Multiple sequence alignment - TraesCS1D01G057000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G057000 chr1D 100.000 3415 0 0 1 3415 37517091 37520505 0.000000e+00 6307.0
1 TraesCS1D01G057000 chr1D 94.511 1931 91 10 618 2533 6491897 6489967 0.000000e+00 2964.0
2 TraesCS1D01G057000 chr1D 94.367 1935 85 13 620 2533 22577395 22575464 0.000000e+00 2948.0
3 TraesCS1D01G057000 chr1D 92.994 1927 90 21 617 2533 12354511 12356402 0.000000e+00 2769.0
4 TraesCS1D01G057000 chr1D 93.140 758 38 6 2536 3291 110902303 110901558 0.000000e+00 1099.0
5 TraesCS1D01G057000 chr1D 92.368 760 42 9 2534 3292 475526333 475525589 0.000000e+00 1068.0
6 TraesCS1D01G057000 chr1D 91.995 762 42 11 2534 3292 420009171 420008426 0.000000e+00 1051.0
7 TraesCS1D01G057000 chr1D 84.243 971 106 28 620 1572 18870394 18871335 0.000000e+00 902.0
8 TraesCS1D01G057000 chr4D 95.490 1929 69 8 619 2533 428529858 428531782 0.000000e+00 3064.0
9 TraesCS1D01G057000 chr4D 94.579 1937 82 18 620 2533 398986367 398984431 0.000000e+00 2974.0
10 TraesCS1D01G057000 chr4D 93.832 762 36 5 2531 3291 428531814 428532565 0.000000e+00 1136.0
11 TraesCS1D01G057000 chr4D 92.632 760 39 9 2534 3292 507112531 507111788 0.000000e+00 1077.0
12 TraesCS1D01G057000 chr6D 95.391 1931 72 7 620 2533 472510963 472512893 0.000000e+00 3057.0
13 TraesCS1D01G057000 chr6D 94.920 1929 84 13 618 2533 367564539 367562612 0.000000e+00 3007.0
14 TraesCS1D01G057000 chr6D 94.742 1940 76 17 620 2533 7981042 7979103 0.000000e+00 2994.0
15 TraesCS1D01G057000 chr6D 94.631 1937 79 13 620 2533 51499464 51501398 0.000000e+00 2977.0
16 TraesCS1D01G057000 chr3D 94.821 1931 83 15 620 2533 574856805 574854875 0.000000e+00 2996.0
17 TraesCS1D01G057000 chr3D 92.549 765 38 10 2531 3292 11275683 11276431 0.000000e+00 1079.0
18 TraesCS1D01G057000 chr3D 92.016 764 44 10 2531 3292 359624456 359625204 0.000000e+00 1057.0
19 TraesCS1D01G057000 chr5D 94.631 1937 79 13 620 2533 408335975 408334041 0.000000e+00 2977.0
20 TraesCS1D01G057000 chr5D 94.516 1933 82 17 618 2533 244414328 244412403 0.000000e+00 2961.0
21 TraesCS1D01G057000 chr7D 94.579 1937 80 14 620 2533 245402431 245400497 0.000000e+00 2972.0
22 TraesCS1D01G057000 chr7D 88.785 107 7 2 3313 3415 36172922 36172817 3.580000e-25 126.0
23 TraesCS1D01G057000 chr7D 72.481 516 65 40 158 616 522154198 522154693 1.010000e-15 95.3
24 TraesCS1D01G057000 chr2B 94.125 783 42 3 2531 3310 729779116 729779897 0.000000e+00 1188.0
25 TraesCS1D01G057000 chr2B 96.875 96 2 1 3313 3408 729779958 729780052 3.530000e-35 159.0
26 TraesCS1D01G057000 chr2A 89.350 892 59 18 2531 3412 688776558 688777423 0.000000e+00 1088.0
27 TraesCS1D01G057000 chr2A 88.889 891 48 24 2531 3415 84023448 84024293 0.000000e+00 1050.0
28 TraesCS1D01G057000 chr2D 92.147 764 42 11 2531 3292 74955080 74955827 0.000000e+00 1062.0
29 TraesCS1D01G057000 chr2D 88.785 107 7 2 3313 3415 605542991 605542886 3.580000e-25 126.0
30 TraesCS1D01G057000 chr2D 85.047 107 11 4 3313 3415 382700007 382699902 1.680000e-18 104.0
31 TraesCS1D01G057000 chr1B 89.831 472 31 7 161 618 57432205 57432673 1.060000e-164 590.0
32 TraesCS1D01G057000 chr1B 89.637 193 14 5 427 613 57433673 57433865 1.220000e-59 241.0
33 TraesCS1D01G057000 chr1A 91.148 305 17 4 233 527 36765982 36766286 4.100000e-109 405.0
34 TraesCS1D01G057000 chr1A 88.947 190 18 3 427 613 36768149 36768338 7.370000e-57 231.0
35 TraesCS1D01G057000 chr3A 94.118 187 10 1 3229 3415 244331046 244331231 2.010000e-72 283.0
36 TraesCS1D01G057000 chr7A 98.020 101 1 1 3315 3415 659550306 659550207 1.260000e-39 174.0
37 TraesCS1D01G057000 chr7A 74.089 494 69 33 158 614 602658237 602658708 7.640000e-32 148.0
38 TraesCS1D01G057000 chr7B 97.087 103 2 1 3313 3415 635003894 635003995 4.530000e-39 172.0
39 TraesCS1D01G057000 chr7B 73.790 496 71 34 158 616 556332871 556333344 1.280000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G057000 chr1D 37517091 37520505 3414 False 6307.0 6307 100.0000 1 3415 1 chr1D.!!$F3 3414
1 TraesCS1D01G057000 chr1D 6489967 6491897 1930 True 2964.0 2964 94.5110 618 2533 1 chr1D.!!$R1 1915
2 TraesCS1D01G057000 chr1D 22575464 22577395 1931 True 2948.0 2948 94.3670 620 2533 1 chr1D.!!$R2 1913
3 TraesCS1D01G057000 chr1D 12354511 12356402 1891 False 2769.0 2769 92.9940 617 2533 1 chr1D.!!$F1 1916
4 TraesCS1D01G057000 chr1D 110901558 110902303 745 True 1099.0 1099 93.1400 2536 3291 1 chr1D.!!$R3 755
5 TraesCS1D01G057000 chr1D 475525589 475526333 744 True 1068.0 1068 92.3680 2534 3292 1 chr1D.!!$R5 758
6 TraesCS1D01G057000 chr1D 420008426 420009171 745 True 1051.0 1051 91.9950 2534 3292 1 chr1D.!!$R4 758
7 TraesCS1D01G057000 chr1D 18870394 18871335 941 False 902.0 902 84.2430 620 1572 1 chr1D.!!$F2 952
8 TraesCS1D01G057000 chr4D 398984431 398986367 1936 True 2974.0 2974 94.5790 620 2533 1 chr4D.!!$R1 1913
9 TraesCS1D01G057000 chr4D 428529858 428532565 2707 False 2100.0 3064 94.6610 619 3291 2 chr4D.!!$F1 2672
10 TraesCS1D01G057000 chr4D 507111788 507112531 743 True 1077.0 1077 92.6320 2534 3292 1 chr4D.!!$R2 758
11 TraesCS1D01G057000 chr6D 472510963 472512893 1930 False 3057.0 3057 95.3910 620 2533 1 chr6D.!!$F2 1913
12 TraesCS1D01G057000 chr6D 367562612 367564539 1927 True 3007.0 3007 94.9200 618 2533 1 chr6D.!!$R2 1915
13 TraesCS1D01G057000 chr6D 7979103 7981042 1939 True 2994.0 2994 94.7420 620 2533 1 chr6D.!!$R1 1913
14 TraesCS1D01G057000 chr6D 51499464 51501398 1934 False 2977.0 2977 94.6310 620 2533 1 chr6D.!!$F1 1913
15 TraesCS1D01G057000 chr3D 574854875 574856805 1930 True 2996.0 2996 94.8210 620 2533 1 chr3D.!!$R1 1913
16 TraesCS1D01G057000 chr3D 11275683 11276431 748 False 1079.0 1079 92.5490 2531 3292 1 chr3D.!!$F1 761
17 TraesCS1D01G057000 chr3D 359624456 359625204 748 False 1057.0 1057 92.0160 2531 3292 1 chr3D.!!$F2 761
18 TraesCS1D01G057000 chr5D 408334041 408335975 1934 True 2977.0 2977 94.6310 620 2533 1 chr5D.!!$R2 1913
19 TraesCS1D01G057000 chr5D 244412403 244414328 1925 True 2961.0 2961 94.5160 618 2533 1 chr5D.!!$R1 1915
20 TraesCS1D01G057000 chr7D 245400497 245402431 1934 True 2972.0 2972 94.5790 620 2533 1 chr7D.!!$R2 1913
21 TraesCS1D01G057000 chr2B 729779116 729780052 936 False 673.5 1188 95.5000 2531 3408 2 chr2B.!!$F1 877
22 TraesCS1D01G057000 chr2A 688776558 688777423 865 False 1088.0 1088 89.3500 2531 3412 1 chr2A.!!$F2 881
23 TraesCS1D01G057000 chr2A 84023448 84024293 845 False 1050.0 1050 88.8890 2531 3415 1 chr2A.!!$F1 884
24 TraesCS1D01G057000 chr2D 74955080 74955827 747 False 1062.0 1062 92.1470 2531 3292 1 chr2D.!!$F1 761
25 TraesCS1D01G057000 chr1B 57432205 57433865 1660 False 415.5 590 89.7340 161 618 2 chr1B.!!$F1 457
26 TraesCS1D01G057000 chr1A 36765982 36768338 2356 False 318.0 405 90.0475 233 613 2 chr1A.!!$F1 380

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 588 0.035915 GCAAAGGTGAGGAGGAGGAC 60.036 60.0 0.0 0.0 0.0 3.85 F
608 612 0.107945 GCGAGAGTGCCTTTCCTCAT 60.108 55.0 0.0 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 3285 1.180029 CCTTCATTGCCTTCCTGGTG 58.820 55.000 0.0 0.00 38.35 4.17 R
2429 4479 2.436417 GCCTTGGATGTACTTCAGCAA 58.564 47.619 10.6 5.88 33.66 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.787473 ATCTTGCCAGTCGATTTCCA 57.213 45.000 0.00 0.00 0.00 3.53
25 26 2.787473 TCTTGCCAGTCGATTTCCAT 57.213 45.000 0.00 0.00 0.00 3.41
26 27 3.071874 TCTTGCCAGTCGATTTCCATT 57.928 42.857 0.00 0.00 0.00 3.16
27 28 3.420893 TCTTGCCAGTCGATTTCCATTT 58.579 40.909 0.00 0.00 0.00 2.32
28 29 3.826157 TCTTGCCAGTCGATTTCCATTTT 59.174 39.130 0.00 0.00 0.00 1.82
29 30 4.280677 TCTTGCCAGTCGATTTCCATTTTT 59.719 37.500 0.00 0.00 0.00 1.94
30 31 5.475220 TCTTGCCAGTCGATTTCCATTTTTA 59.525 36.000 0.00 0.00 0.00 1.52
