Multiple sequence alignment - TraesCS1D01G056800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G056800 chr1D 100.000 3811 0 0 1 3811 37461529 37457719 0.000000e+00 7038
1 TraesCS1D01G056800 chr1D 91.623 382 22 2 1 381 27961174 27961546 1.570000e-143 520
2 TraesCS1D01G056800 chr1D 91.169 385 22 5 1 383 67982172 67981798 2.630000e-141 512
3 TraesCS1D01G056800 chr1D 88.832 394 32 4 1 393 308477587 308477205 1.240000e-129 473
4 TraesCS1D01G056800 chr1D 98.305 236 4 0 3576 3811 37452188 37451953 7.620000e-112 414
5 TraesCS1D01G056800 chr1D 93.333 240 11 5 3574 3811 33961575 33961811 2.180000e-92 350
6 TraesCS1D01G056800 chr1B 90.488 2870 177 50 378 3206 57381748 57378934 0.000000e+00 3699
7 TraesCS1D01G056800 chr1B 87.143 280 22 6 3298 3575 57378937 57378670 4.780000e-79 305
8 TraesCS1D01G056800 chr1A 93.355 1851 93 11 1379 3206 36763281 36761438 0.000000e+00 2710
9 TraesCS1D01G056800 chr1A 90.476 819 49 11 520 1326 36764109 36763308 0.000000e+00 1053
10 TraesCS1D01G056800 chr1A 91.756 279 20 2 3298 3575 36761441 36761165 5.970000e-103 385
11 TraesCS1D01G056800 chr1A 86.986 146 12 5 378 522 36764287 36764148 1.420000e-34 158
12 TraesCS1D01G056800 chr1A 88.281 128 9 6 3206 3333 474641770 474641649 8.530000e-32 148
13 TraesCS1D01G056800 chr7D 85.881 1197 118 25 1155 2311 437424082 437425267 0.000000e+00 1227
14 TraesCS1D01G056800 chr7D 90.073 413 37 2 2385 2794 437425292 437425703 2.020000e-147 532
15 TraesCS1D01G056800 chr7D 85.117 383 40 9 1 379 469547525 469547156 3.590000e-100 375
16 TraesCS1D01G056800 chr7D 91.525 118 7 2 3186 3300 474338702 474338819 3.940000e-35 159
17 TraesCS1D01G056800 chr7A 85.835 1186 121 24 1155 2311 487631189 487632356 0.000000e+00 1216
18 TraesCS1D01G056800 chr7A 83.204 387 52 9 1 385 110102079 110102454 3.650000e-90 342
19 TraesCS1D01G056800 chr7B 85.812 1170 127 14 1156 2311 454239227 454240371 0.000000e+00 1205
20 TraesCS1D01G056800 chr7B 91.951 410 33 0 2385 2794 454240396 454240805 3.300000e-160 575
21 TraesCS1D01G056800 chr7B 95.283 106 4 1 3194 3299 562993170 562993066 2.350000e-37 167
22 TraesCS1D01G056800 chr7B 95.238 105 4 1 3202 3306 589348318 589348421 8.470000e-37 165
23 TraesCS1D01G056800 chr2D 91.473 387 19 5 1 383 615402723 615402347 1.570000e-143 520
24 TraesCS1D01G056800 chr6D 91.192 386 24 2 1 385 149438467 149438843 2.030000e-142 516
25 TraesCS1D01G056800 chr6D 93.927 247 14 1 3566 3811 395366741 395366987 4.650000e-99 372
26 TraesCS1D01G056800 chr6D 96.117 103 4 0 3197 3299 251235135 251235033 6.550000e-38 169
27 TraesCS1D01G056800 chr5D 90.464 388 25 8 1 386 426472508 426472885 5.680000e-138 501
28 TraesCS1D01G056800 chr5D 88.312 385 32 9 1 383 458735399 458735026 2.090000e-122 449
29 TraesCS1D01G056800 chr5D 95.238 105 4 1 3196 3299 521371685 521371581 8.470000e-37 165
30 TraesCS1D01G056800 chr6A 90.501 379 25 6 2 379 565583555 565583187 1.230000e-134 490
31 TraesCS1D01G056800 chr2B 88.918 388 31 4 1 386 693855826 693855449 5.760000e-128 468
32 TraesCS1D01G056800 chr2B 87.565 386 37 7 1 385 1676506 1676881 1.630000e-118 436
33 TraesCS1D01G056800 chr2B 92.887 239 17 0 3573 3811 765052342 765052580 7.840000e-92 348
34 TraesCS1D01G056800 chr2B 89.286 280 20 7 3298 3575 15261476 15261747 3.650000e-90 342
35 TraesCS1D01G056800 chr2B 93.750 192 12 0 3015 3206 15261288 15261479 4.820000e-74 289
36 TraesCS1D01G056800 chr3B 88.571 385 32 8 1 383 699501214 699501588 1.250000e-124 457
37 TraesCS1D01G056800 chr3B 88.235 391 31 8 1 388 179130748 179131126 1.610000e-123 453
38 TraesCS1D01G056800 chr3B 91.525 118 8 1 3184 3299 423806084 423806201 1.100000e-35 161
39 TraesCS1D01G056800 chr4D 88.542 384 28 10 1 383 403575118 403575486 5.810000e-123 451
40 TraesCS1D01G056800 chr4D 86.563 387 35 10 1 383 360461707 360461334 9.850000e-111 411
41 TraesCS1D01G056800 chr5A 84.872 390 42 13 1 386 3379690 3379314 9.990000e-101 377
42 TraesCS1D01G056800 chr3A 85.013 387 37 15 1 383 479140687 479140318 1.290000e-99 374
43 TraesCS1D01G056800 chr2A 94.093 237 14 0 3575 3811 66094966 66094730 1.010000e-95 361
44 TraesCS1D01G056800 chr2A 94.068 236 14 0 3576 3811 66089573 66089338 3.620000e-95 359
45 TraesCS1D01G056800 chr2A 95.238 105 5 0 3195 3299 101846919 101847023 2.350000e-37 167
46 TraesCS1D01G056800 chr2A 96.970 99 3 0 3202 3300 587158358 587158260 2.350000e-37 167
47 TraesCS1D01G056800 chr4A 94.068 236 13 1 3576 3811 474733715 474733949 1.300000e-94 357
48 TraesCS1D01G056800 chr4A 93.333 240 14 2 3572 3810 474728533 474728771 1.680000e-93 353
49 TraesCS1D01G056800 chr6B 93.644 236 15 0 3576 3811 391123407 391123642 1.680000e-93 353
50 TraesCS1D01G056800 chr4B 88.571 280 21 8 3298 3575 196401589 196401859 2.840000e-86 329
51 TraesCS1D01G056800 chr4B 91.146 192 17 0 3015 3206 196401401 196401592 1.050000e-65 261


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G056800 chr1D 37457719 37461529 3810 True 7038.0 7038 100.00000 1 3811 1 chr1D.!!$R2 3810
1 TraesCS1D01G056800 chr1B 57378670 57381748 3078 True 2002.0 3699 88.81550 378 3575 2 chr1B.!!$R1 3197
2 TraesCS1D01G056800 chr1A 36761165 36764287 3122 True 1076.5 2710 90.64325 378 3575 4 chr1A.!!$R2 3197
3 TraesCS1D01G056800 chr7D 437424082 437425703 1621 False 879.5 1227 87.97700 1155 2794 2 chr7D.!!$F2 1639
4 TraesCS1D01G056800 chr7A 487631189 487632356 1167 False 1216.0 1216 85.83500 1155 2311 1 chr7A.!!$F2 1156
5 TraesCS1D01G056800 chr7B 454239227 454240805 1578 False 890.0 1205 88.88150 1156 2794 2 chr7B.!!$F2 1638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.028902 GACCTGGACACAAAACGCAC 59.971 55.000 0.00 0.00 0.00 5.34 F
285 286 0.099791 AAACGCACAAAACGGACCAG 59.900 50.000 0.00 0.00 34.00 4.00 F
425 426 0.107703 TAAATCAGTGGCGAGCCCTG 60.108 55.000 19.67 19.67 36.43 4.45 F
466 467 0.539051 GACTGCAGTGCCTGTCCTAT 59.461 55.000 27.27 0.00 33.43 2.57 F
473 474 0.618458 GTGCCTGTCCTATCAACCCA 59.382 55.000 0.00 0.00 0.00 4.51 F
1842 1940 1.065199 GGGTGAGACATCTTGATGCCA 60.065 52.381 10.20 4.24 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1102 1154 0.450184 CACGGGCGTAATTTGAAGGG 59.550 55.000 0.00 0.0 0.00 3.95 R
1560 1639 1.017387 GCTGAATTTAGGAGGCACCG 58.983 55.000 0.00 0.0 44.74 4.94 R
1813 1910 1.272490 GATGTCTCACCCGAGTTGACA 59.728 52.381 5.40 5.4 39.62 3.58 R
1914 2020 1.895798 TCTGTGTAGTCCTGCTCTTGG 59.104 52.381 0.00 0.0 0.00 3.61 R
2048 2158 2.427232 TTTGTTTGAGCTGCAGATGC 57.573 45.000 20.43 2.3 42.50 3.91 R
3740 3882 0.034767 GCGGCTAGGGTTTAGGGTTT 60.035 55.000 0.00 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.387947 TCGGGTTTCGAGGAGGCC 61.388 66.667 0.00 0.00 43.74 5.19
19 20 4.814294 CGGGTTTCGAGGAGGCCG 62.814 72.222 0.00 0.00 42.43 6.13
37 38 4.181010 CGGGATGGAGTGGGGCAG 62.181 72.222 0.00 0.00 0.00 4.85
38 39 3.017581 GGGATGGAGTGGGGCAGT 61.018 66.667 0.00 0.00 0.00 4.40
39 40 2.273449 GGATGGAGTGGGGCAGTG 59.727 66.667 0.00 0.00 0.00 3.66
40 41 2.606587 GGATGGAGTGGGGCAGTGT 61.607 63.158 0.00 0.00 0.00 3.55
41 42 1.377725 GATGGAGTGGGGCAGTGTG 60.378 63.158 0.00 0.00 0.00 3.82
42 43 2.826777 GATGGAGTGGGGCAGTGTGG 62.827 65.000 0.00 0.00 0.00 4.17
43 44 3.249189 GGAGTGGGGCAGTGTGGA 61.249 66.667 0.00 0.00 0.00 4.02
44 45 2.032681 GAGTGGGGCAGTGTGGAC 59.967 66.667 0.00 0.00 0.00 4.02
45 46 3.883744 GAGTGGGGCAGTGTGGACG 62.884 68.421 0.00 0.00 0.00 4.79
46 47 3.936203 GTGGGGCAGTGTGGACGA 61.936 66.667 0.00 0.00 0.00 4.20
47 48 3.936203 TGGGGCAGTGTGGACGAC 61.936 66.667 0.00 0.00 0.00 4.34
49 50 3.986006 GGGCAGTGTGGACGACGA 61.986 66.667 0.00 0.00 0.00 4.20
50 51 2.733593 GGCAGTGTGGACGACGAC 60.734 66.667 0.00 0.00 0.00 4.34
51 52 2.733593 GCAGTGTGGACGACGACC 60.734 66.667 9.52 9.52 0.00 4.79
52 53 2.428569 CAGTGTGGACGACGACCG 60.429 66.667 11.62 0.00 45.44 4.79
53 54 3.667282 AGTGTGGACGACGACCGG 61.667 66.667 11.62 0.00 43.93 5.28
54 55 3.969802 GTGTGGACGACGACCGGT 61.970 66.667 6.92 6.92 43.93 5.28
55 56 3.663176 TGTGGACGACGACCGGTC 61.663 66.667 25.28 25.28 43.93 4.79
56 57 4.410743 GTGGACGACGACCGGTCC 62.411 72.222 28.52 14.82 42.99 4.46
57 58 4.953010 TGGACGACGACCGGTCCA 62.953 66.667 28.52 17.44 42.99 4.02
