Multiple sequence alignment - TraesCS1D01G056300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G056300 chr1D 100.000 2476 0 0 1 2476 37433212 37430737 0.000000e+00 4573
1 TraesCS1D01G056300 chr1D 95.322 1710 80 0 767 2476 36615932 36617641 0.000000e+00 2715
2 TraesCS1D01G056300 chr1D 86.989 1714 211 11 767 2476 38581751 38583456 0.000000e+00 1919
3 TraesCS1D01G056300 chr1D 86.608 1710 228 1 767 2476 36622344 36624052 0.000000e+00 1888
4 TraesCS1D01G056300 chr1D 88.382 241 24 4 57 293 36615703 36615943 1.120000e-73 287
5 TraesCS1D01G056300 chr1D 86.822 258 29 5 40 293 36622099 36622355 1.450000e-72 283
6 TraesCS1D01G056300 chr1A 93.626 1710 109 0 767 2476 36186057 36187766 0.000000e+00 2555
7 TraesCS1D01G056300 chr1A 93.158 1710 117 0 767 2476 36172555 36174264 0.000000e+00 2510
8 TraesCS1D01G056300 chr1A 90.713 1712 154 5 767 2476 36615449 36613741 0.000000e+00 2276
9 TraesCS1D01G056300 chr1A 97.952 293 6 0 1 293 36615730 36615438 2.200000e-140 508
10 TraesCS1D01G056300 chr1A 87.984 258 26 5 40 293 36607352 36607096 1.440000e-77 300
11 TraesCS1D01G056300 chr1B 88.889 1710 185 3 767 2475 56618265 56619970 0.000000e+00 2100
12 TraesCS1D01G056300 chr1B 88.707 1709 190 1 767 2475 56491356 56493061 0.000000e+00 2084
13 TraesCS1D01G056300 chr1B 88.136 1711 195 7 767 2476 56499540 56501243 0.000000e+00 2028
14 TraesCS1D01G056300 chr1B 90.411 292 27 1 3 293 57132775 57132484 1.390000e-102 383
15 TraesCS1D01G056300 chr1B 86.381 257 31 4 40 293 56491112 56491367 6.740000e-71 278
16 TraesCS1D01G056300 chr7D 98.316 475 7 1 293 766 1526595 1526121 0.000000e+00 832
17 TraesCS1D01G056300 chr7D 94.549 477 25 1 290 766 522867585 522868060 0.000000e+00 736
18 TraesCS1D01G056300 chr2D 94.969 477 23 1 290 766 462487106 462486631 0.000000e+00 747
19 TraesCS1D01G056300 chr2D 94.781 479 24 1 289 767 204265314 204265791 0.000000e+00 745
20 TraesCS1D01G056300 chr2D 93.483 491 29 3 283 772 633327365 633327853 0.000000e+00 726
21 TraesCS1D01G056300 chr2D 88.475 295 30 2 1 291 579330027 579329733 1.090000e-93 353
22 TraesCS1D01G056300 chr5D 94.606 482 25 1 285 766 486229014 486229494 0.000000e+00 745
23 TraesCS1D01G056300 chr3D 94.340 477 26 1 290 766 559476405 559476880 0.000000e+00 730
24 TraesCS1D01G056300 chr3D 93.483 491 29 3 284 773 93612036 93611548 0.000000e+00 726
25 TraesCS1D01G056300 chr4D 94.142 478 27 1 289 766 464309676 464310152 0.000000e+00 726
26 TraesCS1D01G056300 chr2A 89.456 294 26 3 3 291 717003449 717003156 1.400000e-97 366
27 TraesCS1D01G056300 chr2B 87.251 251 27 3 45 291 696656890 696656641 5.210000e-72 281


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G056300 chr1D 37430737 37433212 2475 True 4573.0 4573 100.0000 1 2476 1 chr1D.!!$R1 2475
1 TraesCS1D01G056300 chr1D 38581751 38583456 1705 False 1919.0 1919 86.9890 767 2476 1 chr1D.!!$F1 1709
2 TraesCS1D01G056300 chr1D 36615703 36617641 1938 False 1501.0 2715 91.8520 57 2476 2 chr1D.!!$F2 2419
3 TraesCS1D01G056300 chr1D 36622099 36624052 1953 False 1085.5 1888 86.7150 40 2476 2 chr1D.!!$F3 2436
4 TraesCS1D01G056300 chr1A 36186057 36187766 1709 False 2555.0 2555 93.6260 767 2476 1 chr1A.!!$F2 1709
5 TraesCS1D01G056300 chr1A 36172555 36174264 1709 False 2510.0 2510 93.1580 767 2476 1 chr1A.!!$F1 1709
6 TraesCS1D01G056300 chr1A 36613741 36615730 1989 True 1392.0 2276 94.3325 1 2476 2 chr1A.!!$R2 2475
7 TraesCS1D01G056300 chr1B 56618265 56619970 1705 False 2100.0 2100 88.8890 767 2475 1 chr1B.!!$F2 1708
8 TraesCS1D01G056300 chr1B 56499540 56501243 1703 False 2028.0 2028 88.1360 767 2476 1 chr1B.!!$F1 1709
9 TraesCS1D01G056300 chr1B 56491112 56493061 1949 False 1181.0 2084 87.5440 40 2475 2 chr1B.!!$F3 2435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 736 0.033699 AGCATTTGGAGAAGGGCCTC 60.034 55.0 6.46 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 1550 1.537562 CGGTGGTATTCTTCGGCCTAC 60.538 57.143 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 85 5.532406 AGCAATAAAACTGTGCTTTCTGAGA 59.468 36.000 0.00 0.00 46.25 3.27
122 125 6.072728 GCAATGTATCAACTAGTCAACCAACA 60.073 38.462 0.00 0.00 0.00 3.33
282 286 2.514824 GGCCTTGGCGATCTCACC 60.515 66.667 5.49 0.00 0.00 4.02
283 287 2.586792 GCCTTGGCGATCTCACCT 59.413 61.111 0.00 0.00 0.00 4.00
284 288 1.078143 GCCTTGGCGATCTCACCTT 60.078 57.895 0.00 0.00 0.00 3.50
285 289 0.678048 GCCTTGGCGATCTCACCTTT 60.678 55.000 0.00 0.00 0.00 3.11
286 290 1.826385 CCTTGGCGATCTCACCTTTT 58.174 50.000 0.00 0.00 0.00 2.27
287 291 2.162681 CCTTGGCGATCTCACCTTTTT 58.837 47.619 0.00 0.00 0.00 1.94
288 292 2.162408 CCTTGGCGATCTCACCTTTTTC 59.838 50.000 0.00 0.00 0.00 2.29
289 293 1.821216 TGGCGATCTCACCTTTTTCC 58.179 50.000 0.00 0.00 0.00 3.13
290 294 1.073125 TGGCGATCTCACCTTTTTCCA 59.927 47.619 0.00 0.00 0.00 3.53
291 295 2.159382 GGCGATCTCACCTTTTTCCAA 58.841 47.619 0.00 0.00 0.00 3.53
292 296 2.095212 GGCGATCTCACCTTTTTCCAAC 60.095 50.000 0.00 0.00 0.00 3.77
293 297 2.412847 GCGATCTCACCTTTTTCCAACG 60.413 50.000 0.00 0.00 0.00 4.10
294 298 3.064207 CGATCTCACCTTTTTCCAACGA 58.936 45.455 0.00 0.00 0.00 3.85
295 299 3.496884 CGATCTCACCTTTTTCCAACGAA 59.503 43.478 0.00 0.00 0.00 3.85
296 300 4.024387 CGATCTCACCTTTTTCCAACGAAA 60.024 41.667 0.00 0.00 36.18 3.46
297 301 5.504994 CGATCTCACCTTTTTCCAACGAAAA 60.505 40.000 0.00 0.00 44.38 2.29
318 322 3.290948 AAATAGCACCCTATTTCGCCA 57.709 42.857 3.53 0.00 46.28 5.69
319 323 3.508845 AATAGCACCCTATTTCGCCAT 57.491 42.857 0.00 0.00 40.49 4.40
320 324 3.508845 ATAGCACCCTATTTCGCCATT 57.491 42.857 0.00 0.00 29.98 3.16
321 325 4.634012 ATAGCACCCTATTTCGCCATTA 57.366 40.909 0.00 0.00 29.98 1.90