31 32 5.713792 TGCCAGTCGATTTCCATTTTTAA 57.286 34.783 0.00 0.00 0.00 1.52
32 33 5.708948 TGCCAGTCGATTTCCATTTTTAAG 58.291 37.500 0.00 0.00 0.00 1.85
33 34 5.475220 TGCCAGTCGATTTCCATTTTTAAGA 59.525 36.000 0.00 0.00 0.00 2.10
34 35 6.015856 TGCCAGTCGATTTCCATTTTTAAGAA 60.016 34.615 0.00 0.00 0.00 2.52
35 36 6.866248 GCCAGTCGATTTCCATTTTTAAGAAA 59.134 34.615 0.00 0.00 34.26 2.52
36 37 7.545615 GCCAGTCGATTTCCATTTTTAAGAAAT 59.454 33.333 0.00 0.00 41.64 2.17
37 38 9.423061 CCAGTCGATTTCCATTTTTAAGAAATT 57.577 29.630 0.00 0.00 39.64 1.82
41 42 8.716909 TCGATTTCCATTTTTAAGAAATTTGGC 58.283 29.630 0.00 0.00 39.64 4.52
42 43 8.502387 CGATTTCCATTTTTAAGAAATTTGGCA 58.498 29.630 0.00 0.00 39.64 4.92
45 46 7.143514 TCCATTTTTAAGAAATTTGGCATGC 57.856 32.000 9.90 9.90 32.51 4.06
46 47 6.713903 TCCATTTTTAAGAAATTTGGCATGCA 59.286 30.769 21.36 2.54 32.51 3.96
47 48 7.393796 TCCATTTTTAAGAAATTTGGCATGCAT 59.606 29.630 21.36 0.85 32.51 3.96
48 49 8.675504 CCATTTTTAAGAAATTTGGCATGCATA 58.324 29.630 21.36 4.71 0.00 3.14
51 52 9.890352 TTTTTAAGAAATTTGGCATGCATAAAC 57.110 25.926 21.36 8.49 0.00 2.01
52 53 8.613060 TTTAAGAAATTTGGCATGCATAAACA 57.387 26.923 21.36 4.57 0.00 2.83
53 54 8.613060 TTAAGAAATTTGGCATGCATAAACAA 57.387 26.923 21.36 11.09 0.00 2.83
54 55 6.730960 AGAAATTTGGCATGCATAAACAAG 57.269 33.333 21.36 0.00 0.00 3.16
55 56 5.644636 AGAAATTTGGCATGCATAAACAAGG 59.355 36.000 21.36 0.00 0.00 3.61
56 57 3.331478 TTTGGCATGCATAAACAAGGG 57.669 42.857 21.36 0.00 0.00 3.95
57 58 2.228545 TGGCATGCATAAACAAGGGA 57.771 45.000 21.36 0.00 0.00 4.20
58 59 2.533916 TGGCATGCATAAACAAGGGAA 58.466 42.857 21.36 0.00 0.00 3.97
59 60 3.106054 TGGCATGCATAAACAAGGGAAT 58.894 40.909 21.36 0.00 0.00 3.01
60 61 3.118702 TGGCATGCATAAACAAGGGAATG 60.119 43.478 21.36 0.00 0.00 2.67
61 62 3.118665 GGCATGCATAAACAAGGGAATGT 60.119 43.478 21.36 0.00 34.24 2.71
62 63 3.866910 GCATGCATAAACAAGGGAATGTG 59.133 43.478 14.21 0.00 32.81 3.21
63 64 4.381825 GCATGCATAAACAAGGGAATGTGA 60.382 41.667 14.21 0.00 32.81 3.58
64 65 4.782019 TGCATAAACAAGGGAATGTGAC 57.218 40.909 0.00 0.00 32.81 3.67
65 66 4.406456 TGCATAAACAAGGGAATGTGACT 58.594 39.130 0.00 0.00 32.81 3.41
66 67 4.832266 TGCATAAACAAGGGAATGTGACTT 59.168 37.500 0.00 0.00 32.81 3.01
67 68 5.163513 GCATAAACAAGGGAATGTGACTTG 58.836 41.667 0.00 0.00 45.27 3.16
74 75 6.428385 CAAGGGAATGTGACTTGTAGAATC 57.572 41.667 0.00 0.00 37.43 2.52
75 76 5.104259 AGGGAATGTGACTTGTAGAATCC 57.896 43.478 0.00 0.00 0.00 3.01
76 77 4.536090 AGGGAATGTGACTTGTAGAATCCA 59.464 41.667 0.00 0.00 0.00 3.41
77 78 5.192522 AGGGAATGTGACTTGTAGAATCCAT 59.807 40.000 0.00 0.00 0.00 3.41
78 79 5.529060 GGGAATGTGACTTGTAGAATCCATC 59.471 44.000 0.00 0.00 0.00 3.51
79 80 6.115446 GGAATGTGACTTGTAGAATCCATCA 58.885 40.000 0.00 0.00 0.00 3.07
80 81 6.259608 GGAATGTGACTTGTAGAATCCATCAG 59.740 42.308 0.00 0.00 0.00 2.90
81 82 5.745312 TGTGACTTGTAGAATCCATCAGT 57.255 39.130 0.00 0.00 0.00 3.41
82 83 5.724328 TGTGACTTGTAGAATCCATCAGTC 58.276 41.667 0.00 0.00 0.00 3.51
83 84 5.245977 TGTGACTTGTAGAATCCATCAGTCA 59.754 40.000 0.00 0.00 0.00 3.41
84 85 6.166279 GTGACTTGTAGAATCCATCAGTCAA 58.834 40.000 0.83 0.00 35.88 3.18
85 86 6.312426 GTGACTTGTAGAATCCATCAGTCAAG 59.688 42.308 0.83 0.00 37.79 3.02
86 87 6.014242 TGACTTGTAGAATCCATCAGTCAAGT 60.014 38.462 0.00 0.00 42.38 3.16
87 88 6.169094 ACTTGTAGAATCCATCAGTCAAGTG 58.831 40.000 0.00 0.00 40.43 3.16
88 89 6.014242 ACTTGTAGAATCCATCAGTCAAGTGA 60.014 38.462 0.00 0.00 40.43 3.41
89 90 6.550938 TGTAGAATCCATCAGTCAAGTGAT 57.449 37.500 0.00 0.00 37.68 3.06
90 91 6.950842 TGTAGAATCCATCAGTCAAGTGATT 58.049 36.000 0.00 0.00 34.81 2.57
91 92 7.044181 TGTAGAATCCATCAGTCAAGTGATTC 58.956 38.462 0.00 0.00 34.81 2.52
92 93 5.435291 AGAATCCATCAGTCAAGTGATTCC 58.565 41.667 0.00 0.00 34.81 3.01
93 94 4.849813 ATCCATCAGTCAAGTGATTCCA 57.150 40.909 0.00 0.00 34.81 3.53
94 95 4.639078 TCCATCAGTCAAGTGATTCCAA 57.361 40.909 0.00 0.00 34.81 3.53
95 96 5.183530 TCCATCAGTCAAGTGATTCCAAT 57.816 39.130 0.00 0.00 34.81 3.16
96 97 6.312141 TCCATCAGTCAAGTGATTCCAATA 57.688 37.500 0.00 0.00 34.81 1.90
97 98 6.720309 TCCATCAGTCAAGTGATTCCAATAA 58.280 36.000 0.00 0.00 34.81 1.40
98 99 6.599244 TCCATCAGTCAAGTGATTCCAATAAC 59.401 38.462 0.00 0.00 34.81 1.89
99 100 6.600822 CCATCAGTCAAGTGATTCCAATAACT 59.399 38.462 0.00 0.00 34.81 2.24
100 101 7.121759 CCATCAGTCAAGTGATTCCAATAACTT 59.878 37.037 0.00 0.00 40.06 2.66
101 102 9.166173 CATCAGTCAAGTGATTCCAATAACTTA 57.834 33.333 2.22 0.00 37.89 2.24
102 103 9.911788 ATCAGTCAAGTGATTCCAATAACTTAT 57.088 29.630 2.22 0.00 37.89 1.73
121 122 8.644318 AACTTATACAATTGTCTGATACCGAC 57.356 34.615 15.85 0.00 0.00 4.79
122 123 6.916387 ACTTATACAATTGTCTGATACCGACG 59.084 38.462 15.85 0.00 34.17 5.12
123 124 3.861276 ACAATTGTCTGATACCGACGA 57.139 42.857 4.92 0.00 34.17 4.20
124 125 4.182693 ACAATTGTCTGATACCGACGAA 57.817 40.909 4.92 0.00 34.17 3.85
125 126 4.562082 ACAATTGTCTGATACCGACGAAA 58.438 39.130 4.92 0.00 34.17 3.46
126 127 4.992319 ACAATTGTCTGATACCGACGAAAA 59.008 37.500 4.92 0.00 34.17 2.29
127 128 5.642063 ACAATTGTCTGATACCGACGAAAAT 59.358 36.000 4.92 0.00 34.17 1.82
128 129 5.968387 ATTGTCTGATACCGACGAAAATC 57.032 39.130 0.00 0.00 34.17 2.17
129 130 4.443913 TGTCTGATACCGACGAAAATCA 57.556 40.909 0.00 1.63 34.17 2.57
130 131 4.421058 TGTCTGATACCGACGAAAATCAG 58.579 43.478 19.48 19.48 44.32 2.90
131 132 3.797256 GTCTGATACCGACGAAAATCAGG 59.203 47.826 22.53 11.82 43.54 3.86
132 133 2.540101 CTGATACCGACGAAAATCAGGC 59.460 50.000 18.52 0.00 40.97 4.85
133 134 2.093921 TGATACCGACGAAAATCAGGCA 60.094 45.455 0.00 0.00 0.00 4.75
134 135 2.459060 TACCGACGAAAATCAGGCAA 57.541 45.000 0.00 0.00 0.00 4.52
135 136 1.156736 ACCGACGAAAATCAGGCAAG 58.843 50.000 0.00 0.00 0.00 4.01
136 137 0.179189 CCGACGAAAATCAGGCAAGC 60.179 55.000 0.00 0.00 0.00 4.01
137 138 0.516877 CGACGAAAATCAGGCAAGCA 59.483 50.000 0.00 0.00 0.00 3.91
138 139 1.464687 CGACGAAAATCAGGCAAGCAG 60.465 52.381 0.00 0.00 0.00 4.24
139 140 1.537202 GACGAAAATCAGGCAAGCAGT 59.463 47.619 0.00 0.00 0.00 4.40
140 141 1.956477 ACGAAAATCAGGCAAGCAGTT 59.044 42.857 0.00 0.00 0.00 3.16
141 142 2.362077 ACGAAAATCAGGCAAGCAGTTT 59.638 40.909 0.00 0.00 0.00 2.66
142 143 2.982470 CGAAAATCAGGCAAGCAGTTTC 59.018 45.455 0.00 0.00 0.00 2.78
143 144 3.304928 CGAAAATCAGGCAAGCAGTTTCT 60.305 43.478 0.00 0.00 0.00 2.52
144 145 3.655276 AAATCAGGCAAGCAGTTTCTG 57.345 42.857 0.00 0.00 34.12 3.02
145 146 2.574006 ATCAGGCAAGCAGTTTCTGA 57.426 45.000 0.66 0.00 38.59 3.27
146 147 2.346766 TCAGGCAAGCAGTTTCTGAA 57.653 45.000 0.66 0.00 32.44 3.02
147 148 2.653726 TCAGGCAAGCAGTTTCTGAAA 58.346 42.857 0.00 0.00 32.44 2.69
148 149 2.358898 TCAGGCAAGCAGTTTCTGAAAC 59.641 45.455 22.40 22.40 41.69 2.78
157 158 2.475200 GTTTCTGAAACTGCAACGCT 57.525 45.000 22.55 0.00 38.35 5.07
158 159 3.602390 GTTTCTGAAACTGCAACGCTA 57.398 42.857 22.55 0.00 38.35 4.26
159 160 3.289076 GTTTCTGAAACTGCAACGCTAC 58.711 45.455 22.55 0.00 38.35 3.58
163 164 2.285083 TGAAACTGCAACGCTACAAGT 58.715 42.857 0.00 0.00 0.00 3.16
175 176 1.336887 GCTACAAGTTGAGCACCGAGA 60.337 52.381 10.54 0.00 38.62 4.04
183 184 0.539669 TGAGCACCGAGAGAAGGACA 60.540 55.000 0.00 0.00 0.00 4.02
186 187 0.389166 GCACCGAGAGAAGGACAGTG 60.389 60.000 0.00 0.00 0.00 3.66
199 200 0.307760 GACAGTGGCTGTGAAAACCG 59.692 55.000 6.50 0.00 45.44 4.44
216 217 2.985847 GGCGCCAAAGCAGAGGTT 60.986 61.111 24.80 0.00 39.83 3.50
306 310 2.436115 GTGTTCCTACCGCTGCCC 60.436 66.667 0.00 0.00 0.00 5.36
351 355 0.900647 CGACCTTCCTGGGAGTCTGT 60.901 60.000 0.32 0.00 41.11 3.41
362 366 2.003937 GGAGTCTGTATCCTCTCCCC 57.996 60.000 0.00 0.00 40.14 4.81
363 367 1.501604 GGAGTCTGTATCCTCTCCCCT 59.498 57.143 0.00 0.00 40.14 4.79
364 368 2.090999 GGAGTCTGTATCCTCTCCCCTT 60.091 54.545 0.00 0.00 40.14 3.95
