Multiple sequence alignment - TraesCS1D01G056400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G056400 chr1D 100.000 3253 0 0 1 3253 37430851 37434103 0.000000e+00 6008
1 TraesCS1D01G056400 chr1D 95.363 1596 74 0 1 1596 36617527 36615932 0.000000e+00 2538
2 TraesCS1D01G056400 chr1D 86.717 1596 211 1 1 1596 36623938 36622344 0.000000e+00 1772
3 TraesCS1D01G056400 chr1D 88.382 241 24 4 2070 2306 36615943 36615703 1.480000e-73 287
4 TraesCS1D01G056400 chr1D 86.822 258 29 5 2070 2323 36622355 36622099 1.910000e-72 283
5 TraesCS1D01G056400 chr1A 93.609 1596 102 0 1 1596 36187652 36186057 0.000000e+00 2383
6 TraesCS1D01G056400 chr1A 93.170 1596 109 0 1 1596 36174150 36172555 0.000000e+00 2344
7 TraesCS1D01G056400 chr1A 90.801 1598 142 5 1 1596 36613855 36615449 0.000000e+00 2132
8 TraesCS1D01G056400 chr1A 98.059 1185 22 1 2070 3253 36615438 36616622 0.000000e+00 2060
9 TraesCS1D01G056400 chr1A 87.984 258 26 5 2070 2323 36607096 36607352 1.900000e-77 300
10 TraesCS1D01G056400 chr1B 88.854 1597 173 3 1 1596 56619857 56618265 0.000000e+00 1958
11 TraesCS1D01G056400 chr1B 88.596 1596 179 1 1 1596 56492948 56491356 0.000000e+00 1936
12 TraesCS1D01G056400 chr1B 87.664 1597 189 7 1 1596 56501129 56499540 0.000000e+00 1851
13 TraesCS1D01G056400 chr1B 87.101 1597 204 2 1 1596 57137717 57139312 0.000000e+00 1807
14 TraesCS1D01G056400 chr1B 89.577 307 31 1 2070 2375 57132484 57132790 3.940000e-104 388
15 TraesCS1D01G056400 chr1B 89.243 251 23 3 3006 3253 57019673 57019922 8.760000e-81 311
16 TraesCS1D01G056400 chr1B 86.381 257 31 4 2070 2323 56491367 56491112 8.890000e-71 278
17 TraesCS1D01G056400 chr2A 85.394 938 105 18 2072 2997 717003156 717004073 0.000000e+00 944
18 TraesCS1D01G056400 chr7D 98.316 475 7 1 1597 2070 1526121 1526595 0.000000e+00 832
19 TraesCS1D01G056400 chr7D 94.549 477 25 1 1597 2073 522868060 522867585 0.000000e+00 736
20 TraesCS1D01G056400 chr2D 94.969 477 23 1 1597 2073 462486631 462487106 0.000000e+00 747
21 TraesCS1D01G056400 chr2D 94.781 479 24 1 1596 2074 204265791 204265314 0.000000e+00 745
22 TraesCS1D01G056400 chr2D 93.483 491 29 3 1591 2080 633327853 633327365 0.000000e+00 726
23 TraesCS1D01G056400 chr2D 84.350 492 52 13 2072 2554 579329733 579330208 2.960000e-125 459
24 TraesCS1D01G056400 chr5D 94.606 482 25 1 1597 2078 486229494 486229014 0.000000e+00 745
25 TraesCS1D01G056400 chr3D 94.340 477 26 1 1597 2073 559476880 559476405 0.000000e+00 730
26 TraesCS1D01G056400 chr3D 93.483 491 29 3 1590 2079 93611548 93612036 0.000000e+00 726
27 TraesCS1D01G056400 chr4D 94.142 478 27 1 1597 2074 464310152 464309676 0.000000e+00 726
28 TraesCS1D01G056400 chr2B 85.551 699 74 12 2309 2997 696661621 696662302 0.000000e+00 706
29 TraesCS1D01G056400 chr2B 87.251 251 27 3 2072 2318 696656641 696656890 6.870000e-72 281


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G056400 chr1D 37430851 37434103 3252 False 6008.0 6008 100.0000 1 3253 1 chr1D.!!$F1 3252
1 TraesCS1D01G056400 chr1D 36615703 36617527 1824 True 1412.5 2538 91.8725 1 2306 2 chr1D.!!$R1 2305
2 TraesCS1D01G056400 chr1D 36622099 36623938 1839 True 1027.5 1772 86.7695 1 2323 2 chr1D.!!$R2 2322
3 TraesCS1D01G056400 chr1A 36186057 36187652 1595 True 2383.0 2383 93.6090 1 1596 1 chr1A.!!$R2 1595
4 TraesCS1D01G056400 chr1A 36172555 36174150 1595 True 2344.0 2344 93.1700 1 1596 1 chr1A.!!$R1 1595
5 TraesCS1D01G056400 chr1A 36613855 36616622 2767 False 2096.0 2132 94.4300 1 3253 2 chr1A.!!$F2 3252
6 TraesCS1D01G056400 chr1B 56618265 56619857 1592 True 1958.0 1958 88.8540 1 1596 1 chr1B.!!$R2 1595
7 TraesCS1D01G056400 chr1B 56499540 56501129 1589 True 1851.0 1851 87.6640 1 1596 1 chr1B.!!$R1 1595
8 TraesCS1D01G056400 chr1B 57137717 57139312 1595 False 1807.0 1807 87.1010 1 1596 1 chr1B.!!$F3 1595
9 TraesCS1D01G056400 chr1B 56491112 56492948 1836 True 1107.0 1936 87.4885 1 2323 2 chr1B.!!$R3 2322
10 TraesCS1D01G056400 chr2A 717003156 717004073 917 False 944.0 944 85.3940 2072 2997 1 chr2A.!!$F1 925
11 TraesCS1D01G056400 chr2B 696661621 696662302 681 False 706.0 706 85.5510 2309 2997 1 chr2B.!!$F2 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 819 1.537562 CGGTGGTATTCTTCGGCCTAC 60.538 57.143 0.0 0.0 0.00 3.18 F
1601 1605 2.231478 TGTTGTTGGAAAAAGGCAACGA 59.769 40.909 0.0 0.0 41.38 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 1633 0.033699 AGCATTTGGAGAAGGGCCTC 60.034 55.0 6.46 0.0 0.00 4.70 R
2798 2812 0.390340 TCGGCATGAGCACTGAGAAC 60.390 55.0 0.00 0.0 44.61 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 7.142306 ACATATAGCTCAATCATTGATGCAC 57.858 36.000 18.32 4.04 39.30 4.57
176 177 4.278419 GCAGATGGTTAACAAAGGTGTTCT 59.722 41.667 8.10 0.00 45.00 3.01
272 273 6.594788 ATTGCTTAGAGAAATGAAAAGCCA 57.405 33.333 3.19 0.00 41.41 4.75
415 419 9.569167 CAGATATCGTATCATACCGTATTTTGT 57.431 33.333 0.00 0.00 0.00 2.83
702 706 3.521126 AGATGACTGCCTTGGAAGTACAT 59.479 43.478 0.00 6.40 0.00 2.29
806 810 5.496556 TGAAATGATGAACGGTGGTATTCT 58.503 37.500 0.00 0.00 0.00 2.40
815 819 1.537562 CGGTGGTATTCTTCGGCCTAC 60.538 57.143 0.00 0.00 0.00 3.18
1577 1581 4.812626 CCGTCTCATCAATGACATCATCAA 59.187 41.667 0.00 0.00 41.93 2.57
1594 1598 8.614346 ACATCATCAAATTGTTGTTGGAAAAAG 58.386 29.630 15.40 0.00 35.83 2.27
1595 1599 7.551035 TCATCAAATTGTTGTTGGAAAAAGG 57.449 32.000 4.24 0.00 35.83 3.11
1596 1600 5.809719 TCAAATTGTTGTTGGAAAAAGGC 57.190 34.783 0.00 0.00 36.07 4.35
1597 1601 5.248640 TCAAATTGTTGTTGGAAAAAGGCA 58.751 33.333 0.00 0.00 36.07 4.75
1598 1602 5.707298 TCAAATTGTTGTTGGAAAAAGGCAA 59.293 32.000 0.00 0.00 36.07 4.52
1599 1603 5.559427 AATTGTTGTTGGAAAAAGGCAAC 57.441 34.783 0.00 0.00 39.62 4.17
1600 1604 2.611518 TGTTGTTGGAAAAAGGCAACG 58.388 42.857 0.00 0.00 41.38 4.10
1601 1605 2.231478 TGTTGTTGGAAAAAGGCAACGA 59.769 40.909 0.00 0.00 41.38 3.85
1602 1606 3.254892 GTTGTTGGAAAAAGGCAACGAA 58.745 40.909 0.00 0.00 46.39 3.85
1603 1607 3.594603 TGTTGGAAAAAGGCAACGAAA 57.405 38.095 0.00 0.00 46.39 3.46
