003648 CTCCAAGTTGGTCATTGTACTCC 58.996 47.826 21.35 0.00 39.03 3.85
3800 8680 4.642429 ACTCCAAGTTGGTCATTGTACTC 58.358 43.478 21.35 0.00 39.03 2.59
3801 8681 4.706842 ACTCCAAGTTGGTCATTGTACT 57.293 40.909 21.35 0.00 39.03 2.73
3802 8682 5.302360 TGTACTCCAAGTTGGTCATTGTAC 58.698 41.667 21.35 21.96 39.03 2.90
3803 8683 5.554437 TGTACTCCAAGTTGGTCATTGTA 57.446 39.130 21.35 13.73 39.03 2.41
3804 8684 4.431416 TGTACTCCAAGTTGGTCATTGT 57.569 40.909 21.35 14.58 39.03 2.71
3805 8685 5.362556 CTTGTACTCCAAGTTGGTCATTG 57.637 43.478 21.35 10.09 44.64 2.82
3816 8696 4.485875 TCCTACCTTGTCTTGTACTCCAA 58.514 43.478 0.00 0.00 0.00 3.53
3817 8697 4.122337 TCCTACCTTGTCTTGTACTCCA 57.878 45.455 0.00 0.00 0.00 3.86
3818 8698 4.282703 TGTTCCTACCTTGTCTTGTACTCC 59.717 45.833 0.00 0.00 0.00 3.85
3819 8699 5.464030 TGTTCCTACCTTGTCTTGTACTC 57.536 43.478 0.00 0.00 0.00 2.59
3820 8700 5.881923 TTGTTCCTACCTTGTCTTGTACT 57.118 39.130 0.00 0.00 0.00 2.73
3821 8701 6.148976 GGATTTGTTCCTACCTTGTCTTGTAC 59.851 42.308 0.00 0.00 41.78 2.90
3822 8702 6.235664 GGATTTGTTCCTACCTTGTCTTGTA 58.764 40.000 0.00 0.00 41.78 2.41
3823 8703 5.070685 GGATTTGTTCCTACCTTGTCTTGT 58.929 41.667 0.00 0.00 41.78 3.16
3824 8704 5.629079 GGATTTGTTCCTACCTTGTCTTG 57.371 43.478 0.00 0.00 41.78 3.02
3836 8716 9.536510 AGTATAGGATAGACTAGGATTTGTTCC 57.463 37.037 0.00 0.00 42.13 3.62
3839 8719 9.536510 GGAAGTATAGGATAGACTAGGATTTGT 57.463 37.037 0.00 0.00 43.33 2.83
3840 8720 9.762381 AGGAAGTATAGGATAGACTAGGATTTG 57.238 37.037 0.00 0.00 43.33 2.32
3879 8759 9.601217 GTGGATGTAAGATTAGTAATGTTGAGT 57.399 33.333 13.98 1.71 0.00 3.41
3880 8760 9.599866 TGTGGATGTAAGATTAGTAATGTTGAG 57.400 33.333 13.98 0.00 0.00 3.02
3881 8761 9.952030 TTGTGGATGTAAGATTAGTAATGTTGA 57.048 29.630 13.98 3.04 0.00 3.18
3892 8772 8.906867 CCAAGTCATTATTGTGGATGTAAGATT 58.093 33.333 0.00 0.00 0.00 2.40
3893 8773 8.055181 ACCAAGTCATTATTGTGGATGTAAGAT 58.945 33.333 0.00 0.00 33.39 2.40
3894 8774 7.402054 ACCAAGTCATTATTGTGGATGTAAGA 58.598 34.615 0.00 0.00 33.39 2.10
3895 8775 7.630242 ACCAAGTCATTATTGTGGATGTAAG 57.370 36.000 0.00 0.00 33.39 2.34
3896 8776 8.303156 CAAACCAAGTCATTATTGTGGATGTAA 58.697 33.333 0.00 0.00 33.39 2.41
3897 8777 7.667635 TCAAACCAAGTCATTATTGTGGATGTA 59.332 33.333 0.00 0.00 33.39 2.29
3898 8778 6.493115 TCAAACCAAGTCATTATTGTGGATGT 59.507 34.615 0.00 0.00 33.39 3.06
3899 8779 6.923012 TCAAACCAAGTCATTATTGTGGATG 58.077 36.000 0.00 0.00 33.39 3.51
3900 8780 7.722949 ATCAAACCAAGTCATTATTGTGGAT 57.277 32.000 0.00 0.00 33.39 3.41
3901 8781 7.888021 AGTATCAAACCAAGTCATTATTGTGGA 59.112 33.333 0.00 0.00 33.39 4.02
3902 8782 8.055279 AGTATCAAACCAAGTCATTATTGTGG 57.945 34.615 0.00 0.00 35.39 4.17
3903 8783 9.345517 CAAGTATCAAACCAAGTCATTATTGTG 57.654 33.333 0.00 0.00 0.00 3.33
3904 8784 9.295825 TCAAGTATCAAACCAAGTCATTATTGT 57.704 29.630 0.00 0.00 0.00 2.71
3909 8789 9.313118 GTTTTTCAAGTATCAAACCAAGTCATT 57.687 29.630 0.00 0.00 0.00 2.57
3910 8790 8.474025 TGTTTTTCAAGTATCAAACCAAGTCAT 58.526 29.630 0.00 0.00 0.00 3.06
3911 8791 7.831753 TGTTTTTCAAGTATCAAACCAAGTCA 58.168 30.769 0.00 0.00 0.00 3.41
3912 8792 8.871686 ATGTTTTTCAAGTATCAAACCAAGTC 57.128 30.769 0.00 0.00 0.00 3.01
3913 8793 9.665719 AAATGTTTTTCAAGTATCAAACCAAGT 57.334 25.926 0.00 0.00 0.00 3.16
4008 8889 8.768957 AAGGATCATGACTATTCATATGTTCG 57.231 34.615 0.00 0.00 40.79 3.95
4651 10235 4.219033 GGACAACTTACAAATCACGCTTG 58.781 43.478 0.00 0.00 0.00 4.01