365 369 2.962421 GAGTCTGTATCCTCTCCCCTTG 59.038 54.545 0.00 0.00 0.00 3.61
366 370 2.043227 GTCTGTATCCTCTCCCCTTGG 58.957 57.143 0.00 0.00 0.00 3.61
367 371 1.062121 TCTGTATCCTCTCCCCTTGGG 60.062 57.143 0.00 0.00 46.11 4.12
368 372 0.722676 TGTATCCTCTCCCCTTGGGT 59.277 55.000 4.84 0.00 44.74 4.51
369 373 1.082194 TGTATCCTCTCCCCTTGGGTT 59.918 52.381 4.84 0.00 44.74 4.11
370 374 2.206223 GTATCCTCTCCCCTTGGGTTT 58.794 52.381 4.84 0.00 44.74 3.27
371 375 1.299939 ATCCTCTCCCCTTGGGTTTC 58.700 55.000 4.84 0.00 44.74 2.78
372 376 0.196118 TCCTCTCCCCTTGGGTTTCT 59.804 55.000 4.84 0.00 44.74 2.52
373 377 0.329596 CCTCTCCCCTTGGGTTTCTG 59.670 60.000 4.84 0.00 44.74 3.02
374 378 0.322906 CTCTCCCCTTGGGTTTCTGC 60.323 60.000 4.84 0.00 44.74 4.26
375 379 1.065410 TCTCCCCTTGGGTTTCTGCA 61.065 55.000 4.84 0.00 44.74 4.41
376 380 0.178964 CTCCCCTTGGGTTTCTGCAA 60.179 55.000 4.84 0.00 44.74 4.08
377 381 0.263172 TCCCCTTGGGTTTCTGCAAA 59.737 50.000 4.84 0.00 44.74 3.68
378 382 0.681175 CCCCTTGGGTTTCTGCAAAG 59.319 55.000 4.84 0.00 38.25 2.77
379 383 1.413118 CCCTTGGGTTTCTGCAAAGT 58.587 50.000 0.00 0.00 0.00 2.66
380 384 1.069049 CCCTTGGGTTTCTGCAAAGTG 59.931 52.381 0.00 0.00 0.00 3.16
381 385 2.031120 CCTTGGGTTTCTGCAAAGTGA 58.969 47.619 0.00 0.00 0.00 3.41
382 386 2.430332 CCTTGGGTTTCTGCAAAGTGAA 59.570 45.455 0.00 0.00 0.00 3.18
383 387 3.118811 CCTTGGGTTTCTGCAAAGTGAAA 60.119 43.478 0.00 0.00 0.00 2.69
384 388 3.799281 TGGGTTTCTGCAAAGTGAAAG 57.201 42.857 0.00 0.00 33.54 2.62
385 389 2.430332 TGGGTTTCTGCAAAGTGAAAGG 59.570 45.455 0.00 0.00 33.54 3.11
386 390 2.473816 GGTTTCTGCAAAGTGAAAGGC 58.526 47.619 0.00 0.00 33.54 4.35
387 391 2.119457 GTTTCTGCAAAGTGAAAGGCG 58.881 47.619 0.00 0.00 33.54 5.52
388 392 0.667993 TTCTGCAAAGTGAAAGGCGG 59.332 50.000 0.00 0.00 0.00 6.13
389 393 1.372128 CTGCAAAGTGAAAGGCGGC 60.372 57.895 0.00 0.00 0.00 6.53
390 394 2.074230 CTGCAAAGTGAAAGGCGGCA 62.074 55.000 13.08 0.00 0.00 5.69
391 395 1.067250 GCAAAGTGAAAGGCGGCAA 59.933 52.632 13.08 0.00 0.00 4.52
392 396 0.319813 GCAAAGTGAAAGGCGGCAAT 60.320 50.000 13.08 0.00 0.00 3.56
393 397 1.873486 GCAAAGTGAAAGGCGGCAATT 60.873 47.619 13.08 5.63 0.00 2.32
394 398 2.061028 CAAAGTGAAAGGCGGCAATTC 58.939 47.619 13.08 15.60 0.00 2.17
395 399 1.327303 AAGTGAAAGGCGGCAATTCA 58.673 45.000 21.02 21.02 0.00 2.57
396 400 1.549203 AGTGAAAGGCGGCAATTCAT 58.451 45.000 25.37 15.36 35.70 2.57
397 401 1.203052 AGTGAAAGGCGGCAATTCATG 59.797 47.619 25.37 0.00 35.70 3.07
416 420 7.642071 TTCATGCTTTTGTAAGAGATTTTGC 57.358 32.000 0.00 0.00 32.92 3.68
417 421 6.985117 TCATGCTTTTGTAAGAGATTTTGCT 58.015 32.000 0.00 0.00 32.92 3.91
418 422 7.436118 TCATGCTTTTGTAAGAGATTTTGCTT 58.564 30.769 0.00 0.00 32.92 3.91
419 423 7.596248 TCATGCTTTTGTAAGAGATTTTGCTTC 59.404 33.333 0.00 0.00 32.92 3.86
420 424 6.804677 TGCTTTTGTAAGAGATTTTGCTTCA 58.195 32.000 0.00 0.00 32.92 3.02
421 425 7.436118 TGCTTTTGTAAGAGATTTTGCTTCAT 58.564 30.769 0.00 0.00 32.92 2.57
422 426 7.383029 TGCTTTTGTAAGAGATTTTGCTTCATG 59.617 33.333 0.00 0.00 32.92 3.07
423 427 7.596248 GCTTTTGTAAGAGATTTTGCTTCATGA 59.404 33.333 0.00 0.00 32.92 3.07
424 428 8.801715 TTTTGTAAGAGATTTTGCTTCATGAC 57.198 30.769 0.00 0.00 0.00 3.06
425 429 7.509141 TTGTAAGAGATTTTGCTTCATGACA 57.491 32.000 0.00 0.00 0.00 3.58
426 430 7.509141 TGTAAGAGATTTTGCTTCATGACAA 57.491 32.000 0.00 0.00 0.00 3.18
427 431 8.114331 TGTAAGAGATTTTGCTTCATGACAAT 57.886 30.769 0.00 0.00 0.00 2.71
428 432 8.239314 TGTAAGAGATTTTGCTTCATGACAATC 58.761 33.333 0.00 0.00 0.00 2.67
429 433 6.829229 AGAGATTTTGCTTCATGACAATCA 57.171 33.333 0.00 0.00 0.00 2.57
430 434 7.223260 AGAGATTTTGCTTCATGACAATCAA 57.777 32.000 0.00 0.00 0.00 2.57
431 435 7.313646 AGAGATTTTGCTTCATGACAATCAAG 58.686 34.615 0.00 0.00 0.00 3.02
432 436 7.176165 AGAGATTTTGCTTCATGACAATCAAGA 59.824 33.333 0.00 0.00 0.00 3.02
433 437 7.663827 AGATTTTGCTTCATGACAATCAAGAA 58.336 30.769 0.00 0.00 33.68 2.52
434 438 8.145767 AGATTTTGCTTCATGACAATCAAGAAA 58.854 29.630 0.00 0.00 34.28 2.52
435 439 8.842358 ATTTTGCTTCATGACAATCAAGAAAT 57.158 26.923 0.00 0.00 34.28 2.17
436 440 8.665643 TTTTGCTTCATGACAATCAAGAAATT 57.334 26.923 0.00 0.00 34.28 1.82
437 441 9.761504 TTTTGCTTCATGACAATCAAGAAATTA 57.238 25.926 0.00 0.00 34.28 1.40
438 442 8.975410 TTGCTTCATGACAATCAAGAAATTAG 57.025 30.769 0.00 0.00 34.28 1.73
439 443 8.339344 TGCTTCATGACAATCAAGAAATTAGA 57.661 30.769 0.00 0.00 34.28 2.10
440 444 8.456471 TGCTTCATGACAATCAAGAAATTAGAG 58.544 33.333 0.00 0.00 34.28 2.43
441 445 8.671921 GCTTCATGACAATCAAGAAATTAGAGA 58.328 33.333 0.00 0.00 34.28 3.10
443 447 8.206325 TCATGACAATCAAGAAATTAGAGAGC 57.794 34.615 0.00 0.00 0.00 4.09
444 448 7.825761 TCATGACAATCAAGAAATTAGAGAGCA 59.174 33.333 0.00 0.00 0.00 4.26
445 449 7.984422 TGACAATCAAGAAATTAGAGAGCAA 57.016 32.000 0.00 0.00 0.00 3.91
446 450 8.394971 TGACAATCAAGAAATTAGAGAGCAAA 57.605 30.769 0.00 0.00 0.00 3.68
447 451 8.509690 TGACAATCAAGAAATTAGAGAGCAAAG 58.490 33.333 0.00 0.00 0.00 2.77
448 452 8.627208 ACAATCAAGAAATTAGAGAGCAAAGA 57.373 30.769 0.00 0.00 0.00 2.52
449 453 8.728833 ACAATCAAGAAATTAGAGAGCAAAGAG 58.271 33.333 0.00 0.00 0.00 2.85
450 454 7.862512 ATCAAGAAATTAGAGAGCAAAGAGG 57.137 36.000 0.00 0.00 0.00 3.69
451 455 7.009179 TCAAGAAATTAGAGAGCAAAGAGGA 57.991 36.000 0.00 0.00 0.00 3.71
452 456 7.102346 TCAAGAAATTAGAGAGCAAAGAGGAG 58.898 38.462 0.00 0.00 0.00 3.69
453 457 6.865834 AGAAATTAGAGAGCAAAGAGGAGA 57.134 37.500 0.00 0.00 0.00 3.71
454 458 7.436320 AGAAATTAGAGAGCAAAGAGGAGAT 57.564 36.000 0.00 0.00 0.00 2.75
455 459 7.274447 AGAAATTAGAGAGCAAAGAGGAGATG 58.726 38.462 0.00 0.00 0.00 2.90
456 460 5.549742 ATTAGAGAGCAAAGAGGAGATGG 57.450 43.478 0.00 0.00 0.00 3.51
457 461 3.113191 AGAGAGCAAAGAGGAGATGGA 57.887 47.619 0.00 0.00 0.00 3.41
458 462 3.656496 AGAGAGCAAAGAGGAGATGGAT 58.344 45.455 0.00 0.00 0.00 3.41
459 463 3.388676 AGAGAGCAAAGAGGAGATGGATG 59.611 47.826 0.00 0.00 0.00 3.51
460 464 2.158784 AGAGCAAAGAGGAGATGGATGC 60.159 50.000 0.00 0.00 0.00 3.91
461 465 1.562942 AGCAAAGAGGAGATGGATGCA 59.437 47.619 0.00 0.00 34.89 3.96
462 466 1.674962 GCAAAGAGGAGATGGATGCAC 59.325 52.381 0.00 0.00 32.80 4.57
463 467 2.942752 GCAAAGAGGAGATGGATGCACA 60.943 50.000 0.00 0.00 32.80 4.57
464 468 2.681848 CAAAGAGGAGATGGATGCACAC 59.318 50.000 0.00 0.00 0.00 3.82
465 469 1.576577 AGAGGAGATGGATGCACACA 58.423 50.000 0.00 0.00 0.00 3.72
466 470 1.911357 AGAGGAGATGGATGCACACAA 59.089 47.619 0.00 0.00 0.00 3.33
467 471 2.306805 AGAGGAGATGGATGCACACAAA 59.693 45.455 0.00 0.00 0.00 2.83
468 472 3.084039 GAGGAGATGGATGCACACAAAA 58.916 45.455 0.00 0.00 0.00 2.44
469 473 3.698040 GAGGAGATGGATGCACACAAAAT 59.302 43.478 0.00 0.00 0.00 1.82
470 474 4.858850 AGGAGATGGATGCACACAAAATA 58.141 39.130 0.00 0.00 0.00 1.40
471 475 4.641989 AGGAGATGGATGCACACAAAATAC 59.358 41.667 0.00 0.00 0.00 1.89
472 476 4.202050 GGAGATGGATGCACACAAAATACC 60.202 45.833 0.00 0.00 0.00 2.73
473 477 4.343231 AGATGGATGCACACAAAATACCA 58.657 39.130 0.00 0.00 0.00 3.25
474 478 4.771577 AGATGGATGCACACAAAATACCAA 59.228 37.500 0.00 0.00 0.00 3.67
475 479 4.250116 TGGATGCACACAAAATACCAAC 57.750 40.909 0.00 0.00 0.00 3.77
476 480 3.006323 TGGATGCACACAAAATACCAACC 59.994 43.478 0.00 0.00 0.00 3.77
477 481 3.006323 GGATGCACACAAAATACCAACCA 59.994 43.478 0.00 0.00 0.00 3.67
478 482 4.322650 GGATGCACACAAAATACCAACCAT 60.323 41.667 0.00 0.00 0.00 3.55
479 483 3.987547 TGCACACAAAATACCAACCATG 58.012 40.909 0.00 0.00 0.00 3.66
480 484 3.386078 TGCACACAAAATACCAACCATGT 59.614 39.130 0.00 0.00 0.00 3.21
481 485 4.141846 TGCACACAAAATACCAACCATGTT 60.142 37.500 0.00 0.00 0.00 2.71
482 486 4.210955 GCACACAAAATACCAACCATGTTG 59.789 41.667 0.00 0.00 0.00 3.33