58 59 4.410743 GGACGACGACCGGTCCAC 62.411 72.222 28.52 20.14 42.99 4.02
59 60 4.748679 GACGACGACCGGTCCACG 62.749 72.222 31.91 31.91 42.99 4.94
69 70 3.335729 GGTCCACGGGTTCCCCAT 61.336 66.667 1.93 0.00 45.83 4.00
70 71 2.761160 GTCCACGGGTTCCCCATT 59.239 61.111 1.93 0.00 45.83 3.16
71 72 1.076014 GTCCACGGGTTCCCCATTT 59.924 57.895 1.93 0.00 45.83 2.32
72 73 0.328926 GTCCACGGGTTCCCCATTTA 59.671 55.000 1.93 0.00 45.83 1.40
73 74 1.073931 TCCACGGGTTCCCCATTTAA 58.926 50.000 1.93 0.00 45.83 1.52
74 75 1.004979 TCCACGGGTTCCCCATTTAAG 59.995 52.381 1.93 0.00 45.83 1.85
75 76 1.004979 CCACGGGTTCCCCATTTAAGA 59.995 52.381 1.93 0.00 45.83 2.10
76 77 2.555670 CCACGGGTTCCCCATTTAAGAA 60.556 50.000 1.93 0.00 45.83 2.52
77 78 2.752903 CACGGGTTCCCCATTTAAGAAG 59.247 50.000 1.93 0.00 45.83 2.85
78 79 2.291346 ACGGGTTCCCCATTTAAGAAGG 60.291 50.000 1.93 0.00 45.83 3.46
79 80 2.025699 CGGGTTCCCCATTTAAGAAGGA 60.026 50.000 1.93 0.00 45.83 3.36
80 81 3.362706 GGGTTCCCCATTTAAGAAGGAC 58.637 50.000 0.00 0.00 44.65 3.85
81 82 3.014623 GGTTCCCCATTTAAGAAGGACG 58.985 50.000 0.00 0.00 0.00 4.79
82 83 3.014623 GTTCCCCATTTAAGAAGGACGG 58.985 50.000 0.00 0.00 0.00 4.79
83 84 2.271777 TCCCCATTTAAGAAGGACGGT 58.728 47.619 0.00 0.00 0.00 4.83
84 85 2.026636 TCCCCATTTAAGAAGGACGGTG 60.027 50.000 0.00 0.00 0.00 4.94
85 86 2.026636 CCCCATTTAAGAAGGACGGTGA 60.027 50.000 0.00 0.00 0.00 4.02
86 87 3.007635 CCCATTTAAGAAGGACGGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
87 88 3.007635 CCATTTAAGAAGGACGGTGACC 58.992 50.000 0.00 0.00 0.00 4.02
88 89 3.307480 CCATTTAAGAAGGACGGTGACCT 60.307 47.826 0.00 0.00 39.69 3.85
92 93 4.306245 AAGGACGGTGACCTTCCA 57.694 55.556 26.58 0.00 43.46 3.53
93 94 1.752833 AAGGACGGTGACCTTCCAC 59.247 57.895 26.58 3.27 43.46 4.02
94 95 0.763223 AAGGACGGTGACCTTCCACT 60.763 55.000 26.58 12.16 43.46 4.00
95 96 1.004918 GGACGGTGACCTTCCACTG 60.005 63.158 21.08 4.20 46.17 3.66
96 97 1.004918 GACGGTGACCTTCCACTGG 60.005 63.158 0.00 0.00 45.29 4.00
97 98 2.347490 CGGTGACCTTCCACTGGG 59.653 66.667 0.00 0.00 39.21 4.45
98 99 2.034221 GGTGACCTTCCACTGGGC 59.966 66.667 0.00 0.00 37.24 5.36
99 100 2.034221 GTGACCTTCCACTGGGCC 59.966 66.667 0.00 0.00 34.38 5.80
100 101 3.636231 TGACCTTCCACTGGGCCG 61.636 66.667 0.00 0.00 0.00 6.13
101 102 3.319198 GACCTTCCACTGGGCCGA 61.319 66.667 0.00 0.00 0.00 5.54
102 103 2.610859 ACCTTCCACTGGGCCGAT 60.611 61.111 0.00 0.00 0.00 4.18
103 104 2.124570 CCTTCCACTGGGCCGATG 60.125 66.667 0.00 0.00 0.00 3.84
104 105 2.669133 CCTTCCACTGGGCCGATGA 61.669 63.158 8.34 0.00 0.00 2.92
105 106 1.450312 CTTCCACTGGGCCGATGAC 60.450 63.158 8.34 0.00 0.00 3.06
106 107 2.184020 CTTCCACTGGGCCGATGACA 62.184 60.000 8.34 0.00 0.00 3.58
107 108 2.124983 CCACTGGGCCGATGACAG 60.125 66.667 8.34 0.00 38.19 3.51
108 109 2.124983 CACTGGGCCGATGACAGG 60.125 66.667 10.26 0.00 36.57 4.00
109 110 2.607750 ACTGGGCCGATGACAGGT 60.608 61.111 10.26 0.00 36.57 4.00
110 111 2.124983 CTGGGCCGATGACAGGTG 60.125 66.667 0.00 0.00 0.00 4.00
111 112 3.687321 CTGGGCCGATGACAGGTGG 62.687 68.421 0.00 0.00 0.00 4.61
112 113 4.489771 GGGCCGATGACAGGTGGG 62.490 72.222 0.00 0.00 0.00 4.61
113 114 4.489771 GGCCGATGACAGGTGGGG 62.490 72.222 0.00 0.00 0.00 4.96
115 116 4.489771 CCGATGACAGGTGGGGCC 62.490 72.222 0.00 0.00 37.58 5.80
116 117 4.838152 CGATGACAGGTGGGGCCG 62.838 72.222 0.00 0.00 43.70 6.13
117 118 4.489771 GATGACAGGTGGGGCCGG 62.490 72.222 0.00 0.00 43.70 6.13
137 138 2.809706 GCCCATGCGCATTGATGT 59.190 55.556 22.81 0.00 0.00 3.06
138 139 1.142314 GCCCATGCGCATTGATGTT 59.858 52.632 22.81 0.00 0.00 2.71
139 140 1.149361 GCCCATGCGCATTGATGTTG 61.149 55.000 22.81 9.26 0.00 3.33
140 141 0.528901 CCCATGCGCATTGATGTTGG 60.529 55.000 22.81 18.50 0.00 3.77
141 142 1.149361 CCATGCGCATTGATGTTGGC 61.149 55.000 22.81 0.00 0.00 4.52
144 145 2.102749 CGCATTGATGTTGGCGGG 59.897 61.111 0.00 0.00 45.27 6.13
145 146 2.699768 CGCATTGATGTTGGCGGGT 61.700 57.895 0.00 0.00 45.27 5.28
146 147 1.153784 GCATTGATGTTGGCGGGTG 60.154 57.895 0.00 0.00 0.00 4.61
147 148 1.512230 CATTGATGTTGGCGGGTGG 59.488 57.895 0.00 0.00 0.00 4.61
148 149 1.682005 ATTGATGTTGGCGGGTGGG 60.682 57.895 0.00 0.00 0.00 4.61
149 150 2.148723 ATTGATGTTGGCGGGTGGGA 62.149 55.000 0.00 0.00 0.00 4.37
150 151 2.438434 GATGTTGGCGGGTGGGAG 60.438 66.667 0.00 0.00 0.00 4.30
151 152 3.995506 GATGTTGGCGGGTGGGAGG 62.996 68.421 0.00 0.00 0.00 4.30
153 154 3.324108 GTTGGCGGGTGGGAGGTA 61.324 66.667 0.00 0.00 0.00 3.08
154 155 3.006728 TTGGCGGGTGGGAGGTAG 61.007 66.667 0.00 0.00 0.00 3.18
157 158 3.782443 GCGGGTGGGAGGTAGGTG 61.782 72.222 0.00 0.00 0.00 4.00
158 159 3.081409 CGGGTGGGAGGTAGGTGG 61.081 72.222 0.00 0.00 0.00 4.61
159 160 3.408853 GGGTGGGAGGTAGGTGGC 61.409 72.222 0.00 0.00 0.00 5.01
160 161 3.408853 GGTGGGAGGTAGGTGGCC 61.409 72.222 0.00 0.00 0.00 5.36
161 162 3.782443 GTGGGAGGTAGGTGGCCG 61.782 72.222 0.00 0.00 0.00 6.13
209 210 3.764049 GCGCGTCTGTTCGGTGTC 61.764 66.667 8.43 0.00 0.00 3.67
210 211 3.103911 CGCGTCTGTTCGGTGTCC 61.104 66.667 0.00 0.00 0.00 4.02
232 233 4.973055 CGACCCAAACCCGACGCA 62.973 66.667 0.00 0.00 0.00 5.24
233 234 2.592287 GACCCAAACCCGACGCAA 60.592 61.111 0.00 0.00 0.00 4.85
247 248 4.607024 GCAAGTTTGCGCTCGAAA 57.393 50.000 9.73 0.00 45.11 3.46
248 249 3.092081 GCAAGTTTGCGCTCGAAAT 57.908 47.368 9.73 0.00 45.11 2.17
249 250 0.704551 GCAAGTTTGCGCTCGAAATG 59.295 50.000 9.73 1.98 45.11 2.32
250 251 1.330306 CAAGTTTGCGCTCGAAATGG 58.670 50.000 9.73 0.00 0.00 3.16
251 252 0.240945 AAGTTTGCGCTCGAAATGGG 59.759 50.000 9.73 0.00 0.00 4.00
252 253 0.889186 AGTTTGCGCTCGAAATGGGT 60.889 50.000 9.73 0.00 0.00 4.51
253 254 0.039527 GTTTGCGCTCGAAATGGGTT 60.040 50.000 9.73 0.00 0.00 4.11
254 255 0.039617 TTTGCGCTCGAAATGGGTTG 60.040 50.000 9.73 0.00 0.00 3.77
255 256 0.886938 TTGCGCTCGAAATGGGTTGA 60.887 50.000 9.73 0.00 0.00 3.18
256 257 1.134694 GCGCTCGAAATGGGTTGAC 59.865 57.895 0.00 0.00 0.00 3.18
257 258 1.794222 CGCTCGAAATGGGTTGACC 59.206 57.895 0.00 0.00 40.81 4.02
258 259 0.673644 CGCTCGAAATGGGTTGACCT 60.674 55.000 0.00 0.00 41.11 3.85
259 260 0.804989 GCTCGAAATGGGTTGACCTG 59.195 55.000 0.00 0.00 41.11 4.00
260 261 1.453155 CTCGAAATGGGTTGACCTGG 58.547 55.000 0.00 0.00 41.11 4.45
261 262 1.003118 CTCGAAATGGGTTGACCTGGA 59.997 52.381 0.00 0.00 41.11 3.86
262 263 1.165270 CGAAATGGGTTGACCTGGAC 58.835 55.000 0.00 0.00 41.11 4.02
263 264 1.544537 CGAAATGGGTTGACCTGGACA 60.545 52.381 0.00 0.00 41.11 4.02
264 265 1.886542 GAAATGGGTTGACCTGGACAC 59.113 52.381 0.00 0.00 41.11 3.67
265 266 0.850100 AATGGGTTGACCTGGACACA 59.150 50.000 0.00 0.00 41.11 3.72
266 267 0.850100 ATGGGTTGACCTGGACACAA 59.150 50.000 0.00 1.14 41.11 3.33
267 268 0.626382 TGGGTTGACCTGGACACAAA 59.374 50.000 0.00 0.00 41.11 2.83
268 269 1.006043 TGGGTTGACCTGGACACAAAA 59.994 47.619 0.00 0.00 41.11 2.44
269 270 1.407618 GGGTTGACCTGGACACAAAAC 59.592 52.381 0.00 0.00 35.85 2.43
270 271 1.064952 GGTTGACCTGGACACAAAACG 59.935 52.381 0.00 0.00 0.00 3.60
271 272 0.736053 TTGACCTGGACACAAAACGC 59.264 50.000 0.00 0.00 0.00 4.84
272 273 0.393132 TGACCTGGACACAAAACGCA 60.393 50.000 0.00 0.00 0.00 5.24
273 274 0.028902 GACCTGGACACAAAACGCAC 59.971 55.000 0.00 0.00 0.00 5.34
274 275 0.678366 ACCTGGACACAAAACGCACA 60.678 50.000 0.00 0.00 0.00 4.57
275 276 0.453793 CCTGGACACAAAACGCACAA 59.546 50.000 0.00 0.00 0.00 3.33
276 277 1.135257 CCTGGACACAAAACGCACAAA 60.135 47.619 0.00 0.00 0.00 2.83
277 278 2.600731 CTGGACACAAAACGCACAAAA 58.399 42.857 0.00 0.00 0.00 2.44
278 279 2.329379 TGGACACAAAACGCACAAAAC 58.671 42.857 0.00 0.00 0.00 2.43
279 280 1.319079 GGACACAAAACGCACAAAACG 59.681 47.619 0.00 0.00 0.00 3.60
280 281 1.319079 GACACAAAACGCACAAAACGG 59.681 47.619 0.00 0.00 34.00 4.44
281 282 1.068472 ACACAAAACGCACAAAACGGA 60.068 42.857 0.00 0.00 34.00 4.69
282 283 1.319079 CACAAAACGCACAAAACGGAC 59.681 47.619 0.00 0.00 34.00 4.79
283 284 0.917939 CAAAACGCACAAAACGGACC 59.082 50.000 0.00 0.00 34.00 4.46
284 285 0.526662 AAAACGCACAAAACGGACCA 59.473 45.000 0.00 0.00 34.00 4.02
285 286 0.099791 AAACGCACAAAACGGACCAG 59.900 50.000 0.00 0.00 34.00 4.00
286 287 0.745128 AACGCACAAAACGGACCAGA 60.745 50.000 0.00 0.00 34.00 3.86