1604 1608 3.926616 TGTTGGAAAAAGGCAACGAAAA 58.073 36.364 0.00 0.00 46.39 2.29
1605 1609 4.315803 TGTTGGAAAAAGGCAACGAAAAA 58.684 34.783 0.00 0.00 46.39 1.94
1628 1632 4.842139 ATAGCGCGCTACAAAATATAGC 57.158 40.909 40.42 2.19 41.43 2.97
1635 1639 2.742589 GCTACAAAATATAGCGAGGCCC 59.257 50.000 0.00 0.00 36.02 5.80
1636 1640 3.557264 GCTACAAAATATAGCGAGGCCCT 60.557 47.826 0.00 0.00 36.02 5.19
1637 1641 3.577805 ACAAAATATAGCGAGGCCCTT 57.422 42.857 0.00 0.00 0.00 3.95
1638 1642 3.477530 ACAAAATATAGCGAGGCCCTTC 58.522 45.455 0.00 0.00 0.00 3.46
1639 1643 3.136626 ACAAAATATAGCGAGGCCCTTCT 59.863 43.478 0.00 0.00 0.00 2.85
1640 1644 3.686916 AAATATAGCGAGGCCCTTCTC 57.313 47.619 0.00 0.00 0.00 2.87
1641 1645 1.562783 ATATAGCGAGGCCCTTCTCC 58.437 55.000 0.00 0.00 0.00 3.71
1642 1646 0.187606 TATAGCGAGGCCCTTCTCCA 59.812 55.000 0.00 0.00 0.00 3.86
1643 1647 0.691078 ATAGCGAGGCCCTTCTCCAA 60.691 55.000 0.00 0.00 0.00 3.53
1644 1648 0.907704 TAGCGAGGCCCTTCTCCAAA 60.908 55.000 0.00 0.00 0.00 3.28
1645 1649 1.077429 GCGAGGCCCTTCTCCAAAT 60.077 57.895 0.00 0.00 0.00 2.32
1646 1650 1.379642 GCGAGGCCCTTCTCCAAATG 61.380 60.000 0.00 0.00 0.00 2.32
1647 1651 1.379642 CGAGGCCCTTCTCCAAATGC 61.380 60.000 0.00 0.00 0.00 3.56
1648 1652 0.033699 GAGGCCCTTCTCCAAATGCT 60.034 55.000 0.00 0.00 0.00 3.79
1649 1653 1.212935 GAGGCCCTTCTCCAAATGCTA 59.787 52.381 0.00 0.00 0.00 3.49
1650 1654 1.064389 AGGCCCTTCTCCAAATGCTAC 60.064 52.381 0.00 0.00 0.00 3.58
1651 1655 1.340991 GGCCCTTCTCCAAATGCTACA 60.341 52.381 0.00 0.00 0.00 2.74
1652 1656 1.745653 GCCCTTCTCCAAATGCTACAC 59.254 52.381 0.00 0.00 0.00 2.90
1653 1657 2.879756 GCCCTTCTCCAAATGCTACACA 60.880 50.000 0.00 0.00 0.00 3.72
1654 1658 3.420893 CCCTTCTCCAAATGCTACACAA 58.579 45.455 0.00 0.00 0.00 3.33
1655 1659 3.441572 CCCTTCTCCAAATGCTACACAAG 59.558 47.826 0.00 0.00 0.00 3.16
1656 1660 4.074970 CCTTCTCCAAATGCTACACAAGT 58.925 43.478 0.00 0.00 0.00 3.16
1657 1661 4.520492 CCTTCTCCAAATGCTACACAAGTT 59.480 41.667 0.00 0.00 0.00 2.66
1658 1662 5.705441 CCTTCTCCAAATGCTACACAAGTTA 59.295 40.000 0.00 0.00 0.00 2.24
1659 1663 6.375455 CCTTCTCCAAATGCTACACAAGTTAT 59.625 38.462 0.00 0.00 0.00 1.89
1660 1664 7.552687 CCTTCTCCAAATGCTACACAAGTTATA 59.447 37.037 0.00 0.00 0.00 0.98
1661 1665 8.492673 TTCTCCAAATGCTACACAAGTTATAG 57.507 34.615 0.00 0.00 0.00 1.31
1662 1666 6.538742 TCTCCAAATGCTACACAAGTTATAGC 59.461 38.462 6.38 6.38 41.44 2.97
1663 1667 5.293324 TCCAAATGCTACACAAGTTATAGCG 59.707 40.000 8.10 0.00 43.53 4.26
1664 1668 4.795970 AATGCTACACAAGTTATAGCGC 57.204 40.909 0.00 0.00 43.53 5.92
1665 1669 2.190161 TGCTACACAAGTTATAGCGCG 58.810 47.619 0.00 0.00 43.53 6.86
1666 1670 1.071436 GCTACACAAGTTATAGCGCGC 60.071 52.381 26.66 26.66 32.61 6.86
1667 1671 2.460918 CTACACAAGTTATAGCGCGCT 58.539 47.619 38.01 38.01 0.00 5.92
1668 1672 2.572191 ACACAAGTTATAGCGCGCTA 57.428 45.000 39.72 39.72 0.00 4.26
1669 1673 2.883574 ACACAAGTTATAGCGCGCTAA 58.116 42.857 40.90 27.16 31.73 3.09
1670 1674 3.454375 ACACAAGTTATAGCGCGCTAAT 58.546 40.909 40.90 29.53 31.73 1.73
1671 1675 4.613944 ACACAAGTTATAGCGCGCTAATA 58.386 39.130 40.90 28.70 31.73 0.98
1672 1676 4.680110 ACACAAGTTATAGCGCGCTAATAG 59.320 41.667 40.90 27.66 31.73 1.73
1673 1677 3.673809 ACAAGTTATAGCGCGCTAATAGC 59.326 43.478 40.90 30.23 38.02 2.97
1674 1678 3.570926 AGTTATAGCGCGCTAATAGCA 57.429 42.857 40.90 23.00 42.58 3.49
1675 1679 4.111375 AGTTATAGCGCGCTAATAGCAT 57.889 40.909 40.90 27.73 42.58 3.79
1676 1680 3.859961 AGTTATAGCGCGCTAATAGCATG 59.140 43.478 40.90 4.80 42.58 4.06
1677 1681 1.002366 ATAGCGCGCTAATAGCATGC 58.998 50.000 40.90 10.51 42.58 4.06
1678 1682 1.301244 AGCGCGCTAATAGCATGCT 60.301 52.632 35.79 25.99 43.60 3.79
1679 1683 0.038251 AGCGCGCTAATAGCATGCTA 60.038 50.000 35.79 28.72 45.58 3.49
1680 1684 1.002366 GCGCGCTAATAGCATGCTAT 58.998 50.000 30.43 30.43 42.58 2.97
1681 1685 2.159240 AGCGCGCTAATAGCATGCTATA 60.159 45.455 34.51 22.41 45.58 1.31
1682 1686 2.797156 GCGCGCTAATAGCATGCTATAT 59.203 45.455 34.51 25.87 42.58 0.86
1683 1687 3.246226 GCGCGCTAATAGCATGCTATATT 59.754 43.478 34.51 25.71 42.58 1.28
1684 1688 4.260375 GCGCGCTAATAGCATGCTATATTT 60.260 41.667 34.51 24.18 42.58 1.40
1685 1689 5.427082 CGCGCTAATAGCATGCTATATTTC 58.573 41.667 34.51 22.92 42.58 2.17
1686 1690 5.427082 GCGCTAATAGCATGCTATATTTCG 58.573 41.667 34.51 30.63 42.58 3.46
1687 1691 5.232202 GCGCTAATAGCATGCTATATTTCGA 59.768 40.000 34.51 12.58 42.58 3.71
1688 1692 6.237835 GCGCTAATAGCATGCTATATTTCGAA 60.238 38.462 34.51 11.84 42.58 3.71
1689 1693 7.674008 GCGCTAATAGCATGCTATATTTCGAAA 60.674 37.037 34.51 13.91 42.58 3.46
1690 1694 8.331022 CGCTAATAGCATGCTATATTTCGAAAT 58.669 33.333 34.51 25.48 42.58 2.17
1694 1698 6.992063 AGCATGCTATATTTCGAAATAGGG 57.008 37.500 28.80 23.79 34.62 3.53
1695 1699 6.476378 AGCATGCTATATTTCGAAATAGGGT 58.524 36.000 28.80 18.26 34.62 4.34
1696 1700 6.942576 AGCATGCTATATTTCGAAATAGGGTT 59.057 34.615 28.80 17.96 34.62 4.11
1697 1701 7.448469 AGCATGCTATATTTCGAAATAGGGTTT 59.552 33.333 28.80 17.66 34.62 3.27
1698 1702 7.538678 GCATGCTATATTTCGAAATAGGGTTTG 59.461 37.037 28.80 23.09 34.62 2.93
1699 1703 6.966021 TGCTATATTTCGAAATAGGGTTTGC 58.034 36.000 28.80 23.70 34.62 3.68
1700 1704 6.544197 TGCTATATTTCGAAATAGGGTTTGCA 59.456 34.615 28.80 25.37 34.62 4.08
1701 1705 7.067615 TGCTATATTTCGAAATAGGGTTTGCAA 59.932 33.333 28.80 15.15 34.62 4.08
1702 1706 7.918562 GCTATATTTCGAAATAGGGTTTGCAAA 59.081 33.333 28.80 8.05 34.62 3.68
1703 1707 9.796120 CTATATTTCGAAATAGGGTTTGCAAAA 57.204 29.630 28.80 9.54 34.62 2.44
1762 1766 9.582648 AAGTAACTAAATTTTTCCTAGGAGCAA 57.417 29.630 12.26 9.26 0.00 3.91
1763 1767 9.232473 AGTAACTAAATTTTTCCTAGGAGCAAG 57.768 33.333 12.26 6.68 0.00 4.01
1764 1768 6.516739 ACTAAATTTTTCCTAGGAGCAAGC 57.483 37.500 12.26 0.00 0.00 4.01
1765 1769 6.010219 ACTAAATTTTTCCTAGGAGCAAGCA 58.990 36.000 12.26 0.00 0.00 3.91
1766 1770 5.806654 AAATTTTTCCTAGGAGCAAGCAA 57.193 34.783 12.26 0.00 0.00 3.91