322 326 3.508845 AGCACCCTATTTCGCCATTAT 57.491 42.857 0.00 0.00 0.00 1.28
323 327 4.634012 AGCACCCTATTTCGCCATTATA 57.366 40.909 0.00 0.00 0.00 0.98
324 328 4.980573 AGCACCCTATTTCGCCATTATAA 58.019 39.130 0.00 0.00 0.00 0.98
325 329 4.760204 AGCACCCTATTTCGCCATTATAAC 59.240 41.667 0.00 0.00 0.00 1.89
326 330 4.378046 GCACCCTATTTCGCCATTATAACG 60.378 45.833 0.00 0.00 0.00 3.18
327 331 3.749609 ACCCTATTTCGCCATTATAACGC 59.250 43.478 0.00 0.00 0.00 4.84
329 333 2.961522 ATTTCGCCATTATAACGCGG 57.038 45.000 21.91 9.98 45.74 6.46
330 334 1.654317 TTTCGCCATTATAACGCGGT 58.346 45.000 21.91 6.42 45.74 5.68
331 335 1.654317 TTCGCCATTATAACGCGGTT 58.346 45.000 21.91 5.03 45.74 4.44
332 336 2.505628 TCGCCATTATAACGCGGTTA 57.494 45.000 21.91 7.35 45.74 2.85
333 337 3.029320 TCGCCATTATAACGCGGTTAT 57.971 42.857 21.91 14.16 45.74 1.89
334 338 4.171663 TCGCCATTATAACGCGGTTATA 57.828 40.909 21.91 13.18 45.74 0.98
335 339 4.168014 TCGCCATTATAACGCGGTTATAG 58.832 43.478 21.91 6.48 45.74 1.31
336 340 3.241868 CGCCATTATAACGCGGTTATAGC 60.242 47.826 12.47 13.70 40.54 2.97
337 341 3.680937 GCCATTATAACGCGGTTATAGCA 59.319 43.478 12.47 3.63 40.54 3.49
338 342 4.331717 GCCATTATAACGCGGTTATAGCAT 59.668 41.667 12.47 5.64 40.54 3.79
339 343 5.521010 GCCATTATAACGCGGTTATAGCATA 59.479 40.000 12.47 0.00 40.54 3.14
340 344 6.202188 GCCATTATAACGCGGTTATAGCATAT 59.798 38.462 12.47 4.71 40.54 1.78
341 345 7.254658 GCCATTATAACGCGGTTATAGCATATT 60.255 37.037 12.47 0.00 40.54 1.28
342 346 8.273557 CCATTATAACGCGGTTATAGCATATTC 58.726 37.037 12.47 0.00 40.54 1.75
343 347 5.944049 ATAACGCGGTTATAGCATATTCG 57.056 39.130 12.47 0.00 37.02 3.34
344 348 2.602878 ACGCGGTTATAGCATATTCGG 58.397 47.619 12.47 0.00 34.19 4.30
345 349 2.229543 ACGCGGTTATAGCATATTCGGA 59.770 45.455 12.47 0.00 34.19 4.55
346 350 3.247442 CGCGGTTATAGCATATTCGGAA 58.753 45.455 0.00 0.00 34.19 4.30
347 351 3.303495 CGCGGTTATAGCATATTCGGAAG 59.697 47.826 0.00 0.00 34.19 3.46
348 352 3.617263 GCGGTTATAGCATATTCGGAAGG 59.383 47.826 0.00 0.00 34.19 3.46
349 353 4.181578 CGGTTATAGCATATTCGGAAGGG 58.818 47.826 0.00 0.00 0.00 3.95
350 354 4.081862 CGGTTATAGCATATTCGGAAGGGA 60.082 45.833 0.00 0.00 0.00 4.20
351 355 5.420409 GGTTATAGCATATTCGGAAGGGAG 58.580 45.833 0.00 0.00 0.00 4.30
352 356 5.187186 GGTTATAGCATATTCGGAAGGGAGA 59.813 44.000 0.00 0.00 0.00 3.71
353 357 4.810191 ATAGCATATTCGGAAGGGAGAC 57.190 45.455 0.00 0.00 0.00 3.36
354 358 1.341531 AGCATATTCGGAAGGGAGACG 59.658 52.381 0.00 0.00 0.00 4.18
355 359 1.068741 GCATATTCGGAAGGGAGACGT 59.931 52.381 0.00 0.00 0.00 4.34
356 360 2.483188 GCATATTCGGAAGGGAGACGTT 60.483 50.000 0.00 0.00 42.01 3.99
357 361 3.243636 GCATATTCGGAAGGGAGACGTTA 60.244 47.826 0.00 0.00 38.82 3.18
358 362 2.955477 ATTCGGAAGGGAGACGTTAC 57.045 50.000 0.00 0.00 38.82 2.50
362 366 2.445565 GGAAGGGAGACGTTACGTTT 57.554 50.000 12.82 6.17 41.37 3.60
363 367 2.759191 GGAAGGGAGACGTTACGTTTT 58.241 47.619 12.82 3.52 41.37 2.43
364 368 2.477754 GGAAGGGAGACGTTACGTTTTG 59.522 50.000 12.82 0.00 41.37 2.44
365 369 2.159327 AGGGAGACGTTACGTTTTGG 57.841 50.000 12.82 0.00 41.37 3.28
366 370 0.514255 GGGAGACGTTACGTTTTGGC 59.486 55.000 12.82 0.00 41.37 4.52
367 371 1.219646 GGAGACGTTACGTTTTGGCA 58.780 50.000 12.82 0.00 41.37 4.92
368 372 1.598601 GGAGACGTTACGTTTTGGCAA 59.401 47.619 12.82 0.00 41.37 4.52
369 373 2.031930 GGAGACGTTACGTTTTGGCAAA 59.968 45.455 12.82 8.93 41.37 3.68
370 374 3.487209 GGAGACGTTACGTTTTGGCAAAA 60.487 43.478 20.81 20.81 41.37 2.44
371 375 4.284485 GAGACGTTACGTTTTGGCAAAAT 58.716 39.130 26.41 15.14 41.37 1.82
372 376 4.284485 AGACGTTACGTTTTGGCAAAATC 58.716 39.130 26.41 17.74 41.37 2.17
373 377 3.037324 ACGTTACGTTTTGGCAAAATCG 58.963 40.909 28.83 28.83 41.87 3.34
374 378 2.402378 CGTTACGTTTTGGCAAAATCGG 59.598 45.455 31.17 24.07 40.93 4.18
375 379 2.053282 TACGTTTTGGCAAAATCGGC 57.947 45.000 31.17 19.63 40.93 5.54
381 385 2.407616 GGCAAAATCGGCCGCTAC 59.592 61.111 23.51 6.05 42.39 3.58
382 386 2.022762 GCAAAATCGGCCGCTACG 59.977 61.111 23.51 8.73 0.00 3.51
394 398 4.412933 GCTACGGCGCTAATCACA 57.587 55.556 6.90 0.00 0.00 3.58
395 399 2.900528 GCTACGGCGCTAATCACAT 58.099 52.632 6.90 0.00 0.00 3.21
396 400 2.060326 GCTACGGCGCTAATCACATA 57.940 50.000 6.90 0.00 0.00 2.29
397 401 2.400399 GCTACGGCGCTAATCACATAA 58.600 47.619 6.90 0.00 0.00 1.90
398 402 2.993899 GCTACGGCGCTAATCACATAAT 59.006 45.455 6.90 0.00 0.00 1.28
399 403 3.432252 GCTACGGCGCTAATCACATAATT 59.568 43.478 6.90 0.00 0.00 1.40
400 404 4.624024 GCTACGGCGCTAATCACATAATTA 59.376 41.667 6.90 0.00 0.00 1.40
401 405 5.220228 GCTACGGCGCTAATCACATAATTAG 60.220 44.000 6.90 0.00 40.63 1.73
407 411 4.910746 CTAATCACATAATTAGCGCGCT 57.089 40.909 38.01 38.01 33.68 5.92
409 413 4.647291 AATCACATAATTAGCGCGCTAC 57.353 40.909 38.48 7.30 0.00 3.58
410 414 3.086818 TCACATAATTAGCGCGCTACA 57.913 42.857 38.48 27.91 0.00 2.74
411 415 2.792674 TCACATAATTAGCGCGCTACAC 59.207 45.455 38.48 6.42 0.00 2.90
412 416 2.538037 CACATAATTAGCGCGCTACACA 59.462 45.455 38.48 25.57 0.00 3.72
413 417 2.538449 ACATAATTAGCGCGCTACACAC 59.462 45.455 38.48 4.71 0.00 3.82
414 418 1.193644 TAATTAGCGCGCTACACACG 58.806 50.000 38.48 0.00 0.00 4.49
424 428 2.179589 CGCTACACACGCTATAACGTT 58.820 47.619 5.88 5.88 45.75 3.99
425 429 2.036004 CGCTACACACGCTATAACGTTG 60.036 50.000 11.99 4.29 45.75 4.10
426 430 2.919229 GCTACACACGCTATAACGTTGT 59.081 45.455 11.99 6.97 45.75 3.32
427 431 4.097714 GCTACACACGCTATAACGTTGTA 58.902 43.478 11.99 7.93 45.75 2.41
428 432 4.203764 GCTACACACGCTATAACGTTGTAG 59.796 45.833 25.98 25.98 45.75 2.74
429 433 2.919229 ACACACGCTATAACGTTGTAGC 59.081 45.455 34.30 34.30 45.75 3.58
443 447 6.683090 ACGTTGTAGCGTTATACGTTTTAA 57.317 33.333 13.79 0.00 44.73 1.52