4653 10237 2.812011 GGGACAACTTACAAATCACGCT 59.188 45.455 0.00 0.00 0.00 5.07
4655 10239 3.188460 CAGGGGACAACTTACAAATCACG 59.812 47.826 0.00 0.00 0.00 4.35
4657 10241 4.447138 ACAGGGGACAACTTACAAATCA 57.553 40.909 0.00 0.00 0.00 2.57
4658 10242 5.180680 GTGTACAGGGGACAACTTACAAATC 59.819 44.000 0.00 0.00 0.00 2.17
4659 10243 5.067954 GTGTACAGGGGACAACTTACAAAT 58.932 41.667 0.00 0.00 0.00 2.32
4663 10262 2.297033 TCGTGTACAGGGGACAACTTAC 59.703 50.000 15.15 0.00 0.00 2.34
4683 10283 6.318648 TCAGTATTGTTGGGCATCAATTACTC 59.681 38.462 0.00 0.00 37.73 2.59
4927 11737 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4929 11739 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4930 11740 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
4931 11741 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
4950 11796 8.367660 AGTTCATAGTGGAATCTCTACAAAGA 57.632 34.615 0.00 0.00 29.47 2.52
4951 11797 9.522804 GTAGTTCATAGTGGAATCTCTACAAAG 57.477 37.037 0.00 0.00 30.38 2.77
4953 11799 8.589701 TGTAGTTCATAGTGGAATCTCTACAA 57.410 34.615 0.00 0.00 34.07 2.41
4954 11800 8.768501 ATGTAGTTCATAGTGGAATCTCTACA 57.231 34.615 0.00 0.00 37.82 2.74
4956 11802 9.000486 CGTATGTAGTTCATAGTGGAATCTCTA 58.000 37.037 0.00 0.00 39.36 2.43
4957 11803 7.040340 CCGTATGTAGTTCATAGTGGAATCTCT 60.040 40.741 3.20 0.00 39.36 3.10
4958 11804 7.040617 TCCGTATGTAGTTCATAGTGGAATCTC 60.041 40.741 7.73 0.00 39.60 2.75
4959 11805 6.776116 TCCGTATGTAGTTCATAGTGGAATCT 59.224 38.462 7.73 0.00 39.60 2.40
4960 11806 6.978338 TCCGTATGTAGTTCATAGTGGAATC 58.022 40.000 7.73 0.00 39.60 2.52
4962 11808 6.322969 ACATCCGTATGTAGTTCATAGTGGAA 59.677 38.462 12.08 0.00 44.66 3.53
4963 11809 5.831525 ACATCCGTATGTAGTTCATAGTGGA 59.168 40.000 11.01 11.01 44.66 4.02
4964 11810 6.085555 ACATCCGTATGTAGTTCATAGTGG 57.914 41.667 0.00 2.99 44.66 4.00
4980 11826 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
4981 11827 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
4991 11837 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
4992 11838 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
4993 11839 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
5006 11852 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
5007 11853 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
5008 11854 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
5009 11855 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5010 11856 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5011 11857 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
5012 11858 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5013 11859 4.154015 CACATACGGAGCAAAATGAGTGAA 59.846 41.667 0.00 0.00 0.00 3.18
5014 11860 3.684305 CACATACGGAGCAAAATGAGTGA 59.316 43.478 0.00 0.00 0.00 3.41
5015 11861 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
5016 11862 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
5017 11863 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
5018 11864 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
5019 11865 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
5020 11866 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
5021 11867 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
5022 11868 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
5023 11869 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
5024 11870 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