1767 1771 6.364568 AAATTTTTCCTAGGAGCAAGCAAT 57.635 33.333 12.26 0.00 0.00 3.56
1768 1772 7.480760 AAATTTTTCCTAGGAGCAAGCAATA 57.519 32.000 12.26 0.00 0.00 1.90
1769 1773 7.666063 AATTTTTCCTAGGAGCAAGCAATAT 57.334 32.000 12.26 0.49 0.00 1.28
1770 1774 8.766994 AATTTTTCCTAGGAGCAAGCAATATA 57.233 30.769 12.26 0.00 0.00 0.86
1771 1775 8.946797 ATTTTTCCTAGGAGCAAGCAATATAT 57.053 30.769 12.26 0.00 0.00 0.86
1772 1776 7.750229 TTTTCCTAGGAGCAAGCAATATATG 57.250 36.000 12.26 0.00 0.00 1.78
1788 1792 7.414222 CAATATATGCATAAGGGCCAAATCT 57.586 36.000 11.13 0.00 0.00 2.40
1789 1793 8.523915 CAATATATGCATAAGGGCCAAATCTA 57.476 34.615 11.13 0.00 0.00 1.98
1790 1794 8.627403 CAATATATGCATAAGGGCCAAATCTAG 58.373 37.037 11.13 0.00 0.00 2.43
1791 1795 3.228188 TGCATAAGGGCCAAATCTAGG 57.772 47.619 6.18 0.00 0.00 3.02
1792 1796 2.782925 TGCATAAGGGCCAAATCTAGGA 59.217 45.455 6.18 0.00 0.00 2.94
1793 1797 3.149981 GCATAAGGGCCAAATCTAGGAC 58.850 50.000 6.18 0.00 0.00 3.85
1794 1798 3.435026 GCATAAGGGCCAAATCTAGGACA 60.435 47.826 6.18 0.00 35.15 4.02
1795 1799 4.751028 GCATAAGGGCCAAATCTAGGACAT 60.751 45.833 6.18 0.00 35.15 3.06
1796 1800 5.514834 GCATAAGGGCCAAATCTAGGACATA 60.515 44.000 6.18 0.00 35.15 2.29
1797 1801 6.542821 CATAAGGGCCAAATCTAGGACATAA 58.457 40.000 6.18 0.00 35.15 1.90
1798 1802 5.466127 AAGGGCCAAATCTAGGACATAAA 57.534 39.130 6.18 0.00 35.15 1.40
1799 1803 5.466127 AGGGCCAAATCTAGGACATAAAA 57.534 39.130 6.18 0.00 35.15 1.52
1800 1804 5.837829 AGGGCCAAATCTAGGACATAAAAA 58.162 37.500 6.18 0.00 35.15 1.94
1801 1805 6.443832 AGGGCCAAATCTAGGACATAAAAAT 58.556 36.000 6.18 0.00 35.15 1.82
1802 1806 6.902974 AGGGCCAAATCTAGGACATAAAAATT 59.097 34.615 6.18 0.00 35.15 1.82
1803 1807 6.986231 GGGCCAAATCTAGGACATAAAAATTG 59.014 38.462 4.39 0.00 35.15 2.32
1804 1808 7.364673 GGGCCAAATCTAGGACATAAAAATTGT 60.365 37.037 4.39 0.00 35.15 2.71
1805 1809 8.691797 GGCCAAATCTAGGACATAAAAATTGTA 58.308 33.333 0.00 0.00 33.02 2.41
1816 1820 9.959749 GGACATAAAAATTGTAAGTCTCAAACA 57.040 29.630 0.00 0.00 0.00 2.83
1822 1826 9.921637 AAAAATTGTAAGTCTCAAACAGTTTCA 57.078 25.926 0.00 0.00 33.57 2.69
1823 1827 9.921637 AAAATTGTAAGTCTCAAACAGTTTCAA 57.078 25.926 0.00 0.00 33.57 2.69
1824 1828 9.573133 AAATTGTAAGTCTCAAACAGTTTCAAG 57.427 29.630 0.00 0.00 30.19 3.02
1825 1829 7.915293 TTGTAAGTCTCAAACAGTTTCAAGA 57.085 32.000 0.00 0.00 0.00 3.02
1826 1830 8.506168 TTGTAAGTCTCAAACAGTTTCAAGAT 57.494 30.769 9.76 0.88 0.00 2.40
1827 1831 9.607988 TTGTAAGTCTCAAACAGTTTCAAGATA 57.392 29.630 9.76 0.16 0.00 1.98
1828 1832 9.607988 TGTAAGTCTCAAACAGTTTCAAGATAA 57.392 29.630 9.76 0.00 0.00 1.75
1836 1840 9.787532 TCAAACAGTTTCAAGATAAAAAGAGTG 57.212 29.630 0.00 0.00 0.00 3.51
1837 1841 9.787532 CAAACAGTTTCAAGATAAAAAGAGTGA 57.212 29.630 0.00 0.00 0.00 3.41
1839 1843 8.964476 ACAGTTTCAAGATAAAAAGAGTGAGA 57.036 30.769 0.00 0.00 0.00 3.27
1840 1844 9.396022 ACAGTTTCAAGATAAAAAGAGTGAGAA 57.604 29.630 0.00 0.00 0.00 2.87
1843 1847 9.670719 GTTTCAAGATAAAAAGAGTGAGAAAGG 57.329 33.333 0.00 0.00 0.00 3.11
1844 1848 8.980481 TTCAAGATAAAAAGAGTGAGAAAGGT 57.020 30.769 0.00 0.00 0.00 3.50
1846 1850 9.712305 TCAAGATAAAAAGAGTGAGAAAGGTAG 57.288 33.333 0.00 0.00 0.00 3.18
1847 1851 9.495572 CAAGATAAAAAGAGTGAGAAAGGTAGT 57.504 33.333 0.00 0.00 0.00 2.73
1848 1852 9.495572 AAGATAAAAAGAGTGAGAAAGGTAGTG 57.504 33.333 0.00 0.00 0.00 2.74
1849 1853 8.097662 AGATAAAAAGAGTGAGAAAGGTAGTGG 58.902 37.037 0.00 0.00 0.00 4.00
1850 1854 5.632034 AAAAGAGTGAGAAAGGTAGTGGT 57.368 39.130 0.00 0.00 0.00 4.16
1851 1855 4.875561 AAGAGTGAGAAAGGTAGTGGTC 57.124 45.455 0.00 0.00 0.00 4.02
1852 1856 2.820787 AGAGTGAGAAAGGTAGTGGTCG 59.179 50.000 0.00 0.00 0.00 4.79
1853 1857 2.557490 GAGTGAGAAAGGTAGTGGTCGT 59.443 50.000 0.00 0.00 0.00 4.34
1854 1858 2.296471 AGTGAGAAAGGTAGTGGTCGTG 59.704 50.000 0.00 0.00 0.00 4.35
1855 1859 1.616865 TGAGAAAGGTAGTGGTCGTGG 59.383 52.381 0.00 0.00 0.00 4.94
1856 1860 0.974383 AGAAAGGTAGTGGTCGTGGG 59.026 55.000 0.00 0.00 0.00 4.61
1857 1861 0.683412 GAAAGGTAGTGGTCGTGGGT 59.317 55.000 0.00 0.00 0.00 4.51
1858 1862 1.071228 GAAAGGTAGTGGTCGTGGGTT 59.929 52.381 0.00 0.00 0.00 4.11
1859 1863 0.395312 AAGGTAGTGGTCGTGGGTTG 59.605 55.000 0.00 0.00 0.00 3.77
1860 1864 1.004200 GGTAGTGGTCGTGGGTTGG 60.004 63.158 0.00 0.00 0.00 3.77
1861 1865 1.750297 GTAGTGGTCGTGGGTTGGT 59.250 57.895 0.00 0.00 0.00 3.67
1862 1866 0.107268 GTAGTGGTCGTGGGTTGGTT 59.893 55.000 0.00 0.00 0.00 3.67
1863 1867 0.838608 TAGTGGTCGTGGGTTGGTTT 59.161 50.000 0.00 0.00 0.00 3.27
1864 1868 0.033894 AGTGGTCGTGGGTTGGTTTT 60.034 50.000 0.00 0.00 0.00 2.43
1865 1869 0.101579 GTGGTCGTGGGTTGGTTTTG 59.898 55.000 0.00 0.00 0.00 2.44
1866 1870 1.038130 TGGTCGTGGGTTGGTTTTGG 61.038 55.000 0.00 0.00 0.00 3.28
1867 1871 1.066752 GTCGTGGGTTGGTTTTGGC 59.933 57.895 0.00 0.00 0.00 4.52
1868 1872 2.128507 TCGTGGGTTGGTTTTGGCC 61.129 57.895 0.00 0.00 0.00 5.36
1869 1873 2.131067 CGTGGGTTGGTTTTGGCCT 61.131 57.895 3.32 0.00 0.00 5.19
1870 1874 1.445518 GTGGGTTGGTTTTGGCCTG 59.554 57.895 3.32 0.00 0.00 4.85
1871 1875 2.425592 GGGTTGGTTTTGGCCTGC 59.574 61.111 3.32 0.00 0.00 4.85
1872 1876 2.140138 GGGTTGGTTTTGGCCTGCT 61.140 57.895 3.32 0.00 0.00 4.24
1873 1877 1.069596 GGTTGGTTTTGGCCTGCTG 59.930 57.895 3.32 0.00 0.00 4.41
1874 1878 1.069596 GTTGGTTTTGGCCTGCTGG 59.930 57.895 3.32 5.03 0.00 4.85
1875 1879 2.139484 TTGGTTTTGGCCTGCTGGG 61.139 57.895 12.06 1.66 38.36 4.45
1894 1898 4.954970 CGGCTGGGCTGTGGTTGT 62.955 66.667 0.00 0.00 0.00 3.32
1895 1899 2.521708 GGCTGGGCTGTGGTTGTT 60.522 61.111 0.00 0.00 0.00 2.83
1896 1900 2.133641 GGCTGGGCTGTGGTTGTTT 61.134 57.895 0.00 0.00 0.00 2.83
1897 1901 1.685355 GGCTGGGCTGTGGTTGTTTT 61.685 55.000 0.00 0.00 0.00 2.43
1898 1902 1.036707 GCTGGGCTGTGGTTGTTTTA 58.963 50.000 0.00 0.00 0.00 1.52
1899 1903 1.000274 GCTGGGCTGTGGTTGTTTTAG 60.000 52.381 0.00 0.00 0.00 1.85
1900 1904 2.306847 CTGGGCTGTGGTTGTTTTAGT 58.693 47.619 0.00 0.00 0.00 2.24
1901 1905 2.693074 CTGGGCTGTGGTTGTTTTAGTT 59.307 45.455 0.00 0.00 0.00 2.24