444 448 6.513317 ACGTTGTAGCGTTATACGTTTTAAC 58.487 36.000 13.79 2.00 44.73 2.01
453 457 4.526152 CGTTTTAACGTGCAGGCC 57.474 55.556 6.26 0.00 46.63 5.19
454 458 1.649815 CGTTTTAACGTGCAGGCCA 59.350 52.632 5.01 0.00 46.63 5.36
455 459 0.239879 CGTTTTAACGTGCAGGCCAT 59.760 50.000 5.01 0.00 46.63 4.40
456 460 1.696988 GTTTTAACGTGCAGGCCATG 58.303 50.000 5.01 0.97 36.50 3.66
469 473 3.726607 CAGGCCATGCAAAACTAAAACA 58.273 40.909 5.01 0.00 0.00 2.83
470 474 4.125703 CAGGCCATGCAAAACTAAAACAA 58.874 39.130 5.01 0.00 0.00 2.83
471 475 4.024977 CAGGCCATGCAAAACTAAAACAAC 60.025 41.667 5.01 0.00 0.00 3.32
472 476 3.249799 GGCCATGCAAAACTAAAACAACC 59.750 43.478 0.00 0.00 0.00 3.77
473 477 3.873952 GCCATGCAAAACTAAAACAACCA 59.126 39.130 0.00 0.00 0.00 3.67
474 478 4.260579 GCCATGCAAAACTAAAACAACCAC 60.261 41.667 0.00 0.00 0.00 4.16
475 479 4.872691 CCATGCAAAACTAAAACAACCACA 59.127 37.500 0.00 0.00 0.00 4.17
476 480 5.006552 CCATGCAAAACTAAAACAACCACAG 59.993 40.000 0.00 0.00 0.00 3.66
477 481 3.929610 TGCAAAACTAAAACAACCACAGC 59.070 39.130 0.00 0.00 0.00 4.40
478 482 3.308595 GCAAAACTAAAACAACCACAGCC 59.691 43.478 0.00 0.00 0.00 4.85
479 483 3.812156 AAACTAAAACAACCACAGCCC 57.188 42.857 0.00 0.00 0.00 5.19
480 484 2.445682 ACTAAAACAACCACAGCCCA 57.554 45.000 0.00 0.00 0.00 5.36
481 485 2.306847 ACTAAAACAACCACAGCCCAG 58.693 47.619 0.00 0.00 0.00 4.45
482 486 1.000274 CTAAAACAACCACAGCCCAGC 60.000 52.381 0.00 0.00 0.00 4.85
483 487 1.685355 AAAACAACCACAGCCCAGCC 61.685 55.000 0.00 0.00 0.00 4.85
484 488 4.954970 ACAACCACAGCCCAGCCG 62.955 66.667 0.00 0.00 0.00 5.52
503 507 2.523902 CCCAGCAGGCCAAAACCA 60.524 61.111 5.01 0.00 0.00 3.67
504 508 2.139484 CCCAGCAGGCCAAAACCAA 61.139 57.895 5.01 0.00 0.00 3.67
505 509 1.069596 CCAGCAGGCCAAAACCAAC 59.930 57.895 5.01 0.00 0.00 3.77
506 510 1.069596 CAGCAGGCCAAAACCAACC 59.930 57.895 5.01 0.00 0.00 3.77
507 511 2.140138 AGCAGGCCAAAACCAACCC 61.140 57.895 5.01 0.00 0.00 4.11
508 512 2.439104 GCAGGCCAAAACCAACCCA 61.439 57.895 5.01 0.00 0.00 4.51
509 513 1.445518 CAGGCCAAAACCAACCCAC 59.554 57.895 5.01 0.00 0.00 4.61
510 514 2.131067 AGGCCAAAACCAACCCACG 61.131 57.895 5.01 0.00 0.00 4.94
511 515 2.128507 GGCCAAAACCAACCCACGA 61.129 57.895 0.00 0.00 0.00 4.35
512 516 1.066752 GCCAAAACCAACCCACGAC 59.933 57.895 0.00 0.00 0.00 4.34
513 517 1.737201 CCAAAACCAACCCACGACC 59.263 57.895 0.00 0.00 0.00 4.79
514 518 1.038130 CCAAAACCAACCCACGACCA 61.038 55.000 0.00 0.00 0.00 4.02
515 519 0.101579 CAAAACCAACCCACGACCAC 59.898 55.000 0.00 0.00 0.00 4.16
516 520 0.033894 AAAACCAACCCACGACCACT 60.034 50.000 0.00 0.00 0.00 4.00
517 521 0.838608 AAACCAACCCACGACCACTA 59.161 50.000 0.00 0.00 0.00 2.74
518 522 0.107268 AACCAACCCACGACCACTAC 59.893 55.000 0.00 0.00 0.00 2.73
519 523 1.004200 CCAACCCACGACCACTACC 60.004 63.158 0.00 0.00 0.00 3.18
520 524 1.477685 CCAACCCACGACCACTACCT 61.478 60.000 0.00 0.00 0.00 3.08
521 525 0.395312 CAACCCACGACCACTACCTT 59.605 55.000 0.00 0.00 0.00 3.50
522 526 1.134228 AACCCACGACCACTACCTTT 58.866 50.000 0.00 0.00 0.00 3.11
523 527 0.683412 ACCCACGACCACTACCTTTC 59.317 55.000 0.00 0.00 0.00 2.62
524 528 0.974383 CCCACGACCACTACCTTTCT 59.026 55.000 0.00 0.00 0.00 2.52
525 529 1.067071 CCCACGACCACTACCTTTCTC 60.067 57.143 0.00 0.00 0.00 2.87
526 530 1.616865 CCACGACCACTACCTTTCTCA 59.383 52.381 0.00 0.00 0.00 3.27
527 531 2.609737 CCACGACCACTACCTTTCTCAC 60.610 54.545 0.00 0.00 0.00 3.51
528 532 2.296471 CACGACCACTACCTTTCTCACT 59.704 50.000 0.00 0.00 0.00 3.41
529 533 2.557490 ACGACCACTACCTTTCTCACTC 59.443 50.000 0.00 0.00 0.00 3.51
530 534 2.820787 CGACCACTACCTTTCTCACTCT 59.179 50.000 0.00 0.00 0.00 3.24
531 535 3.256136 CGACCACTACCTTTCTCACTCTT 59.744 47.826 0.00 0.00 0.00 2.85
532 536 4.262079 CGACCACTACCTTTCTCACTCTTT 60.262 45.833 0.00 0.00 0.00 2.52
533 537 5.612351 GACCACTACCTTTCTCACTCTTTT 58.388 41.667 0.00 0.00 0.00 2.27
534 538 6.002653 ACCACTACCTTTCTCACTCTTTTT 57.997 37.500 0.00 0.00 0.00 1.94
535 539 7.133133 ACCACTACCTTTCTCACTCTTTTTA 57.867 36.000 0.00 0.00 0.00 1.52
536 540 7.746703 ACCACTACCTTTCTCACTCTTTTTAT 58.253 34.615 0.00 0.00 0.00 1.40
537 541 7.878644 ACCACTACCTTTCTCACTCTTTTTATC 59.121 37.037 0.00 0.00 0.00 1.75
538 542 8.097662 CCACTACCTTTCTCACTCTTTTTATCT 58.902 37.037 0.00 0.00 0.00 1.98
539 543 9.495572 CACTACCTTTCTCACTCTTTTTATCTT 57.504 33.333 0.00 0.00 0.00 2.40
540 544 9.495572 ACTACCTTTCTCACTCTTTTTATCTTG 57.504 33.333 0.00 0.00 0.00 3.02
541 545 9.712305 CTACCTTTCTCACTCTTTTTATCTTGA 57.288 33.333 0.00 0.00 0.00 3.02
542 546 8.980481 ACCTTTCTCACTCTTTTTATCTTGAA 57.020 30.769 0.00 0.00 0.00 2.69
543 547 9.408648 ACCTTTCTCACTCTTTTTATCTTGAAA 57.591 29.630 0.00 0.00 0.00 2.69
544 548 9.670719 CCTTTCTCACTCTTTTTATCTTGAAAC 57.329 33.333 0.00 0.00 0.00 2.78
547 551 8.964476 TCTCACTCTTTTTATCTTGAAACTGT 57.036 30.769 0.00 0.00 0.00 3.55
548 552 9.396022 TCTCACTCTTTTTATCTTGAAACTGTT 57.604 29.630 0.00 0.00 0.00 3.16
550 554 9.787532 TCACTCTTTTTATCTTGAAACTGTTTG 57.212 29.630 11.03 0.00 0.00 2.93
551 555 9.787532 CACTCTTTTTATCTTGAAACTGTTTGA 57.212 29.630 11.03 0.00 0.00 2.69
559 563 9.607988 TTATCTTGAAACTGTTTGAGACTTACA 57.392 29.630 11.03 0.00 0.00 2.41
560 564 7.915293 TCTTGAAACTGTTTGAGACTTACAA 57.085 32.000 11.03 5.24 0.00 2.41
561 565 8.506168 TCTTGAAACTGTTTGAGACTTACAAT 57.494 30.769 11.03 0.00 0.00 2.71
562 566 8.956426 TCTTGAAACTGTTTGAGACTTACAATT 58.044 29.630 11.03 0.00 0.00 2.32
563 567 9.573133 CTTGAAACTGTTTGAGACTTACAATTT 57.427 29.630 11.03 0.00 0.00 1.82
564 568 9.921637 TTGAAACTGTTTGAGACTTACAATTTT 57.078 25.926 11.03 0.00 0.00 1.82
565 569 9.921637 TGAAACTGTTTGAGACTTACAATTTTT 57.078 25.926 11.03 0.00 0.00 1.94