287 288 0.534203 ACGCACAAAACGGACCAGAT 60.534 50.000 0.00 0.00 34.00 2.90
288 289 0.110238 CGCACAAAACGGACCAGATG 60.110 55.000 0.00 0.00 0.00 2.90
289 290 0.240945 GCACAAAACGGACCAGATGG 59.759 55.000 0.00 0.00 42.17 3.51
290 291 0.881118 CACAAAACGGACCAGATGGG 59.119 55.000 3.48 0.00 44.81 4.00
323 324 3.365265 GCTGGGCCGACCTGTTTG 61.365 66.667 0.00 0.00 40.14 2.93
324 325 2.113139 CTGGGCCGACCTGTTTGT 59.887 61.111 0.00 0.00 41.11 2.83
325 326 1.528309 CTGGGCCGACCTGTTTGTT 60.528 57.895 0.00 0.00 41.11 2.83
326 327 1.515521 CTGGGCCGACCTGTTTGTTC 61.516 60.000 0.00 0.00 41.11 3.18
327 328 2.613506 GGGCCGACCTGTTTGTTCG 61.614 63.158 0.00 0.00 35.85 3.95
328 329 1.890510 GGCCGACCTGTTTGTTCGT 60.891 57.895 0.00 0.00 0.00 3.85
329 330 1.441732 GGCCGACCTGTTTGTTCGTT 61.442 55.000 0.00 0.00 0.00 3.85
330 331 0.379316 GCCGACCTGTTTGTTCGTTT 59.621 50.000 0.00 0.00 0.00 3.60
331 332 1.202211 GCCGACCTGTTTGTTCGTTTT 60.202 47.619 0.00 0.00 0.00 2.43
332 333 2.031930 GCCGACCTGTTTGTTCGTTTTA 59.968 45.455 0.00 0.00 0.00 1.52
333 334 3.610495 CCGACCTGTTTGTTCGTTTTAC 58.390 45.455 0.00 0.00 0.00 2.01
334 335 3.546616 CCGACCTGTTTGTTCGTTTTACC 60.547 47.826 0.00 0.00 0.00 2.85
335 336 3.546616 CGACCTGTTTGTTCGTTTTACCC 60.547 47.826 0.00 0.00 0.00 3.69
336 337 2.689471 ACCTGTTTGTTCGTTTTACCCC 59.311 45.455 0.00 0.00 0.00 4.95
337 338 2.688958 CCTGTTTGTTCGTTTTACCCCA 59.311 45.455 0.00 0.00 0.00 4.96
338 339 3.130693 CCTGTTTGTTCGTTTTACCCCAA 59.869 43.478 0.00 0.00 0.00 4.12
339 340 4.381718 CCTGTTTGTTCGTTTTACCCCAAA 60.382 41.667 0.00 0.00 0.00 3.28
340 341 4.492611 TGTTTGTTCGTTTTACCCCAAAC 58.507 39.130 0.00 0.00 41.05 2.93
341 342 4.021719 TGTTTGTTCGTTTTACCCCAAACA 60.022 37.500 10.64 10.64 45.31 2.83
342 343 4.373348 TTGTTCGTTTTACCCCAAACAG 57.627 40.909 0.00 0.00 36.58 3.16
343 344 3.618351 TGTTCGTTTTACCCCAAACAGA 58.382 40.909 0.00 0.00 36.58 3.41
344 345 3.377798 TGTTCGTTTTACCCCAAACAGAC 59.622 43.478 0.00 0.00 36.58 3.51
345 346 2.211806 TCGTTTTACCCCAAACAGACG 58.788 47.619 0.00 0.00 36.58 4.18
346 347 1.264826 CGTTTTACCCCAAACAGACGG 59.735 52.381 0.00 0.00 36.58 4.79
347 348 1.610038 GTTTTACCCCAAACAGACGGG 59.390 52.381 0.00 0.00 43.05 5.28
353 354 4.323477 CAAACAGACGGGGCCGGA 62.323 66.667 18.95 0.00 44.69 5.14
354 355 4.324991 AAACAGACGGGGCCGGAC 62.325 66.667 18.95 0.00 44.69 4.79
359 360 3.782443 GACGGGGCCGGACAGAAT 61.782 66.667 18.95 0.00 44.69 2.40
360 361 4.096003 ACGGGGCCGGACAGAATG 62.096 66.667 18.95 0.00 44.69 2.67
361 362 4.856801 CGGGGCCGGACAGAATGG 62.857 72.222 11.00 0.00 36.56 3.16
362 363 4.506255 GGGGCCGGACAGAATGGG 62.506 72.222 11.00 0.00 43.62 4.00
363 364 3.728373 GGGCCGGACAGAATGGGT 61.728 66.667 11.00 0.00 43.62 4.51
364 365 2.124695 GGCCGGACAGAATGGGTC 60.125 66.667 5.05 0.00 43.62 4.46
365 366 2.511600 GCCGGACAGAATGGGTCG 60.512 66.667 5.05 0.00 43.62 4.79
366 367 2.511600 CCGGACAGAATGGGTCGC 60.512 66.667 0.00 0.00 43.62 5.19
367 368 2.885644 CGGACAGAATGGGTCGCG 60.886 66.667 0.00 0.00 43.62 5.87
368 369 3.195698 GGACAGAATGGGTCGCGC 61.196 66.667 0.00 0.00 43.62 6.86
369 370 3.554692 GACAGAATGGGTCGCGCG 61.555 66.667 26.76 26.76 43.62 6.86
418 419 2.746904 TGGTGTGATTAAATCAGTGGCG 59.253 45.455 0.00 0.00 40.53 5.69
425 426 0.107703 TAAATCAGTGGCGAGCCCTG 60.108 55.000 19.67 19.67 36.43 4.45
448 449 3.405831 CAAATTCACTCCACTCTGCAGA 58.594 45.455 17.19 17.19 0.00 4.26
449 450 2.758736 ATTCACTCCACTCTGCAGAC 57.241 50.000 13.74 0.00 0.00 3.51
450 451 1.709578 TTCACTCCACTCTGCAGACT 58.290 50.000 13.74 0.15 0.00 3.24
451 452 0.964700 TCACTCCACTCTGCAGACTG 59.035 55.000 13.74 14.18 0.00 3.51
461 462 2.281345 GCAGACTGCAGTGCCTGT 60.281 61.111 27.27 11.65 44.26 4.00
462 463 2.323580 GCAGACTGCAGTGCCTGTC 61.324 63.158 27.27 22.83 44.26 3.51
463 464 1.670406 CAGACTGCAGTGCCTGTCC 60.670 63.158 27.27 7.82 33.76 4.02
464 465 1.840650 AGACTGCAGTGCCTGTCCT 60.841 57.895 27.27 10.35 33.76 3.85
465 466 0.542938 AGACTGCAGTGCCTGTCCTA 60.543 55.000 27.27 2.42 33.76 2.94
466 467 0.539051 GACTGCAGTGCCTGTCCTAT 59.461 55.000 27.27 0.00 33.43 2.57
469 470 0.983467 TGCAGTGCCTGTCCTATCAA 59.017 50.000 13.72 0.00 33.43 2.57
473 474 0.618458 GTGCCTGTCCTATCAACCCA 59.382 55.000 0.00 0.00 0.00 4.51
477 478 2.357154 GCCTGTCCTATCAACCCATTGT 60.357 50.000 0.00 0.00 37.11 2.71
681 731 7.059788 TCATGTTGCCTTAATTGCCTATAAGA 58.940 34.615 0.00 0.00 32.10 2.10
721 771 1.620739 TTGTTGCCTTGCCTTGCCAA 61.621 50.000 0.00 0.00 0.00 4.52
722 772 1.301165 GTTGCCTTGCCTTGCCAAG 60.301 57.895 0.00 0.00 41.40 3.61
723 773 1.761667 TTGCCTTGCCTTGCCAAGT 60.762 52.632 3.37 0.00 40.40 3.16
724 774 1.336632 TTGCCTTGCCTTGCCAAGTT 61.337 50.000 3.37 0.00 40.40 2.66
725 775 1.301165 GCCTTGCCTTGCCAAGTTG 60.301 57.895 3.37 0.00 40.40 3.16
726 776 1.301165 CCTTGCCTTGCCAAGTTGC 60.301 57.895 3.37 1.20 40.40 4.17
727 777 1.301165 CTTGCCTTGCCAAGTTGCC 60.301 57.895 3.37 0.00 37.89 4.52
728 778 2.030490 CTTGCCTTGCCAAGTTGCCA 62.030 55.000 3.37 0.00 37.89 4.92
787 838 3.897239 CCAGGCCATCACCATAAACTAA 58.103 45.455 5.01 0.00 0.00 2.24
788 839 3.885297 CCAGGCCATCACCATAAACTAAG 59.115 47.826 5.01 0.00 0.00 2.18
793 844 4.036852 GCCATCACCATAAACTAAGCTTCC 59.963 45.833 0.00 0.00 0.00 3.46
794 845 5.192927 CCATCACCATAAACTAAGCTTCCA 58.807 41.667 0.00 0.00 0.00 3.53
839 890 1.617947 AATGACACGCCTCCTCCTCC 61.618 60.000 0.00 0.00 0.00 4.30
840 891 2.363147 GACACGCCTCCTCCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
841 892 2.363147 ACACGCCTCCTCCTCCTC 60.363 66.667 0.00 0.00 0.00 3.71
842 893 3.151022 CACGCCTCCTCCTCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
843 894 3.351885 ACGCCTCCTCCTCCTCCT 61.352 66.667 0.00 0.00 0.00 3.69
844 895 2.520741 CGCCTCCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
845 896 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
846 897 2.710826 GCCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
847 898 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
945 996 6.479990 ACCAACATCGCCATATAATATCATCG 59.520 38.462 0.00 0.00 0.00 3.84
978 1030 4.085733 TCAAAGAAGACCTGAGAGAGGAG 58.914 47.826 0.00 0.00 46.33 3.69
979 1031 4.085733 CAAAGAAGACCTGAGAGAGGAGA 58.914 47.826 0.00 0.00 46.33 3.71
993 1045 4.044825 AGAGAGGAGAGAAACAGAGGGTTA 59.955 45.833 0.00 0.00 39.29 2.85
1081 1133 3.244181 GGAGGAGGCATTCATCTTCTCTC 60.244 52.174 0.00 0.00 36.83 3.20
1114 1166 5.005740 AGGTCGGTTTACCCTTCAAATTAC 58.994 41.667 0.00 0.00 40.71 1.89
1176 1228 3.008157 TGCTTGGGCATTTTCACATCAAT 59.992 39.130 0.00 0.00 44.28 2.57
1190 1244 9.506018 TTTTCACATCAATAACAATCTCTCTCA 57.494 29.630 0.00 0.00 0.00 3.27
1193 1247 7.978414 TCACATCAATAACAATCTCTCTCACTC 59.022 37.037 0.00 0.00 0.00 3.51
1201 1255 1.832883 TCTCTCTCACTCTGCAGGAC 58.167 55.000 15.13 0.00 0.00 3.85
1216 1270 2.650116 GGACCTCAAGGCTCTGCGA 61.650 63.158 0.00 0.00 39.32 5.10
1326 1384 1.839354 TCCTGCATGCTCCACAAGATA 59.161 47.619 20.33 0.00 0.00 1.98
1327 1385 2.158856 TCCTGCATGCTCCACAAGATAG 60.159 50.000 20.33 3.23 0.00 2.08
1328 1386 1.602851 CTGCATGCTCCACAAGATAGC 59.397 52.381 20.33 0.00 36.77 2.97
1340 1416 6.422333 TCCACAAGATAGCAAATATTCCACA 58.578 36.000 0.00 0.00 0.00 4.17
1342 1418 6.095300 CCACAAGATAGCAAATATTCCACACA 59.905 38.462 0.00 0.00 0.00 3.72
1355 1431 9.723601 AAATATTCCACACATTTGCAACTTATT 57.276 25.926 0.00 0.00 0.00 1.40
1357 1433 6.403866 TTCCACACATTTGCAACTTATTCT 57.596 33.333 0.00 0.00 0.00 2.40
1373 1452 6.612306 ACTTATTCTTGGTTCGCTCATTTTC 58.388 36.000 0.00 0.00 0.00 2.29
1441 1520 1.911269 TACGCTGTGAAGGCCCTCA 60.911 57.895 0.00 0.00 0.00 3.86
1464 1543 4.930696 TCAACACTGTAGATCACCTAGGA 58.069 43.478 17.98 0.00 0.00 2.94
1502 1581 3.569701 GTCTCCAGCCTTGTTGATCAAAA 59.430 43.478 10.35 0.76 35.48 2.44
1504 1583 2.297033 TCCAGCCTTGTTGATCAAAAGC 59.703 45.455 10.35 10.52 35.48 3.51
1598 1677 4.397103 TCAGCAGTAAATCTCCTTGCAATG 59.603 41.667 0.00 0.00 37.24 2.82
1601 1680 4.082571 GCAGTAAATCTCCTTGCAATGTGT 60.083 41.667 0.00 0.00 34.99 3.72
1607 1689 2.037121 TCTCCTTGCAATGTGTCTTCGA 59.963 45.455 0.00 0.00 0.00 3.71
1619 1705 3.251571 GTGTCTTCGAATTAACGAGGCT 58.748 45.455 0.00 0.00 43.04 4.58
1684 1770 2.747460 GGCCTGACGCAGCAATCA 60.747 61.111 0.00 0.00 40.31 2.57