1902 1906 3.100671 TGGGCTGTGGTTGTTTTAGTTT 58.899 40.909 0.00 0.00 0.00 2.66
1903 1907 3.515901 TGGGCTGTGGTTGTTTTAGTTTT 59.484 39.130 0.00 0.00 0.00 2.43
1904 1908 3.868661 GGGCTGTGGTTGTTTTAGTTTTG 59.131 43.478 0.00 0.00 0.00 2.44
1905 1909 3.308595 GGCTGTGGTTGTTTTAGTTTTGC 59.691 43.478 0.00 0.00 0.00 3.68
1906 1910 3.929610 GCTGTGGTTGTTTTAGTTTTGCA 59.070 39.130 0.00 0.00 0.00 4.08
1907 1911 4.570369 GCTGTGGTTGTTTTAGTTTTGCAT 59.430 37.500 0.00 0.00 0.00 3.96
1908 1912 5.502220 GCTGTGGTTGTTTTAGTTTTGCATG 60.502 40.000 0.00 0.00 0.00 4.06
1909 1913 4.872691 TGTGGTTGTTTTAGTTTTGCATGG 59.127 37.500 0.00 0.00 0.00 3.66
1910 1914 3.873952 TGGTTGTTTTAGTTTTGCATGGC 59.126 39.130 0.00 0.00 0.00 4.40
1911 1915 3.249799 GGTTGTTTTAGTTTTGCATGGCC 59.750 43.478 0.00 0.00 0.00 5.36
1912 1916 4.126437 GTTGTTTTAGTTTTGCATGGCCT 58.874 39.130 3.32 0.00 0.00 5.19
1913 1917 3.726607 TGTTTTAGTTTTGCATGGCCTG 58.273 40.909 3.32 0.34 0.00 4.85
1924 1928 1.696988 CATGGCCTGCACGTTAAAAC 58.303 50.000 3.32 0.00 0.00 2.43
1952 1956 3.548216 GCTACAACGTTATAGCGTGTG 57.452 47.619 21.62 16.16 45.00 3.82
1953 1957 2.919229 GCTACAACGTTATAGCGTGTGT 59.081 45.455 21.62 22.53 45.00 3.72
1954 1958 4.097714 GCTACAACGTTATAGCGTGTGTA 58.902 43.478 21.62 20.12 45.00 2.90
1955 1959 4.203764 GCTACAACGTTATAGCGTGTGTAG 59.796 45.833 31.25 31.25 45.46 2.74
1956 1960 2.919229 ACAACGTTATAGCGTGTGTAGC 59.081 45.455 15.60 0.00 45.00 3.58
1957 1961 1.818850 ACGTTATAGCGTGTGTAGCG 58.181 50.000 14.14 0.00 43.99 4.26
1964 1968 3.688136 CGTGTGTAGCGCGCTAAT 58.312 55.556 39.73 19.77 44.35 1.73
1965 1969 1.995991 CGTGTGTAGCGCGCTAATT 59.004 52.632 39.73 19.37 44.35 1.40
1966 1970 1.193644 CGTGTGTAGCGCGCTAATTA 58.806 50.000 39.73 26.04 44.35 1.40
1967 1971 1.784856 CGTGTGTAGCGCGCTAATTAT 59.215 47.619 39.73 18.14 44.35 1.28
1968 1972 2.408487 CGTGTGTAGCGCGCTAATTATG 60.408 50.000 39.73 27.21 44.35 1.90
1969 1973 2.538449 GTGTGTAGCGCGCTAATTATGT 59.462 45.455 39.73 16.53 0.00 2.29
1970 1974 2.538037 TGTGTAGCGCGCTAATTATGTG 59.462 45.455 39.73 0.00 0.00 3.21
1971 1975 2.792674 GTGTAGCGCGCTAATTATGTGA 59.207 45.455 39.73 16.67 0.00 3.58
1972 1976 3.428870 GTGTAGCGCGCTAATTATGTGAT 59.571 43.478 39.73 14.38 0.00 3.06
1973 1977 4.055360 TGTAGCGCGCTAATTATGTGATT 58.945 39.130 39.73 14.16 0.00 2.57
1974 1978 5.118050 GTGTAGCGCGCTAATTATGTGATTA 59.882 40.000 39.73 15.04 0.00 1.75
1975 1979 4.910746 AGCGCGCTAATTATGTGATTAG 57.089 40.909 35.79 1.40 40.80 1.73
1983 1987 6.319229 CTAATTATGTGATTAGCGCCGTAG 57.681 41.667 2.29 0.00 34.05 3.51
1984 1988 2.060326 TATGTGATTAGCGCCGTAGC 57.940 50.000 2.29 0.00 37.41 3.58
1995 1999 2.707039 CCGTAGCGGCCGATTTTG 59.293 61.111 33.48 16.00 41.17 2.44
1996 2000 2.022762 CGTAGCGGCCGATTTTGC 59.977 61.111 33.48 10.17 0.00 3.68
1997 2001 2.407616 GTAGCGGCCGATTTTGCC 59.592 61.111 33.48 9.31 45.70 4.52
2004 2008 2.893671 GCCGATTTTGCCAAAACGT 58.106 47.368 4.45 0.00 32.37 3.99
2005 2009 2.053282 GCCGATTTTGCCAAAACGTA 57.947 45.000 4.45 0.00 32.37 3.57
2006 2010 2.395654 GCCGATTTTGCCAAAACGTAA 58.604 42.857 4.45 0.00 32.37 3.18
2007 2011 2.154198 GCCGATTTTGCCAAAACGTAAC 59.846 45.455 4.45 0.91 32.37 2.50
2008 2012 2.402378 CCGATTTTGCCAAAACGTAACG 59.598 45.455 4.45 6.54 32.37 3.18
2009 2013 3.037324 CGATTTTGCCAAAACGTAACGT 58.963 40.909 4.45 0.00 43.97 3.99
2010 2014 3.116700 CGATTTTGCCAAAACGTAACGTC 59.883 43.478 4.45 0.00 39.99 4.34
2011 2015 3.761311 TTTTGCCAAAACGTAACGTCT 57.239 38.095 0.00 0.00 39.99 4.18
2012 2016 3.322230 TTTGCCAAAACGTAACGTCTC 57.678 42.857 0.00 0.00 39.99 3.36
2013 2017 1.219646 TGCCAAAACGTAACGTCTCC 58.780 50.000 0.00 0.00 39.99 3.71
2014 2018 0.514255 GCCAAAACGTAACGTCTCCC 59.486 55.000 0.00 0.00 39.99 4.30
2015 2019 1.875157 GCCAAAACGTAACGTCTCCCT 60.875 52.381 0.00 0.00 39.99 4.20
2016 2020 2.486918 CCAAAACGTAACGTCTCCCTT 58.513 47.619 0.00 0.00 39.99 3.95
2017 2021 2.477754 CCAAAACGTAACGTCTCCCTTC 59.522 50.000 0.00 0.00 39.99 3.46
2018 2022 2.445565 AAACGTAACGTCTCCCTTCC 57.554 50.000 0.00 0.00 39.99 3.46
2019 2023 0.242017 AACGTAACGTCTCCCTTCCG 59.758 55.000 0.00 0.00 39.99 4.30
2020 2024 0.606401 ACGTAACGTCTCCCTTCCGA 60.606 55.000 0.00 0.00 33.69 4.55
2021 2025 0.523072 CGTAACGTCTCCCTTCCGAA 59.477 55.000 0.00 0.00 0.00 4.30
2022 2026 1.133790 CGTAACGTCTCCCTTCCGAAT 59.866 52.381 0.00 0.00 0.00 3.34
2023 2027 2.355756 CGTAACGTCTCCCTTCCGAATA 59.644 50.000 0.00 0.00 0.00 1.75
2024 2028 3.004106 CGTAACGTCTCCCTTCCGAATAT 59.996 47.826 0.00 0.00 0.00 1.28
2025 2029 3.454371 AACGTCTCCCTTCCGAATATG 57.546 47.619 0.00 0.00 0.00 1.78
2026 2030 1.068741 ACGTCTCCCTTCCGAATATGC 59.931 52.381 0.00 0.00 0.00 3.14
2027 2031 1.341531 CGTCTCCCTTCCGAATATGCT 59.658 52.381 0.00 0.00 0.00 3.79
2028 2032 2.557056 CGTCTCCCTTCCGAATATGCTA 59.443 50.000 0.00 0.00 0.00 3.49
2029 2033 3.193691 CGTCTCCCTTCCGAATATGCTAT 59.806 47.826 0.00 0.00 0.00 2.97
2030 2034 4.398358 CGTCTCCCTTCCGAATATGCTATA 59.602 45.833 0.00 0.00 0.00 1.31
2031 2035 5.105877 CGTCTCCCTTCCGAATATGCTATAA 60.106 44.000 0.00 0.00 0.00 0.98
2032 2036 6.100668 GTCTCCCTTCCGAATATGCTATAAC 58.899 44.000 0.00 0.00 0.00 1.89
2033 2037 5.187186 TCTCCCTTCCGAATATGCTATAACC 59.813 44.000 0.00 0.00 0.00 2.85
2034 2038 4.081862 TCCCTTCCGAATATGCTATAACCG 60.082 45.833 0.00 0.00 0.00 4.44
2035 2039 3.617263 CCTTCCGAATATGCTATAACCGC 59.383 47.826 0.00 0.00 0.00 5.68
2036 2040 2.871133 TCCGAATATGCTATAACCGCG 58.129 47.619 0.00 0.00 0.00 6.46
2037 2041 2.229543 TCCGAATATGCTATAACCGCGT 59.770 45.455 4.92 0.00 0.00 6.01
2038 2042 2.991190 CCGAATATGCTATAACCGCGTT 59.009 45.455 4.92 1.95 0.00 4.84
2039 2043 4.082841 TCCGAATATGCTATAACCGCGTTA 60.083 41.667 4.92 4.43 32.36 3.18
2040 2044 4.802039 CCGAATATGCTATAACCGCGTTAT 59.198 41.667 4.92 11.68 41.02 1.89
2041 2045 5.972973 CCGAATATGCTATAACCGCGTTATA 59.027 40.000 4.92 12.18 39.18 0.98
2042 2046 6.473131 CCGAATATGCTATAACCGCGTTATAA 59.527 38.462 4.92 1.10 39.49 0.98
2043 2047 7.168637 CCGAATATGCTATAACCGCGTTATAAT 59.831 37.037 4.92 7.79 39.49 1.28