571 575 9.959749 TGTTTGAGACTTACAATTTTTATGTCC 57.040 29.630 5.46 0.75 32.27 4.02
582 586 7.555965 ACAATTTTTATGTCCTAGATTTGGCC 58.444 34.615 0.00 0.00 0.00 5.36
583 587 6.731292 ATTTTTATGTCCTAGATTTGGCCC 57.269 37.500 0.00 0.00 0.00 5.80
584 588 5.466127 TTTTATGTCCTAGATTTGGCCCT 57.534 39.130 0.00 0.00 0.00 5.19
585 589 5.466127 TTTATGTCCTAGATTTGGCCCTT 57.534 39.130 0.00 0.00 0.00 3.95
586 590 6.584471 TTTATGTCCTAGATTTGGCCCTTA 57.416 37.500 0.00 0.00 0.00 2.69
587 591 6.780198 TTATGTCCTAGATTTGGCCCTTAT 57.220 37.500 0.00 0.00 0.00 1.73
588 592 4.437682 TGTCCTAGATTTGGCCCTTATG 57.562 45.455 0.00 0.00 0.00 1.90
589 593 3.149981 GTCCTAGATTTGGCCCTTATGC 58.850 50.000 0.00 0.00 0.00 3.14
590 594 2.782925 TCCTAGATTTGGCCCTTATGCA 59.217 45.455 0.00 0.00 0.00 3.96
591 595 3.398967 TCCTAGATTTGGCCCTTATGCAT 59.601 43.478 3.79 3.79 0.00 3.96
592 596 4.601420 TCCTAGATTTGGCCCTTATGCATA 59.399 41.667 1.16 1.16 0.00 3.14
593 597 5.253798 TCCTAGATTTGGCCCTTATGCATAT 59.746 40.000 7.36 0.00 0.00 1.78
594 598 6.446759 TCCTAGATTTGGCCCTTATGCATATA 59.553 38.462 7.36 0.00 0.00 0.86
595 599 7.129349 TCCTAGATTTGGCCCTTATGCATATAT 59.871 37.037 7.36 0.00 0.00 0.86
596 600 7.781693 CCTAGATTTGGCCCTTATGCATATATT 59.218 37.037 7.36 0.00 0.00 1.28
597 601 7.414222 AGATTTGGCCCTTATGCATATATTG 57.586 36.000 7.36 0.00 0.00 1.90
613 617 7.750229 CATATATTGCTTGCTCCTAGGAAAA 57.250 36.000 13.77 9.47 0.00 2.29
614 618 8.169977 CATATATTGCTTGCTCCTAGGAAAAA 57.830 34.615 13.77 9.11 0.00 1.94
615 619 8.800332 CATATATTGCTTGCTCCTAGGAAAAAT 58.200 33.333 13.77 5.78 0.00 1.82
616 620 7.666063 ATATTGCTTGCTCCTAGGAAAAATT 57.334 32.000 13.77 0.00 0.00 1.82
617 621 5.806654 TTGCTTGCTCCTAGGAAAAATTT 57.193 34.783 13.77 0.00 0.00 1.82
618 622 6.909550 TTGCTTGCTCCTAGGAAAAATTTA 57.090 33.333 13.77 0.00 0.00 1.40
619 623 6.515272 TGCTTGCTCCTAGGAAAAATTTAG 57.485 37.500 13.77 0.00 0.00 1.85
620 624 6.010219 TGCTTGCTCCTAGGAAAAATTTAGT 58.990 36.000 13.77 0.00 0.00 2.24
621 625 6.493458 TGCTTGCTCCTAGGAAAAATTTAGTT 59.507 34.615 13.77 0.00 0.00 2.24
622 626 7.668052 TGCTTGCTCCTAGGAAAAATTTAGTTA 59.332 33.333 13.77 0.00 0.00 2.24
623 627 7.968956 GCTTGCTCCTAGGAAAAATTTAGTTAC 59.031 37.037 13.77 0.00 0.00 2.50
624 628 9.232473 CTTGCTCCTAGGAAAAATTTAGTTACT 57.768 33.333 13.77 0.00 0.00 2.24
625 629 9.582648 TTGCTCCTAGGAAAAATTTAGTTACTT 57.417 29.630 13.77 0.00 0.00 2.24
684 688 9.796120 TTTTGCAAACCCTATTTCGAAATATAG 57.204 29.630 26.39 22.02 31.03 1.31
685 689 6.966021 TGCAAACCCTATTTCGAAATATAGC 58.034 36.000 26.39 21.75 31.03 2.97
686 690 6.544197 TGCAAACCCTATTTCGAAATATAGCA 59.456 34.615 26.39 23.41 31.03 3.49
687 691 7.230510 TGCAAACCCTATTTCGAAATATAGCAT 59.769 33.333 26.39 13.21 31.03 3.79
688 692 7.538678 GCAAACCCTATTTCGAAATATAGCATG 59.461 37.037 26.39 21.88 31.03 4.06
689 693 6.743575 ACCCTATTTCGAAATATAGCATGC 57.256 37.500 26.39 10.51 31.03 4.06
690 694 6.476378 ACCCTATTTCGAAATATAGCATGCT 58.524 36.000 26.39 25.99 31.03 3.79
691 695 7.620880 ACCCTATTTCGAAATATAGCATGCTA 58.379 34.615 28.72 28.72 31.03 3.49
692 696 8.267894 ACCCTATTTCGAAATATAGCATGCTAT 58.732 33.333 35.68 35.68 41.58 2.97
693 697 9.113838 CCCTATTTCGAAATATAGCATGCTATT 57.886 33.333 37.80 24.84 39.65 1.73
697 701 6.812481 TCGAAATATAGCATGCTATTAGCG 57.188 37.500 37.80 31.66 46.26 4.26
698 702 5.232202 TCGAAATATAGCATGCTATTAGCGC 59.768 40.000 37.80 23.74 46.26 5.92
699 703 5.395325 AAATATAGCATGCTATTAGCGCG 57.605 39.130 37.80 0.00 46.26 6.86
700 704 1.002366 ATAGCATGCTATTAGCGCGC 58.998 50.000 30.43 26.66 46.26 6.86
701 705 1.301244 AGCATGCTATTAGCGCGCT 60.301 52.632 38.01 38.01 46.26 5.92
702 706 0.038251 AGCATGCTATTAGCGCGCTA 60.038 50.000 35.48 35.48 45.58 4.26
703 707 1.002366 GCATGCTATTAGCGCGCTAT 58.998 50.000 38.51 28.44 46.26 2.97
704 708 2.159240 AGCATGCTATTAGCGCGCTATA 60.159 45.455 38.51 28.09 45.58 1.31
705 709 2.603110 GCATGCTATTAGCGCGCTATAA 59.397 45.455 38.51 28.25 46.26 0.98
706 710 3.542291 GCATGCTATTAGCGCGCTATAAC 60.542 47.826 38.51 27.00 46.26 1.89
707 711 3.570926 TGCTATTAGCGCGCTATAACT 57.429 42.857 38.51 24.85 46.26 2.24
708 712 3.909430 TGCTATTAGCGCGCTATAACTT 58.091 40.909 38.51 22.78 46.26 2.66
709 713 3.673338 TGCTATTAGCGCGCTATAACTTG 59.327 43.478 38.51 24.56 46.26 3.16
710 714 3.673809 GCTATTAGCGCGCTATAACTTGT 59.326 43.478 38.51 20.48 0.00 3.16
711 715 4.433022 GCTATTAGCGCGCTATAACTTGTG 60.433 45.833 38.51 22.32 0.00 3.33
712 716 2.572191 TAGCGCGCTATAACTTGTGT 57.428 45.000 35.48 11.63 0.00 3.72
713 717 2.572191 AGCGCGCTATAACTTGTGTA 57.428 45.000 35.79 0.00 0.00 2.90
714 718 2.460918 AGCGCGCTATAACTTGTGTAG 58.539 47.619 35.79 0.00 0.00 2.74
715 719 1.071436 GCGCGCTATAACTTGTGTAGC 60.071 52.381 26.67 7.79 42.08 3.58
716 720 2.190161 CGCGCTATAACTTGTGTAGCA 58.810 47.619 5.56 0.00 44.89 3.49
717 721 2.794910 CGCGCTATAACTTGTGTAGCAT 59.205 45.455 5.56 0.00 44.89 3.79
718 722 3.245284 CGCGCTATAACTTGTGTAGCATT 59.755 43.478 5.56 0.00 44.89 3.56
719 723 4.260212 CGCGCTATAACTTGTGTAGCATTT 60.260 41.667 5.56 0.00 44.89 2.32
720 724 4.963953 GCGCTATAACTTGTGTAGCATTTG 59.036 41.667 0.00 4.34 44.89 2.32
721 725 5.501715 CGCTATAACTTGTGTAGCATTTGG 58.498 41.667 14.40 0.76 44.89 3.28
722 726 5.293324 CGCTATAACTTGTGTAGCATTTGGA 59.707 40.000 14.40 0.00 44.89 3.53
723 727 6.510157 CGCTATAACTTGTGTAGCATTTGGAG 60.510 42.308 14.40 0.00 44.89 3.86
724 728 6.538742 GCTATAACTTGTGTAGCATTTGGAGA 59.461 38.462 11.18 0.00 44.25 3.71
725 729 7.065803 GCTATAACTTGTGTAGCATTTGGAGAA 59.934 37.037 11.18 0.00 44.25 2.87
726 730 5.695851 AACTTGTGTAGCATTTGGAGAAG 57.304 39.130 0.00 0.00 0.00 2.85
727 731 4.074970 ACTTGTGTAGCATTTGGAGAAGG 58.925 43.478 0.00 0.00 0.00 3.46