5025 11871 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
5026 11872 2.956333 TCACTATGGACCACATACGGAG 59.044 50.000 0.00 0.00 41.03 4.63
5027 11873 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
5028 11874 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
5029 11875 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
5030 11876 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
5031 11877 6.042093 GGAGAGATTTCACTATGGACCACATA 59.958 42.308 0.00 0.00 41.03 2.29
5032 11878 5.163258 GGAGAGATTTCACTATGGACCACAT 60.163 44.000 0.00 0.00 43.68 3.21
5033 11879 4.162320 GGAGAGATTTCACTATGGACCACA 59.838 45.833 0.00 0.00 0.00 4.17
5034 11880 4.162320 TGGAGAGATTTCACTATGGACCAC 59.838 45.833 0.00 0.00 0.00 4.16
5035 11881 4.361783 TGGAGAGATTTCACTATGGACCA 58.638 43.478 0.00 0.00 0.00 4.02
5036 11882 5.359194 TTGGAGAGATTTCACTATGGACC 57.641 43.478 0.00 0.00 0.00 4.46
5037 11883 6.536941 GTCTTTGGAGAGATTTCACTATGGAC 59.463 42.308 0.00 0.00 31.07 4.02
5038 11884 6.441924 AGTCTTTGGAGAGATTTCACTATGGA 59.558 38.462 0.00 0.00 31.07 3.41
5039 11885 6.648192 AGTCTTTGGAGAGATTTCACTATGG 58.352 40.000 0.00 0.00 31.07 2.74
5040 11886 9.829507 ATAAGTCTTTGGAGAGATTTCACTATG 57.170 33.333 0.00 0.00 31.07 2.23
5051 11897 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
5052 11898 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
5053 11899 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
5054 11900 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
5055 11901 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
5056 11902 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5057 11903 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5058 11904 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5059 11905 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5060 11906 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5061 11907 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5062 11908 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5063 11909 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
5064 11910 8.731591 AAATACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
5065 11911 7.291651 TGAAATACTCCCTCCGTTCCTAAATAT 59.708 37.037 0.00 0.00 0.00 1.28
5066 11912 6.612456 TGAAATACTCCCTCCGTTCCTAAATA 59.388 38.462 0.00 0.00 0.00 1.40
5067 11913 5.427481 TGAAATACTCCCTCCGTTCCTAAAT 59.573 40.000 0.00 0.00 0.00 1.40
5068 11914 4.778958 TGAAATACTCCCTCCGTTCCTAAA 59.221 41.667 0.00 0.00 0.00 1.85
5069 11915 4.355549 TGAAATACTCCCTCCGTTCCTAA 58.644 43.478 0.00 0.00 0.00 2.69
5070 11916 3.985127 TGAAATACTCCCTCCGTTCCTA 58.015 45.455 0.00 0.00 0.00 2.94
5071 11917 2.829023 TGAAATACTCCCTCCGTTCCT 58.171 47.619 0.00 0.00 0.00 3.36
5072 11918 3.622166 TTGAAATACTCCCTCCGTTCC 57.378 47.619 0.00 0.00 0.00 3.62
5073 11919 7.803279 ATATTTTGAAATACTCCCTCCGTTC 57.197 36.000 0.00 0.00 34.01 3.95
5074 11920 7.832187 TCAATATTTTGAAATACTCCCTCCGTT 59.168 33.333 0.00 0.00 38.90 4.44
5075 11921 7.282450 GTCAATATTTTGAAATACTCCCTCCGT 59.718 37.037 0.00 0.00 43.29 4.69
5076 11922 7.499232 AGTCAATATTTTGAAATACTCCCTCCG 59.501 37.037 0.00 0.00 43.29 4.63
5077 11923 8.753497 AGTCAATATTTTGAAATACTCCCTCC 57.247 34.615 0.00 0.00 43.29 4.30
5191 12142 5.045869 TCAATCTCAAATACTCCCTCCGTTT 60.046 40.000 0.00 0.00 0.00 3.60
5280 12231 7.824289 TGAGGGTGAAAAACTATAGTGAGAATG 59.176 37.037 6.06 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.