2044 2048 7.996551 CGAATATGCTATAACCGCGTTATAATG 59.003 37.037 4.92 0.00 39.49 1.90
2045 2049 7.709269 ATATGCTATAACCGCGTTATAATGG 57.291 36.000 4.92 3.72 39.49 3.16
2046 2050 3.680937 TGCTATAACCGCGTTATAATGGC 59.319 43.478 4.92 12.75 39.49 4.40
2055 2059 4.336532 GCGTTATAATGGCGAAATAGGG 57.663 45.455 6.81 0.00 0.00 3.53
2056 2060 3.749609 GCGTTATAATGGCGAAATAGGGT 59.250 43.478 6.81 0.00 0.00 4.34
2057 2061 4.378046 GCGTTATAATGGCGAAATAGGGTG 60.378 45.833 6.81 0.00 0.00 4.61
2058 2062 4.378046 CGTTATAATGGCGAAATAGGGTGC 60.378 45.833 0.00 0.00 0.00 5.01
2059 2063 3.508845 ATAATGGCGAAATAGGGTGCT 57.491 42.857 0.00 0.00 0.00 4.40
2060 2064 4.634012 ATAATGGCGAAATAGGGTGCTA 57.366 40.909 0.00 0.00 0.00 3.49
2061 2065 3.508845 AATGGCGAAATAGGGTGCTAT 57.491 42.857 0.00 0.00 0.00 2.97
2062 2066 3.508845 ATGGCGAAATAGGGTGCTATT 57.491 42.857 0.00 0.00 0.00 1.73
2063 2067 3.290948 TGGCGAAATAGGGTGCTATTT 57.709 42.857 0.00 0.00 40.84 1.40
2064 2068 3.626930 TGGCGAAATAGGGTGCTATTTT 58.373 40.909 0.00 0.00 38.98 1.82
2065 2069 4.020543 TGGCGAAATAGGGTGCTATTTTT 58.979 39.130 0.00 0.00 38.98 1.94
2239 2243 6.266168 TGCCAAGTATCAATTTTTCGATGT 57.734 33.333 0.00 0.00 0.00 3.06
2260 2265 5.919755 TGTGTTGGTTGACTAGTTGATACA 58.080 37.500 0.00 0.00 0.00 2.29
2382 2391 6.042208 ACTCTCTATAGGGAAAAGGTATGTGC 59.958 42.308 3.37 0.00 0.00 4.57
2670 2683 1.332375 CTTTTCGGCTGTGGAAAACGA 59.668 47.619 0.00 0.00 38.18 3.85
2738 2751 6.044682 CAGTCCCATTCCTTTATTTGAATGC 58.955 40.000 6.69 0.00 44.08 3.56
2798 2812 8.902806 TGTATGGAATGCTGGATTTACTTTTAG 58.097 33.333 0.00 0.00 0.00 1.85
3018 3038 4.274950 TCAACGATTCCCAACTTTCTGTTC 59.725 41.667 0.00 0.00 36.63 3.18
3084 3104 6.929049 TCCGCATGATTCTATTCTACGAAAAT 59.071 34.615 0.00 0.00 0.00 1.82
3115 3135 7.589958 TTTAATTTGGCAAAGAGGAACTGTA 57.410 32.000 18.61 0.00 41.55 2.74
3158 3178 7.654520 TCCTAACATACCGACAAATGTATAAGC 59.345 37.037 0.00 0.00 35.30 3.09
3198 3218 5.630121 TGAAACTGGATAACCAACACTCAT 58.370 37.500 0.00 0.00 46.32 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.032014 CACTGGGTTCAACACCTTGG 58.968 55.000 0.00 0.00 46.38 3.61
109 110 1.248785 ATTGCTCTGGCCTTGCACAG 61.249 55.000 15.34 0.00 36.37 3.66
176 177 9.579932 TGCAATTATATGTCACATTATTGGGTA 57.420 29.630 15.89 0.00 0.00 3.69
272 273 7.076446 AGTGACAATATCTGGTATAAGGTCCT 58.924 38.462 0.00 0.00 0.00 3.85
415 419 3.355378 CTTCACTGGCATACCCATGAAA 58.645 45.455 0.00 0.00 44.33 2.69
702 706 3.070446 AGTGATAAACAGTTGTGTCCGGA 59.930 43.478 0.00 0.00 35.08 5.14
781 785 5.818136 ATACCACCGTTCATCATTTCAAG 57.182 39.130 0.00 0.00 0.00 3.02
806 810 1.349688 AGAACACAATGGTAGGCCGAA 59.650 47.619 0.00 0.00 37.67 4.30
1577 1581 4.094146 CGTTGCCTTTTTCCAACAACAATT 59.906 37.500 0.00 0.00 40.93 2.32
1603 1607 6.577427 GCTATATTTTGTAGCGCGCTATTTTT 59.423 34.615 39.99 25.58 35.68 1.94
1604 1608 6.077838 GCTATATTTTGTAGCGCGCTATTTT 58.922 36.000 39.99 24.95 35.68 1.82
1605 1609 5.618561 GCTATATTTTGTAGCGCGCTATTT 58.381 37.500 39.99 23.11 35.68 1.40
1606 1610 5.204673 GCTATATTTTGTAGCGCGCTATT 57.795 39.130 39.99 24.33 35.68 1.73
1607 1611 4.842139 GCTATATTTTGTAGCGCGCTAT 57.158 40.909 39.99 28.03 35.68 2.97
1614 1618 2.742589 GGGCCTCGCTATATTTTGTAGC 59.257 50.000 0.84 0.00 40.83 3.58
1615 1619 4.273148 AGGGCCTCGCTATATTTTGTAG 57.727 45.455 0.00 0.00 0.00 2.74
1616 1620 4.347000 AGAAGGGCCTCGCTATATTTTGTA 59.653 41.667 6.46 0.00 0.00 2.41
1617 1621 3.136626 AGAAGGGCCTCGCTATATTTTGT 59.863 43.478 6.46 0.00 0.00 2.83
1618 1622 3.744660 AGAAGGGCCTCGCTATATTTTG 58.255 45.455 6.46 0.00 0.00 2.44
1619 1623 3.244596 GGAGAAGGGCCTCGCTATATTTT 60.245 47.826 6.46 0.00 34.08 1.82
1620 1624 2.303311 GGAGAAGGGCCTCGCTATATTT 59.697 50.000 6.46 0.00 34.08 1.40
1621 1625 1.903183 GGAGAAGGGCCTCGCTATATT 59.097 52.381 6.46 0.00 34.08 1.28
1622 1626 1.203187 TGGAGAAGGGCCTCGCTATAT 60.203 52.381 6.46 0.00 34.08 0.86
1623 1627 0.187606 TGGAGAAGGGCCTCGCTATA 59.812 55.000 6.46 0.00 34.08 1.31
1624 1628 0.691078 TTGGAGAAGGGCCTCGCTAT 60.691 55.000 6.46 0.00 34.08 2.97
1625 1629 0.907704 TTTGGAGAAGGGCCTCGCTA 60.908 55.000 6.46 0.00 34.08 4.26
1626 1630 1.566298 ATTTGGAGAAGGGCCTCGCT 61.566 55.000 6.46 7.69 34.08 4.93
1627 1631 1.077429 ATTTGGAGAAGGGCCTCGC 60.077 57.895 6.46 1.59 34.08 5.03
1628 1632 1.379642 GCATTTGGAGAAGGGCCTCG 61.380 60.000 6.46 0.00 34.08 4.63
1629 1633 0.033699 AGCATTTGGAGAAGGGCCTC 60.034 55.000 6.46 0.00 0.00 4.70
1630 1634 1.064389 GTAGCATTTGGAGAAGGGCCT 60.064 52.381 0.00 0.00 0.00 5.19
1631 1635 1.340991 TGTAGCATTTGGAGAAGGGCC 60.341 52.381 0.00 0.00 0.00 5.80
1632 1636 1.745653 GTGTAGCATTTGGAGAAGGGC 59.254 52.381 0.00 0.00 0.00 5.19
1633 1637 3.071874 TGTGTAGCATTTGGAGAAGGG 57.928 47.619 0.00 0.00 0.00 3.95
1634 1638 4.074970 ACTTGTGTAGCATTTGGAGAAGG 58.925 43.478 0.00 0.00 0.00 3.46
1635 1639 5.695851 AACTTGTGTAGCATTTGGAGAAG 57.304 39.130 0.00 0.00 0.00 2.85
1636 1640 7.065803 GCTATAACTTGTGTAGCATTTGGAGAA 59.934 37.037 11.18 0.00 44.25 2.87
1637 1641 6.538742 GCTATAACTTGTGTAGCATTTGGAGA 59.461 38.462 11.18 0.00 44.25 3.71
1638 1642 6.510157 CGCTATAACTTGTGTAGCATTTGGAG 60.510 42.308 14.40 0.00 44.89 3.86
1639 1643 5.293324 CGCTATAACTTGTGTAGCATTTGGA 59.707 40.000 14.40 0.00 44.89 3.53
1640 1644 5.501715 CGCTATAACTTGTGTAGCATTTGG 58.498 41.667 14.40 0.76 44.89 3.28
1641 1645 4.963953 GCGCTATAACTTGTGTAGCATTTG 59.036 41.667 0.00 4.34 44.89 2.32
1642 1646 4.260212 CGCGCTATAACTTGTGTAGCATTT 60.260 41.667 5.56 0.00 44.89 2.32
1643 1647 3.245284 CGCGCTATAACTTGTGTAGCATT 59.755 43.478 5.56 0.00 44.89 3.56
1644 1648 2.794910 CGCGCTATAACTTGTGTAGCAT 59.205 45.455 5.56 0.00 44.89 3.79
1645 1649 2.190161 CGCGCTATAACTTGTGTAGCA 58.810 47.619 5.56 0.00 44.89 3.49
1646 1650 1.071436 GCGCGCTATAACTTGTGTAGC 60.071 52.381 26.67 7.79 42.08 3.58
1647 1651 2.460918 AGCGCGCTATAACTTGTGTAG 58.539 47.619 35.79 0.00 0.00 2.74
1648 1652 2.572191 AGCGCGCTATAACTTGTGTA 57.428 45.000 35.79 0.00 0.00 2.90
1649 1653 2.572191 TAGCGCGCTATAACTTGTGT 57.428 45.000 35.48 11.63 0.00 3.72