728 732 3.071874 TGTGTAGCATTTGGAGAAGGG 57.928 47.619 0.00 0.00 0.00 3.95
729 733 1.745653 GTGTAGCATTTGGAGAAGGGC 59.254 52.381 0.00 0.00 0.00 5.19
730 734 1.340991 TGTAGCATTTGGAGAAGGGCC 60.341 52.381 0.00 0.00 0.00 5.80
731 735 1.064389 GTAGCATTTGGAGAAGGGCCT 60.064 52.381 0.00 0.00 0.00 5.19
732 736 0.033699 AGCATTTGGAGAAGGGCCTC 60.034 55.000 6.46 0.00 0.00 4.70
733 737 1.379642 GCATTTGGAGAAGGGCCTCG 61.380 60.000 6.46 0.00 34.08 4.63
734 738 1.077429 ATTTGGAGAAGGGCCTCGC 60.077 57.895 6.46 1.59 34.08 5.03
735 739 1.566298 ATTTGGAGAAGGGCCTCGCT 61.566 55.000 6.46 7.69 34.08 4.93
736 740 0.907704 TTTGGAGAAGGGCCTCGCTA 60.908 55.000 6.46 0.00 34.08 4.26
737 741 0.691078 TTGGAGAAGGGCCTCGCTAT 60.691 55.000 6.46 0.00 34.08 2.97
738 742 0.187606 TGGAGAAGGGCCTCGCTATA 59.812 55.000 6.46 0.00 34.08 1.31
739 743 1.203187 TGGAGAAGGGCCTCGCTATAT 60.203 52.381 6.46 0.00 34.08 0.86
740 744 1.903183 GGAGAAGGGCCTCGCTATATT 59.097 52.381 6.46 0.00 34.08 1.28
741 745 2.303311 GGAGAAGGGCCTCGCTATATTT 59.697 50.000 6.46 0.00 34.08 1.40
742 746 3.244596 GGAGAAGGGCCTCGCTATATTTT 60.245 47.826 6.46 0.00 34.08 1.82
743 747 3.744660 AGAAGGGCCTCGCTATATTTTG 58.255 45.455 6.46 0.00 0.00 2.44
744 748 3.136626 AGAAGGGCCTCGCTATATTTTGT 59.863 43.478 6.46 0.00 0.00 2.83
745 749 4.347000 AGAAGGGCCTCGCTATATTTTGTA 59.653 41.667 6.46 0.00 0.00 2.41
746 750 4.273148 AGGGCCTCGCTATATTTTGTAG 57.727 45.455 0.00 0.00 0.00 2.74
747 751 2.742589 GGGCCTCGCTATATTTTGTAGC 59.257 50.000 0.84 0.00 40.83 3.58
754 758 4.842139 GCTATATTTTGTAGCGCGCTAT 57.158 40.909 39.99 28.03 35.68 2.97
755 759 5.204673 GCTATATTTTGTAGCGCGCTATT 57.795 39.130 39.99 24.33 35.68 1.73
756 760 5.618561 GCTATATTTTGTAGCGCGCTATTT 58.381 37.500 39.99 23.11 35.68 1.40
757 761 6.077838 GCTATATTTTGTAGCGCGCTATTTT 58.922 36.000 39.99 24.95 35.68 1.82
758 762 6.577427 GCTATATTTTGTAGCGCGCTATTTTT 59.423 34.615 39.99 25.58 35.68 1.94
784 788 4.094146 CGTTGCCTTTTTCCAACAACAATT 59.906 37.500 0.00 0.00 40.93 2.32
1555 1559 1.349688 AGAACACAATGGTAGGCCGAA 59.650 47.619 0.00 0.00 37.67 4.30
1580 1584 5.818136 ATACCACCGTTCATCATTTCAAG 57.182 39.130 0.00 0.00 0.00 3.02
1659 1663 3.070446 AGTGATAAACAGTTGTGTCCGGA 59.930 43.478 0.00 0.00 35.08 5.14
1946 1950 3.355378 CTTCACTGGCATACCCATGAAA 58.645 45.455 0.00 0.00 44.33 2.69
2089 2096 7.076446 AGTGACAATATCTGGTATAAGGTCCT 58.924 38.462 0.00 0.00 0.00 3.85
2185 2192 9.579932 TGCAATTATATGTCACATTATTGGGTA 57.420 29.630 15.89 0.00 0.00 3.69
2252 2259 1.248785 ATTGCTCTGGCCTTGCACAG 61.249 55.000 15.34 0.00 36.37 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 104 5.919755 TGTGTTGGTTGACTAGTTGATACA 58.080 37.500 0.00 0.00 0.00 2.29
122 125 6.266168 TGCCAAGTATCAATTTTTCGATGT 57.734 33.333 0.00 0.00 0.00 3.06
162 166 6.969043 TCAAGGAAAGGCAAATATAAGGAGA 58.031 36.000 0.00 0.00 0.00 3.71
296 300 4.020543 TGGCGAAATAGGGTGCTATTTTT 58.979 39.130 0.00 0.00 38.98 1.94
297 301 3.626930 TGGCGAAATAGGGTGCTATTTT 58.373 40.909 0.00 0.00 38.98 1.82
298 302 3.290948 TGGCGAAATAGGGTGCTATTT 57.709 42.857 0.00 0.00 40.84 1.40
299 303 3.508845 ATGGCGAAATAGGGTGCTATT 57.491 42.857 0.00 0.00 0.00 1.73
300 304 3.508845 AATGGCGAAATAGGGTGCTAT 57.491 42.857 0.00 0.00 0.00 2.97
301 305 4.634012 ATAATGGCGAAATAGGGTGCTA 57.366 40.909 0.00 0.00 0.00 3.49
302 306 3.508845 ATAATGGCGAAATAGGGTGCT 57.491 42.857 0.00 0.00 0.00 4.40
303 307 4.378046 CGTTATAATGGCGAAATAGGGTGC 60.378 45.833 0.00 0.00 0.00 5.01
304 308 4.378046 GCGTTATAATGGCGAAATAGGGTG 60.378 45.833 6.81 0.00 0.00 4.61
305 309 3.749609 GCGTTATAATGGCGAAATAGGGT 59.250 43.478 6.81 0.00 0.00 4.34
306 310 4.336532 GCGTTATAATGGCGAAATAGGG 57.663 45.455 6.81 0.00 0.00 3.53
315 319 3.680937 TGCTATAACCGCGTTATAATGGC 59.319 43.478 4.92 12.75 39.49 4.40
316 320 7.709269 ATATGCTATAACCGCGTTATAATGG 57.291 36.000 4.92 3.72 39.49 3.16
317 321 7.996551 CGAATATGCTATAACCGCGTTATAATG 59.003 37.037 4.92 0.00 39.49 1.90
318 322 7.168637 CCGAATATGCTATAACCGCGTTATAAT 59.831 37.037 4.92 7.79 39.49 1.28
319 323 6.473131 CCGAATATGCTATAACCGCGTTATAA 59.527 38.462 4.92 1.10 39.49 0.98
320 324 5.972973 CCGAATATGCTATAACCGCGTTATA 59.027 40.000 4.92 12.18 39.18 0.98
321 325 4.802039 CCGAATATGCTATAACCGCGTTAT 59.198 41.667 4.92 11.68 41.02 1.89
322 326 4.082841 TCCGAATATGCTATAACCGCGTTA 60.083 41.667 4.92 4.43 32.36 3.18
323 327 2.991190 CCGAATATGCTATAACCGCGTT 59.009 45.455 4.92 1.95 0.00 4.84
324 328 2.229543 TCCGAATATGCTATAACCGCGT 59.770 45.455 4.92 0.00 0.00 6.01
325 329 2.871133 TCCGAATATGCTATAACCGCG 58.129 47.619 0.00 0.00 0.00 6.46
326 330 3.617263 CCTTCCGAATATGCTATAACCGC 59.383 47.826 0.00 0.00 0.00 5.68
327 331 4.081862 TCCCTTCCGAATATGCTATAACCG 60.082 45.833 0.00 0.00 0.00 4.44
328 332 5.187186 TCTCCCTTCCGAATATGCTATAACC 59.813 44.000 0.00 0.00 0.00 2.85
329 333 6.100668 GTCTCCCTTCCGAATATGCTATAAC 58.899 44.000 0.00 0.00 0.00 1.89
330 334 5.105877 CGTCTCCCTTCCGAATATGCTATAA 60.106 44.000 0.00 0.00 0.00 0.98
331 335 4.398358 CGTCTCCCTTCCGAATATGCTATA 59.602 45.833 0.00 0.00 0.00 1.31
332 336 3.193691 CGTCTCCCTTCCGAATATGCTAT 59.806 47.826 0.00 0.00 0.00 2.97
333 337 2.557056 CGTCTCCCTTCCGAATATGCTA 59.443 50.000 0.00 0.00 0.00 3.49
334 338 1.341531 CGTCTCCCTTCCGAATATGCT 59.658 52.381 0.00 0.00 0.00 3.79
335 339 1.068741 ACGTCTCCCTTCCGAATATGC 59.931 52.381 0.00 0.00 0.00 3.14
336 340 3.454371 AACGTCTCCCTTCCGAATATG 57.546 47.619 0.00 0.00 0.00 1.78
337 341 3.004106 CGTAACGTCTCCCTTCCGAATAT 59.996 47.826 0.00 0.00 0.00 1.28
338 342 2.355756 CGTAACGTCTCCCTTCCGAATA 59.644 50.000 0.00 0.00 0.00 1.75
339 343 1.133790 CGTAACGTCTCCCTTCCGAAT 59.866 52.381 0.00 0.00 0.00 3.34
340 344 0.523072 CGTAACGTCTCCCTTCCGAA 59.477 55.000 0.00 0.00 0.00 4.30