1743 1833 2.238646 TCTTACCAGGTAAGTGGCCATG 59.761 50.000 30.75 10.94 43.95 3.66
1813 1910 6.772716 TCAAGAAGCAAGAAAAGTGGATAAGT 59.227 34.615 0.00 0.00 0.00 2.24
1842 1940 1.065199 GGGTGAGACATCTTGATGCCA 60.065 52.381 10.20 4.24 0.00 4.92
1844 1942 2.617308 GGTGAGACATCTTGATGCCATG 59.383 50.000 10.20 0.00 0.00 3.66
1914 2020 3.462021 ACTTCAGCGAGATGAATAAGGC 58.538 45.455 4.18 0.00 38.47 4.35
2048 2158 3.292159 TGTTGGCAGCAGCAGCAG 61.292 61.111 12.41 0.00 45.49 4.24
2350 2474 0.940833 TGCGCGACACTTCAAATTCA 59.059 45.000 12.10 0.00 0.00 2.57
2359 2483 6.429624 CGACACTTCAAATTCAGTGAAATGA 58.570 36.000 10.14 14.11 42.74 2.57
2360 2484 7.080099 CGACACTTCAAATTCAGTGAAATGAT 58.920 34.615 19.52 9.36 42.74 2.45
2361 2485 7.060289 CGACACTTCAAATTCAGTGAAATGATG 59.940 37.037 22.72 22.72 42.74 3.07
2469 2599 7.012704 ACAGATAAAAGATCGGATTCACCAATG 59.987 37.037 0.00 0.00 38.90 2.82
2614 2745 1.155889 TGCCTTACAATGCTGACACG 58.844 50.000 0.00 0.00 0.00 4.49
2717 2848 2.280628 GACGATTCCAAGGAAAGCGAT 58.719 47.619 24.51 13.97 38.45 4.58
2804 2935 2.234908 AGAACCACTGCAGGATAGTGTC 59.765 50.000 19.93 5.83 43.05 3.67
2828 2959 5.125578 CCCTTAGGCTGTAAAGGATGAAAAC 59.874 44.000 14.79 0.00 44.27 2.43
2876 3014 6.513180 TCCTCAGTACTCAGTTAACTTTGTG 58.487 40.000 5.07 0.48 0.00 3.33
2887 3025 6.706270 TCAGTTAACTTTGTGTGATTCCTCTC 59.294 38.462 5.07 0.00 0.00 3.20
3123 3263 4.655963 AGGCAATGTACACTCATCAAGTT 58.344 39.130 0.00 0.00 35.45 2.66
3125 3265 6.237901 AGGCAATGTACACTCATCAAGTTAA 58.762 36.000 0.00 0.00 35.45 2.01
3165 3305 4.881273 TGTGTTCTGTGCAGTTTGTCTATT 59.119 37.500 0.00 0.00 0.00 1.73
3212 3352 8.562949 TTGCTATTAAACTAATACTCCCTCCT 57.437 34.615 0.00 0.00 0.00 3.69
3213 3353 8.562949 TGCTATTAAACTAATACTCCCTCCTT 57.437 34.615 0.00 0.00 0.00 3.36
3214 3354 8.648693 TGCTATTAAACTAATACTCCCTCCTTC 58.351 37.037 0.00 0.00 0.00 3.46
3215 3355 8.095792 GCTATTAAACTAATACTCCCTCCTTCC 58.904 40.741 0.00 0.00 0.00 3.46
3216 3356 9.155785 CTATTAAACTAATACTCCCTCCTTCCA 57.844 37.037 0.00 0.00 0.00 3.53
3217 3357 7.817910 TTAAACTAATACTCCCTCCTTCCAA 57.182 36.000 0.00 0.00 0.00 3.53
3218 3358 6.713731 AAACTAATACTCCCTCCTTCCAAA 57.286 37.500 0.00 0.00 0.00 3.28
3219 3359 6.713731 AACTAATACTCCCTCCTTCCAAAA 57.286 37.500 0.00 0.00 0.00 2.44
3220 3360 6.713731 ACTAATACTCCCTCCTTCCAAAAA 57.286 37.500 0.00 0.00 0.00 1.94
3221 3361 7.285340 ACTAATACTCCCTCCTTCCAAAAAT 57.715 36.000 0.00 0.00 0.00 1.82
3222 3362 8.401955 ACTAATACTCCCTCCTTCCAAAAATA 57.598 34.615 0.00 0.00 0.00 1.40
3223 3363 8.842764 ACTAATACTCCCTCCTTCCAAAAATAA 58.157 33.333 0.00 0.00 0.00 1.40
3224 3364 9.343539 CTAATACTCCCTCCTTCCAAAAATAAG 57.656 37.037 0.00 0.00 0.00 1.73
3225 3365 5.600669 ACTCCCTCCTTCCAAAAATAAGT 57.399 39.130 0.00 0.00 0.00 2.24
3226 3366 5.325239 ACTCCCTCCTTCCAAAAATAAGTG 58.675 41.667 0.00 0.00 0.00 3.16
3227 3367 5.162980 ACTCCCTCCTTCCAAAAATAAGTGT 60.163 40.000 0.00 0.00 0.00 3.55
3228 3368 5.321927 TCCCTCCTTCCAAAAATAAGTGTC 58.678 41.667 0.00 0.00 0.00 3.67
3229 3369 5.074515 TCCCTCCTTCCAAAAATAAGTGTCT 59.925 40.000 0.00 0.00 0.00 3.41
3230 3370 5.416013 CCCTCCTTCCAAAAATAAGTGTCTC 59.584 44.000 0.00 0.00 0.00 3.36
3231 3371 6.003950 CCTCCTTCCAAAAATAAGTGTCTCA 58.996 40.000 0.00 0.00 0.00 3.27
3232 3372 6.490040 CCTCCTTCCAAAAATAAGTGTCTCAA 59.510 38.462 0.00 0.00 0.00 3.02
3233 3373 7.272037 TCCTTCCAAAAATAAGTGTCTCAAC 57.728 36.000 0.00 0.00 0.00 3.18
3234 3374 7.060421 TCCTTCCAAAAATAAGTGTCTCAACT 58.940 34.615 0.00 0.00 0.00 3.16
3235 3375 7.559897 TCCTTCCAAAAATAAGTGTCTCAACTT 59.440 33.333 0.00 0.00 42.89 2.66
3236 3376 8.197439 CCTTCCAAAAATAAGTGTCTCAACTTT 58.803 33.333 0.00 0.00 40.77 2.66
3274 3414 6.846325 ACAAAGTTGTACTAAGCTTGAGAC 57.154 37.500 9.86 4.39 40.16 3.36
3275 3415 6.346096 ACAAAGTTGTACTAAGCTTGAGACA 58.654 36.000 9.86 7.12 40.16 3.41
3276 3416 6.258068 ACAAAGTTGTACTAAGCTTGAGACAC 59.742 38.462 9.86 7.18 40.16 3.67
3277 3417 5.793030 AGTTGTACTAAGCTTGAGACACT 57.207 39.130 9.86 7.29 0.00 3.55
3278 3418 6.163135 AGTTGTACTAAGCTTGAGACACTT 57.837 37.500 9.86 0.00 0.00 3.16
3279 3419 7.286215 AGTTGTACTAAGCTTGAGACACTTA 57.714 36.000 9.86 0.00 0.00 2.24
3280 3420 7.897864 AGTTGTACTAAGCTTGAGACACTTAT 58.102 34.615 9.86 0.00 0.00 1.73
3281 3421 8.368668 AGTTGTACTAAGCTTGAGACACTTATT 58.631 33.333 9.86 0.00 0.00 1.40
3282 3422 8.989980 GTTGTACTAAGCTTGAGACACTTATTT 58.010 33.333 9.86 0.00 0.00 1.40
3283 3423 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
3284 3424 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
3285 3425 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
3286 3426 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
3287 3427 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
3288 3428 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
3289 3429 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
3290 3430 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3291 3431 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3292 3432 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3293 3433 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3294 3434 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3295 3435 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3296 3436 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3297 3437 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3298 3438 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3299 3439 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3300 3440 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
3342 3482 4.643463 TGTATTTTCTAGAAACGGGTGCA 58.357 39.130 17.51 10.56 0.00 4.57
3369 3509 7.923414 ATTTTGGATCACAGTTTACCTCTAC 57.077 36.000 0.00 0.00 0.00 2.59
3375 3515 7.618117 TGGATCACAGTTTACCTCTACAATCTA 59.382 37.037 0.00 0.00 0.00 1.98
3393 3533 5.968676 ATCTACCTATAACAGTGGGCAAA 57.031 39.130 0.00 0.00 0.00 3.68
3401 3541 6.322201 CCTATAACAGTGGGCAAAATGAGAAT 59.678 38.462 0.00 0.00 0.00 2.40
3433 3573 1.352017 TGATGAACTGGCTCATGGTGT 59.648 47.619 0.00 0.00 36.15 4.16
3448 3588 3.126001 TGGTGTCTGACAACATCCTTC 57.874 47.619 23.77 3.47 41.58 3.46
3519 3659 5.981915 TGCTTATGCATCTATCATAGATCGC 59.018 40.000 0.19 16.33 45.31 4.58
3527 3667 6.018913 GCATCTATCATAGATCGCCTGAAATG 60.019 42.308 3.98 0.00 43.41 2.32
3528 3668 5.414360 TCTATCATAGATCGCCTGAAATGC 58.586 41.667 0.00 0.00 0.00 3.56
3585 3727 8.932945 ATGCTATATGTCTATTGTTATGACCG 57.067 34.615 0.00 0.00 0.00 4.79
3586 3728 7.320399 TGCTATATGTCTATTGTTATGACCGG 58.680 38.462 0.00 0.00 0.00 5.28
3587 3729 6.255887 GCTATATGTCTATTGTTATGACCGGC 59.744 42.308 0.00 0.00 0.00 6.13
3588 3730 3.188159 TGTCTATTGTTATGACCGGCC 57.812 47.619 0.00 0.00 0.00 6.13
3589 3731 2.132762 GTCTATTGTTATGACCGGCCG 58.867 52.381 21.04 21.04 0.00 6.13
3590 3732 1.069513 TCTATTGTTATGACCGGCCGG 59.930 52.381 42.17 42.17 42.03 6.13
3626 3768 2.438434 CCCACCGGGCAAGCTTAG 60.438 66.667 6.32 0.00 35.35 2.18
3627 3769 3.134127 CCACCGGGCAAGCTTAGC 61.134 66.667 6.32 5.44 0.00 3.09
3633 3775 4.095590 GGCAAGCTTAGCCCACAA 57.904 55.556 22.16 0.00 46.50 3.33
3634 3776 1.885871 GGCAAGCTTAGCCCACAAG 59.114 57.895 22.16 0.27 46.50 3.16
3635 3777 0.895559 GGCAAGCTTAGCCCACAAGT 60.896 55.000 22.16 0.00 46.50 3.16
3636 3778 0.961753 GCAAGCTTAGCCCACAAGTT 59.038 50.000 0.00 0.00 0.00 2.66
3637 3779 2.159382 GCAAGCTTAGCCCACAAGTTA 58.841 47.619 0.00 0.00 0.00 2.24
3638 3780 2.755103 GCAAGCTTAGCCCACAAGTTAT 59.245 45.455 0.00 0.00 0.00 1.89
3639 3781 3.181496 GCAAGCTTAGCCCACAAGTTATC 60.181 47.826 0.00 0.00 0.00 1.75
3640 3782 4.265073 CAAGCTTAGCCCACAAGTTATCT 58.735 43.478 0.00 0.00 0.00 1.98
3641 3783 4.576330 AGCTTAGCCCACAAGTTATCTT 57.424 40.909 0.00 0.00 0.00 2.40
3642 3784 5.693769 AGCTTAGCCCACAAGTTATCTTA 57.306 39.130 0.00 0.00 32.07 2.10
3643 3785 5.675538 AGCTTAGCCCACAAGTTATCTTAG 58.324 41.667 0.00 0.00 32.07 2.18
3644 3786 5.189934 AGCTTAGCCCACAAGTTATCTTAGT 59.810 40.000 0.00 0.00 32.07 2.24
3645 3787 5.880887 GCTTAGCCCACAAGTTATCTTAGTT 59.119 40.000 0.00 0.00 32.07 2.24
3646 3788 6.374613 GCTTAGCCCACAAGTTATCTTAGTTT 59.625 38.462 0.00 0.00 32.07 2.66