483 487 5.595885 CACACAAAATACCAACCATGTTGA 58.404 37.500 8.47 0.00 0.00 3.18
484 488 6.222389 CACACAAAATACCAACCATGTTGAT 58.778 36.000 8.47 0.00 0.00 2.57
485 489 6.145858 CACACAAAATACCAACCATGTTGATG 59.854 38.462 8.47 0.00 0.00 3.07
486 490 6.041409 ACACAAAATACCAACCATGTTGATGA 59.959 34.615 8.47 0.00 0.00 2.92
487 491 6.587226 CACAAAATACCAACCATGTTGATGAG 59.413 38.462 8.47 0.00 0.00 2.90
488 492 5.920193 AAATACCAACCATGTTGATGAGG 57.080 39.130 8.47 0.00 0.00 3.86
489 493 1.549203 ACCAACCATGTTGATGAGGC 58.451 50.000 8.47 0.00 0.00 4.70
490 494 0.819582 CCAACCATGTTGATGAGGCC 59.180 55.000 8.47 0.00 0.00 5.19
491 495 1.617804 CCAACCATGTTGATGAGGCCT 60.618 52.381 3.86 3.86 0.00 5.19
492 496 1.747355 CAACCATGTTGATGAGGCCTC 59.253 52.381 26.78 26.78 0.00 4.70
493 497 0.994247 ACCATGTTGATGAGGCCTCA 59.006 50.000 36.73 36.73 44.59 3.86
494 498 1.064906 ACCATGTTGATGAGGCCTCAG 60.065 52.381 37.03 23.91 43.61 3.35
495 499 1.211212 CCATGTTGATGAGGCCTCAGA 59.789 52.381 37.03 24.68 43.61 3.27
496 500 2.158652 CCATGTTGATGAGGCCTCAGAT 60.159 50.000 37.03 24.15 43.61 2.90
497 501 2.704464 TGTTGATGAGGCCTCAGATG 57.296 50.000 37.03 0.00 43.61 2.90
498 502 2.190538 TGTTGATGAGGCCTCAGATGA 58.809 47.619 37.03 21.28 43.61 2.92
499 503 2.775960 TGTTGATGAGGCCTCAGATGAT 59.224 45.455 37.03 22.62 43.61 2.45
500 504 3.139850 GTTGATGAGGCCTCAGATGATG 58.860 50.000 37.03 0.00 43.61 3.07
501 505 2.686119 TGATGAGGCCTCAGATGATGA 58.314 47.619 37.03 14.78 43.61 2.92
502 506 3.248888 TGATGAGGCCTCAGATGATGAT 58.751 45.455 37.03 20.35 43.61 2.45
503 507 3.008049 TGATGAGGCCTCAGATGATGATG 59.992 47.826 37.03 0.00 43.61 3.07
504 508 2.686119 TGAGGCCTCAGATGATGATGA 58.314 47.619 32.00 3.89 37.28 2.92
505 509 2.633481 TGAGGCCTCAGATGATGATGAG 59.367 50.000 32.00 0.00 42.14 2.90
506 510 1.348366 AGGCCTCAGATGATGATGAGC 59.652 52.381 0.00 0.00 41.33 4.26
507 511 1.348366 GGCCTCAGATGATGATGAGCT 59.652 52.381 0.00 0.00 41.33 4.09
508 512 2.418692 GCCTCAGATGATGATGAGCTG 58.581 52.381 0.00 0.00 41.33 4.24
509 513 2.418692 CCTCAGATGATGATGAGCTGC 58.581 52.381 0.00 0.00 41.33 5.25
510 514 2.224305 CCTCAGATGATGATGAGCTGCA 60.224 50.000 1.02 0.00 41.33 4.41
511 515 3.558109 CCTCAGATGATGATGAGCTGCAT 60.558 47.826 1.02 0.00 41.33 3.96
518 522 3.610637 GATGAGCTGCATCCTCCTC 57.389 57.895 1.02 7.69 46.23 3.71
519 523 0.319727 GATGAGCTGCATCCTCCTCG 60.320 60.000 1.02 0.00 46.23 4.63
520 524 1.756408 ATGAGCTGCATCCTCCTCGG 61.756 60.000 1.02 0.00 28.85 4.63
521 525 3.805891 GAGCTGCATCCTCCTCGGC 62.806 68.421 1.02 0.00 0.00 5.54
522 526 4.925861 GCTGCATCCTCCTCGGCC 62.926 72.222 0.00 0.00 0.00 6.13
523 527 3.473647 CTGCATCCTCCTCGGCCA 61.474 66.667 2.24 0.00 0.00 5.36
524 528 2.769621 TGCATCCTCCTCGGCCAT 60.770 61.111 2.24 0.00 0.00 4.40
525 529 2.281345 GCATCCTCCTCGGCCATG 60.281 66.667 2.24 0.00 0.00 3.66
526 530 2.429058 CATCCTCCTCGGCCATGG 59.571 66.667 7.63 7.63 0.00 3.66
527 531 3.564218 ATCCTCCTCGGCCATGGC 61.564 66.667 29.47 29.47 41.06 4.40
553 557 2.436469 CCGCTGCTGCACACCATA 60.436 61.111 16.29 0.00 39.64 2.74
554 558 2.753966 CCGCTGCTGCACACCATAC 61.754 63.158 16.29 0.00 39.64 2.39
555 559 2.787249 GCTGCTGCACACCATACG 59.213 61.111 11.11 0.00 39.41 3.06
556 560 2.787249 CTGCTGCACACCATACGC 59.213 61.111 0.00 0.00 0.00 4.42
557 561 2.745884 TGCTGCACACCATACGCC 60.746 61.111 0.00 0.00 0.00 5.68
558 562 2.745884 GCTGCACACCATACGCCA 60.746 61.111 0.00 0.00 0.00 5.69
559 563 2.114670 GCTGCACACCATACGCCAT 61.115 57.895 0.00 0.00 0.00 4.40
560 564 1.723273 CTGCACACCATACGCCATG 59.277 57.895 0.00 0.00 0.00 3.66
567 571 4.557554 CATACGCCATGGGAAGCA 57.442 55.556 15.13 0.00 0.00 3.91
568 572 2.792500 CATACGCCATGGGAAGCAA 58.208 52.632 15.13 0.00 0.00 3.91
569 573 1.102154 CATACGCCATGGGAAGCAAA 58.898 50.000 15.13 0.00 0.00 3.68
570 574 1.066002 CATACGCCATGGGAAGCAAAG 59.934 52.381 15.13 0.00 0.00 2.77
571 575 0.679640 TACGCCATGGGAAGCAAAGG 60.680 55.000 15.13 0.00 0.00 3.11
572 576 1.978617 CGCCATGGGAAGCAAAGGT 60.979 57.895 15.13 0.00 0.00 3.50
573 577 1.593265 GCCATGGGAAGCAAAGGTG 59.407 57.895 15.13 0.00 0.00 4.00
574 578 0.899717 GCCATGGGAAGCAAAGGTGA 60.900 55.000 15.13 0.00 0.00 4.02
575 579 1.180029 CCATGGGAAGCAAAGGTGAG 58.820 55.000 2.85 0.00 0.00 3.51
576 580 1.180029 CATGGGAAGCAAAGGTGAGG 58.820 55.000 0.00 0.00 0.00 3.86
577 581 1.075601 ATGGGAAGCAAAGGTGAGGA 58.924 50.000 0.00 0.00 0.00 3.71
578 582 0.401738 TGGGAAGCAAAGGTGAGGAG 59.598 55.000 0.00 0.00 0.00 3.69
579 583 0.322906 GGGAAGCAAAGGTGAGGAGG 60.323 60.000 0.00 0.00 0.00 4.30
580 584 0.693049 GGAAGCAAAGGTGAGGAGGA 59.307 55.000 0.00 0.00 0.00 3.71
581 585 1.339535 GGAAGCAAAGGTGAGGAGGAG 60.340 57.143 0.00 0.00 0.00 3.69
582 586 0.695347 AAGCAAAGGTGAGGAGGAGG 59.305 55.000 0.00 0.00 0.00 4.30
583 587 0.178891 AGCAAAGGTGAGGAGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
584 588 0.035915 GCAAAGGTGAGGAGGAGGAC 60.036 60.000 0.00 0.00 0.00 3.85
585 589 0.247736 CAAAGGTGAGGAGGAGGACG 59.752 60.000 0.00 0.00 0.00 4.79
586 590 0.114560 AAAGGTGAGGAGGAGGACGA 59.885 55.000 0.00 0.00 0.00 4.20
587 591 0.323908 AAGGTGAGGAGGAGGACGAG 60.324 60.000 0.00 0.00 0.00 4.18
588 592 1.755008 GGTGAGGAGGAGGACGAGG 60.755 68.421 0.00 0.00 0.00 4.63
589 593 1.755008 GTGAGGAGGAGGACGAGGG 60.755 68.421 0.00 0.00 0.00 4.30
590 594 2.835895 GAGGAGGAGGACGAGGGC 60.836 72.222 0.00 0.00 0.00 5.19
591 595 4.824515 AGGAGGAGGACGAGGGCG 62.825 72.222 0.00 0.00 44.79 6.13
592 596 4.816984 GGAGGAGGACGAGGGCGA 62.817 72.222 0.00 0.00 41.64 5.54
593 597 3.213402 GAGGAGGACGAGGGCGAG 61.213 72.222 0.00 0.00 41.64 5.03
594 598 3.700831 GAGGAGGACGAGGGCGAGA 62.701 68.421 0.00 0.00 41.64 4.04
595 599 3.213402 GGAGGACGAGGGCGAGAG 61.213 72.222 0.00 0.00 41.64 3.20
596 600 2.438795 GAGGACGAGGGCGAGAGT 60.439 66.667 0.00 0.00 41.64 3.24
597 601 2.752238 AGGACGAGGGCGAGAGTG 60.752 66.667 0.00 0.00 41.64 3.51
598 602 4.500116 GGACGAGGGCGAGAGTGC 62.500 72.222 0.00 0.00 41.64 4.40
606 610 4.193653 GCGAGAGTGCCTTTCCTC 57.806 61.111 0.00 0.00 0.00 3.71
607 611 1.293498 GCGAGAGTGCCTTTCCTCA 59.707 57.895 0.00 0.00 0.00 3.86
608 612 0.107945 GCGAGAGTGCCTTTCCTCAT 60.108 55.000 0.00 0.00 0.00 2.90
609 613 1.933247 CGAGAGTGCCTTTCCTCATC 58.067 55.000 0.00 0.00 0.00 2.92
610 614 1.480137 CGAGAGTGCCTTTCCTCATCT 59.520 52.381 0.00 0.00 0.00 2.90
611 615 2.093764 CGAGAGTGCCTTTCCTCATCTT 60.094 50.000 0.00 0.00 0.00 2.40
612 616 3.269178 GAGAGTGCCTTTCCTCATCTTG 58.731 50.000 0.00 0.00 0.00 3.02
613 617 2.026449 AGAGTGCCTTTCCTCATCTTGG 60.026 50.000 0.00 0.00 0.00 3.61
614 618 1.005215 AGTGCCTTTCCTCATCTTGGG 59.995 52.381 0.00 0.00 0.00 4.12
615 619 0.332632 TGCCTTTCCTCATCTTGGGG 59.667 55.000 0.00 0.00 40.17 4.96
631 635 6.073447 TCTTGGGGATTGAGTAAATAGCAA 57.927 37.500 0.00 0.00 0.00 3.91
738 744 3.715871 AAAAACCCAAATTGCCCGG 57.284 47.368 0.00 0.00 0.00 5.73
740 746 0.840617 AAAACCCAAATTGCCCGGTT 59.159 45.000 0.00 0.28 40.32 4.44
750 756 0.321021 TTGCCCGGTTCTAGCGTTTA 59.679 50.000 0.00 0.00 37.40 2.01
929 966 0.463295 CTGCCCGCACTCATTCTCAT 60.463 55.000 0.00 0.00 0.00 2.90
949 997 4.017591 TCATTCTCACTCTCCTCTCCTCTT 60.018 45.833 0.00 0.00 0.00 2.85
957 1005 3.515104 CTCTCCTCTCCTCTTTGCTCTTT 59.485 47.826 0.00 0.00 0.00 2.52
1025 1073 2.415983 TCCTGGAATGACGGGGATAT 57.584 50.000 0.00 0.00 37.50 1.63
1114 1186 2.771943 TGAGCTAGGGTTAGGGTTCATG 59.228 50.000 0.00 0.00 0.00 3.07
1205 1277 3.494223 GGCAGGTTTATGGTTGCTGTTTT 60.494 43.478 0.00 0.00 36.79 2.43
1239 1311 5.957842 TGTATGCTTGAAAACTAGGGTTG 57.042 39.130 0.00 0.00 35.63 3.77
1308 1385 3.882888 CTGGTTTTGTGAGCTAAGGTGAA 59.117 43.478 0.00 0.00 0.00 3.18
1313 1390 5.452078 TTTGTGAGCTAAGGTGAATTTGG 57.548 39.130 0.00 0.00 0.00 3.28
1323 1400 5.612725 AAGGTGAATTTGGTGATGTGTTT 57.387 34.783 0.00 0.00 0.00 2.83