341 345 0.606401 ACGTAACGTCTCCCTTCCGA 60.606 55.000 0.00 0.00 33.69 4.55
342 346 0.242017 AACGTAACGTCTCCCTTCCG 59.758 55.000 0.00 0.00 39.99 4.30
343 347 2.445565 AAACGTAACGTCTCCCTTCC 57.554 50.000 0.00 0.00 39.99 3.46
344 348 2.477754 CCAAAACGTAACGTCTCCCTTC 59.522 50.000 0.00 0.00 39.99 3.46
345 349 2.486918 CCAAAACGTAACGTCTCCCTT 58.513 47.619 0.00 0.00 39.99 3.95
346 350 1.875157 GCCAAAACGTAACGTCTCCCT 60.875 52.381 0.00 0.00 39.99 4.20
347 351 0.514255 GCCAAAACGTAACGTCTCCC 59.486 55.000 0.00 0.00 39.99 4.30
348 352 1.219646 TGCCAAAACGTAACGTCTCC 58.780 50.000 0.00 0.00 39.99 3.71
349 353 3.322230 TTTGCCAAAACGTAACGTCTC 57.678 42.857 0.00 0.00 39.99 3.36
350 354 3.761311 TTTTGCCAAAACGTAACGTCT 57.239 38.095 0.00 0.00 39.99 4.18
351 355 3.116700 CGATTTTGCCAAAACGTAACGTC 59.883 43.478 4.45 0.00 39.99 4.34
352 356 3.037324 CGATTTTGCCAAAACGTAACGT 58.963 40.909 4.45 0.00 43.97 3.99
353 357 2.402378 CCGATTTTGCCAAAACGTAACG 59.598 45.455 4.45 6.54 32.37 3.18
354 358 2.154198 GCCGATTTTGCCAAAACGTAAC 59.846 45.455 4.45 0.91 32.37 2.50
355 359 2.395654 GCCGATTTTGCCAAAACGTAA 58.604 42.857 4.45 0.00 32.37 3.18
356 360 2.053282 GCCGATTTTGCCAAAACGTA 57.947 45.000 4.45 0.00 32.37 3.57
357 361 2.893671 GCCGATTTTGCCAAAACGT 58.106 47.368 4.45 0.00 32.37 3.99
364 368 2.407616 GTAGCGGCCGATTTTGCC 59.592 61.111 33.48 9.31 45.70 4.52
365 369 2.022762 CGTAGCGGCCGATTTTGC 59.977 61.111 33.48 10.17 0.00 3.68
366 370 2.707039 CCGTAGCGGCCGATTTTG 59.293 61.111 33.48 16.00 41.17 2.44
377 381 2.060326 TATGTGATTAGCGCCGTAGC 57.940 50.000 2.29 0.00 37.41 3.58
378 382 6.319229 CTAATTATGTGATTAGCGCCGTAG 57.681 41.667 2.29 0.00 34.05 3.51
386 390 4.910746 AGCGCGCTAATTATGTGATTAG 57.089 40.909 35.79 1.40 40.80 1.73
387 391 5.118050 GTGTAGCGCGCTAATTATGTGATTA 59.882 40.000 39.73 15.04 0.00 1.75
388 392 4.055360 TGTAGCGCGCTAATTATGTGATT 58.945 39.130 39.73 14.16 0.00 2.57
389 393 3.428870 GTGTAGCGCGCTAATTATGTGAT 59.571 43.478 39.73 14.38 0.00 3.06
390 394 2.792674 GTGTAGCGCGCTAATTATGTGA 59.207 45.455 39.73 16.67 0.00 3.58
391 395 2.538037 TGTGTAGCGCGCTAATTATGTG 59.462 45.455 39.73 0.00 0.00 3.21
392 396 2.538449 GTGTGTAGCGCGCTAATTATGT 59.462 45.455 39.73 16.53 0.00 2.29
393 397 2.408487 CGTGTGTAGCGCGCTAATTATG 60.408 50.000 39.73 27.21 44.35 1.90
394 398 1.784856 CGTGTGTAGCGCGCTAATTAT 59.215 47.619 39.73 18.14 44.35 1.28
395 399 1.193644 CGTGTGTAGCGCGCTAATTA 58.806 50.000 39.73 26.04 44.35 1.40
396 400 1.995991 CGTGTGTAGCGCGCTAATT 59.004 52.632 39.73 19.37 44.35 1.40
397 401 3.688136 CGTGTGTAGCGCGCTAAT 58.312 55.556 39.73 19.77 44.35 1.73
404 408 1.818850 ACGTTATAGCGTGTGTAGCG 58.181 50.000 14.14 0.00 43.99 4.26
405 409 2.919229 ACAACGTTATAGCGTGTGTAGC 59.081 45.455 15.60 0.00 45.00 3.58
406 410 4.203764 GCTACAACGTTATAGCGTGTGTAG 59.796 45.833 31.25 31.25 45.46 2.74
407 411 4.097714 GCTACAACGTTATAGCGTGTGTA 58.902 43.478 21.62 20.12 45.00 2.90
408 412 2.919229 GCTACAACGTTATAGCGTGTGT 59.081 45.455 21.62 22.53 45.00 3.72
409 413 3.548216 GCTACAACGTTATAGCGTGTG 57.452 47.619 21.62 16.16 45.00 3.82
437 441 1.696988 CATGGCCTGCACGTTAAAAC 58.303 50.000 3.32 0.00 0.00 2.43
448 452 3.726607 TGTTTTAGTTTTGCATGGCCTG 58.273 40.909 3.32 0.34 0.00 4.85
449 453 4.126437 GTTGTTTTAGTTTTGCATGGCCT 58.874 39.130 3.32 0.00 0.00 5.19
450 454 3.249799 GGTTGTTTTAGTTTTGCATGGCC 59.750 43.478 0.00 0.00 0.00 5.36
451 455 3.873952 TGGTTGTTTTAGTTTTGCATGGC 59.126 39.130 0.00 0.00 0.00 4.40
452 456 4.872691 TGTGGTTGTTTTAGTTTTGCATGG 59.127 37.500 0.00 0.00 0.00 3.66
453 457 5.502220 GCTGTGGTTGTTTTAGTTTTGCATG 60.502 40.000 0.00 0.00 0.00 4.06
454 458 4.570369 GCTGTGGTTGTTTTAGTTTTGCAT 59.430 37.500 0.00 0.00 0.00 3.96
455 459 3.929610 GCTGTGGTTGTTTTAGTTTTGCA 59.070 39.130 0.00 0.00 0.00 4.08
456 460 3.308595 GGCTGTGGTTGTTTTAGTTTTGC 59.691 43.478 0.00 0.00 0.00 3.68
457 461 3.868661 GGGCTGTGGTTGTTTTAGTTTTG 59.131 43.478 0.00 0.00 0.00 2.44
458 462 3.515901 TGGGCTGTGGTTGTTTTAGTTTT 59.484 39.130 0.00 0.00 0.00 2.43
459 463 3.100671 TGGGCTGTGGTTGTTTTAGTTT 58.899 40.909 0.00 0.00 0.00 2.66
460 464 2.693074 CTGGGCTGTGGTTGTTTTAGTT 59.307 45.455 0.00 0.00 0.00 2.24
461 465 2.306847 CTGGGCTGTGGTTGTTTTAGT 58.693 47.619 0.00 0.00 0.00 2.24
462 466 1.000274 GCTGGGCTGTGGTTGTTTTAG 60.000 52.381 0.00 0.00 0.00 1.85
463 467 1.036707 GCTGGGCTGTGGTTGTTTTA 58.963 50.000 0.00 0.00 0.00 1.52
464 468 1.685355 GGCTGGGCTGTGGTTGTTTT 61.685 55.000 0.00 0.00 0.00 2.43
465 469 2.133641 GGCTGGGCTGTGGTTGTTT 61.134 57.895 0.00 0.00 0.00 2.83
466 470 2.521708 GGCTGGGCTGTGGTTGTT 60.522 61.111 0.00 0.00 0.00 2.83
467 471 4.954970 CGGCTGGGCTGTGGTTGT 62.955 66.667 0.00 0.00 0.00 3.32
486 490 2.139484 TTGGTTTTGGCCTGCTGGG 61.139 57.895 12.06 1.66 38.36 4.45
487 491 1.069596 GTTGGTTTTGGCCTGCTGG 59.930 57.895 3.32 5.03 0.00 4.85
488 492 1.069596 GGTTGGTTTTGGCCTGCTG 59.930 57.895 3.32 0.00 0.00 4.41
489 493 2.140138 GGGTTGGTTTTGGCCTGCT 61.140 57.895 3.32 0.00 0.00 4.24
490 494 2.425592 GGGTTGGTTTTGGCCTGC 59.574 61.111 3.32 0.00 0.00 4.85
491 495 1.445518 GTGGGTTGGTTTTGGCCTG 59.554 57.895 3.32 0.00 0.00 4.85
492 496 2.131067 CGTGGGTTGGTTTTGGCCT 61.131 57.895 3.32 0.00 0.00 5.19
493 497 2.128507 TCGTGGGTTGGTTTTGGCC 61.129 57.895 0.00 0.00 0.00 5.36
494 498 1.066752 GTCGTGGGTTGGTTTTGGC 59.933 57.895 0.00 0.00 0.00 4.52
495 499 1.038130 TGGTCGTGGGTTGGTTTTGG 61.038 55.000 0.00 0.00 0.00 3.28
496 500 0.101579 GTGGTCGTGGGTTGGTTTTG 59.898 55.000 0.00 0.00 0.00 2.44
497 501 0.033894 AGTGGTCGTGGGTTGGTTTT 60.034 50.000 0.00 0.00 0.00 2.43
498 502 0.838608 TAGTGGTCGTGGGTTGGTTT 59.161 50.000 0.00 0.00 0.00 3.27
499 503 0.107268 GTAGTGGTCGTGGGTTGGTT 59.893 55.000 0.00 0.00 0.00 3.67