3647 3789 7.094334 GCTTAGCCCACAAGTTATCTTAGTTTT 60.094 37.037 0.00 0.00 32.07 2.43
3648 3790 9.444600 CTTAGCCCACAAGTTATCTTAGTTTTA 57.555 33.333 0.00 0.00 32.07 1.52
3649 3791 9.969001 TTAGCCCACAAGTTATCTTAGTTTTAT 57.031 29.630 0.00 0.00 32.07 1.40
3650 3792 8.879427 AGCCCACAAGTTATCTTAGTTTTATT 57.121 30.769 0.00 0.00 32.07 1.40
3651 3793 9.309224 AGCCCACAAGTTATCTTAGTTTTATTT 57.691 29.630 0.00 0.00 32.07 1.40
3652 3794 9.569167 GCCCACAAGTTATCTTAGTTTTATTTC 57.431 33.333 0.00 0.00 32.07 2.17
3721 3863 7.751768 AAGCAATAAGACTATTCTATTGCCC 57.248 36.000 19.20 2.07 42.48 5.36
3722 3864 5.934625 AGCAATAAGACTATTCTATTGCCCG 59.065 40.000 19.20 0.00 42.48 6.13
3723 3865 5.122396 GCAATAAGACTATTCTATTGCCCGG 59.878 44.000 14.67 0.00 39.66 5.73
3724 3866 2.841442 AGACTATTCTATTGCCCGGC 57.159 50.000 1.04 1.04 0.00 6.13
3725 3867 2.330216 AGACTATTCTATTGCCCGGCT 58.670 47.619 11.61 0.00 0.00 5.52
3726 3868 2.300437 AGACTATTCTATTGCCCGGCTC 59.700 50.000 11.61 0.00 0.00 4.70
3727 3869 1.348036 ACTATTCTATTGCCCGGCTCC 59.652 52.381 11.61 0.00 0.00 4.70
3728 3870 0.690762 TATTCTATTGCCCGGCTCCC 59.309 55.000 11.61 0.00 0.00 4.30
3729 3871 1.352622 ATTCTATTGCCCGGCTCCCA 61.353 55.000 11.61 0.00 0.00 4.37
3730 3872 1.983119 TTCTATTGCCCGGCTCCCAG 61.983 60.000 11.61 2.95 0.00 4.45
3731 3873 2.366301 TATTGCCCGGCTCCCAGA 60.366 61.111 11.61 0.00 0.00 3.86
3732 3874 2.388890 CTATTGCCCGGCTCCCAGAG 62.389 65.000 11.61 0.00 0.00 3.35
3742 3884 2.121832 TCCCAGAGGAGCCGGAAA 59.878 61.111 5.05 0.00 37.19 3.13
3743 3885 2.269241 CCCAGAGGAGCCGGAAAC 59.731 66.667 5.05 0.00 33.47 2.78
3744 3886 2.269241 CCAGAGGAGCCGGAAACC 59.731 66.667 5.05 4.51 0.00 3.27
3745 3887 2.269241 CAGAGGAGCCGGAAACCC 59.731 66.667 5.05 0.00 0.00 4.11
3746 3888 2.122954 AGAGGAGCCGGAAACCCT 59.877 61.111 5.05 4.61 0.00 4.34
3747 3889 0.976073 CAGAGGAGCCGGAAACCCTA 60.976 60.000 5.05 0.00 0.00 3.53
3748 3890 0.252558 AGAGGAGCCGGAAACCCTAA 60.253 55.000 5.05 0.00 0.00 2.69
3749 3891 0.616891 GAGGAGCCGGAAACCCTAAA 59.383 55.000 5.05 0.00 0.00 1.85
3750 3892 0.327259 AGGAGCCGGAAACCCTAAAC 59.673 55.000 5.05 0.00 0.00 2.01
3751 3893 0.679002 GGAGCCGGAAACCCTAAACC 60.679 60.000 5.05 0.00 0.00 3.27
3752 3894 0.679002 GAGCCGGAAACCCTAAACCC 60.679 60.000 5.05 0.00 0.00 4.11
3753 3895 1.138228 AGCCGGAAACCCTAAACCCT 61.138 55.000 5.05 0.00 0.00 4.34
3754 3896 0.620030 GCCGGAAACCCTAAACCCTA 59.380 55.000 5.05 0.00 0.00 3.53
3755 3897 1.407851 GCCGGAAACCCTAAACCCTAG 60.408 57.143 5.05 0.00 0.00 3.02
3756 3898 1.407851 CCGGAAACCCTAAACCCTAGC 60.408 57.143 0.00 0.00 0.00 3.42
3757 3899 1.407851 CGGAAACCCTAAACCCTAGCC 60.408 57.143 0.00 0.00 0.00 3.93
3758 3900 1.407851 GGAAACCCTAAACCCTAGCCG 60.408 57.143 0.00 0.00 0.00 5.52
3759 3901 0.034767 AAACCCTAAACCCTAGCCGC 60.035 55.000 0.00 0.00 0.00 6.53
3760 3902 1.918467 AACCCTAAACCCTAGCCGCC 61.918 60.000 0.00 0.00 0.00 6.13
3761 3903 2.070650 CCCTAAACCCTAGCCGCCT 61.071 63.158 0.00 0.00 0.00 5.52
3762 3904 1.446366 CCTAAACCCTAGCCGCCTC 59.554 63.158 0.00 0.00 0.00 4.70
3763 3905 1.049289 CCTAAACCCTAGCCGCCTCT 61.049 60.000 0.00 0.00 0.00 3.69
3764 3906 0.831307 CTAAACCCTAGCCGCCTCTT 59.169 55.000 0.00 0.00 0.00 2.85
3765 3907 0.539986 TAAACCCTAGCCGCCTCTTG 59.460 55.000 0.00 0.00 0.00 3.02
3766 3908 2.821679 AAACCCTAGCCGCCTCTTGC 62.822 60.000 0.00 0.00 0.00 4.01
3767 3909 4.554036 CCCTAGCCGCCTCTTGCC 62.554 72.222 0.00 0.00 36.24 4.52
3768 3910 3.474570 CCTAGCCGCCTCTTGCCT 61.475 66.667 0.00 0.00 36.24 4.75
3769 3911 2.586792 CTAGCCGCCTCTTGCCTT 59.413 61.111 0.00 0.00 36.24 4.35
3770 3912 1.522580 CTAGCCGCCTCTTGCCTTC 60.523 63.158 0.00 0.00 36.24 3.46
3771 3913 3.371097 TAGCCGCCTCTTGCCTTCG 62.371 63.158 0.00 0.00 36.24 3.79
3793 3935 4.817063 CGCCGCAACCATCGCAAG 62.817 66.667 0.00 0.00 0.00 4.01
3794 3936 4.481112 GCCGCAACCATCGCAAGG 62.481 66.667 0.00 0.00 38.47 3.61
3795 3937 2.745884 CCGCAACCATCGCAAGGA 60.746 61.111 0.00 0.00 38.47 3.36
3796 3938 2.480555 CGCAACCATCGCAAGGAC 59.519 61.111 0.00 0.00 38.47 3.85
3797 3939 2.480555 GCAACCATCGCAAGGACG 59.519 61.111 0.00 0.00 38.47 4.79
3798 3940 3.039202 GCAACCATCGCAAGGACGG 62.039 63.158 0.00 0.00 38.47 4.79
3799 3941 2.746277 AACCATCGCAAGGACGGC 60.746 61.111 0.00 0.00 38.47 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.125633 GCCTCCTCGAAACCCGAC 60.126 66.667 0.00 0.00 43.23 4.79
1 2 3.387947 GGCCTCCTCGAAACCCGA 61.388 66.667 0.00 0.00 46.35 5.14
2 3 4.814294 CGGCCTCCTCGAAACCCG 62.814 72.222 0.00 0.00 40.25 5.28
20 21 4.181010 CTGCCCCACTCCATCCCG 62.181 72.222 0.00 0.00 0.00 5.14
21 22 3.017581 ACTGCCCCACTCCATCCC 61.018 66.667 0.00 0.00 0.00 3.85
22 23 2.273449 CACTGCCCCACTCCATCC 59.727 66.667 0.00 0.00 0.00 3.51
23 24 1.377725 CACACTGCCCCACTCCATC 60.378 63.158 0.00 0.00 0.00 3.51
24 25 2.759114 CACACTGCCCCACTCCAT 59.241 61.111 0.00 0.00 0.00 3.41
25 26 3.569210 CCACACTGCCCCACTCCA 61.569 66.667 0.00 0.00 0.00 3.86
26 27 3.249189 TCCACACTGCCCCACTCC 61.249 66.667 0.00 0.00 0.00 3.85
27 28 2.032681 GTCCACACTGCCCCACTC 59.967 66.667 0.00 0.00 0.00 3.51
28 29 3.941188 CGTCCACACTGCCCCACT 61.941 66.667 0.00 0.00 0.00 4.00
29 30 3.936203 TCGTCCACACTGCCCCAC 61.936 66.667 0.00 0.00 0.00 4.61
30 31 3.936203 GTCGTCCACACTGCCCCA 61.936 66.667 0.00 0.00 0.00 4.96
32 33 3.986006 TCGTCGTCCACACTGCCC 61.986 66.667 0.00 0.00 0.00 5.36
33 34 2.733593 GTCGTCGTCCACACTGCC 60.734 66.667 0.00 0.00 0.00 4.85
34 35 2.733593 GGTCGTCGTCCACACTGC 60.734 66.667 3.49 0.00 0.00 4.40
35 36 2.428569 CGGTCGTCGTCCACACTG 60.429 66.667 9.20 0.00 0.00 3.66
36 37 3.667282 CCGGTCGTCGTCCACACT 61.667 66.667 9.20 0.00 37.11 3.55
37 38 3.886329 GACCGGTCGTCGTCCACAC 62.886 68.421 20.85 0.00 37.11 3.82
38 39 3.663176 GACCGGTCGTCGTCCACA 61.663 66.667 20.85 0.00 37.11 4.17
39 40 4.410743 GGACCGGTCGTCGTCCAC 62.411 72.222 27.68 7.98 42.99 4.02
40 41 4.953010 TGGACCGGTCGTCGTCCA 62.953 66.667 27.68 17.11 42.99 4.02
41 42 4.410743 GTGGACCGGTCGTCGTCC 62.411 72.222 27.68 14.50 42.99 4.79
42 43 4.748679 CGTGGACCGGTCGTCGTC 62.749 72.222 29.08 17.78 42.99 4.20
61 62 3.014623 CCGTCCTTCTTAAATGGGGAAC 58.985 50.000 0.00 0.00 0.00 3.62
62 63 2.645797 ACCGTCCTTCTTAAATGGGGAA 59.354 45.455 0.00 0.00 0.00 3.97
63 64 2.026636 CACCGTCCTTCTTAAATGGGGA 60.027 50.000 0.00 0.00 0.00 4.81
64 65 2.026636 TCACCGTCCTTCTTAAATGGGG 60.027 50.000 0.00 0.00 0.00 4.96
65 66 3.007635 GTCACCGTCCTTCTTAAATGGG 58.992 50.000 0.00 0.00 0.00 4.00
66 67 3.007635 GGTCACCGTCCTTCTTAAATGG 58.992 50.000 0.00 0.00 0.00 3.16
67 68 3.939066 AGGTCACCGTCCTTCTTAAATG 58.061 45.455 0.00 0.00 30.18 2.32
68 69 4.635699 AAGGTCACCGTCCTTCTTAAAT 57.364 40.909 0.00 0.00 40.80 1.40
78 79 1.004918 CCAGTGGAAGGTCACCGTC 60.005 63.158 1.68 0.15 38.34 4.79
79 80 2.516888 CCCAGTGGAAGGTCACCGT 61.517 63.158 11.95 0.00 38.34 4.83
80 81 2.347490 CCCAGTGGAAGGTCACCG 59.653 66.667 11.95 0.00 38.34 4.94
81 82 2.034221 GCCCAGTGGAAGGTCACC 59.966 66.667 11.95 0.00 38.34 4.02
82 83 2.034221 GGCCCAGTGGAAGGTCAC 59.966 66.667 11.95 0.00 37.89 3.67
83 84 3.636231 CGGCCCAGTGGAAGGTCA 61.636 66.667 11.95 0.00 0.00 4.02
84 85 2.670148 ATCGGCCCAGTGGAAGGTC 61.670 63.158 11.95 0.00 0.00 3.85
85 86 2.610859 ATCGGCCCAGTGGAAGGT 60.611 61.111 11.95 0.00 0.00 3.50
86 87 2.124570 CATCGGCCCAGTGGAAGG 60.125 66.667 11.95 0.00 0.00 3.46
87 88 1.450312 GTCATCGGCCCAGTGGAAG 60.450 63.158 11.95 1.09 0.00 3.46
88 89 2.184020 CTGTCATCGGCCCAGTGGAA 62.184 60.000 11.95 0.00 0.00 3.53
89 90 2.606213 TGTCATCGGCCCAGTGGA 60.606 61.111 11.95 0.00 0.00 4.02
90 91 2.124983 CTGTCATCGGCCCAGTGG 60.125 66.667 0.63 0.63 0.00 4.00
91 92 2.124983 CCTGTCATCGGCCCAGTG 60.125 66.667 0.00 0.00 0.00 3.66
92 93 2.607750 ACCTGTCATCGGCCCAGT 60.608 61.111 0.00 0.00 0.00 4.00
93 94 2.124983 CACCTGTCATCGGCCCAG 60.125 66.667 0.00 0.00 0.00 4.45
94 95 3.716195 CCACCTGTCATCGGCCCA 61.716 66.667 0.00 0.00 0.00 5.36
95 96 4.489771 CCCACCTGTCATCGGCCC 62.490 72.222 0.00 0.00 0.00 5.80
96 97 4.489771 CCCCACCTGTCATCGGCC 62.490 72.222 0.00 0.00 0.00 6.13
98 99 4.489771 GGCCCCACCTGTCATCGG 62.490 72.222 0.00 0.00 34.51 4.18
99 100 4.838152 CGGCCCCACCTGTCATCG 62.838 72.222 0.00 0.00 35.61 3.84
100 101 4.489771 CCGGCCCCACCTGTCATC 62.490 72.222 0.00 0.00 35.61 2.92