1324 1401 4.947645 AGGTGAATTTGGTGATGTGTTTG 58.052 39.130 0.00 0.00 0.00 2.93
1359 1436 3.314331 ACCACCGTGGAGCCTCTG 61.314 66.667 24.80 0.00 40.96 3.35
1362 1439 1.541310 CCACCGTGGAGCCTCTGTTA 61.541 60.000 12.68 0.00 40.96 2.41
1448 1525 4.837860 TGTGGCATTTGAAGGAACCTTAAT 59.162 37.500 6.06 1.46 36.26 1.40
1454 1531 6.934083 GCATTTGAAGGAACCTTAATTGGAAA 59.066 34.615 6.06 1.01 36.26 3.13
1555 2358 2.146342 AGGATGACAAGTTGCTGTTCG 58.854 47.619 1.81 0.00 0.00 3.95
1563 2366 0.110486 AGTTGCTGTTCGGAACCCAT 59.890 50.000 17.62 0.00 44.16 4.00
1609 2430 6.166982 GCTCTTCTGAACCTACACTGTATTT 58.833 40.000 0.00 0.00 0.00 1.40
1719 2540 6.052360 TCTGTGAATGTACTTGTACAAGCAA 58.948 36.000 30.97 18.97 41.99 3.91
1732 2553 1.136891 ACAAGCAAGTTGGGTTTCAGC 59.863 47.619 4.75 0.00 40.90 4.26
1737 2558 4.662278 AGCAAGTTGGGTTTCAGCTATAA 58.338 39.130 4.75 0.00 35.84 0.98
1738 2559 4.459337 AGCAAGTTGGGTTTCAGCTATAAC 59.541 41.667 4.75 0.00 35.84 1.89
1778 2599 6.602009 ACAACATATTCAGTTTACCTAAGCCC 59.398 38.462 0.00 0.00 0.00 5.19
1787 2608 2.047769 TACCTAAGCCCCACCTTCAA 57.952 50.000 0.00 0.00 0.00 2.69
1805 2626 8.341173 CACCTTCAATTTCTTAGTCTGATATGC 58.659 37.037 0.00 0.00 0.00 3.14
1912 2733 2.991540 GGTTGACAAGCCCTGGCC 60.992 66.667 6.08 0.00 43.17 5.36
2098 3035 3.972133 AGATGTTTGATTGGCAGGATGA 58.028 40.909 0.00 0.00 39.69 2.92
2104 3041 1.074405 TGATTGGCAGGATGATAGGGC 59.926 52.381 0.00 0.00 39.69 5.19
2155 3092 6.047511 TGAGGAGGAAGAATTTGAGAAGAG 57.952 41.667 0.00 0.00 0.00 2.85
2294 3447 2.627699 GGCAATGAAGGAGGTTGAACAA 59.372 45.455 0.00 0.00 0.00 2.83
2429 4479 3.198409 TCATGAAGTGTGTTCTGCAGT 57.802 42.857 14.67 0.00 0.00 4.40
2432 4482 1.401552 TGAAGTGTGTTCTGCAGTTGC 59.598 47.619 14.67 5.83 42.50 4.17
2797 4893 3.011517 CACCCACCCTCCTCCCTG 61.012 72.222 0.00 0.00 0.00 4.45
2798 4894 3.542602 ACCCACCCTCCTCCCTGT 61.543 66.667 0.00 0.00 0.00 4.00
2799 4895 2.689034 CCCACCCTCCTCCCTGTC 60.689 72.222 0.00 0.00 0.00 3.51
2800 4896 2.452114 CCACCCTCCTCCCTGTCT 59.548 66.667 0.00 0.00 0.00 3.41
2888 4985 2.125350 GGAAGAGGAGGCAGTGCG 60.125 66.667 9.45 0.00 0.00 5.34
2942 5039 2.043652 GGTGCCCATGCCATCAGT 60.044 61.111 0.00 0.00 36.33 3.41
3024 5121 1.168714 GCAACCCAGATGAGTTCACC 58.831 55.000 0.00 0.00 0.00 4.02
3128 5225 1.055849 TCTACCAGAGCAAAGTGGCA 58.944 50.000 0.00 0.00 37.34 4.92
3131 5228 0.111061 ACCAGAGCAAAGTGGCATCA 59.889 50.000 0.00 0.00 37.34 3.07
3135 5232 3.306502 CCAGAGCAAAGTGGCATCATTTT 60.307 43.478 0.00 0.00 33.88 1.82
3296 5407 8.809478 TGAATAAATGAATCAATGTTTGCATCG 58.191 29.630 0.00 0.00 33.50 3.84
3388 5557 8.748412 AGCAAGCAAATACATAGGTTTCATAAA 58.252 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.533730 TGGAAATCGACTGGCAAGATATATT 58.466 36.000 0.00 0.00 0.00 1.28
1 2 6.114187 TGGAAATCGACTGGCAAGATATAT 57.886 37.500 0.00 0.00 0.00 0.86
2 3 5.545063 TGGAAATCGACTGGCAAGATATA 57.455 39.130 0.00 0.00 0.00 0.86
5 6 2.787473 TGGAAATCGACTGGCAAGAT 57.213 45.000 0.00 0.00 0.00 2.40
6 7 2.787473 ATGGAAATCGACTGGCAAGA 57.213 45.000 0.00 0.00 0.00 3.02
7 8 3.855689 AAATGGAAATCGACTGGCAAG 57.144 42.857 0.00 0.00 0.00 4.01
8 9 4.599047 AAAAATGGAAATCGACTGGCAA 57.401 36.364 0.00 0.00 0.00 4.52
9 10 5.475220 TCTTAAAAATGGAAATCGACTGGCA 59.525 36.000 0.00 0.00 0.00 4.92
10 11 5.949735 TCTTAAAAATGGAAATCGACTGGC 58.050 37.500 0.00 0.00 0.00 4.85
11 12 8.986477 ATTTCTTAAAAATGGAAATCGACTGG 57.014 30.769 0.00 0.00 35.57 4.00
15 16 8.716909 GCCAAATTTCTTAAAAATGGAAATCGA 58.283 29.630 9.65 0.00 38.30 3.59
16 17 8.502387 TGCCAAATTTCTTAAAAATGGAAATCG 58.498 29.630 9.65 0.00 38.30 3.34
19 20 8.081025 GCATGCCAAATTTCTTAAAAATGGAAA 58.919 29.630 6.36 0.00 37.50 3.13
20 21 7.230108 TGCATGCCAAATTTCTTAAAAATGGAA 59.770 29.630 16.68 2.04 37.50 3.53
21 22 6.713903 TGCATGCCAAATTTCTTAAAAATGGA 59.286 30.769 16.68 0.00 37.50 3.41
22 23 6.910995 TGCATGCCAAATTTCTTAAAAATGG 58.089 32.000 16.68 0.00 37.96 3.16
25 26 9.890352 GTTTATGCATGCCAAATTTCTTAAAAA 57.110 25.926 16.68 0.00 0.00 1.94
26 27 9.060347 TGTTTATGCATGCCAAATTTCTTAAAA 57.940 25.926 16.68 0.00 0.00 1.52
27 28 8.613060 TGTTTATGCATGCCAAATTTCTTAAA 57.387 26.923 16.68 3.16 0.00 1.52
28 29 8.613060 TTGTTTATGCATGCCAAATTTCTTAA 57.387 26.923 16.68 0.00 0.00 1.85
29 30 7.333921 CCTTGTTTATGCATGCCAAATTTCTTA 59.666 33.333 16.68 0.00 0.00 2.10
30 31 6.149807 CCTTGTTTATGCATGCCAAATTTCTT 59.850 34.615 16.68 0.00 0.00 2.52
31 32 5.644636 CCTTGTTTATGCATGCCAAATTTCT 59.355 36.000 16.68 0.00 0.00 2.52
32 33 5.163733 CCCTTGTTTATGCATGCCAAATTTC 60.164 40.000 16.68 4.87 0.00 2.17
33 34 4.701171 CCCTTGTTTATGCATGCCAAATTT 59.299 37.500 16.68 0.00 0.00 1.82
34 35 4.019501 TCCCTTGTTTATGCATGCCAAATT 60.020 37.500 16.68 0.00 0.00 1.82
35 36 3.518705 TCCCTTGTTTATGCATGCCAAAT 59.481 39.130 16.68 4.59 0.00 2.32
36 37 2.902486 TCCCTTGTTTATGCATGCCAAA 59.098 40.909 16.68 12.61 0.00 3.28
37 38 2.533916 TCCCTTGTTTATGCATGCCAA 58.466 42.857 16.68 10.55 0.00 4.52
38 39 2.228545 TCCCTTGTTTATGCATGCCA 57.771 45.000 16.68 1.80 0.00 4.92
39 40 3.118665 ACATTCCCTTGTTTATGCATGCC 60.119 43.478 16.68 0.00 0.00 4.40
40 41 3.866910 CACATTCCCTTGTTTATGCATGC 59.133 43.478 11.82 11.82 0.00 4.06
41 42 5.104374 GTCACATTCCCTTGTTTATGCATG 58.896 41.667 10.16 0.00 0.00 4.06
42 43 5.018809 AGTCACATTCCCTTGTTTATGCAT 58.981 37.500 3.79 3.79 0.00 3.96
43 44 4.406456 AGTCACATTCCCTTGTTTATGCA 58.594 39.130 0.00 0.00 0.00 3.96
44 45 5.163513 CAAGTCACATTCCCTTGTTTATGC 58.836 41.667 0.00 0.00 32.76 3.14
45 46 6.331369 ACAAGTCACATTCCCTTGTTTATG 57.669 37.500 0.00 0.00 44.68 1.90
46 47 7.458397 TCTACAAGTCACATTCCCTTGTTTAT 58.542 34.615 9.26 0.00 44.68 1.40
47 48 6.833041 TCTACAAGTCACATTCCCTTGTTTA 58.167 36.000 9.26 0.00 44.68 2.01
48 49 5.690865 TCTACAAGTCACATTCCCTTGTTT 58.309 37.500 9.26 0.00 44.68 2.83
49 50 5.304686 TCTACAAGTCACATTCCCTTGTT 57.695 39.130 9.26 0.00 44.68 2.83
51 52 5.355350 GGATTCTACAAGTCACATTCCCTTG 59.645 44.000 0.00 0.00 41.02 3.61
52 53 5.014123 TGGATTCTACAAGTCACATTCCCTT 59.986 40.000 0.00 0.00 0.00 3.95
53 54 4.536090 TGGATTCTACAAGTCACATTCCCT 59.464 41.667 0.00 0.00 0.00 4.20
54 55 4.843728 TGGATTCTACAAGTCACATTCCC 58.156 43.478 0.00 0.00 0.00 3.97
55 56 6.115446 TGATGGATTCTACAAGTCACATTCC 58.885 40.000 0.00 0.00 0.00 3.01
56 57 6.820656 ACTGATGGATTCTACAAGTCACATTC 59.179 38.462 0.00 0.00 0.00 2.67
57 58 6.715280 ACTGATGGATTCTACAAGTCACATT 58.285 36.000 0.00 0.00 0.00 2.71
58 59 6.070596 TGACTGATGGATTCTACAAGTCACAT 60.071 38.462 10.69 0.00 0.00 3.21
59 60 5.245977 TGACTGATGGATTCTACAAGTCACA 59.754 40.000 10.69 0.00 0.00 3.58
60 61 5.724328 TGACTGATGGATTCTACAAGTCAC 58.276 41.667 10.69 0.00 0.00 3.67
61 62 6.014242 ACTTGACTGATGGATTCTACAAGTCA 60.014 38.462 10.69 10.69 37.72 3.41
62 63 6.312426 CACTTGACTGATGGATTCTACAAGTC 59.688 42.308 0.00 6.87 38.83 3.01
63 64 6.014242 TCACTTGACTGATGGATTCTACAAGT 60.014 38.462 0.00 0.00 40.02 3.16
64 65 6.401394 TCACTTGACTGATGGATTCTACAAG 58.599 40.000 0.00 0.00 36.51 3.16
65 66 6.358974 TCACTTGACTGATGGATTCTACAA 57.641 37.500 0.00 0.00 0.00 2.41
66 67 6.550938 ATCACTTGACTGATGGATTCTACA 57.449 37.500 0.00 0.00 29.23 2.74
67 68 6.481644 GGAATCACTTGACTGATGGATTCTAC 59.518 42.308 0.00 0.00 40.09 2.59
68 69 6.156775 TGGAATCACTTGACTGATGGATTCTA 59.843 38.462 0.00 0.00 40.09 2.10
69 70 5.045359 TGGAATCACTTGACTGATGGATTCT 60.045 40.000 0.00 0.00 40.09 2.40
70 71 5.188434 TGGAATCACTTGACTGATGGATTC 58.812 41.667 0.00 0.00 39.71 2.52
71 72 5.183530 TGGAATCACTTGACTGATGGATT 57.816 39.130 0.00 0.00 30.92 3.01
72 73 4.849813 TGGAATCACTTGACTGATGGAT 57.150 40.909 0.00 0.00 30.92 3.41
73 74 4.639078 TTGGAATCACTTGACTGATGGA 57.361 40.909 0.00 0.00 30.92 3.41
74 75 6.600822 AGTTATTGGAATCACTTGACTGATGG 59.399 38.462 0.00 0.00 30.92 3.51
75 76 7.621428 AGTTATTGGAATCACTTGACTGATG 57.379 36.000 0.00 0.00 30.92 3.07