500 504 1.750297 GTAGTGGTCGTGGGTTGGT 59.250 57.895 0.00 0.00 0.00 3.67
501 505 1.004200 GGTAGTGGTCGTGGGTTGG 60.004 63.158 0.00 0.00 0.00 3.77
502 506 0.395312 AAGGTAGTGGTCGTGGGTTG 59.605 55.000 0.00 0.00 0.00 3.77
503 507 1.071228 GAAAGGTAGTGGTCGTGGGTT 59.929 52.381 0.00 0.00 0.00 4.11
504 508 0.683412 GAAAGGTAGTGGTCGTGGGT 59.317 55.000 0.00 0.00 0.00 4.51
505 509 0.974383 AGAAAGGTAGTGGTCGTGGG 59.026 55.000 0.00 0.00 0.00 4.61
506 510 1.616865 TGAGAAAGGTAGTGGTCGTGG 59.383 52.381 0.00 0.00 0.00 4.94
507 511 2.296471 AGTGAGAAAGGTAGTGGTCGTG 59.704 50.000 0.00 0.00 0.00 4.35
508 512 2.557490 GAGTGAGAAAGGTAGTGGTCGT 59.443 50.000 0.00 0.00 0.00 4.34
509 513 2.820787 AGAGTGAGAAAGGTAGTGGTCG 59.179 50.000 0.00 0.00 0.00 4.79
510 514 4.875561 AAGAGTGAGAAAGGTAGTGGTC 57.124 45.455 0.00 0.00 0.00 4.02
511 515 5.632034 AAAAGAGTGAGAAAGGTAGTGGT 57.368 39.130 0.00 0.00 0.00 4.16
512 516 8.097662 AGATAAAAAGAGTGAGAAAGGTAGTGG 58.902 37.037 0.00 0.00 0.00 4.00
513 517 9.495572 AAGATAAAAAGAGTGAGAAAGGTAGTG 57.504 33.333 0.00 0.00 0.00 2.74
514 518 9.495572 CAAGATAAAAAGAGTGAGAAAGGTAGT 57.504 33.333 0.00 0.00 0.00 2.73
515 519 9.712305 TCAAGATAAAAAGAGTGAGAAAGGTAG 57.288 33.333 0.00 0.00 0.00 3.18
517 521 8.980481 TTCAAGATAAAAAGAGTGAGAAAGGT 57.020 30.769 0.00 0.00 0.00 3.50
518 522 9.670719 GTTTCAAGATAAAAAGAGTGAGAAAGG 57.329 33.333 0.00 0.00 0.00 3.11
521 525 9.396022 ACAGTTTCAAGATAAAAAGAGTGAGAA 57.604 29.630 0.00 0.00 0.00 2.87
522 526 8.964476 ACAGTTTCAAGATAAAAAGAGTGAGA 57.036 30.769 0.00 0.00 0.00 3.27
524 528 9.787532 CAAACAGTTTCAAGATAAAAAGAGTGA 57.212 29.630 0.00 0.00 0.00 3.41
525 529 9.787532 TCAAACAGTTTCAAGATAAAAAGAGTG 57.212 29.630 0.00 0.00 0.00 3.51
533 537 9.607988 TGTAAGTCTCAAACAGTTTCAAGATAA 57.392 29.630 9.76 0.00 0.00 1.75
534 538 9.607988 TTGTAAGTCTCAAACAGTTTCAAGATA 57.392 29.630 9.76 0.16 0.00 1.98
535 539 8.506168 TTGTAAGTCTCAAACAGTTTCAAGAT 57.494 30.769 9.76 0.88 0.00 2.40
536 540 7.915293 TTGTAAGTCTCAAACAGTTTCAAGA 57.085 32.000 0.00 0.00 0.00 3.02
537 541 9.573133 AAATTGTAAGTCTCAAACAGTTTCAAG 57.427 29.630 0.00 0.00 30.19 3.02
538 542 9.921637 AAAATTGTAAGTCTCAAACAGTTTCAA 57.078 25.926 0.00 0.00 33.57 2.69
539 543 9.921637 AAAAATTGTAAGTCTCAAACAGTTTCA 57.078 25.926 0.00 0.00 33.57 2.69
545 549 9.959749 GGACATAAAAATTGTAAGTCTCAAACA 57.040 29.630 0.00 0.00 0.00 2.83
556 560 8.691797 GGCCAAATCTAGGACATAAAAATTGTA 58.308 33.333 0.00 0.00 33.02 2.41
557 561 7.364673 GGGCCAAATCTAGGACATAAAAATTGT 60.365 37.037 4.39 0.00 35.15 2.71
558 562 6.986231 GGGCCAAATCTAGGACATAAAAATTG 59.014 38.462 4.39 0.00 35.15 2.32
559 563 6.902974 AGGGCCAAATCTAGGACATAAAAATT 59.097 34.615 6.18 0.00 35.15 1.82
560 564 6.443832 AGGGCCAAATCTAGGACATAAAAAT 58.556 36.000 6.18 0.00 35.15 1.82
561 565 5.837829 AGGGCCAAATCTAGGACATAAAAA 58.162 37.500 6.18 0.00 35.15 1.94
562 566 5.466127 AGGGCCAAATCTAGGACATAAAA 57.534 39.130 6.18 0.00 35.15 1.52
563 567 5.466127 AAGGGCCAAATCTAGGACATAAA 57.534 39.130 6.18 0.00 35.15 1.40
564 568 6.542821 CATAAGGGCCAAATCTAGGACATAA 58.457 40.000 6.18 0.00 35.15 1.90
565 569 5.514834 GCATAAGGGCCAAATCTAGGACATA 60.515 44.000 6.18 0.00 35.15 2.29
566 570 4.751028 GCATAAGGGCCAAATCTAGGACAT 60.751 45.833 6.18 0.00 35.15 3.06
567 571 3.435026 GCATAAGGGCCAAATCTAGGACA 60.435 47.826 6.18 0.00 35.15 4.02
568 572 3.149981 GCATAAGGGCCAAATCTAGGAC 58.850 50.000 6.18 0.00 0.00 3.85
569 573 2.782925 TGCATAAGGGCCAAATCTAGGA 59.217 45.455 6.18 0.00 0.00 2.94
570 574 3.228188 TGCATAAGGGCCAAATCTAGG 57.772 47.619 6.18 0.00 0.00 3.02
571 575 8.627403 CAATATATGCATAAGGGCCAAATCTAG 58.373 37.037 11.13 0.00 0.00 2.43
572 576 8.523915 CAATATATGCATAAGGGCCAAATCTA 57.476 34.615 11.13 0.00 0.00 1.98
573 577 7.414222 CAATATATGCATAAGGGCCAAATCT 57.586 36.000 11.13 0.00 0.00 2.40
589 593 7.750229 TTTTCCTAGGAGCAAGCAATATATG 57.250 36.000 12.26 0.00 0.00 1.78
590 594 8.946797 ATTTTTCCTAGGAGCAAGCAATATAT 57.053 30.769 12.26 0.00 0.00 0.86
591 595 8.766994 AATTTTTCCTAGGAGCAAGCAATATA 57.233 30.769 12.26 0.00 0.00 0.86
592 596 7.666063 AATTTTTCCTAGGAGCAAGCAATAT 57.334 32.000 12.26 0.49 0.00 1.28
593 597 7.480760 AAATTTTTCCTAGGAGCAAGCAATA 57.519 32.000 12.26 0.00 0.00 1.90
594 598 6.364568 AAATTTTTCCTAGGAGCAAGCAAT 57.635 33.333 12.26 0.00 0.00 3.56
595 599 5.806654 AAATTTTTCCTAGGAGCAAGCAA 57.193 34.783 12.26 0.00 0.00 3.91
596 600 6.010219 ACTAAATTTTTCCTAGGAGCAAGCA 58.990 36.000 12.26 0.00 0.00 3.91
597 601 6.516739 ACTAAATTTTTCCTAGGAGCAAGC 57.483 37.500 12.26 0.00 0.00 4.01
598 602 9.232473 AGTAACTAAATTTTTCCTAGGAGCAAG 57.768 33.333 12.26 6.68 0.00 4.01
599 603 9.582648 AAGTAACTAAATTTTTCCTAGGAGCAA 57.417 29.630 12.26 9.26 0.00 3.91
658 662 9.796120 CTATATTTCGAAATAGGGTTTGCAAAA 57.204 29.630 28.80 9.54 34.62 2.44
659 663 7.918562 GCTATATTTCGAAATAGGGTTTGCAAA 59.081 33.333 28.80 8.05 34.62 3.68
660 664 7.067615 TGCTATATTTCGAAATAGGGTTTGCAA 59.932 33.333 28.80 15.15 34.62 4.08
661 665 6.544197 TGCTATATTTCGAAATAGGGTTTGCA 59.456 34.615 28.80 25.37 34.62 4.08
662 666 6.966021 TGCTATATTTCGAAATAGGGTTTGC 58.034 36.000 28.80 23.70 34.62 3.68
663 667 7.538678 GCATGCTATATTTCGAAATAGGGTTTG 59.461 37.037 28.80 23.09 34.62 2.93
664 668 7.448469 AGCATGCTATATTTCGAAATAGGGTTT 59.552 33.333 28.80 17.66 34.62 3.27
665 669 6.942576 AGCATGCTATATTTCGAAATAGGGTT 59.057 34.615 28.80 17.96 34.62 4.11
666 670 6.476378 AGCATGCTATATTTCGAAATAGGGT 58.524 36.000 28.80 18.26 34.62 4.34
667 671 6.992063 AGCATGCTATATTTCGAAATAGGG 57.008 37.500 28.80 23.79 34.62 3.53
671 675 8.331022 CGCTAATAGCATGCTATATTTCGAAAT 58.669 33.333 34.51 25.48 42.58 2.17
672 676 7.674008 GCGCTAATAGCATGCTATATTTCGAAA 60.674 37.037 34.51 13.91 42.58 3.46
673 677 6.237835 GCGCTAATAGCATGCTATATTTCGAA 60.238 38.462 34.51 11.84 42.58 3.71