1650 1654 4.433022 GCTATTAGCGCGCTATAACTTGTG 60.433 45.833 38.51 22.32 0.00 3.33
1651 1655 3.673809 GCTATTAGCGCGCTATAACTTGT 59.326 43.478 38.51 20.48 0.00 3.16
1652 1656 3.673338 TGCTATTAGCGCGCTATAACTTG 59.327 43.478 38.51 24.56 46.26 3.16
1653 1657 3.909430 TGCTATTAGCGCGCTATAACTT 58.091 40.909 38.51 22.78 46.26 2.66
1654 1658 3.570926 TGCTATTAGCGCGCTATAACT 57.429 42.857 38.51 24.85 46.26 2.24
1655 1659 3.542291 GCATGCTATTAGCGCGCTATAAC 60.542 47.826 38.51 27.00 46.26 1.89
1656 1660 2.603110 GCATGCTATTAGCGCGCTATAA 59.397 45.455 38.51 28.25 46.26 0.98
1657 1661 2.159240 AGCATGCTATTAGCGCGCTATA 60.159 45.455 38.51 28.09 45.58 1.31
1658 1662 1.002366 GCATGCTATTAGCGCGCTAT 58.998 50.000 38.51 28.44 46.26 2.97
1659 1663 0.038251 AGCATGCTATTAGCGCGCTA 60.038 50.000 35.48 35.48 45.58 4.26
1660 1664 1.301244 AGCATGCTATTAGCGCGCT 60.301 52.632 38.01 38.01 46.26 5.92
1661 1665 1.002366 ATAGCATGCTATTAGCGCGC 58.998 50.000 30.43 26.66 46.26 6.86
1662 1666 5.395325 AAATATAGCATGCTATTAGCGCG 57.605 39.130 37.80 0.00 46.26 6.86
1663 1667 5.232202 TCGAAATATAGCATGCTATTAGCGC 59.768 40.000 37.80 23.74 46.26 5.92
1664 1668 6.812481 TCGAAATATAGCATGCTATTAGCG 57.188 37.500 37.80 31.66 46.26 4.26
1668 1672 9.113838 CCCTATTTCGAAATATAGCATGCTATT 57.886 33.333 37.80 24.84 39.65 1.73
1669 1673 8.267894 ACCCTATTTCGAAATATAGCATGCTAT 58.732 33.333 35.68 35.68 41.58 2.97
1670 1674 7.620880 ACCCTATTTCGAAATATAGCATGCTA 58.379 34.615 28.72 28.72 31.03 3.49
1671 1675 6.476378 ACCCTATTTCGAAATATAGCATGCT 58.524 36.000 26.39 25.99 31.03 3.79
1672 1676 6.743575 ACCCTATTTCGAAATATAGCATGC 57.256 37.500 26.39 10.51 31.03 4.06
1673 1677 7.538678 GCAAACCCTATTTCGAAATATAGCATG 59.461 37.037 26.39 21.88 31.03 4.06
1674 1678 7.230510 TGCAAACCCTATTTCGAAATATAGCAT 59.769 33.333 26.39 13.21 31.03 3.79
1675 1679 6.544197 TGCAAACCCTATTTCGAAATATAGCA 59.456 34.615 26.39 23.41 31.03 3.49
1676 1680 6.966021 TGCAAACCCTATTTCGAAATATAGC 58.034 36.000 26.39 21.75 31.03 2.97
1677 1681 9.796120 TTTTGCAAACCCTATTTCGAAATATAG 57.204 29.630 26.39 22.02 31.03 1.31
1736 1740 9.582648 TTGCTCCTAGGAAAAATTTAGTTACTT 57.417 29.630 13.77 0.00 0.00 2.24
1737 1741 9.232473 CTTGCTCCTAGGAAAAATTTAGTTACT 57.768 33.333 13.77 0.00 0.00 2.24
1738 1742 7.968956 GCTTGCTCCTAGGAAAAATTTAGTTAC 59.031 37.037 13.77 0.00 0.00 2.50
1739 1743 7.668052 TGCTTGCTCCTAGGAAAAATTTAGTTA 59.332 33.333 13.77 0.00 0.00 2.24
1740 1744 6.493458 TGCTTGCTCCTAGGAAAAATTTAGTT 59.507 34.615 13.77 0.00 0.00 2.24
1741 1745 6.010219 TGCTTGCTCCTAGGAAAAATTTAGT 58.990 36.000 13.77 0.00 0.00 2.24
1742 1746 6.515272 TGCTTGCTCCTAGGAAAAATTTAG 57.485 37.500 13.77 0.00 0.00 1.85
1743 1747 6.909550 TTGCTTGCTCCTAGGAAAAATTTA 57.090 33.333 13.77 0.00 0.00 1.40
1744 1748 5.806654 TTGCTTGCTCCTAGGAAAAATTT 57.193 34.783 13.77 0.00 0.00 1.82
1745 1749 7.666063 ATATTGCTTGCTCCTAGGAAAAATT 57.334 32.000 13.77 0.00 0.00 1.82
1746 1750 8.800332 CATATATTGCTTGCTCCTAGGAAAAAT 58.200 33.333 13.77 5.78 0.00 1.82
1747 1751 8.169977 CATATATTGCTTGCTCCTAGGAAAAA 57.830 34.615 13.77 9.11 0.00 1.94
1748 1752 7.750229 CATATATTGCTTGCTCCTAGGAAAA 57.250 36.000 13.77 9.47 0.00 2.29
1764 1768 7.414222 AGATTTGGCCCTTATGCATATATTG 57.586 36.000 7.36 0.00 0.00 1.90
1765 1769 7.781693 CCTAGATTTGGCCCTTATGCATATATT 59.218 37.037 7.36 0.00 0.00 1.28
1766 1770 7.129349 TCCTAGATTTGGCCCTTATGCATATAT 59.871 37.037 7.36 0.00 0.00 0.86
1767 1771 6.446759 TCCTAGATTTGGCCCTTATGCATATA 59.553 38.462 7.36 0.00 0.00 0.86
1768 1772 5.253798 TCCTAGATTTGGCCCTTATGCATAT 59.746 40.000 7.36 0.00 0.00 1.78
1769 1773 4.601420 TCCTAGATTTGGCCCTTATGCATA 59.399 41.667 1.16 1.16 0.00 3.14
1770 1774 3.398967 TCCTAGATTTGGCCCTTATGCAT 59.601 43.478 3.79 3.79 0.00 3.96
1771 1775 2.782925 TCCTAGATTTGGCCCTTATGCA 59.217 45.455 0.00 0.00 0.00 3.96
1772 1776 3.149981 GTCCTAGATTTGGCCCTTATGC 58.850 50.000 0.00 0.00 0.00 3.14
1773 1777 4.437682 TGTCCTAGATTTGGCCCTTATG 57.562 45.455 0.00 0.00 0.00 1.90
1774 1778 6.780198 TTATGTCCTAGATTTGGCCCTTAT 57.220 37.500 0.00 0.00 0.00 1.73
1775 1779 6.584471 TTTATGTCCTAGATTTGGCCCTTA 57.416 37.500 0.00 0.00 0.00 2.69
1776 1780 5.466127 TTTATGTCCTAGATTTGGCCCTT 57.534 39.130 0.00 0.00 0.00 3.95
1777 1781 5.466127 TTTTATGTCCTAGATTTGGCCCT 57.534 39.130 0.00 0.00 0.00 5.19
1778 1782 6.731292 ATTTTTATGTCCTAGATTTGGCCC 57.269 37.500 0.00 0.00 0.00 5.80
1779 1783 7.555965 ACAATTTTTATGTCCTAGATTTGGCC 58.444 34.615 0.00 0.00 0.00 5.36
1790 1794 9.959749 TGTTTGAGACTTACAATTTTTATGTCC 57.040 29.630 5.46 0.75 32.27 4.02
1796 1800 9.921637 TGAAACTGTTTGAGACTTACAATTTTT 57.078 25.926 11.03 0.00 0.00 1.94
1797 1801 9.921637 TTGAAACTGTTTGAGACTTACAATTTT 57.078 25.926 11.03 0.00 0.00 1.82
1798 1802 9.573133 CTTGAAACTGTTTGAGACTTACAATTT 57.427 29.630 11.03 0.00 0.00 1.82
1799 1803 8.956426 TCTTGAAACTGTTTGAGACTTACAATT 58.044 29.630 11.03 0.00 0.00 2.32
1800 1804 8.506168 TCTTGAAACTGTTTGAGACTTACAAT 57.494 30.769 11.03 0.00 0.00 2.71
1801 1805 7.915293 TCTTGAAACTGTTTGAGACTTACAA 57.085 32.000 11.03 5.24 0.00 2.41
1802 1806 9.607988 TTATCTTGAAACTGTTTGAGACTTACA 57.392 29.630 11.03 0.00 0.00 2.41
1810 1814 9.787532 CACTCTTTTTATCTTGAAACTGTTTGA 57.212 29.630 11.03 0.00 0.00 2.69
1811 1815 9.787532 TCACTCTTTTTATCTTGAAACTGTTTG 57.212 29.630 11.03 0.00 0.00 2.93
1813 1817 9.396022 TCTCACTCTTTTTATCTTGAAACTGTT 57.604 29.630 0.00 0.00 0.00 3.16
1814 1818 8.964476 TCTCACTCTTTTTATCTTGAAACTGT 57.036 30.769 0.00 0.00 0.00 3.55
1817 1821 9.670719 CCTTTCTCACTCTTTTTATCTTGAAAC 57.329 33.333 0.00 0.00 0.00 2.78
1818 1822 9.408648 ACCTTTCTCACTCTTTTTATCTTGAAA 57.591 29.630 0.00 0.00 0.00 2.69
1819 1823 8.980481 ACCTTTCTCACTCTTTTTATCTTGAA 57.020 30.769 0.00 0.00 0.00 2.69
1820 1824 9.712305 CTACCTTTCTCACTCTTTTTATCTTGA 57.288 33.333 0.00 0.00 0.00 3.02
1821 1825 9.495572 ACTACCTTTCTCACTCTTTTTATCTTG 57.504 33.333 0.00 0.00 0.00 3.02
1822 1826 9.495572 CACTACCTTTCTCACTCTTTTTATCTT 57.504 33.333 0.00 0.00 0.00 2.40
1823 1827 8.097662 CCACTACCTTTCTCACTCTTTTTATCT 58.902 37.037 0.00 0.00 0.00 1.98