76 77 9.911788 ATAAGTTATTGGAATCACTTGACTGAT 57.088 29.630 8.55 0.00 34.65 2.90
95 96 9.740239 GTCGGTATCAGACAATTGTATAAGTTA 57.260 33.333 11.95 0.00 38.42 2.24
96 97 7.434307 CGTCGGTATCAGACAATTGTATAAGTT 59.566 37.037 11.95 0.00 38.46 2.66
97 98 6.916387 CGTCGGTATCAGACAATTGTATAAGT 59.084 38.462 11.95 0.46 38.46 2.24
98 99 7.136772 TCGTCGGTATCAGACAATTGTATAAG 58.863 38.462 11.95 0.00 38.46 1.73
99 100 7.030075 TCGTCGGTATCAGACAATTGTATAA 57.970 36.000 11.95 0.00 38.46 0.98
100 101 6.622833 TCGTCGGTATCAGACAATTGTATA 57.377 37.500 11.95 3.21 38.46 1.47
101 102 5.509716 TCGTCGGTATCAGACAATTGTAT 57.490 39.130 11.95 5.24 38.46 2.29
102 103 4.968812 TCGTCGGTATCAGACAATTGTA 57.031 40.909 11.95 0.00 38.46 2.41
103 104 3.861276 TCGTCGGTATCAGACAATTGT 57.139 42.857 11.78 11.78 38.46 2.71
104 105 5.524511 TTTTCGTCGGTATCAGACAATTG 57.475 39.130 3.24 3.24 38.46 2.32
105 106 5.872617 TGATTTTCGTCGGTATCAGACAATT 59.127 36.000 0.00 0.00 38.46 2.32
106 107 5.416083 TGATTTTCGTCGGTATCAGACAAT 58.584 37.500 0.00 0.00 38.46 2.71
107 108 4.811908 TGATTTTCGTCGGTATCAGACAA 58.188 39.130 0.00 0.00 38.46 3.18
108 109 4.421058 CTGATTTTCGTCGGTATCAGACA 58.579 43.478 18.87 0.00 44.19 3.41
109 110 3.797256 CCTGATTTTCGTCGGTATCAGAC 59.203 47.826 22.43 0.00 44.19 3.51
110 111 3.737047 GCCTGATTTTCGTCGGTATCAGA 60.737 47.826 22.43 0.00 44.19 3.27
111 112 2.540101 GCCTGATTTTCGTCGGTATCAG 59.460 50.000 17.65 17.65 42.19 2.90
112 113 2.093921 TGCCTGATTTTCGTCGGTATCA 60.094 45.455 0.00 0.00 0.00 2.15
113 114 2.546778 TGCCTGATTTTCGTCGGTATC 58.453 47.619 0.00 0.00 0.00 2.24
114 115 2.684001 TGCCTGATTTTCGTCGGTAT 57.316 45.000 0.00 0.00 0.00 2.73
115 116 2.343101 CTTGCCTGATTTTCGTCGGTA 58.657 47.619 0.00 0.00 0.00 4.02
116 117 1.156736 CTTGCCTGATTTTCGTCGGT 58.843 50.000 0.00 0.00 0.00 4.69
117 118 0.179189 GCTTGCCTGATTTTCGTCGG 60.179 55.000 0.00 0.00 0.00 4.79
118 119 0.516877 TGCTTGCCTGATTTTCGTCG 59.483 50.000 0.00 0.00 0.00 5.12
119 120 1.537202 ACTGCTTGCCTGATTTTCGTC 59.463 47.619 0.00 0.00 0.00 4.20
120 121 1.609208 ACTGCTTGCCTGATTTTCGT 58.391 45.000 0.00 0.00 0.00 3.85
121 122 2.712057 AACTGCTTGCCTGATTTTCG 57.288 45.000 0.00 0.00 0.00 3.46
122 123 3.985925 CAGAAACTGCTTGCCTGATTTTC 59.014 43.478 0.00 0.00 0.00 2.29
123 124 3.638160 TCAGAAACTGCTTGCCTGATTTT 59.362 39.130 0.00 0.00 0.00 1.82
124 125 3.225104 TCAGAAACTGCTTGCCTGATTT 58.775 40.909 0.00 0.00 0.00 2.17
125 126 2.867624 TCAGAAACTGCTTGCCTGATT 58.132 42.857 0.00 0.00 0.00 2.57
126 127 2.574006 TCAGAAACTGCTTGCCTGAT 57.426 45.000 0.00 0.00 0.00 2.90
127 128 2.346766 TTCAGAAACTGCTTGCCTGA 57.653 45.000 0.00 0.00 32.67 3.86
128 129 2.735823 GTTTCAGAAACTGCTTGCCTG 58.264 47.619 17.48 0.00 38.35 4.85
138 139 2.475200 AGCGTTGCAGTTTCAGAAAC 57.525 45.000 17.11 17.11 41.69 2.78
139 140 2.939756 TGTAGCGTTGCAGTTTCAGAAA 59.060 40.909 0.00 0.00 0.00 2.52
140 141 2.556257 TGTAGCGTTGCAGTTTCAGAA 58.444 42.857 0.00 0.00 0.00 3.02
141 142 2.232756 TGTAGCGTTGCAGTTTCAGA 57.767 45.000 0.00 0.00 0.00 3.27
142 143 2.287915 ACTTGTAGCGTTGCAGTTTCAG 59.712 45.455 0.00 0.00 0.00 3.02
143 144 2.285083 ACTTGTAGCGTTGCAGTTTCA 58.715 42.857 0.00 0.00 0.00 2.69
144 145 3.035942 CAACTTGTAGCGTTGCAGTTTC 58.964 45.455 0.00 0.00 35.82 2.78
145 146 2.680841 TCAACTTGTAGCGTTGCAGTTT 59.319 40.909 0.00 0.00 41.05 2.66
146 147 2.285083 TCAACTTGTAGCGTTGCAGTT 58.715 42.857 0.00 0.00 41.05 3.16
147 148 1.867233 CTCAACTTGTAGCGTTGCAGT 59.133 47.619 0.00 0.00 41.05 4.40
148 149 1.398960 GCTCAACTTGTAGCGTTGCAG 60.399 52.381 0.00 0.00 41.05 4.41
149 150 0.586319 GCTCAACTTGTAGCGTTGCA 59.414 50.000 0.00 0.00 41.05 4.08
150 151 0.586319 TGCTCAACTTGTAGCGTTGC 59.414 50.000 0.00 0.00 41.77 4.17
151 152 1.069906 GGTGCTCAACTTGTAGCGTTG 60.070 52.381 0.00 0.00 41.77 4.10
152 153 1.226746 GGTGCTCAACTTGTAGCGTT 58.773 50.000 8.01 0.00 41.77 4.84
153 154 0.944311 CGGTGCTCAACTTGTAGCGT 60.944 55.000 8.01 0.00 41.77 5.07
154 155 0.666274 TCGGTGCTCAACTTGTAGCG 60.666 55.000 0.00 0.00 41.77 4.26
155 156 1.071605 CTCGGTGCTCAACTTGTAGC 58.928 55.000 6.37 6.37 39.25 3.58
156 157 2.229062 TCTCTCGGTGCTCAACTTGTAG 59.771 50.000 0.00 0.00 0.00 2.74
157 158 2.235891 TCTCTCGGTGCTCAACTTGTA 58.764 47.619 0.00 0.00 0.00 2.41
158 159 1.040646 TCTCTCGGTGCTCAACTTGT 58.959 50.000 0.00 0.00 0.00 3.16
159 160 2.064762 CTTCTCTCGGTGCTCAACTTG 58.935 52.381 0.00 0.00 0.00 3.16
163 164 0.603569 GTCCTTCTCTCGGTGCTCAA 59.396 55.000 0.00 0.00 0.00 3.02
169 170 1.536943 GCCACTGTCCTTCTCTCGGT 61.537 60.000 0.00 0.00 0.00 4.69
170 171 1.216710 GCCACTGTCCTTCTCTCGG 59.783 63.158 0.00 0.00 0.00 4.63
175 176 1.131638 TTCACAGCCACTGTCCTTCT 58.868 50.000 0.00 0.00 43.43 2.85
183 184 2.193536 GCCGGTTTTCACAGCCACT 61.194 57.895 1.90 0.00 0.00 4.00
186 187 4.700365 GCGCCGGTTTTCACAGCC 62.700 66.667 1.90 0.00 0.00 4.85
199 200 2.985847 AACCTCTGCTTTGGCGCC 60.986 61.111 22.73 22.73 42.25 6.53
231 232 3.869473 GAACGGCGGTACTGTGGCA 62.869 63.158 13.24 0.00 38.15 4.92
240 241 2.184167 CAACACCAAGAACGGCGGT 61.184 57.895 13.24 3.35 0.00 5.68
282 283 3.475192 GGTAGGAACACCGGTGGT 58.525 61.111 36.47 33.27 35.62 4.16
306 310 4.527583 GCAGGCGGCTCTGGAGAG 62.528 72.222 9.32 0.00 44.75 3.20
333 337 2.233305 TACAGACTCCCAGGAAGGTC 57.767 55.000 0.00 0.00 34.66 3.85
344 348 2.962421 CAAGGGGAGAGGATACAGACTC 59.038 54.545 0.00 0.00 41.41 3.36
361 365 2.031120 TCACTTTGCAGAAACCCAAGG 58.969 47.619 0.00 0.00 0.00 3.61
362 366 3.799281 TTCACTTTGCAGAAACCCAAG 57.201 42.857 0.00 0.00 0.00 3.61
363 367 3.118811 CCTTTCACTTTGCAGAAACCCAA 60.119 43.478 0.00 0.00 31.11 4.12
364 368 2.430332 CCTTTCACTTTGCAGAAACCCA 59.570 45.455 0.00 0.00 31.11 4.51
365 369 2.803133 GCCTTTCACTTTGCAGAAACCC 60.803 50.000 0.00 0.00 31.11 4.11
366 370 2.473816 GCCTTTCACTTTGCAGAAACC 58.526 47.619 0.00 0.00 31.11 3.27
367 371 2.119457 CGCCTTTCACTTTGCAGAAAC 58.881 47.619 0.00 0.00 31.11 2.78
368 372 1.066908 CCGCCTTTCACTTTGCAGAAA 59.933 47.619 0.00 0.00 33.17 2.52
369 373 0.667993 CCGCCTTTCACTTTGCAGAA 59.332 50.000 0.00 0.00 0.00 3.02
370 374 1.795170 GCCGCCTTTCACTTTGCAGA 61.795 55.000 0.00 0.00 0.00 4.26
371 375 1.372128 GCCGCCTTTCACTTTGCAG 60.372 57.895 0.00 0.00 0.00 4.41
372 376 1.670949 TTGCCGCCTTTCACTTTGCA 61.671 50.000 0.00 0.00 0.00 4.08
373 377 0.319813 ATTGCCGCCTTTCACTTTGC 60.320 50.000 0.00 0.00 0.00 3.68
374 378 2.061028 GAATTGCCGCCTTTCACTTTG 58.939 47.619 0.00 0.00 0.00 2.77
375 379 1.686052 TGAATTGCCGCCTTTCACTTT 59.314 42.857 1.95 0.00 0.00 2.66
376 380 1.327303 TGAATTGCCGCCTTTCACTT 58.673 45.000 1.95 0.00 0.00 3.16
377 381 1.203052 CATGAATTGCCGCCTTTCACT 59.797 47.619 7.11 0.00 32.61 3.41
378 382 1.632422 CATGAATTGCCGCCTTTCAC 58.368 50.000 7.11 0.00 32.61 3.18
379 383 0.108709 GCATGAATTGCCGCCTTTCA 60.109 50.000 0.00 7.34 46.15 2.69
380 384 2.669419 GCATGAATTGCCGCCTTTC 58.331 52.632 0.00 0.00 46.15 2.62
381 385 4.917474 GCATGAATTGCCGCCTTT 57.083 50.000 0.00 0.00 46.15 3.11
390 394 8.715088 GCAAAATCTCTTACAAAAGCATGAATT 58.285 29.630 0.00 0.00 32.36 2.17
391 395 8.092687 AGCAAAATCTCTTACAAAAGCATGAAT 58.907 29.630 0.00 0.00 32.36 2.57
392 396 7.436118 AGCAAAATCTCTTACAAAAGCATGAA 58.564 30.769 0.00 0.00 32.36 2.57
393 397 6.985117 AGCAAAATCTCTTACAAAAGCATGA 58.015 32.000 0.00 0.00 32.36 3.07
394 398 7.383029 TGAAGCAAAATCTCTTACAAAAGCATG 59.617 33.333 0.00 0.00 32.36 4.06
395 399 7.436118 TGAAGCAAAATCTCTTACAAAAGCAT 58.564 30.769 0.00 0.00 32.36 3.79
396 400 6.804677 TGAAGCAAAATCTCTTACAAAAGCA 58.195 32.000 0.00 0.00 32.36 3.91
397 401 7.596248 TCATGAAGCAAAATCTCTTACAAAAGC 59.404 33.333 0.00 0.00 32.36 3.51
398 402 8.909671 GTCATGAAGCAAAATCTCTTACAAAAG 58.090 33.333 0.00 0.00 0.00 2.27
399 403 8.412456 TGTCATGAAGCAAAATCTCTTACAAAA 58.588 29.630 0.00 0.00 0.00 2.44
400 404 7.939782 TGTCATGAAGCAAAATCTCTTACAAA 58.060 30.769 0.00 0.00 0.00 2.83