674 678 5.232202 GCGCTAATAGCATGCTATATTTCGA 59.768 40.000 34.51 12.58 42.58 3.71
675 679 5.427082 GCGCTAATAGCATGCTATATTTCG 58.573 41.667 34.51 30.63 42.58 3.46
676 680 5.427082 CGCGCTAATAGCATGCTATATTTC 58.573 41.667 34.51 22.92 42.58 2.17
677 681 4.260375 GCGCGCTAATAGCATGCTATATTT 60.260 41.667 34.51 24.18 42.58 1.40
678 682 3.246226 GCGCGCTAATAGCATGCTATATT 59.754 43.478 34.51 25.71 42.58 1.28
679 683 2.797156 GCGCGCTAATAGCATGCTATAT 59.203 45.455 34.51 25.87 42.58 0.86
680 684 2.159240 AGCGCGCTAATAGCATGCTATA 60.159 45.455 34.51 22.41 45.58 1.31
681 685 1.002366 GCGCGCTAATAGCATGCTAT 58.998 50.000 30.43 30.43 42.58 2.97
682 686 0.038251 AGCGCGCTAATAGCATGCTA 60.038 50.000 35.79 28.72 45.58 3.49
683 687 1.301244 AGCGCGCTAATAGCATGCT 60.301 52.632 35.79 25.99 43.60 3.79
684 688 1.002366 ATAGCGCGCTAATAGCATGC 58.998 50.000 40.90 10.51 42.58 4.06
685 689 3.859961 AGTTATAGCGCGCTAATAGCATG 59.140 43.478 40.90 4.80 42.58 4.06
686 690 4.111375 AGTTATAGCGCGCTAATAGCAT 57.889 40.909 40.90 27.73 42.58 3.79
687 691 3.570926 AGTTATAGCGCGCTAATAGCA 57.429 42.857 40.90 23.00 42.58 3.49
688 692 3.673809 ACAAGTTATAGCGCGCTAATAGC 59.326 43.478 40.90 30.23 38.02 2.97
689 693 4.680110 ACACAAGTTATAGCGCGCTAATAG 59.320 41.667 40.90 27.66 31.73 1.73
690 694 4.613944 ACACAAGTTATAGCGCGCTAATA 58.386 39.130 40.90 28.70 31.73 0.98
691 695 3.454375 ACACAAGTTATAGCGCGCTAAT 58.546 40.909 40.90 29.53 31.73 1.73
692 696 2.883574 ACACAAGTTATAGCGCGCTAA 58.116 42.857 40.90 27.16 31.73 3.09
693 697 2.572191 ACACAAGTTATAGCGCGCTA 57.428 45.000 39.72 39.72 0.00 4.26
694 698 2.460918 CTACACAAGTTATAGCGCGCT 58.539 47.619 38.01 38.01 0.00 5.92
695 699 1.071436 GCTACACAAGTTATAGCGCGC 60.071 52.381 26.66 26.66 32.61 6.86
696 700 2.190161 TGCTACACAAGTTATAGCGCG 58.810 47.619 0.00 0.00 43.53 6.86
697 701 4.795970 AATGCTACACAAGTTATAGCGC 57.204 40.909 0.00 0.00 43.53 5.92
698 702 5.293324 TCCAAATGCTACACAAGTTATAGCG 59.707 40.000 8.10 0.00 43.53 4.26
699 703 6.538742 TCTCCAAATGCTACACAAGTTATAGC 59.461 38.462 6.38 6.38 41.44 2.97
700 704 8.492673 TTCTCCAAATGCTACACAAGTTATAG 57.507 34.615 0.00 0.00 0.00 1.31
701 705 7.552687 CCTTCTCCAAATGCTACACAAGTTATA 59.447 37.037 0.00 0.00 0.00 0.98
702 706 6.375455 CCTTCTCCAAATGCTACACAAGTTAT 59.625 38.462 0.00 0.00 0.00 1.89
703 707 5.705441 CCTTCTCCAAATGCTACACAAGTTA 59.295 40.000 0.00 0.00 0.00 2.24
704 708 4.520492 CCTTCTCCAAATGCTACACAAGTT 59.480 41.667 0.00 0.00 0.00 2.66
705 709 4.074970 CCTTCTCCAAATGCTACACAAGT 58.925 43.478 0.00 0.00 0.00 3.16
706 710 3.441572 CCCTTCTCCAAATGCTACACAAG 59.558 47.826 0.00 0.00 0.00 3.16
707 711 3.420893 CCCTTCTCCAAATGCTACACAA 58.579 45.455 0.00 0.00 0.00 3.33
708 712 2.879756 GCCCTTCTCCAAATGCTACACA 60.880 50.000 0.00 0.00 0.00 3.72
709 713 1.745653 GCCCTTCTCCAAATGCTACAC 59.254 52.381 0.00 0.00 0.00 2.90
710 714 1.340991 GGCCCTTCTCCAAATGCTACA 60.341 52.381 0.00 0.00 0.00 2.74
711 715 1.064389 AGGCCCTTCTCCAAATGCTAC 60.064 52.381 0.00 0.00 0.00 3.58
712 716 1.212935 GAGGCCCTTCTCCAAATGCTA 59.787 52.381 0.00 0.00 0.00 3.49
713 717 0.033699 GAGGCCCTTCTCCAAATGCT 60.034 55.000 0.00 0.00 0.00 3.79
714 718 1.379642 CGAGGCCCTTCTCCAAATGC 61.380 60.000 0.00 0.00 0.00 3.56
715 719 1.379642 GCGAGGCCCTTCTCCAAATG 61.380 60.000 0.00 0.00 0.00 2.32
716 720 1.077429 GCGAGGCCCTTCTCCAAAT 60.077 57.895 0.00 0.00 0.00 2.32
717 721 0.907704 TAGCGAGGCCCTTCTCCAAA 60.908 55.000 0.00 0.00 0.00 3.28
718 722 0.691078 ATAGCGAGGCCCTTCTCCAA 60.691 55.000 0.00 0.00 0.00 3.53
719 723 0.187606 TATAGCGAGGCCCTTCTCCA 59.812 55.000 0.00 0.00 0.00 3.86
720 724 1.562783 ATATAGCGAGGCCCTTCTCC 58.437 55.000 0.00 0.00 0.00 3.71
721 725 3.686916 AAATATAGCGAGGCCCTTCTC 57.313 47.619 0.00 0.00 0.00 2.87
722 726 3.136626 ACAAAATATAGCGAGGCCCTTCT 59.863 43.478 0.00 0.00 0.00 2.85
723 727 3.477530 ACAAAATATAGCGAGGCCCTTC 58.522 45.455 0.00 0.00 0.00 3.46
724 728 3.577805 ACAAAATATAGCGAGGCCCTT 57.422 42.857 0.00 0.00 0.00 3.95
725 729 3.557264 GCTACAAAATATAGCGAGGCCCT 60.557 47.826 0.00 0.00 36.02 5.19
726 730 2.742589 GCTACAAAATATAGCGAGGCCC 59.257 50.000 0.00 0.00 36.02 5.80
733 737 4.842139 ATAGCGCGCTACAAAATATAGC 57.158 40.909 40.42 2.19 41.43 2.97
756 760 4.315803 TGTTGGAAAAAGGCAACGAAAAA 58.684 34.783 0.00 0.00 46.39 1.94
757 761 3.926616 TGTTGGAAAAAGGCAACGAAAA 58.073 36.364 0.00 0.00 46.39 2.29
758 762 3.594603 TGTTGGAAAAAGGCAACGAAA 57.405 38.095 0.00 0.00 46.39 3.46
759 763 3.254892 GTTGTTGGAAAAAGGCAACGAA 58.745 40.909 0.00 0.00 46.39 3.85
760 764 2.231478 TGTTGTTGGAAAAAGGCAACGA 59.769 40.909 0.00 0.00 41.38 3.85
761 765 2.611518 TGTTGTTGGAAAAAGGCAACG 58.388 42.857 0.00 0.00 41.38 4.10
762 766 5.559427 AATTGTTGTTGGAAAAAGGCAAC 57.441 34.783 0.00 0.00 39.62 4.17
763 767 5.707298 TCAAATTGTTGTTGGAAAAAGGCAA 59.293 32.000 0.00 0.00 36.07 4.52
764 768 5.248640 TCAAATTGTTGTTGGAAAAAGGCA 58.751 33.333 0.00 0.00 36.07 4.75
765 769 5.809719 TCAAATTGTTGTTGGAAAAAGGC 57.190 34.783 0.00 0.00 36.07 4.35
784 788 4.812626 CCGTCTCATCAATGACATCATCAA 59.187 41.667 0.00 0.00 41.93 2.57
1546 1550 1.537562 CGGTGGTATTCTTCGGCCTAC 60.538 57.143 0.00 0.00 0.00 3.18
1555 1559 5.496556 TGAAATGATGAACGGTGGTATTCT 58.503 37.500 0.00 0.00 0.00 2.40
1659 1663 3.521126 AGATGACTGCCTTGGAAGTACAT 59.479 43.478 0.00 6.40 0.00 2.29
1946 1950 9.569167 CAGATATCGTATCATACCGTATTTTGT 57.431 33.333 0.00 0.00 0.00 2.83
2089 2096 6.594788 ATTGCTTAGAGAAATGAAAAGCCA 57.405 33.333 3.19 0.00 41.41 4.75
2185 2192 4.278419 GCAGATGGTTAACAAAGGTGTTCT 59.722 41.667 8.10 0.00 45.00 3.01
2252 2259 7.142306 ACATATAGCTCAATCATTGATGCAC 57.858 36.000 18.32 4.04 39.30 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.