120 121 1.142314 AACATCAATGCGCATGGGC 59.858 52.632 26.09 26.55 0.00 5.36
121 122 0.528901 CCAACATCAATGCGCATGGG 60.529 55.000 26.09 19.29 0.00 4.00
122 123 1.149361 GCCAACATCAATGCGCATGG 61.149 55.000 26.09 22.52 0.00 3.66
123 124 1.476235 CGCCAACATCAATGCGCATG 61.476 55.000 26.09 15.88 40.58 4.06
124 125 1.226745 CGCCAACATCAATGCGCAT 60.227 52.632 19.28 19.28 40.58 4.73
125 126 2.178769 CGCCAACATCAATGCGCA 59.821 55.556 14.96 14.96 40.58 6.09
126 127 2.580326 CCGCCAACATCAATGCGC 60.580 61.111 0.00 0.00 45.28 6.09
127 128 2.102749 CCCGCCAACATCAATGCG 59.897 61.111 0.00 0.00 46.14 4.73
128 129 1.153784 CACCCGCCAACATCAATGC 60.154 57.895 0.00 0.00 0.00 3.56
129 130 1.512230 CCACCCGCCAACATCAATG 59.488 57.895 0.00 0.00 0.00 2.82
130 131 1.682005 CCCACCCGCCAACATCAAT 60.682 57.895 0.00 0.00 0.00 2.57
131 132 2.282816 CCCACCCGCCAACATCAA 60.283 61.111 0.00 0.00 0.00 2.57
132 133 3.253061 TCCCACCCGCCAACATCA 61.253 61.111 0.00 0.00 0.00 3.07
133 134 2.438434 CTCCCACCCGCCAACATC 60.438 66.667 0.00 0.00 0.00 3.06
134 135 4.047125 CCTCCCACCCGCCAACAT 62.047 66.667 0.00 0.00 0.00 2.71
136 137 3.324108 TACCTCCCACCCGCCAAC 61.324 66.667 0.00 0.00 0.00 3.77
137 138 3.006728 CTACCTCCCACCCGCCAA 61.007 66.667 0.00 0.00 0.00 4.52
140 141 3.782443 CACCTACCTCCCACCCGC 61.782 72.222 0.00 0.00 0.00 6.13
141 142 3.081409 CCACCTACCTCCCACCCG 61.081 72.222 0.00 0.00 0.00 5.28
142 143 3.408853 GCCACCTACCTCCCACCC 61.409 72.222 0.00 0.00 0.00 4.61
143 144 3.408853 GGCCACCTACCTCCCACC 61.409 72.222 0.00 0.00 0.00 4.61
144 145 3.782443 CGGCCACCTACCTCCCAC 61.782 72.222 2.24 0.00 0.00 4.61
192 193 3.764049 GACACCGAACAGACGCGC 61.764 66.667 5.73 0.00 0.00 6.86
193 194 3.103911 GGACACCGAACAGACGCG 61.104 66.667 3.53 3.53 0.00 6.01
215 216 4.973055 TGCGTCGGGTTTGGGTCG 62.973 66.667 0.00 0.00 0.00 4.79
216 217 2.592287 TTGCGTCGGGTTTGGGTC 60.592 61.111 0.00 0.00 0.00 4.46
217 218 2.593436 CTTGCGTCGGGTTTGGGT 60.593 61.111 0.00 0.00 0.00 4.51
218 219 1.730451 AAACTTGCGTCGGGTTTGGG 61.730 55.000 0.00 0.00 32.84 4.12
219 220 0.593773 CAAACTTGCGTCGGGTTTGG 60.594 55.000 9.15 0.00 43.19 3.28
220 221 1.206115 GCAAACTTGCGTCGGGTTTG 61.206 55.000 11.78 11.78 46.97 2.93
221 222 1.065109 GCAAACTTGCGTCGGGTTT 59.935 52.632 0.00 0.00 45.11 3.27
222 223 2.719354 GCAAACTTGCGTCGGGTT 59.281 55.556 0.00 0.00 45.11 4.11
231 232 1.330306 CCATTTCGAGCGCAAACTTG 58.670 50.000 11.47 0.00 0.00 3.16
232 233 0.240945 CCCATTTCGAGCGCAAACTT 59.759 50.000 11.47 0.00 0.00 2.66
233 234 0.889186 ACCCATTTCGAGCGCAAACT 60.889 50.000 11.47 0.00 0.00 2.66
234 235 0.039527 AACCCATTTCGAGCGCAAAC 60.040 50.000 11.47 0.00 0.00 2.93
235 236 0.039617 CAACCCATTTCGAGCGCAAA 60.040 50.000 11.47 1.09 0.00 3.68
236 237 0.886938 TCAACCCATTTCGAGCGCAA 60.887 50.000 11.47 0.00 0.00 4.85
237 238 1.302112 TCAACCCATTTCGAGCGCA 60.302 52.632 11.47 0.00 0.00 6.09
238 239 1.134694 GTCAACCCATTTCGAGCGC 59.865 57.895 0.00 0.00 0.00 5.92
239 240 0.673644 AGGTCAACCCATTTCGAGCG 60.674 55.000 0.00 0.00 36.42 5.03
240 241 0.804989 CAGGTCAACCCATTTCGAGC 59.195 55.000 0.00 0.00 36.42 5.03
241 242 1.003118 TCCAGGTCAACCCATTTCGAG 59.997 52.381 0.00 0.00 36.42 4.04
242 243 1.060729 TCCAGGTCAACCCATTTCGA 58.939 50.000 0.00 0.00 36.42 3.71
243 244 1.165270 GTCCAGGTCAACCCATTTCG 58.835 55.000 0.00 0.00 36.42 3.46
244 245 1.886542 GTGTCCAGGTCAACCCATTTC 59.113 52.381 0.00 0.00 36.42 2.17
245 246 1.216678 TGTGTCCAGGTCAACCCATTT 59.783 47.619 0.00 0.00 36.42 2.32
246 247 0.850100 TGTGTCCAGGTCAACCCATT 59.150 50.000 0.00 0.00 36.42 3.16
247 248 0.850100 TTGTGTCCAGGTCAACCCAT 59.150 50.000 0.00 0.00 36.42 4.00
248 249 0.626382 TTTGTGTCCAGGTCAACCCA 59.374 50.000 0.00 0.00 36.42 4.51
249 250 1.407618 GTTTTGTGTCCAGGTCAACCC 59.592 52.381 0.00 0.00 36.42 4.11
250 251 1.064952 CGTTTTGTGTCCAGGTCAACC 59.935 52.381 0.00 0.00 0.00 3.77
251 252 1.533129 GCGTTTTGTGTCCAGGTCAAC 60.533 52.381 0.00 0.00 0.00 3.18
252 253 0.736053 GCGTTTTGTGTCCAGGTCAA 59.264 50.000 0.00 0.00 0.00 3.18
253 254 0.393132 TGCGTTTTGTGTCCAGGTCA 60.393 50.000 0.00 0.00 0.00 4.02
254 255 0.028902 GTGCGTTTTGTGTCCAGGTC 59.971 55.000 0.00 0.00 0.00 3.85
255 256 0.678366 TGTGCGTTTTGTGTCCAGGT 60.678 50.000 0.00 0.00 0.00 4.00
256 257 0.453793 TTGTGCGTTTTGTGTCCAGG 59.546 50.000 0.00 0.00 0.00 4.45
257 258 2.270275 TTTGTGCGTTTTGTGTCCAG 57.730 45.000 0.00 0.00 0.00 3.86
258 259 2.329379 GTTTTGTGCGTTTTGTGTCCA 58.671 42.857 0.00 0.00 0.00 4.02
259 260 1.319079 CGTTTTGTGCGTTTTGTGTCC 59.681 47.619 0.00 0.00 0.00 4.02
260 261 1.319079 CCGTTTTGTGCGTTTTGTGTC 59.681 47.619 0.00 0.00 0.00 3.67
261 262 1.068472 TCCGTTTTGTGCGTTTTGTGT 60.068 42.857 0.00 0.00 0.00 3.72
262 263 1.319079 GTCCGTTTTGTGCGTTTTGTG 59.681 47.619 0.00 0.00 0.00 3.33
263 264 1.619983 GTCCGTTTTGTGCGTTTTGT 58.380 45.000 0.00 0.00 0.00 2.83
264 265 0.917939 GGTCCGTTTTGTGCGTTTTG 59.082 50.000 0.00 0.00 0.00 2.44
265 266 0.526662 TGGTCCGTTTTGTGCGTTTT 59.473 45.000 0.00 0.00 0.00 2.43
266 267 0.099791 CTGGTCCGTTTTGTGCGTTT 59.900 50.000 0.00 0.00 0.00 3.60
267 268 0.745128 TCTGGTCCGTTTTGTGCGTT 60.745 50.000 0.00 0.00 0.00 4.84
268 269 0.534203 ATCTGGTCCGTTTTGTGCGT 60.534 50.000 0.00 0.00 0.00 5.24
269 270 0.110238 CATCTGGTCCGTTTTGTGCG 60.110 55.000 0.00 0.00 0.00 5.34
270 271 0.240945 CCATCTGGTCCGTTTTGTGC 59.759 55.000 0.00 0.00 0.00 4.57
271 272 0.881118 CCCATCTGGTCCGTTTTGTG 59.119 55.000 0.00 0.00 0.00 3.33
272 273 3.339547 CCCATCTGGTCCGTTTTGT 57.660 52.632 0.00 0.00 0.00 2.83
306 307 3.365265 CAAACAGGTCGGCCCAGC 61.365 66.667 0.08 0.00 34.66 4.85
307 308 1.515521 GAACAAACAGGTCGGCCCAG 61.516 60.000 0.08 0.00 34.66 4.45
308 309 1.527380 GAACAAACAGGTCGGCCCA 60.527 57.895 0.08 0.00 34.66 5.36
309 310 3.351450 GAACAAACAGGTCGGCCC 58.649 61.111 0.08 0.00 34.57 5.80
314 315 3.243168 GGGGTAAAACGAACAAACAGGTC 60.243 47.826 0.00 0.00 0.00 3.85
315 316 2.689471 GGGGTAAAACGAACAAACAGGT 59.311 45.455 0.00 0.00 0.00 4.00
316 317 2.688958 TGGGGTAAAACGAACAAACAGG 59.311 45.455 0.00 0.00 0.00 4.00
317 318 4.373348 TTGGGGTAAAACGAACAAACAG 57.627 40.909 0.00 0.00 0.00 3.16
318 319 4.492611 GTTTGGGGTAAAACGAACAAACA 58.507 39.130 11.76 0.00 44.07 2.83
319 320 4.492611 TGTTTGGGGTAAAACGAACAAAC 58.507 39.130 10.21 10.21 44.58 2.93
320 321 4.461781 TCTGTTTGGGGTAAAACGAACAAA 59.538 37.500 0.00 0.00 41.92 2.83
321 322 4.015084 TCTGTTTGGGGTAAAACGAACAA 58.985 39.130 0.00 0.00 41.92 2.83
322 323 3.377798 GTCTGTTTGGGGTAAAACGAACA 59.622 43.478 0.00 0.00 41.92 3.18
323 324 3.546616 CGTCTGTTTGGGGTAAAACGAAC 60.547 47.826 0.00 0.00 41.92 3.95
324 325 2.613133 CGTCTGTTTGGGGTAAAACGAA 59.387 45.455 0.00 0.00 41.92 3.85
325 326 2.211806 CGTCTGTTTGGGGTAAAACGA 58.788 47.619 0.00 0.00 41.92 3.85
326 327 1.264826 CCGTCTGTTTGGGGTAAAACG 59.735 52.381 0.00 0.00 41.92 3.60
327 328 1.610038 CCCGTCTGTTTGGGGTAAAAC 59.390 52.381 0.00 0.00 42.05 2.43
328 329 1.984066 CCCGTCTGTTTGGGGTAAAA 58.016 50.000 0.00 0.00 42.05 1.52
329 330 3.729726 CCCGTCTGTTTGGGGTAAA 57.270 52.632 0.00 0.00 42.05 2.01
336 337 4.323477 TCCGGCCCCGTCTGTTTG 62.323 66.667 5.93 0.00 37.81 2.93
337 338 4.324991 GTCCGGCCCCGTCTGTTT 62.325 66.667 5.93 0.00 37.81 2.83
342 343 3.782443 ATTCTGTCCGGCCCCGTC 61.782 66.667 5.93 0.00 37.81 4.79
343 344 4.096003 CATTCTGTCCGGCCCCGT 62.096 66.667 5.93 0.00 37.81 5.28
344 345 4.856801 CCATTCTGTCCGGCCCCG 62.857 72.222 0.00 0.00 39.44 5.73
345 346 4.506255 CCCATTCTGTCCGGCCCC 62.506 72.222 0.00 0.00 0.00 5.80
346 347 3.699134 GACCCATTCTGTCCGGCCC 62.699 68.421 0.00 0.00 0.00 5.80
347 348 2.124695 GACCCATTCTGTCCGGCC 60.125 66.667 0.00 0.00 0.00 6.13
348 349 2.511600 CGACCCATTCTGTCCGGC 60.512 66.667 0.00 0.00 0.00 6.13
349 350 2.511600 GCGACCCATTCTGTCCGG 60.512 66.667 0.00 0.00 0.00 5.14
350 351 2.885644 CGCGACCCATTCTGTCCG 60.886 66.667 0.00 0.00 0.00 4.79
351 352 3.195698 GCGCGACCCATTCTGTCC 61.196 66.667 12.10 0.00 0.00 4.02
352 353 3.554692 CGCGCGACCCATTCTGTC 61.555 66.667 28.94 0.00 0.00 3.51
366 367 3.599285 TTAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
367 368 2.038837 GTTAGGCCAACTCCACCGC 61.039 63.158 5.01 0.00 34.06 5.68
368 369 1.376812 GGTTAGGCCAACTCCACCG 60.377 63.158 5.01 0.00 37.30 4.94