1824 1828 7.878644 ACCACTACCTTTCTCACTCTTTTTATC 59.121 37.037 0.00 0.00 0.00 1.75
1825 1829 7.746703 ACCACTACCTTTCTCACTCTTTTTAT 58.253 34.615 0.00 0.00 0.00 1.40
1826 1830 7.133133 ACCACTACCTTTCTCACTCTTTTTA 57.867 36.000 0.00 0.00 0.00 1.52
1827 1831 6.002653 ACCACTACCTTTCTCACTCTTTTT 57.997 37.500 0.00 0.00 0.00 1.94
1828 1832 5.612351 GACCACTACCTTTCTCACTCTTTT 58.388 41.667 0.00 0.00 0.00 2.27
1829 1833 4.262079 CGACCACTACCTTTCTCACTCTTT 60.262 45.833 0.00 0.00 0.00 2.52
1830 1834 3.256136 CGACCACTACCTTTCTCACTCTT 59.744 47.826 0.00 0.00 0.00 2.85
1831 1835 2.820787 CGACCACTACCTTTCTCACTCT 59.179 50.000 0.00 0.00 0.00 3.24
1832 1836 2.557490 ACGACCACTACCTTTCTCACTC 59.443 50.000 0.00 0.00 0.00 3.51
1833 1837 2.296471 CACGACCACTACCTTTCTCACT 59.704 50.000 0.00 0.00 0.00 3.41
1834 1838 2.609737 CCACGACCACTACCTTTCTCAC 60.610 54.545 0.00 0.00 0.00 3.51
1835 1839 1.616865 CCACGACCACTACCTTTCTCA 59.383 52.381 0.00 0.00 0.00 3.27
1836 1840 1.067071 CCCACGACCACTACCTTTCTC 60.067 57.143 0.00 0.00 0.00 2.87
1837 1841 0.974383 CCCACGACCACTACCTTTCT 59.026 55.000 0.00 0.00 0.00 2.52
1838 1842 0.683412 ACCCACGACCACTACCTTTC 59.317 55.000 0.00 0.00 0.00 2.62
1839 1843 1.134228 AACCCACGACCACTACCTTT 58.866 50.000 0.00 0.00 0.00 3.11
1840 1844 0.395312 CAACCCACGACCACTACCTT 59.605 55.000 0.00 0.00 0.00 3.50
1841 1845 1.477685 CCAACCCACGACCACTACCT 61.478 60.000 0.00 0.00 0.00 3.08
1842 1846 1.004200 CCAACCCACGACCACTACC 60.004 63.158 0.00 0.00 0.00 3.18
1843 1847 0.107268 AACCAACCCACGACCACTAC 59.893 55.000 0.00 0.00 0.00 2.73
1844 1848 0.838608 AAACCAACCCACGACCACTA 59.161 50.000 0.00 0.00 0.00 2.74
1845 1849 0.033894 AAAACCAACCCACGACCACT 60.034 50.000 0.00 0.00 0.00 4.00
1846 1850 0.101579 CAAAACCAACCCACGACCAC 59.898 55.000 0.00 0.00 0.00 4.16
1847 1851 1.038130 CCAAAACCAACCCACGACCA 61.038 55.000 0.00 0.00 0.00 4.02
1848 1852 1.737201 CCAAAACCAACCCACGACC 59.263 57.895 0.00 0.00 0.00 4.79
1849 1853 1.066752 GCCAAAACCAACCCACGAC 59.933 57.895 0.00 0.00 0.00 4.34
1850 1854 2.128507 GGCCAAAACCAACCCACGA 61.129 57.895 0.00 0.00 0.00 4.35
1851 1855 2.131067 AGGCCAAAACCAACCCACG 61.131 57.895 5.01 0.00 0.00 4.94
1852 1856 1.445518 CAGGCCAAAACCAACCCAC 59.554 57.895 5.01 0.00 0.00 4.61
1853 1857 2.439104 GCAGGCCAAAACCAACCCA 61.439 57.895 5.01 0.00 0.00 4.51
1854 1858 2.140138 AGCAGGCCAAAACCAACCC 61.140 57.895 5.01 0.00 0.00 4.11
1855 1859 1.069596 CAGCAGGCCAAAACCAACC 59.930 57.895 5.01 0.00 0.00 3.77
1856 1860 1.069596 CCAGCAGGCCAAAACCAAC 59.930 57.895 5.01 0.00 0.00 3.77
1857 1861 2.139484 CCCAGCAGGCCAAAACCAA 61.139 57.895 5.01 0.00 0.00 3.67
1858 1862 2.523902 CCCAGCAGGCCAAAACCA 60.524 61.111 5.01 0.00 0.00 3.67
1877 1881 4.954970 ACAACCACAGCCCAGCCG 62.955 66.667 0.00 0.00 0.00 5.52
1878 1882 1.685355 AAAACAACCACAGCCCAGCC 61.685 55.000 0.00 0.00 0.00 4.85
1879 1883 1.000274 CTAAAACAACCACAGCCCAGC 60.000 52.381 0.00 0.00 0.00 4.85
1880 1884 2.306847 ACTAAAACAACCACAGCCCAG 58.693 47.619 0.00 0.00 0.00 4.45
1881 1885 2.445682 ACTAAAACAACCACAGCCCA 57.554 45.000 0.00 0.00 0.00 5.36
1882 1886 3.812156 AAACTAAAACAACCACAGCCC 57.188 42.857 0.00 0.00 0.00 5.19
1883 1887 3.308595 GCAAAACTAAAACAACCACAGCC 59.691 43.478 0.00 0.00 0.00 4.85
1884 1888 3.929610 TGCAAAACTAAAACAACCACAGC 59.070 39.130 0.00 0.00 0.00 4.40
1885 1889 5.006552 CCATGCAAAACTAAAACAACCACAG 59.993 40.000 0.00 0.00 0.00 3.66
1886 1890 4.872691 CCATGCAAAACTAAAACAACCACA 59.127 37.500 0.00 0.00 0.00 4.17
1887 1891 4.260579 GCCATGCAAAACTAAAACAACCAC 60.261 41.667 0.00 0.00 0.00 4.16
1888 1892 3.873952 GCCATGCAAAACTAAAACAACCA 59.126 39.130 0.00 0.00 0.00 3.67
1889 1893 3.249799 GGCCATGCAAAACTAAAACAACC 59.750 43.478 0.00 0.00 0.00 3.77
1890 1894 4.024977 CAGGCCATGCAAAACTAAAACAAC 60.025 41.667 5.01 0.00 0.00 3.32
1891 1895 4.125703 CAGGCCATGCAAAACTAAAACAA 58.874 39.130 5.01 0.00 0.00 2.83
1892 1896 3.726607 CAGGCCATGCAAAACTAAAACA 58.273 40.909 5.01 0.00 0.00 2.83
1905 1909 1.696988 GTTTTAACGTGCAGGCCATG 58.303 50.000 5.01 0.97 36.50 3.66
1906 1910 0.239879 CGTTTTAACGTGCAGGCCAT 59.760 50.000 5.01 0.00 46.63 4.40
1907 1911 1.649815 CGTTTTAACGTGCAGGCCA 59.350 52.632 5.01 0.00 46.63 5.36
1908 1912 4.526152 CGTTTTAACGTGCAGGCC 57.474 55.556 6.26 0.00 46.63 5.19
1917 1921 6.513317 ACGTTGTAGCGTTATACGTTTTAAC 58.487 36.000 13.79 2.00 44.73 2.01
1918 1922 6.683090 ACGTTGTAGCGTTATACGTTTTAA 57.317 33.333 13.79 0.00 44.73 1.52
1932 1936 2.919229 ACACACGCTATAACGTTGTAGC 59.081 45.455 34.30 34.30 45.75 3.58
1933 1937 4.203764 GCTACACACGCTATAACGTTGTAG 59.796 45.833 25.98 25.98 45.75 2.74
1934 1938 4.097714 GCTACACACGCTATAACGTTGTA 58.902 43.478 11.99 7.93 45.75 2.41
1935 1939 2.919229 GCTACACACGCTATAACGTTGT 59.081 45.455 11.99 6.97 45.75 3.32
1936 1940 2.036004 CGCTACACACGCTATAACGTTG 60.036 50.000 11.99 4.29 45.75 4.10
1937 1941 2.179589 CGCTACACACGCTATAACGTT 58.820 47.619 5.88 5.88 45.75 3.99
1947 1951 1.193644 TAATTAGCGCGCTACACACG 58.806 50.000 38.48 0.00 0.00 4.49
1948 1952 2.538449 ACATAATTAGCGCGCTACACAC 59.462 45.455 38.48 4.71 0.00 3.82
1949 1953 2.538037 CACATAATTAGCGCGCTACACA 59.462 45.455 38.48 25.57 0.00 3.72
1950 1954 2.792674 TCACATAATTAGCGCGCTACAC 59.207 45.455 38.48 6.42 0.00 2.90
1951 1955 3.086818 TCACATAATTAGCGCGCTACA 57.913 42.857 38.48 27.91 0.00 2.74
1952 1956 4.647291 AATCACATAATTAGCGCGCTAC 57.353 40.909 38.48 7.30 0.00 3.58
1954 1958 4.910746 CTAATCACATAATTAGCGCGCT 57.089 40.909 38.01 38.01 33.68 5.92
1960 1964 5.220228 GCTACGGCGCTAATCACATAATTAG 60.220 44.000 6.90 0.00 40.63 1.73
1961 1965 4.624024 GCTACGGCGCTAATCACATAATTA 59.376 41.667 6.90 0.00 0.00 1.40
1962 1966 3.432252 GCTACGGCGCTAATCACATAATT 59.568 43.478 6.90 0.00 0.00 1.40
1963 1967 2.993899 GCTACGGCGCTAATCACATAAT 59.006 45.455 6.90 0.00 0.00 1.28
1964 1968 2.400399 GCTACGGCGCTAATCACATAA 58.600 47.619 6.90 0.00 0.00 1.90
1965 1969 2.060326 GCTACGGCGCTAATCACATA 57.940 50.000 6.90 0.00 0.00 2.29
1966 1970 2.900528 GCTACGGCGCTAATCACAT 58.099 52.632 6.90 0.00 0.00 3.21