401 405 7.509141 TGTCATGAAGCAAAATCTCTTACAA 57.491 32.000 0.00 0.00 0.00 2.41
402 406 7.509141 TTGTCATGAAGCAAAATCTCTTACA 57.491 32.000 0.00 0.00 0.00 2.41
403 407 8.239314 TGATTGTCATGAAGCAAAATCTCTTAC 58.761 33.333 0.00 0.00 0.00 2.34
404 408 8.339344 TGATTGTCATGAAGCAAAATCTCTTA 57.661 30.769 0.00 0.00 0.00 2.10
405 409 7.223260 TGATTGTCATGAAGCAAAATCTCTT 57.777 32.000 0.00 0.00 0.00 2.85
406 410 6.829229 TGATTGTCATGAAGCAAAATCTCT 57.171 33.333 0.00 0.00 0.00 3.10
407 411 7.310664 TCTTGATTGTCATGAAGCAAAATCTC 58.689 34.615 0.00 0.00 31.21 2.75
408 412 7.223260 TCTTGATTGTCATGAAGCAAAATCT 57.777 32.000 0.00 0.00 31.21 2.40
409 413 7.878477 TTCTTGATTGTCATGAAGCAAAATC 57.122 32.000 0.00 3.52 36.17 2.17
410 414 8.842358 ATTTCTTGATTGTCATGAAGCAAAAT 57.158 26.923 0.00 0.00 40.23 1.82
411 415 8.665643 AATTTCTTGATTGTCATGAAGCAAAA 57.334 26.923 0.00 0.00 40.23 2.44
412 416 9.414295 CTAATTTCTTGATTGTCATGAAGCAAA 57.586 29.630 0.00 0.00 40.23 3.68
413 417 8.795513 TCTAATTTCTTGATTGTCATGAAGCAA 58.204 29.630 0.00 0.00 40.23 3.91
414 418 8.339344 TCTAATTTCTTGATTGTCATGAAGCA 57.661 30.769 0.00 0.00 40.23 3.91
415 419 8.671921 TCTCTAATTTCTTGATTGTCATGAAGC 58.328 33.333 0.00 0.00 40.23 3.86
417 421 8.671921 GCTCTCTAATTTCTTGATTGTCATGAA 58.328 33.333 0.00 4.70 38.32 2.57
418 422 7.825761 TGCTCTCTAATTTCTTGATTGTCATGA 59.174 33.333 0.00 0.00 0.00 3.07
419 423 7.982224 TGCTCTCTAATTTCTTGATTGTCATG 58.018 34.615 0.00 0.00 0.00 3.07
420 424 8.571461 TTGCTCTCTAATTTCTTGATTGTCAT 57.429 30.769 0.00 0.00 0.00 3.06
421 425 7.984422 TTGCTCTCTAATTTCTTGATTGTCA 57.016 32.000 0.00 0.00 0.00 3.58
422 426 8.725148 TCTTTGCTCTCTAATTTCTTGATTGTC 58.275 33.333 0.00 0.00 0.00 3.18
423 427 8.627208 TCTTTGCTCTCTAATTTCTTGATTGT 57.373 30.769 0.00 0.00 0.00 2.71
424 428 8.182881 CCTCTTTGCTCTCTAATTTCTTGATTG 58.817 37.037 0.00 0.00 0.00 2.67
425 429 8.105829 TCCTCTTTGCTCTCTAATTTCTTGATT 58.894 33.333 0.00 0.00 0.00 2.57
426 430 7.628234 TCCTCTTTGCTCTCTAATTTCTTGAT 58.372 34.615 0.00 0.00 0.00 2.57
427 431 7.009179 TCCTCTTTGCTCTCTAATTTCTTGA 57.991 36.000 0.00 0.00 0.00 3.02
428 432 7.102346 TCTCCTCTTTGCTCTCTAATTTCTTG 58.898 38.462 0.00 0.00 0.00 3.02
429 433 7.251321 TCTCCTCTTTGCTCTCTAATTTCTT 57.749 36.000 0.00 0.00 0.00 2.52
430 434 6.865834 TCTCCTCTTTGCTCTCTAATTTCT 57.134 37.500 0.00 0.00 0.00 2.52
431 435 6.482973 CCATCTCCTCTTTGCTCTCTAATTTC 59.517 42.308 0.00 0.00 0.00 2.17
432 436 6.157645 TCCATCTCCTCTTTGCTCTCTAATTT 59.842 38.462 0.00 0.00 0.00 1.82
433 437 5.664908 TCCATCTCCTCTTTGCTCTCTAATT 59.335 40.000 0.00 0.00 0.00 1.40
434 438 5.215069 TCCATCTCCTCTTTGCTCTCTAAT 58.785 41.667 0.00 0.00 0.00 1.73
435 439 4.614475 TCCATCTCCTCTTTGCTCTCTAA 58.386 43.478 0.00 0.00 0.00 2.10
436 440 4.256983 TCCATCTCCTCTTTGCTCTCTA 57.743 45.455 0.00 0.00 0.00 2.43
437 441 3.113191 TCCATCTCCTCTTTGCTCTCT 57.887 47.619 0.00 0.00 0.00 3.10
438 442 3.731089 CATCCATCTCCTCTTTGCTCTC 58.269 50.000 0.00 0.00 0.00 3.20
439 443 2.158784 GCATCCATCTCCTCTTTGCTCT 60.159 50.000 0.00 0.00 0.00 4.09
440 444 2.220313 GCATCCATCTCCTCTTTGCTC 58.780 52.381 0.00 0.00 0.00 4.26
441 445 1.562942 TGCATCCATCTCCTCTTTGCT 59.437 47.619 0.00 0.00 0.00 3.91
442 446 1.674962 GTGCATCCATCTCCTCTTTGC 59.325 52.381 0.00 0.00 0.00 3.68
443 447 2.681848 GTGTGCATCCATCTCCTCTTTG 59.318 50.000 0.00 0.00 0.00 2.77
444 448 2.306805 TGTGTGCATCCATCTCCTCTTT 59.693 45.455 0.00 0.00 0.00 2.52
445 449 1.911357 TGTGTGCATCCATCTCCTCTT 59.089 47.619 0.00 0.00 0.00 2.85
446 450 1.576577 TGTGTGCATCCATCTCCTCT 58.423 50.000 0.00 0.00 0.00 3.69
447 451 2.408271 TTGTGTGCATCCATCTCCTC 57.592 50.000 0.00 0.00 0.00 3.71
448 452 2.885135 TTTGTGTGCATCCATCTCCT 57.115 45.000 0.00 0.00 0.00 3.69
449 453 4.202050 GGTATTTTGTGTGCATCCATCTCC 60.202 45.833 0.00 0.00 0.00 3.71
450 454 4.398988 TGGTATTTTGTGTGCATCCATCTC 59.601 41.667 0.00 0.00 0.00 2.75
451 455 4.343231 TGGTATTTTGTGTGCATCCATCT 58.657 39.130 0.00 0.00 0.00 2.90
452 456 4.717233 TGGTATTTTGTGTGCATCCATC 57.283 40.909 0.00 0.00 0.00 3.51
453 457 4.322650 GGTTGGTATTTTGTGTGCATCCAT 60.323 41.667 0.00 0.00 0.00 3.41
454 458 3.006323 GGTTGGTATTTTGTGTGCATCCA 59.994 43.478 0.00 0.00 0.00 3.41
455 459 3.006323 TGGTTGGTATTTTGTGTGCATCC 59.994 43.478 0.00 0.00 0.00 3.51
456 460 4.250116 TGGTTGGTATTTTGTGTGCATC 57.750 40.909 0.00 0.00 0.00 3.91
457 461 4.040217 ACATGGTTGGTATTTTGTGTGCAT 59.960 37.500 0.00 0.00 0.00 3.96
458 462 3.386078 ACATGGTTGGTATTTTGTGTGCA 59.614 39.130 0.00 0.00 0.00 4.57
459 463 3.988819 ACATGGTTGGTATTTTGTGTGC 58.011 40.909 0.00 0.00 0.00 4.57
460 464 5.595885 TCAACATGGTTGGTATTTTGTGTG 58.404 37.500 9.03 0.00 0.00 3.82
461 465 5.860941 TCAACATGGTTGGTATTTTGTGT 57.139 34.783 9.03 0.00 0.00 3.72
462 466 6.453943 TCATCAACATGGTTGGTATTTTGTG 58.546 36.000 9.03 0.00 0.00 3.33
463 467 6.295236 CCTCATCAACATGGTTGGTATTTTGT 60.295 38.462 9.03 0.00 0.00 2.83
464 468 6.101332 CCTCATCAACATGGTTGGTATTTTG 58.899 40.000 9.03 0.00 0.00 2.44
465 469 5.337491 GCCTCATCAACATGGTTGGTATTTT 60.337 40.000 9.03 0.00 0.00 1.82
466 470 4.160252 GCCTCATCAACATGGTTGGTATTT 59.840 41.667 9.03 0.00 0.00 1.40
467 471 3.701040 GCCTCATCAACATGGTTGGTATT 59.299 43.478 9.03 0.00 0.00 1.89
468 472 3.290710 GCCTCATCAACATGGTTGGTAT 58.709 45.455 9.03 0.00 0.00 2.73
469 473 2.620367 GGCCTCATCAACATGGTTGGTA 60.620 50.000 9.03 0.00 0.00 3.25
470 474 1.549203 GCCTCATCAACATGGTTGGT 58.451 50.000 9.03 0.00 0.00 3.67
471 475 0.819582 GGCCTCATCAACATGGTTGG 59.180 55.000 9.03 0.00 0.00 3.77
472 476 1.747355 GAGGCCTCATCAACATGGTTG 59.253 52.381 28.43 2.77 0.00 3.77
473 477 1.355381 TGAGGCCTCATCAACATGGTT 59.645 47.619 32.00 0.00 34.14 3.67
474 478 0.994247 TGAGGCCTCATCAACATGGT 59.006 50.000 32.00 0.00 34.14 3.55
475 479 1.211212 TCTGAGGCCTCATCAACATGG 59.789 52.381 35.11 20.53 39.13 3.66
476 480 2.704464 TCTGAGGCCTCATCAACATG 57.296 50.000 35.11 21.26 39.13 3.21
477 481 2.775960 TCATCTGAGGCCTCATCAACAT 59.224 45.455 35.11 18.32 39.13 2.71
478 482 2.190538 TCATCTGAGGCCTCATCAACA 58.809 47.619 35.11 16.93 39.13 3.33
479 483 2.996249 TCATCTGAGGCCTCATCAAC 57.004 50.000 35.11 8.04 39.13 3.18
480 484 3.043418 TCATCATCTGAGGCCTCATCAA 58.957 45.455 35.11 23.03 39.13 2.57
481 485 2.686119 TCATCATCTGAGGCCTCATCA 58.314 47.619 35.11 24.39 39.13 3.07
482 486 3.261137 TCATCATCATCTGAGGCCTCATC 59.739 47.826 35.11 10.01 39.13 2.92
483 487 3.248888 TCATCATCATCTGAGGCCTCAT 58.751 45.455 35.11 19.67 39.13 2.90
484 488 2.633481 CTCATCATCATCTGAGGCCTCA 59.367 50.000 33.04 33.04 37.28 3.86
485 489 2.613474 GCTCATCATCATCTGAGGCCTC 60.613 54.545 26.78 26.78 39.42 4.70
486 490 1.348366 GCTCATCATCATCTGAGGCCT 59.652 52.381 3.86 3.86 39.42 5.19
487 491 1.348366 AGCTCATCATCATCTGAGGCC 59.652 52.381 0.00 0.00 39.42 5.19
488 492 2.418692 CAGCTCATCATCATCTGAGGC 58.581 52.381 2.13 0.00 39.42 4.70
489 493 2.224305 TGCAGCTCATCATCATCTGAGG 60.224 50.000 0.00 0.00 39.42 3.86
490 494 3.113260 TGCAGCTCATCATCATCTGAG 57.887 47.619 0.00 0.00 41.47 3.35
491 495 3.771577 ATGCAGCTCATCATCATCTGA 57.228 42.857 0.00 0.00 38.53 3.27
501 505 1.747145 CGAGGAGGATGCAGCTCAT 59.253 57.895 0.22 0.00 38.32 2.90
502 506 2.429767 CCGAGGAGGATGCAGCTCA 61.430 63.158 0.22 0.00 45.00 4.26
503 507 2.420890 CCGAGGAGGATGCAGCTC 59.579 66.667 0.22 0.00 45.00 4.09
504 508 3.859414 GCCGAGGAGGATGCAGCT 61.859 66.667 0.22 0.00 45.00 4.24
505 509 4.925861 GGCCGAGGAGGATGCAGC 62.926 72.222 0.00 0.00 45.00 5.25
506 510 2.815945 ATGGCCGAGGAGGATGCAG 61.816 63.158 0.00 0.00 45.00 4.41
507 511 2.769621 ATGGCCGAGGAGGATGCA 60.770 61.111 0.00 0.00 45.00 3.96
508 512 2.281345 CATGGCCGAGGAGGATGC 60.281 66.667 0.00 0.00 45.00 3.91
509 513 2.429058 CCATGGCCGAGGAGGATG 59.571 66.667 7.49 0.00 45.00 3.51
510 514 3.564218 GCCATGGCCGAGGAGGAT 61.564 66.667 27.24 0.00 45.00 3.24