369 370 1.765074 TGGTTAGGCCAACTCCACC 59.235 57.895 5.01 1.53 45.94 4.61
377 378 1.534476 TGTCGAGGTGGTTAGGCCA 60.534 57.895 5.01 0.00 46.95 5.36
378 379 1.079336 GTGTCGAGGTGGTTAGGCC 60.079 63.158 0.00 0.00 37.90 5.19
379 380 0.389948 CAGTGTCGAGGTGGTTAGGC 60.390 60.000 0.00 0.00 0.00 3.93
380 381 0.246635 CCAGTGTCGAGGTGGTTAGG 59.753 60.000 0.00 0.00 0.00 2.69
381 382 0.966920 ACCAGTGTCGAGGTGGTTAG 59.033 55.000 7.33 0.00 42.10 2.34
382 383 3.136620 ACCAGTGTCGAGGTGGTTA 57.863 52.632 7.33 0.00 42.10 2.85
418 419 0.813821 GAGTGAATTTGGCAGGGCTC 59.186 55.000 0.00 0.00 0.00 4.70
425 426 1.200948 GCAGAGTGGAGTGAATTTGGC 59.799 52.381 0.00 0.00 0.00 4.52
430 431 2.028294 CAGTCTGCAGAGTGGAGTGAAT 60.028 50.000 34.71 2.38 40.79 2.57
453 454 0.912486 GGGTTGATAGGACAGGCACT 59.088 55.000 0.00 0.00 43.88 4.40
454 455 0.618458 TGGGTTGATAGGACAGGCAC 59.382 55.000 0.00 0.00 0.00 5.01
455 456 1.595311 ATGGGTTGATAGGACAGGCA 58.405 50.000 0.00 0.00 0.00 4.75
456 457 2.301346 CAATGGGTTGATAGGACAGGC 58.699 52.381 0.00 0.00 37.53 4.85
457 458 3.652057 ACAATGGGTTGATAGGACAGG 57.348 47.619 0.00 0.00 38.71 4.00
469 470 0.773644 AGGAGCAGTCAACAATGGGT 59.226 50.000 0.00 0.00 0.00 4.51
650 698 2.507407 TTAAGGCAACATGAGACCCC 57.493 50.000 0.00 0.00 41.41 4.95
787 838 4.323562 GGTATTTGACTGGTACTGGAAGCT 60.324 45.833 0.00 0.00 37.60 3.74
788 839 3.939592 GGTATTTGACTGGTACTGGAAGC 59.060 47.826 0.00 0.00 37.60 3.86
793 844 4.174009 CGACAGGTATTTGACTGGTACTG 58.826 47.826 0.00 0.00 39.00 2.74
794 845 3.830755 ACGACAGGTATTTGACTGGTACT 59.169 43.478 0.00 0.00 39.00 2.73
839 890 1.008449 TGGGTTAAGGAGGAGGAGGAG 59.992 57.143 0.00 0.00 0.00 3.69
840 891 1.098589 TGGGTTAAGGAGGAGGAGGA 58.901 55.000 0.00 0.00 0.00 3.71
841 892 1.771255 CATGGGTTAAGGAGGAGGAGG 59.229 57.143 0.00 0.00 0.00 4.30
842 893 1.141858 GCATGGGTTAAGGAGGAGGAG 59.858 57.143 0.00 0.00 0.00 3.69
843 894 1.213296 GCATGGGTTAAGGAGGAGGA 58.787 55.000 0.00 0.00 0.00 3.71
844 895 0.179045 CGCATGGGTTAAGGAGGAGG 60.179 60.000 0.68 0.00 0.00 4.30
845 896 0.179045 CCGCATGGGTTAAGGAGGAG 60.179 60.000 9.14 0.00 0.00 3.69
846 897 1.912220 CCGCATGGGTTAAGGAGGA 59.088 57.895 9.14 0.00 0.00 3.71
847 898 1.823899 GCCGCATGGGTTAAGGAGG 60.824 63.158 9.14 0.00 38.44 4.30
887 938 2.421424 GAAGCACTCATGGTGATGAACC 59.579 50.000 15.81 0.00 44.41 3.62
945 996 3.938334 GGTCTTCTTTGATCAGGAAGCTC 59.062 47.826 23.92 19.86 37.11 4.09
978 1030 6.072452 CCATTCAAACTAACCCTCTGTTTCTC 60.072 42.308 0.00 0.00 38.42 2.87
979 1031 5.770162 CCATTCAAACTAACCCTCTGTTTCT 59.230 40.000 0.00 0.00 38.42 2.52
993 1045 1.615392 GCTGCTTCCACCATTCAAACT 59.385 47.619 0.00 0.00 0.00 2.66
1102 1154 0.450184 CACGGGCGTAATTTGAAGGG 59.550 55.000 0.00 0.00 0.00 3.95
1176 1228 4.159321 CCTGCAGAGTGAGAGAGATTGTTA 59.841 45.833 17.39 0.00 0.00 2.41
1190 1244 1.835927 GCCTTGAGGTCCTGCAGAGT 61.836 60.000 17.39 0.00 37.57 3.24
1193 1247 1.078567 GAGCCTTGAGGTCCTGCAG 60.079 63.158 6.78 6.78 36.99 4.41
1328 1386 7.424227 AAGTTGCAAATGTGTGGAATATTTG 57.576 32.000 0.00 0.00 45.37 2.32
1329 1387 9.723601 AATAAGTTGCAAATGTGTGGAATATTT 57.276 25.926 0.00 0.00 31.08 1.40
1330 1388 9.369904 GAATAAGTTGCAAATGTGTGGAATATT 57.630 29.630 0.00 0.00 31.08 1.28
1332 1390 8.121305 AGAATAAGTTGCAAATGTGTGGAATA 57.879 30.769 0.00 0.00 31.08 1.75
1340 1416 5.920273 CGAACCAAGAATAAGTTGCAAATGT 59.080 36.000 0.00 0.00 0.00 2.71
1342 1418 4.923281 GCGAACCAAGAATAAGTTGCAAAT 59.077 37.500 0.00 0.00 0.00 2.32
1355 1431 5.067153 TGAAAAGAAAATGAGCGAACCAAGA 59.933 36.000 0.00 0.00 0.00 3.02
1357 1433 5.040635 GTGAAAAGAAAATGAGCGAACCAA 58.959 37.500 0.00 0.00 0.00 3.67
1441 1520 5.519808 TCCTAGGTGATCTACAGTGTTGAT 58.480 41.667 18.35 18.35 31.47 2.57
1464 1543 5.455899 GCTGGAGACTTTGAAGGATATGGAT 60.456 44.000 0.00 0.00 0.00 3.41
1504 1583 3.685214 CTTCGGCCACCTCGTCGAG 62.685 68.421 15.53 15.53 33.11 4.04
1560 1639 1.017387 GCTGAATTTAGGAGGCACCG 58.983 55.000 0.00 0.00 44.74 4.94
1598 1677 3.060895 CAGCCTCGTTAATTCGAAGACAC 59.939 47.826 3.35 0.00 39.34 3.67
1601 1680 3.587797 ACAGCCTCGTTAATTCGAAGA 57.412 42.857 3.35 0.00 39.34 2.87
1607 1689 3.886505 TGAAACCAACAGCCTCGTTAATT 59.113 39.130 0.00 0.00 0.00 1.40
1619 1705 3.558931 TTGAGCTCTCTGAAACCAACA 57.441 42.857 16.19 0.00 0.00 3.33
1743 1833 3.691609 CAGGAAAGGCACAAAGGTATCTC 59.308 47.826 0.00 0.00 0.00 2.75
1813 1910 1.272490 GATGTCTCACCCGAGTTGACA 59.728 52.381 5.40 5.40 39.62 3.58
1842 1940 2.753452 CCTGCTGAAATCACTCAAGCAT 59.247 45.455 0.00 0.00 32.67 3.79
1844 1942 2.419324 CTCCTGCTGAAATCACTCAAGC 59.581 50.000 0.00 0.00 0.00 4.01
1914 2020 1.895798 TCTGTGTAGTCCTGCTCTTGG 59.104 52.381 0.00 0.00 0.00 3.61
2048 2158 2.427232 TTTGTTTGAGCTGCAGATGC 57.573 45.000 20.43 2.30 42.50 3.91
2259 2371 4.018870 TGGTGGGTATTGCAGTATCAGAAA 60.019 41.667 1.61 0.00 0.00 2.52
2350 2474 8.723942 GGTAACTCTGTAATCATCATTTCACT 57.276 34.615 0.00 0.00 0.00 3.41
2410 2540 8.506168 AAACAATATTGATCACGGAACAGTAT 57.494 30.769 22.16 0.00 0.00 2.12
2413 2543 6.963242 CAGAAACAATATTGATCACGGAACAG 59.037 38.462 22.16 0.00 0.00 3.16
2469 2599 3.909430 TGTGAGTGGAGTTGTCGAATAC 58.091 45.455 0.00 0.00 0.00 1.89
2614 2745 6.500910 TGCATCTTCAGCAACATGAAATATC 58.499 36.000 0.00 0.00 38.66 1.63
2804 2935 4.503714 TTCATCCTTTACAGCCTAAGGG 57.496 45.455 0.00 0.17 41.05 3.95
2828 2959 8.091449 GGATAGTAATGGACACTCCTATGAAAG 58.909 40.741 0.00 0.00 37.46 2.62
2995 3135 1.229428 CAACAACGTCATCCAGCACT 58.771 50.000 0.00 0.00 0.00 4.40
3113 3253 5.455392 CCACAGTTTGCTTAACTTGATGAG 58.545 41.667 2.57 0.00 44.73 2.90
3123 3263 2.757868 ACAACAAGCCACAGTTTGCTTA 59.242 40.909 6.74 0.00 45.59 3.09
3125 3265 1.135024 CACAACAAGCCACAGTTTGCT 60.135 47.619 0.00 0.00 37.70 3.91
3143 3283 5.424121 AATAGACAAACTGCACAGAACAC 57.576 39.130 4.31 0.00 0.00 3.32
3165 3305 6.422100 GCAATATGAGAGTCTTAAATCTGCGA 59.578 38.462 0.00 0.00 0.00 5.10
3206 3346 5.325239 AGACACTTATTTTTGGAAGGAGGG 58.675 41.667 0.00 0.00 0.00 4.30
3207 3347 6.003950 TGAGACACTTATTTTTGGAAGGAGG 58.996 40.000 0.00 0.00 0.00 4.30
3208 3348 7.229506 AGTTGAGACACTTATTTTTGGAAGGAG 59.770 37.037 0.00 0.00 0.00 3.69
3209 3349 7.060421 AGTTGAGACACTTATTTTTGGAAGGA 58.940 34.615 0.00 0.00 0.00 3.36
3210 3350 7.277174 AGTTGAGACACTTATTTTTGGAAGG 57.723 36.000 0.00 0.00 0.00 3.46
3250 3390 7.437267 GTGTCTCAAGCTTAGTACAACTTTGTA 59.563 37.037 0.00 0.00 42.35 2.41
3251 3391 6.258068 GTGTCTCAAGCTTAGTACAACTTTGT 59.742 38.462 0.00 0.00 44.86 2.83
3252 3392 6.480320 AGTGTCTCAAGCTTAGTACAACTTTG 59.520 38.462 0.00 0.00 0.00 2.77
3253 3393 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
3254 3394 6.163135 AGTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
3255 3395 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
3256 3396 8.535690 AATAAGTGTCTCAAGCTTAGTACAAC 57.464 34.615 0.00 0.00 0.00 3.32
3257 3397 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
3258 3398 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
3259 3399 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
3260 3400 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
3261 3401 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
3262 3402 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
3263 3403 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
3264 3404 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
3265 3405 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
3266 3406 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
3267 3407 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
3268 3408 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3269 3409 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3270 3410 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3271 3411 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3272 3412 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3273 3413 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3274 3414 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3275 3415 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3276 3416 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3277 3417 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3278 3418 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3279 3419 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3280 3420 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3281 3421 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3282 3422 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