1967 1971 4.412933 GCTACGGCGCTAATCACA 57.587 55.556 6.90 0.00 0.00 3.58
1979 1983 2.022762 GCAAAATCGGCCGCTACG 59.977 61.111 23.51 8.73 0.00 3.51
1980 1984 2.407616 GGCAAAATCGGCCGCTAC 59.592 61.111 23.51 6.05 42.39 3.58
1986 1990 2.053282 TACGTTTTGGCAAAATCGGC 57.947 45.000 31.17 19.63 40.93 5.54
1987 1991 2.402378 CGTTACGTTTTGGCAAAATCGG 59.598 45.455 31.17 24.07 40.93 4.18
1988 1992 3.037324 ACGTTACGTTTTGGCAAAATCG 58.963 40.909 28.83 28.83 41.87 3.34
1989 1993 4.284485 AGACGTTACGTTTTGGCAAAATC 58.716 39.130 26.41 17.74 41.37 2.17
1990 1994 4.284485 GAGACGTTACGTTTTGGCAAAAT 58.716 39.130 26.41 15.14 41.37 1.82
1991 1995 3.487209 GGAGACGTTACGTTTTGGCAAAA 60.487 43.478 20.81 20.81 41.37 2.44
1992 1996 2.031930 GGAGACGTTACGTTTTGGCAAA 59.968 45.455 12.82 8.93 41.37 3.68
1993 1997 1.598601 GGAGACGTTACGTTTTGGCAA 59.401 47.619 12.82 0.00 41.37 4.52
1994 1998 1.219646 GGAGACGTTACGTTTTGGCA 58.780 50.000 12.82 0.00 41.37 4.92
1995 1999 0.514255 GGGAGACGTTACGTTTTGGC 59.486 55.000 12.82 0.00 41.37 4.52
1996 2000 2.159327 AGGGAGACGTTACGTTTTGG 57.841 50.000 12.82 0.00 41.37 3.28
1997 2001 2.477754 GGAAGGGAGACGTTACGTTTTG 59.522 50.000 12.82 0.00 41.37 2.44
1998 2002 2.759191 GGAAGGGAGACGTTACGTTTT 58.241 47.619 12.82 3.52 41.37 2.43
1999 2003 2.445565 GGAAGGGAGACGTTACGTTT 57.554 50.000 12.82 6.17 41.37 3.60
2003 2007 2.955477 ATTCGGAAGGGAGACGTTAC 57.045 50.000 0.00 0.00 38.82 2.50
2004 2008 3.243636 GCATATTCGGAAGGGAGACGTTA 60.244 47.826 0.00 0.00 38.82 3.18
2005 2009 2.483188 GCATATTCGGAAGGGAGACGTT 60.483 50.000 0.00 0.00 42.01 3.99
2006 2010 1.068741 GCATATTCGGAAGGGAGACGT 59.931 52.381 0.00 0.00 0.00 4.34
2007 2011 1.341531 AGCATATTCGGAAGGGAGACG 59.658 52.381 0.00 0.00 0.00 4.18
2008 2012 4.810191 ATAGCATATTCGGAAGGGAGAC 57.190 45.455 0.00 0.00 0.00 3.36
2009 2013 5.187186 GGTTATAGCATATTCGGAAGGGAGA 59.813 44.000 0.00 0.00 0.00 3.71
2010 2014 5.420409 GGTTATAGCATATTCGGAAGGGAG 58.580 45.833 0.00 0.00 0.00 4.30
2011 2015 4.081862 CGGTTATAGCATATTCGGAAGGGA 60.082 45.833 0.00 0.00 0.00 4.20
2012 2016 4.181578 CGGTTATAGCATATTCGGAAGGG 58.818 47.826 0.00 0.00 0.00 3.95
2013 2017 3.617263 GCGGTTATAGCATATTCGGAAGG 59.383 47.826 0.00 0.00 34.19 3.46
2014 2018 3.303495 CGCGGTTATAGCATATTCGGAAG 59.697 47.826 0.00 0.00 34.19 3.46
2015 2019 3.247442 CGCGGTTATAGCATATTCGGAA 58.753 45.455 0.00 0.00 34.19 4.30
2016 2020 2.229543 ACGCGGTTATAGCATATTCGGA 59.770 45.455 12.47 0.00 34.19 4.55
2017 2021 2.602878 ACGCGGTTATAGCATATTCGG 58.397 47.619 12.47 0.00 34.19 4.30
2018 2022 5.944049 ATAACGCGGTTATAGCATATTCG 57.056 39.130 12.47 0.00 37.02 3.34
2019 2023 8.273557 CCATTATAACGCGGTTATAGCATATTC 58.726 37.037 12.47 0.00 40.54 1.75
2020 2024 7.254658 GCCATTATAACGCGGTTATAGCATATT 60.255 37.037 12.47 0.00 40.54 1.28
2021 2025 6.202188 GCCATTATAACGCGGTTATAGCATAT 59.798 38.462 12.47 4.71 40.54 1.78
2022 2026 5.521010 GCCATTATAACGCGGTTATAGCATA 59.479 40.000 12.47 0.00 40.54 3.14
2023 2027 4.331717 GCCATTATAACGCGGTTATAGCAT 59.668 41.667 12.47 5.64 40.54 3.79
2024 2028 3.680937 GCCATTATAACGCGGTTATAGCA 59.319 43.478 12.47 3.63 40.54 3.49
2025 2029 3.241868 CGCCATTATAACGCGGTTATAGC 60.242 47.826 12.47 13.70 40.54 2.97
2026 2030 4.168014 TCGCCATTATAACGCGGTTATAG 58.832 43.478 21.91 6.48 45.74 1.31
2027 2031 4.171663 TCGCCATTATAACGCGGTTATA 57.828 40.909 21.91 13.18 45.74 0.98
2028 2032 3.029320 TCGCCATTATAACGCGGTTAT 57.971 42.857 21.91 14.16 45.74 1.89
2029 2033 2.505628 TCGCCATTATAACGCGGTTA 57.494 45.000 21.91 7.35 45.74 2.85
2030 2034 1.654317 TTCGCCATTATAACGCGGTT 58.346 45.000 21.91 5.03 45.74 4.44
2031 2035 1.654317 TTTCGCCATTATAACGCGGT 58.346 45.000 21.91 6.42 45.74 5.68
2032 2036 2.961522 ATTTCGCCATTATAACGCGG 57.038 45.000 21.91 9.98 45.74 6.46
2034 2038 3.749609 ACCCTATTTCGCCATTATAACGC 59.250 43.478 0.00 0.00 0.00 4.84
2035 2039 4.378046 GCACCCTATTTCGCCATTATAACG 60.378 45.833 0.00 0.00 0.00 3.18
2036 2040 4.760204 AGCACCCTATTTCGCCATTATAAC 59.240 41.667 0.00 0.00 0.00 1.89
2037 2041 4.980573 AGCACCCTATTTCGCCATTATAA 58.019 39.130 0.00 0.00 0.00 0.98
2038 2042 4.634012 AGCACCCTATTTCGCCATTATA 57.366 40.909 0.00 0.00 0.00 0.98
2039 2043 3.508845 AGCACCCTATTTCGCCATTAT 57.491 42.857 0.00 0.00 0.00 1.28
2040 2044 4.634012 ATAGCACCCTATTTCGCCATTA 57.366 40.909 0.00 0.00 29.98 1.90
2041 2045 3.508845 ATAGCACCCTATTTCGCCATT 57.491 42.857 0.00 0.00 29.98 3.16
2042 2046 3.508845 AATAGCACCCTATTTCGCCAT 57.491 42.857 0.00 0.00 40.49 4.40
2043 2047 3.290948 AAATAGCACCCTATTTCGCCA 57.709 42.857 3.53 0.00 46.28 5.69
2064 2068 5.504994 CGATCTCACCTTTTTCCAACGAAAA 60.505 40.000 0.00 0.00 44.38 2.29
2065 2069 4.024387 CGATCTCACCTTTTTCCAACGAAA 60.024 41.667 0.00 0.00 36.18 3.46
2066 2070 3.496884 CGATCTCACCTTTTTCCAACGAA 59.503 43.478 0.00 0.00 0.00 3.85
2067 2071 3.064207 CGATCTCACCTTTTTCCAACGA 58.936 45.455 0.00 0.00 0.00 3.85
2068 2072 2.412847 GCGATCTCACCTTTTTCCAACG 60.413 50.000 0.00 0.00 0.00 4.10
2069 2073 2.095212 GGCGATCTCACCTTTTTCCAAC 60.095 50.000 0.00 0.00 0.00 3.77
2070 2074 2.159382 GGCGATCTCACCTTTTTCCAA 58.841 47.619 0.00 0.00 0.00 3.53
2071 2075 1.073125 TGGCGATCTCACCTTTTTCCA 59.927 47.619 0.00 0.00 0.00 3.53
2072 2076 1.821216 TGGCGATCTCACCTTTTTCC 58.179 50.000 0.00 0.00 0.00 3.13
2073 2077 2.162408 CCTTGGCGATCTCACCTTTTTC 59.838 50.000 0.00 0.00 0.00 2.29
2074 2078 2.162681 CCTTGGCGATCTCACCTTTTT 58.837 47.619 0.00 0.00 0.00 1.94
2239 2243 6.072728 GCAATGTATCAACTAGTCAACCAACA 60.073 38.462 0.00 0.00 0.00 3.33
2279 2284 5.532406 AGCAATAAAACTGTGCTTTCTGAGA 59.468 36.000 0.00 0.00 46.25 3.27
2382 2391 6.176183 AGTCAATCTGATTTGGTTCCTACAG 58.824 40.000 0.00 0.00 0.00 2.74
2738 2751 3.055963 TGAGGGTGGCATTGCTAAAAATG 60.056 43.478 8.82 0.00 39.98 2.32
2798 2812 0.390340 TCGGCATGAGCACTGAGAAC 60.390 55.000 0.00 0.00 44.61 3.01
3018 3038 7.653767 ACTACTCACGTGAAGGAAAATAAAG 57.346 36.000 20.49 5.61 0.00 1.85
3115 3135 6.303839 TGTTAGGATAACTTGTTTTGCTCCT 58.696 36.000 1.94 6.56 35.83 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.