516 520 4.845580 AGAAGCGCCATGGCCGAG 62.846 66.667 30.79 18.02 37.98 4.63
517 521 4.838152 GAGAAGCGCCATGGCCGA 62.838 66.667 30.79 0.00 37.98 5.54
538 542 2.787249 CGTATGGTGTGCAGCAGC 59.213 61.111 9.90 10.34 42.52 5.25
539 543 2.753966 GGCGTATGGTGTGCAGCAG 61.754 63.158 9.90 0.00 42.52 4.24
540 544 2.745884 GGCGTATGGTGTGCAGCA 60.746 61.111 6.53 6.53 43.48 4.41
541 545 2.114670 ATGGCGTATGGTGTGCAGC 61.115 57.895 0.00 0.00 0.00 5.25
542 546 1.723273 CATGGCGTATGGTGTGCAG 59.277 57.895 0.00 0.00 32.95 4.41
543 547 3.902318 CATGGCGTATGGTGTGCA 58.098 55.556 0.00 0.00 32.95 4.57
550 554 1.066002 CTTTGCTTCCCATGGCGTATG 59.934 52.381 6.09 0.00 36.50 2.39
551 555 1.392589 CTTTGCTTCCCATGGCGTAT 58.607 50.000 6.09 0.00 0.00 3.06
552 556 0.679640 CCTTTGCTTCCCATGGCGTA 60.680 55.000 6.09 0.00 0.00 4.42
553 557 1.978617 CCTTTGCTTCCCATGGCGT 60.979 57.895 6.09 0.00 0.00 5.68
554 558 1.978617 ACCTTTGCTTCCCATGGCG 60.979 57.895 6.09 0.00 0.00 5.69
555 559 0.899717 TCACCTTTGCTTCCCATGGC 60.900 55.000 6.09 0.00 0.00 4.40
556 560 1.180029 CTCACCTTTGCTTCCCATGG 58.820 55.000 4.14 4.14 0.00 3.66
557 561 1.180029 CCTCACCTTTGCTTCCCATG 58.820 55.000 0.00 0.00 0.00 3.66
558 562 1.005215 CTCCTCACCTTTGCTTCCCAT 59.995 52.381 0.00 0.00 0.00 4.00
559 563 0.401738 CTCCTCACCTTTGCTTCCCA 59.598 55.000 0.00 0.00 0.00 4.37
560 564 0.322906 CCTCCTCACCTTTGCTTCCC 60.323 60.000 0.00 0.00 0.00 3.97
561 565 0.693049 TCCTCCTCACCTTTGCTTCC 59.307 55.000 0.00 0.00 0.00 3.46
562 566 1.339535 CCTCCTCCTCACCTTTGCTTC 60.340 57.143 0.00 0.00 0.00 3.86
563 567 0.695347 CCTCCTCCTCACCTTTGCTT 59.305 55.000 0.00 0.00 0.00 3.91
564 568 0.178891 TCCTCCTCCTCACCTTTGCT 60.179 55.000 0.00 0.00 0.00 3.91
565 569 0.035915 GTCCTCCTCCTCACCTTTGC 60.036 60.000 0.00 0.00 0.00 3.68
566 570 0.247736 CGTCCTCCTCCTCACCTTTG 59.752 60.000 0.00 0.00 0.00 2.77
567 571 0.114560 TCGTCCTCCTCCTCACCTTT 59.885 55.000 0.00 0.00 0.00 3.11
568 572 0.323908 CTCGTCCTCCTCCTCACCTT 60.324 60.000 0.00 0.00 0.00 3.50
569 573 1.304952 CTCGTCCTCCTCCTCACCT 59.695 63.158 0.00 0.00 0.00 4.00
570 574 1.755008 CCTCGTCCTCCTCCTCACC 60.755 68.421 0.00 0.00 0.00 4.02
571 575 1.755008 CCCTCGTCCTCCTCCTCAC 60.755 68.421 0.00 0.00 0.00 3.51
572 576 2.684104 CCCTCGTCCTCCTCCTCA 59.316 66.667 0.00 0.00 0.00 3.86
573 577 2.835895 GCCCTCGTCCTCCTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
574 578 4.824515 CGCCCTCGTCCTCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
575 579 4.816984 TCGCCCTCGTCCTCCTCC 62.817 72.222 0.00 0.00 36.96 4.30
576 580 3.213402 CTCGCCCTCGTCCTCCTC 61.213 72.222 0.00 0.00 36.96 3.71
577 581 3.707640 CTCTCGCCCTCGTCCTCCT 62.708 68.421 0.00 0.00 36.96 3.69
578 582 3.213402 CTCTCGCCCTCGTCCTCC 61.213 72.222 0.00 0.00 36.96 4.30
579 583 2.438795 ACTCTCGCCCTCGTCCTC 60.439 66.667 0.00 0.00 36.96 3.71
580 584 2.752238 CACTCTCGCCCTCGTCCT 60.752 66.667 0.00 0.00 36.96 3.85
581 585 4.500116 GCACTCTCGCCCTCGTCC 62.500 72.222 0.00 0.00 36.96 4.79
589 593 0.107945 ATGAGGAAAGGCACTCTCGC 60.108 55.000 0.00 0.00 38.49 5.03
590 594 1.480137 AGATGAGGAAAGGCACTCTCG 59.520 52.381 0.00 0.00 38.49 4.04
591 595 3.269178 CAAGATGAGGAAAGGCACTCTC 58.731 50.000 0.00 0.00 38.49 3.20
592 596 2.026449 CCAAGATGAGGAAAGGCACTCT 60.026 50.000 0.00 0.00 38.49 3.24
593 597 2.363683 CCAAGATGAGGAAAGGCACTC 58.636 52.381 0.00 0.00 38.49 3.51
595 599 1.467920 CCCAAGATGAGGAAAGGCAC 58.532 55.000 0.00 0.00 0.00 5.01
596 600 0.332632 CCCCAAGATGAGGAAAGGCA 59.667 55.000 0.00 0.00 0.00 4.75
597 601 0.625849 TCCCCAAGATGAGGAAAGGC 59.374 55.000 0.00 0.00 0.00 4.35
598 602 3.053395 TCAATCCCCAAGATGAGGAAAGG 60.053 47.826 0.00 0.00 34.56 3.11
599 603 4.205587 CTCAATCCCCAAGATGAGGAAAG 58.794 47.826 0.00 0.00 34.56 2.62
600 604 3.593328 ACTCAATCCCCAAGATGAGGAAA 59.407 43.478 6.58 0.00 35.83 3.13
601 605 3.192944 ACTCAATCCCCAAGATGAGGAA 58.807 45.455 6.58 0.00 35.83 3.36
602 606 2.850833 ACTCAATCCCCAAGATGAGGA 58.149 47.619 6.58 0.00 35.83 3.71
603 607 4.778213 TTACTCAATCCCCAAGATGAGG 57.222 45.455 6.58 0.00 35.83 3.86
604 608 6.429385 GCTATTTACTCAATCCCCAAGATGAG 59.571 42.308 0.00 0.00 36.75 2.90
605 609 6.126507 TGCTATTTACTCAATCCCCAAGATGA 60.127 38.462 0.00 0.00 34.56 2.92
606 610 6.064060 TGCTATTTACTCAATCCCCAAGATG 58.936 40.000 0.00 0.00 34.56 2.90
607 611 6.266131 TGCTATTTACTCAATCCCCAAGAT 57.734 37.500 0.00 0.00 36.48 2.40
608 612 5.708736 TGCTATTTACTCAATCCCCAAGA 57.291 39.130 0.00 0.00 0.00 3.02
609 613 6.773976 TTTGCTATTTACTCAATCCCCAAG 57.226 37.500 0.00 0.00 0.00 3.61
610 614 7.546250 TTTTTGCTATTTACTCAATCCCCAA 57.454 32.000 0.00 0.00 0.00 4.12
738 744 6.139638 CAGAAAACGGTTTTAAACGCTAGAAC 59.860 38.462 18.06 2.61 31.94 3.01
740 746 5.523188 TCAGAAAACGGTTTTAAACGCTAGA 59.477 36.000 18.06 8.62 31.94 2.43
929 966 4.085733 CAAAGAGGAGAGGAGAGTGAGAA 58.914 47.826 0.00 0.00 0.00 2.87
949 997 3.353836 GCCGGCGTCAAAGAGCAA 61.354 61.111 12.58 0.00 34.54 3.91
1114 1186 5.643176 ACCCTAACCTAATCTAGCTCCTAC 58.357 45.833 0.00 0.00 0.00 3.18
1166 1238 8.788325 AAACCTGCCTACTAAATAACAGTAAG 57.212 34.615 0.00 0.00 0.00 2.34
1239 1311 0.323451 CCAGCAAGAACCCTAACCCC 60.323 60.000 0.00 0.00 0.00 4.95
1308 1385 3.493002 CCTGCACAAACACATCACCAAAT 60.493 43.478 0.00 0.00 0.00 2.32
1313 1390 2.031682 GTCTCCTGCACAAACACATCAC 60.032 50.000 0.00 0.00 0.00 3.06
1359 1436 1.379642 GCTCCAGCTGGCCACATAAC 61.380 60.000 28.91 0.71 38.21 1.89
1448 1525 3.886505 ACAACCATAGAAACGCTTTCCAA 59.113 39.130 6.79 0.00 40.54 3.53
1454 1531 2.038557 ACTGGACAACCATAGAAACGCT 59.961 45.455 0.00 0.00 45.87 5.07
1555 2358 8.458573 TGTCAACATAATATTGTATGGGTTCC 57.541 34.615 0.00 0.00 36.04 3.62
1563 2366 9.448438 AGAGCAACTTGTCAACATAATATTGTA 57.552 29.630 0.00 0.00 0.00 2.41
1677 2498 9.851686 ATTCACAGAAATATGCTTCCTATACAA 57.148 29.630 0.00 0.00 0.00 2.41
1694 2515 6.052360 TGCTTGTACAAGTACATTCACAGAA 58.948 36.000 30.90 0.00 44.54 3.02
1719 2540 5.876357 TCAAGTTATAGCTGAAACCCAACT 58.124 37.500 0.00 0.00 0.00 3.16
1771 2592 3.701664 AGAAATTGAAGGTGGGGCTTAG 58.298 45.455 0.00 0.00 0.00 2.18
1778 2599 8.834465 CATATCAGACTAAGAAATTGAAGGTGG 58.166 37.037 0.00 0.00 0.00 4.61
1787 2608 9.236006 ACAACAAAGCATATCAGACTAAGAAAT 57.764 29.630 0.00 0.00 0.00 2.17
1805 2626 7.436080 AGTGCACTCAATTTCATAACAACAAAG 59.564 33.333 15.25 0.00 0.00 2.77
2098 3035 1.825105 ATCCATGTGGTCTGCCCTAT 58.175 50.000 0.00 0.00 36.34 2.57
2104 3041 3.912496 TCTGGTAATCCATGTGGTCTG 57.088 47.619 0.00 0.00 43.43 3.51
2155 3092 5.623596 GCACTCTCTTCTACCTCTTTCTTCC 60.624 48.000 0.00 0.00 0.00 3.46
2264 3285 1.180029 CCTTCATTGCCTTCCTGGTG 58.820 55.000 0.00 0.00 38.35 4.17
2294 3447 8.995027 TCTCTATCTTAAGCAAATCTCTCTCT 57.005 34.615 0.00 0.00 0.00 3.10
2429 4479 2.436417 GCCTTGGATGTACTTCAGCAA 58.564 47.619 10.60 5.88 33.66 3.91
2432 4482 3.356529 AAGGCCTTGGATGTACTTCAG 57.643 47.619 19.73 1.03 0.00 3.02
2797 4893 2.187163 GGCGGCTGGGTTCTAGAC 59.813 66.667 0.00 0.00 0.00 2.59
2798 4894 2.284331 TGGCGGCTGGGTTCTAGA 60.284 61.111 11.43 0.00 0.00 2.43
2799 4895 2.125106 GTGGCGGCTGGGTTCTAG 60.125 66.667 11.43 0.00 0.00 2.43
2800 4896 2.925706 TGTGGCGGCTGGGTTCTA 60.926 61.111 11.43 0.00 0.00 2.10
2888 4985 1.222936 CTCCTCACATCCACTGCCC 59.777 63.158 0.00 0.00 0.00 5.36
2942 5039 1.463214 TCCCACTCCAGCTCCCAAA 60.463 57.895 0.00 0.00 0.00 3.28
3024 5121 2.742372 CCGCCAGGGACAAGAACG 60.742 66.667 0.00 0.00 38.47 3.95
3090 5187 0.251653 AAGGGTGAGGAGCGAGTACA 60.252 55.000 0.00 0.00 0.00 2.90
3135 5232 4.978186 ACTCTCAATCGTAACGATCGAAA 58.022 39.130 24.34 6.05 46.30 3.46
3296 5407 3.260884 TCTGGGTAGATTCAGACAACACC 59.739 47.826 0.00 0.00 35.37 4.16
3388 5557 2.624838 CCTGAAACCTGACTGTTTGCAT 59.375 45.455 0.00 0.00 38.51 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.