3283 3423 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
3284 3424 0.324091 TCAAGTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
3285 3425 1.777941 ATCAAGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3286 3426 3.553904 AGTATCAAGTACTCCCTCCGTC 58.446 50.000 0.00 0.00 39.46 4.79
3287 3427 3.666345 AGTATCAAGTACTCCCTCCGT 57.334 47.619 0.00 0.00 39.46 4.69
3288 3428 3.952323 TCAAGTATCAAGTACTCCCTCCG 59.048 47.826 0.00 0.00 42.83 4.63
3289 3429 5.221541 CCATCAAGTATCAAGTACTCCCTCC 60.222 48.000 0.00 0.00 42.83 4.30
3290 3430 5.598830 TCCATCAAGTATCAAGTACTCCCTC 59.401 44.000 0.00 0.00 42.83 4.30
3291 3431 5.529289 TCCATCAAGTATCAAGTACTCCCT 58.471 41.667 0.00 0.00 42.83 4.20
3292 3432 5.871396 TCCATCAAGTATCAAGTACTCCC 57.129 43.478 0.00 0.00 42.83 4.30
3293 3433 6.226787 CCATCCATCAAGTATCAAGTACTCC 58.773 44.000 0.00 0.00 42.83 3.85
3294 3434 5.698545 GCCATCCATCAAGTATCAAGTACTC 59.301 44.000 0.00 0.00 42.83 2.59
3295 3435 5.367937 AGCCATCCATCAAGTATCAAGTACT 59.632 40.000 0.00 0.00 45.56 2.73
3296 3436 5.615289 AGCCATCCATCAAGTATCAAGTAC 58.385 41.667 0.00 0.00 0.00 2.73
3297 3437 5.894298 AGCCATCCATCAAGTATCAAGTA 57.106 39.130 0.00 0.00 0.00 2.24
3298 3438 4.785346 AGCCATCCATCAAGTATCAAGT 57.215 40.909 0.00 0.00 0.00 3.16
3299 3439 4.885907 ACAAGCCATCCATCAAGTATCAAG 59.114 41.667 0.00 0.00 0.00 3.02
3300 3440 4.858850 ACAAGCCATCCATCAAGTATCAA 58.141 39.130 0.00 0.00 0.00 2.57
3369 3509 5.290493 TGCCCACTGTTATAGGTAGATTG 57.710 43.478 0.00 0.00 0.00 2.67
3375 3515 4.929479 TCATTTTGCCCACTGTTATAGGT 58.071 39.130 0.00 0.00 0.00 3.08
3393 3533 8.771521 TCATCATGAATTGGGTTATTCTCATT 57.228 30.769 0.00 0.00 35.89 2.57
3433 3573 3.565482 GCACTTTGAAGGATGTTGTCAGA 59.435 43.478 0.00 0.00 0.00 3.27
3448 3588 4.082625 TGCATCCATACTTTCTGCACTTTG 60.083 41.667 0.00 0.00 37.88 2.77
3502 3642 4.645762 TCAGGCGATCTATGATAGATGC 57.354 45.455 19.00 19.32 45.16 3.91
3519 3659 1.067635 CCAGGTTTTCCGCATTTCAGG 60.068 52.381 0.00 0.00 46.35 3.86
3575 3717 2.580276 GTCCGGCCGGTCATAACA 59.420 61.111 41.57 20.21 36.47 2.41
3576 3718 1.394266 TAGGTCCGGCCGGTCATAAC 61.394 60.000 41.57 31.01 43.70 1.89
3577 3719 1.076118 TAGGTCCGGCCGGTCATAA 60.076 57.895 41.57 21.87 43.70 1.90
3578 3720 1.829533 GTAGGTCCGGCCGGTCATA 60.830 63.158 41.57 34.29 43.70 2.15
3579 3721 3.152400 GTAGGTCCGGCCGGTCAT 61.152 66.667 41.57 35.44 43.70 3.06
3610 3752 3.134127 GCTAAGCTTGCCCGGTGG 61.134 66.667 9.86 0.00 0.00 4.61
3611 3753 3.134127 GGCTAAGCTTGCCCGGTG 61.134 66.667 22.16 0.00 44.32 4.94
3617 3759 0.961753 AACTTGTGGGCTAAGCTTGC 59.038 50.000 9.86 10.63 0.00 4.01
3618 3760 4.265073 AGATAACTTGTGGGCTAAGCTTG 58.735 43.478 9.86 0.01 0.00 4.01
3619 3761 4.576330 AGATAACTTGTGGGCTAAGCTT 57.424 40.909 3.48 3.48 0.00 3.74
3620 3762 4.576330 AAGATAACTTGTGGGCTAAGCT 57.424 40.909 0.00 0.00 34.80 3.74
3621 3763 5.429130 ACTAAGATAACTTGTGGGCTAAGC 58.571 41.667 0.00 0.00 37.53 3.09
3622 3764 7.923414 AAACTAAGATAACTTGTGGGCTAAG 57.077 36.000 0.00 0.00 37.53 2.18
3623 3765 9.969001 ATAAAACTAAGATAACTTGTGGGCTAA 57.031 29.630 0.00 0.00 37.53 3.09
3624 3766 9.969001 AATAAAACTAAGATAACTTGTGGGCTA 57.031 29.630 0.00 0.00 37.53 3.93
3625 3767 8.879427 AATAAAACTAAGATAACTTGTGGGCT 57.121 30.769 0.00 0.00 37.53 5.19
3626 3768 9.569167 GAAATAAAACTAAGATAACTTGTGGGC 57.431 33.333 0.00 0.00 37.53 5.36
3695 3837 9.284968 GGGCAATAGAATAGTCTTATTGCTTAA 57.715 33.333 27.07 2.92 42.67 1.85
3696 3838 7.602644 CGGGCAATAGAATAGTCTTATTGCTTA 59.397 37.037 27.07 3.47 42.67 3.09
3697 3839 6.428159 CGGGCAATAGAATAGTCTTATTGCTT 59.572 38.462 27.07 5.35 42.67 3.91
3698 3840 5.934625 CGGGCAATAGAATAGTCTTATTGCT 59.065 40.000 27.07 1.03 42.67 3.91
3699 3841 5.122396 CCGGGCAATAGAATAGTCTTATTGC 59.878 44.000 23.90 23.90 42.54 3.56
3700 3842 5.122396 GCCGGGCAATAGAATAGTCTTATTG 59.878 44.000 15.62 7.78 35.12 1.90
3701 3843 5.013183 AGCCGGGCAATAGAATAGTCTTATT 59.987 40.000 23.09 0.00 35.12 1.40
3702 3844 4.532521 AGCCGGGCAATAGAATAGTCTTAT 59.467 41.667 23.09 0.00 35.12 1.73
3703 3845 3.901844 AGCCGGGCAATAGAATAGTCTTA 59.098 43.478 23.09 0.00 35.12 2.10
3704 3846 2.706190 AGCCGGGCAATAGAATAGTCTT 59.294 45.455 23.09 0.00 35.12 3.01
3705 3847 2.300437 GAGCCGGGCAATAGAATAGTCT 59.700 50.000 23.09 0.00 37.95 3.24
3706 3848 2.613223 GGAGCCGGGCAATAGAATAGTC 60.613 54.545 23.09 5.39 0.00 2.59
3707 3849 1.348036 GGAGCCGGGCAATAGAATAGT 59.652 52.381 23.09 0.00 0.00 2.12
3708 3850 1.339151 GGGAGCCGGGCAATAGAATAG 60.339 57.143 23.09 0.00 0.00 1.73
3709 3851 0.690762 GGGAGCCGGGCAATAGAATA 59.309 55.000 23.09 0.00 0.00 1.75
3710 3852 1.352622 TGGGAGCCGGGCAATAGAAT 61.353 55.000 23.09 0.00 0.00 2.40
3711 3853 1.983119 CTGGGAGCCGGGCAATAGAA 61.983 60.000 23.09 0.27 0.00 2.10
3712 3854 2.366301 TGGGAGCCGGGCAATAGA 60.366 61.111 23.09 0.00 0.00 1.98
3713 3855 2.111878 CTGGGAGCCGGGCAATAG 59.888 66.667 23.09 9.80 0.00 1.73
3714 3856 2.366301 TCTGGGAGCCGGGCAATA 60.366 61.111 23.09 3.43 0.00 1.90
3715 3857 3.801997 CTCTGGGAGCCGGGCAAT 61.802 66.667 23.09 0.00 0.00 3.56
3725 3867 2.121832 TTTCCGGCTCCTCTGGGA 59.878 61.111 0.00 0.00 41.78 4.37
3726 3868 2.269241 GTTTCCGGCTCCTCTGGG 59.731 66.667 0.00 0.00 41.78 4.45
3727 3869 2.269241 GGTTTCCGGCTCCTCTGG 59.731 66.667 0.00 0.00 42.90 3.86
3728 3870 0.976073 TAGGGTTTCCGGCTCCTCTG 60.976 60.000 0.00 0.00 38.33 3.35
3729 3871 0.252558 TTAGGGTTTCCGGCTCCTCT 60.253 55.000 0.00 0.00 38.33 3.69
3730 3872 0.616891 TTTAGGGTTTCCGGCTCCTC 59.383 55.000 0.00 0.00 38.33 3.71
3731 3873 0.327259 GTTTAGGGTTTCCGGCTCCT 59.673 55.000 0.00 3.11 38.33 3.69
3732 3874 0.679002 GGTTTAGGGTTTCCGGCTCC 60.679 60.000 0.00 0.00 38.33 4.70
3733 3875 0.679002 GGGTTTAGGGTTTCCGGCTC 60.679 60.000 0.00 0.00 38.33 4.70
3734 3876 1.138228 AGGGTTTAGGGTTTCCGGCT 61.138 55.000 0.00 0.00 38.33 5.52
3735 3877 0.620030 TAGGGTTTAGGGTTTCCGGC 59.380 55.000 0.00 0.00 38.33 6.13
3736 3878 1.407851 GCTAGGGTTTAGGGTTTCCGG 60.408 57.143 0.00 0.00 38.33 5.14
3737 3879 1.407851 GGCTAGGGTTTAGGGTTTCCG 60.408 57.143 0.00 0.00 38.33 4.30
3738 3880 1.407851 CGGCTAGGGTTTAGGGTTTCC 60.408 57.143 0.00 0.00 0.00 3.13
3739 3881 2.015588 GCGGCTAGGGTTTAGGGTTTC 61.016 57.143 0.00 0.00 0.00 2.78
3740 3882 0.034767 GCGGCTAGGGTTTAGGGTTT 60.035 55.000 0.00 0.00 0.00 3.27
3741 3883 1.605992 GCGGCTAGGGTTTAGGGTT 59.394 57.895 0.00 0.00 0.00 4.11
3742 3884 2.372890 GGCGGCTAGGGTTTAGGGT 61.373 63.158 0.00 0.00 0.00 4.34
3743 3885 2.041206 GAGGCGGCTAGGGTTTAGGG 62.041 65.000 13.24 0.00 0.00 3.53
3744 3886 1.049289 AGAGGCGGCTAGGGTTTAGG 61.049 60.000 13.24 0.00 0.00 2.69
3745 3887 0.831307 AAGAGGCGGCTAGGGTTTAG 59.169 55.000 13.24 0.00 0.00 1.85
3746 3888 0.539986 CAAGAGGCGGCTAGGGTTTA 59.460 55.000 13.24 0.00 0.00 2.01
3747 3889 1.299976 CAAGAGGCGGCTAGGGTTT 59.700 57.895 13.24 0.00 0.00 3.27
3748 3890 2.990479 CAAGAGGCGGCTAGGGTT 59.010 61.111 13.24 0.00 0.00 4.11
3749 3891 3.787001 GCAAGAGGCGGCTAGGGT 61.787 66.667 13.24 0.00 0.00 4.34
3750 3892 4.554036 GGCAAGAGGCGGCTAGGG 62.554 72.222 13.24 5.06 46.16 3.53
3751 3893 2.932130 GAAGGCAAGAGGCGGCTAGG 62.932 65.000 13.24 5.48 46.16 3.02
3752 3894 1.522580 GAAGGCAAGAGGCGGCTAG 60.523 63.158 13.24 6.31 46.16 3.42
3753 3895 2.584608 GAAGGCAAGAGGCGGCTA 59.415 61.111 13.24 0.00 46.16 3.93
3754 3896 4.767255 CGAAGGCAAGAGGCGGCT 62.767 66.667 13.09 13.09 46.16 5.52
3776 3918 4.817063 CTTGCGATGGTTGCGGCG 62.817 66.667 0.51 0.51 34.24 6.46
3777 3919 4.481112 CCTTGCGATGGTTGCGGC 62.481 66.667 0.00 0.00 34.24 6.53
3778 3920 2.745884 TCCTTGCGATGGTTGCGG 60.746 61.111 0.00 0.00 34.24 5.69
3779 3921 2.480555 GTCCTTGCGATGGTTGCG 59.519 61.111 0.00 0.00 34.24 4.85
3780 3922 2.480555 CGTCCTTGCGATGGTTGC 59.519 61.111 0.00 0.00 0.00 4.17
3781 3923 3.177600 CCGTCCTTGCGATGGTTG 58.822 61.111 0.00 0.00 42.12 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.